Multiple sequence alignment - TraesCS1A01G192400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G192400 chr1A 100.000 8261 0 0 1 8261 347647860 347639600 0.000000e+00 15256.0
1 TraesCS1A01G192400 chr1A 94.643 280 11 3 297 573 13709823 13709545 1.650000e-116 431.0
2 TraesCS1A01G192400 chr1A 81.503 173 27 2 580 752 2281864 2282031 4.020000e-28 137.0
3 TraesCS1A01G192400 chr1D 96.421 3521 91 15 760 4249 275148876 275145360 0.000000e+00 5771.0
4 TraesCS1A01G192400 chr1D 96.128 2118 53 13 5638 7733 275144603 275142493 0.000000e+00 3430.0
5 TraesCS1A01G192400 chr1D 97.038 709 12 3 4931 5639 275145357 275144658 0.000000e+00 1184.0
6 TraesCS1A01G192400 chr1D 88.444 450 25 11 7731 8155 275142412 275141965 1.230000e-142 518.0
7 TraesCS1A01G192400 chr1D 83.429 175 24 3 578 752 408437348 408437517 3.090000e-34 158.0
8 TraesCS1A01G192400 chr1D 83.333 168 22 4 586 753 137225203 137225042 5.170000e-32 150.0
9 TraesCS1A01G192400 chr1B 96.000 2475 70 13 754 3211 374346286 374343824 0.000000e+00 3995.0
10 TraesCS1A01G192400 chr1B 94.005 2085 91 16 5638 7696 374341260 374339184 0.000000e+00 3127.0
11 TraesCS1A01G192400 chr1B 94.051 1765 70 16 3274 5008 374343823 374342064 0.000000e+00 2645.0
12 TraesCS1A01G192400 chr1B 94.393 642 29 5 5003 5639 374341954 374341315 0.000000e+00 979.0
13 TraesCS1A01G192400 chr1B 94.915 59 2 1 4692 4750 374342466 374342409 3.180000e-14 91.6
14 TraesCS1A01G192400 chr4B 98.092 262 5 0 312 573 15409688 15409427 2.720000e-124 457.0
15 TraesCS1A01G192400 chr4B 90.741 54 4 1 248 300 38755900 38755847 4.140000e-08 71.3
16 TraesCS1A01G192400 chr2A 97.719 263 6 0 310 572 725658468 725658206 3.520000e-123 453.0
17 TraesCS1A01G192400 chr2A 96.947 262 8 0 311 572 467248738 467248999 2.740000e-119 440.0
18 TraesCS1A01G192400 chr2A 96.591 264 9 0 311 574 101031327 101031590 9.840000e-119 438.0
19 TraesCS1A01G192400 chr2A 96.578 263 9 0 311 573 758937216 758937478 3.540000e-118 436.0
20 TraesCS1A01G192400 chr2A 95.572 271 11 1 303 572 477947466 477947196 4.580000e-117 433.0
21 TraesCS1A01G192400 chrUn 97.701 261 6 0 312 572 71293458 71293718 4.550000e-122 449.0
22 TraesCS1A01G192400 chrUn 80.460 174 26 6 580 752 132304471 132304305 8.700000e-25 126.0
23 TraesCS1A01G192400 chr5A 96.310 271 10 0 303 573 447521869 447522139 5.880000e-121 446.0
24 TraesCS1A01G192400 chr5A 79.787 188 29 7 568 755 63379761 63379583 2.420000e-25 128.0
25 TraesCS1A01G192400 chr5B 85.211 284 30 7 31 302 78474815 78475098 1.760000e-71 281.0
26 TraesCS1A01G192400 chr5B 80.829 193 24 6 117 297 566998716 566998907 1.120000e-28 139.0
27 TraesCS1A01G192400 chr5B 81.871 171 24 5 583 752 45019981 45020145 4.020000e-28 137.0
28 TraesCS1A01G192400 chr6D 79.655 290 50 7 3383 3671 412426946 412427227 5.060000e-47 200.0
29 TraesCS1A01G192400 chr6D 84.302 172 21 4 581 752 289352699 289352864 6.630000e-36 163.0
30 TraesCS1A01G192400 chr6D 84.118 170 22 3 583 752 203458936 203459100 8.580000e-35 159.0
31 TraesCS1A01G192400 chr6D 83.832 167 22 3 586 752 437430689 437430528 3.990000e-33 154.0
32 TraesCS1A01G192400 chr6A 78.302 318 53 13 3353 3667 558099748 558100052 3.040000e-44 191.0
33 TraesCS1A01G192400 chr6A 82.677 127 16 5 583 709 597946383 597946503 3.150000e-19 108.0
34 TraesCS1A01G192400 chr6A 88.136 59 6 1 243 300 432569365 432569423 1.490000e-07 69.4
35 TraesCS1A01G192400 chr6B 79.021 286 48 9 3383 3667 620881762 620882036 1.420000e-42 185.0
36 TraesCS1A01G192400 chr6B 87.302 63 4 3 243 302 651406497 651406558 1.490000e-07 69.4
37 TraesCS1A01G192400 chr7D 83.425 181 24 4 586 766 988903 988729 6.630000e-36 163.0
38 TraesCS1A01G192400 chr7D 80.571 175 28 5 579 752 131103475 131103306 6.730000e-26 130.0
39 TraesCS1A01G192400 chr3D 84.000 175 22 3 583 756 439095818 439095987 6.630000e-36 163.0
40 TraesCS1A01G192400 chr3D 81.609 174 27 3 581 754 410772805 410772973 1.120000e-28 139.0
41 TraesCS1A01G192400 chr3D 76.836 177 34 6 135 306 454298055 454298229 8.830000e-15 93.5
42 TraesCS1A01G192400 chr3D 88.710 62 6 1 243 303 300923398 300923337 3.200000e-09 75.0
43 TraesCS1A01G192400 chr5D 83.140 172 24 3 583 754 11004410 11004576 1.440000e-32 152.0
44 TraesCS1A01G192400 chr5D 78.000 150 32 1 116 265 542467699 542467847 8.830000e-15 93.5
45 TraesCS1A01G192400 chr4D 81.921 177 26 5 577 752 40557173 40557344 2.400000e-30 145.0
46 TraesCS1A01G192400 chr2B 80.435 184 32 3 117 300 240301756 240301935 4.020000e-28 137.0
47 TraesCS1A01G192400 chr2B 80.702 171 28 4 582 752 541088374 541088209 2.420000e-25 128.0
48 TraesCS1A01G192400 chr2B 85.714 63 8 1 243 304 742658447 742658385 1.920000e-06 65.8
49 TraesCS1A01G192400 chr4A 80.571 175 28 4 588 762 465793564 465793396 6.730000e-26 130.0
50 TraesCS1A01G192400 chr4A 80.838 167 27 3 586 752 636581065 636580904 8.700000e-25 126.0
51 TraesCS1A01G192400 chr3B 87.500 64 7 1 243 305 165819807 165819870 1.150000e-08 73.1
52 TraesCS1A01G192400 chr3A 85.484 62 8 1 243 303 93333797 93333736 6.920000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G192400 chr1A 347639600 347647860 8260 True 15256.00 15256 100.00000 1 8261 1 chr1A.!!$R2 8260
1 TraesCS1A01G192400 chr1D 275141965 275148876 6911 True 2725.75 5771 94.50775 760 8155 4 chr1D.!!$R2 7395
2 TraesCS1A01G192400 chr1B 374339184 374346286 7102 True 2167.52 3995 94.67280 754 7696 5 chr1B.!!$R1 6942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.037697 TCGGTGTCTGTTTGGATCGG 60.038 55.000 0.00 0.00 0.00 4.18 F
301 302 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10 F
352 353 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69 F
1354 1378 0.104855 TTGTGCTCTCGTTGACTGCT 59.895 50.000 0.00 0.00 0.00 4.24 F
1363 1387 1.864029 TCGTTGACTGCTGACAGAACG 60.864 52.381 16.20 16.20 46.99 3.95 F
1448 1472 2.480419 CGTGTTCAGGAATTGGTCACTC 59.520 50.000 0.00 0.00 32.68 3.51 F
2703 2744 2.428890 GTGAGATCATCGTCTTCCCAGT 59.571 50.000 0.00 0.00 0.00 4.00 F
3740 3797 0.753262 ATATCGTGTGAGGTCCTGCC 59.247 55.000 0.00 0.00 37.58 4.85 F
4915 4986 1.514873 GCTTCATTTTGGAGCGGCG 60.515 57.895 0.51 0.51 0.00 6.46 F
5795 6044 1.143684 TCCTTCAAAGCTGTCTTGGCT 59.856 47.619 0.00 0.00 42.31 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1137 0.254178 AGTTCGGTAGCGTAGGGAGA 59.746 55.000 14.79 0.0 0.00 3.71 R
1336 1360 0.598419 CAGCAGTCAACGAGAGCACA 60.598 55.000 0.00 0.0 0.00 4.57 R
1451 1475 3.204382 AGTGGTGGGTCCTATATTTTGGG 59.796 47.826 0.00 0.0 37.07 4.12 R
2479 2518 1.777878 TGGTAGAGTTTGCCCCTGAAA 59.222 47.619 0.00 0.0 0.00 2.69 R
2694 2735 2.820178 TGTGCTATGAGACTGGGAAGA 58.180 47.619 0.00 0.0 0.00 2.87 R
2938 2979 4.479158 TCTAAAATCCACCTGCCTGTTTT 58.521 39.130 0.00 0.0 0.00 2.43 R
4504 4571 0.105039 GGAGAGAGTAATGGGTGCGG 59.895 60.000 0.00 0.0 0.00 5.69 R
5264 5454 0.606673 GGCAGAACAGGAAGGTGGAC 60.607 60.000 0.00 0.0 0.00 4.02 R
6733 6996 0.039256 CCAACAGGCCAAATGTGACG 60.039 55.000 5.01 0.0 0.00 4.35 R
7546 7827 1.319079 GCAACAAACACAAACGAACGG 59.681 47.619 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.722193 GCTAGCAAGTCTGGCCAA 57.278 55.556 10.63 0.00 42.75 4.52
21 22 3.181526 GCTAGCAAGTCTGGCCAAT 57.818 52.632 10.63 0.00 42.75 3.16
22 23 1.020437 GCTAGCAAGTCTGGCCAATC 58.980 55.000 10.63 2.33 42.75 2.67
23 24 1.679944 GCTAGCAAGTCTGGCCAATCA 60.680 52.381 10.63 0.00 42.75 2.57
24 25 2.928334 CTAGCAAGTCTGGCCAATCAT 58.072 47.619 7.01 0.00 0.00 2.45
25 26 1.471119 AGCAAGTCTGGCCAATCATG 58.529 50.000 7.01 7.28 0.00 3.07
26 27 0.179119 GCAAGTCTGGCCAATCATGC 60.179 55.000 17.01 17.01 0.00 4.06
27 28 1.179152 CAAGTCTGGCCAATCATGCA 58.821 50.000 7.01 0.00 0.00 3.96
28 29 1.754803 CAAGTCTGGCCAATCATGCAT 59.245 47.619 7.01 0.00 0.00 3.96
29 30 1.688772 AGTCTGGCCAATCATGCATC 58.311 50.000 7.01 0.00 0.00 3.91
30 31 0.309922 GTCTGGCCAATCATGCATCG 59.690 55.000 7.01 0.00 0.00 3.84
31 32 1.007734 CTGGCCAATCATGCATCGC 60.008 57.895 7.01 0.00 0.00 4.58
32 33 1.730451 CTGGCCAATCATGCATCGCA 61.730 55.000 7.01 0.00 44.86 5.10
33 34 1.007734 GGCCAATCATGCATCGCAG 60.008 57.895 0.00 0.00 43.65 5.18
34 35 1.660575 GCCAATCATGCATCGCAGC 60.661 57.895 0.00 0.00 43.65 5.25
35 36 1.370051 CCAATCATGCATCGCAGCG 60.370 57.895 9.06 9.06 43.65 5.18
36 37 1.354155 CAATCATGCATCGCAGCGT 59.646 52.632 15.93 0.00 43.65 5.07
75 76 4.521062 CGGGAAGAGGCCGAGCTG 62.521 72.222 0.00 0.00 0.00 4.24
76 77 4.847444 GGGAAGAGGCCGAGCTGC 62.847 72.222 0.00 0.00 0.00 5.25
142 143 3.971702 GGAGCTTGCCCACCAGGT 61.972 66.667 0.00 0.00 38.26 4.00
143 144 2.674380 GAGCTTGCCCACCAGGTG 60.674 66.667 13.35 13.35 38.26 4.00
144 145 3.497884 GAGCTTGCCCACCAGGTGT 62.498 63.158 18.82 0.00 38.26 4.16
145 146 2.521708 GCTTGCCCACCAGGTGTT 60.522 61.111 18.82 0.00 38.26 3.32
146 147 2.564721 GCTTGCCCACCAGGTGTTC 61.565 63.158 18.82 9.81 38.26 3.18
147 148 2.203280 TTGCCCACCAGGTGTTCG 60.203 61.111 18.82 6.52 38.26 3.95
148 149 2.674563 CTTGCCCACCAGGTGTTCGA 62.675 60.000 18.82 8.24 38.26 3.71
149 150 2.668550 GCCCACCAGGTGTTCGAC 60.669 66.667 18.82 0.00 38.26 4.20
150 151 2.032071 CCCACCAGGTGTTCGACC 59.968 66.667 18.82 0.00 46.58 4.79
157 158 3.174788 GGTGTTCGACCGAATGCC 58.825 61.111 8.14 9.50 36.45 4.40
158 159 2.736682 GGTGTTCGACCGAATGCCG 61.737 63.158 8.14 0.00 36.45 5.69
159 160 1.735198 GTGTTCGACCGAATGCCGA 60.735 57.895 8.14 0.00 41.76 5.54
160 161 1.735198 TGTTCGACCGAATGCCGAC 60.735 57.895 8.14 0.00 41.76 4.79
161 162 2.505337 TTCGACCGAATGCCGACG 60.505 61.111 0.18 0.00 41.76 5.12
174 175 3.410516 CGACGCGGACATGCACAA 61.411 61.111 12.47 0.00 34.15 3.33
175 176 2.942879 GACGCGGACATGCACAAA 59.057 55.556 12.47 0.00 34.15 2.83
176 177 1.281353 GACGCGGACATGCACAAAA 59.719 52.632 12.47 0.00 34.15 2.44
177 178 0.109781 GACGCGGACATGCACAAAAT 60.110 50.000 12.47 0.00 34.15 1.82
178 179 0.387112 ACGCGGACATGCACAAAATG 60.387 50.000 12.47 0.00 34.15 2.32
187 188 2.144362 GCACAAAATGCGTCTTGGC 58.856 52.632 0.00 0.00 46.55 4.52
188 189 1.284297 GCACAAAATGCGTCTTGGCC 61.284 55.000 0.00 0.00 46.55 5.36
189 190 0.667184 CACAAAATGCGTCTTGGCCC 60.667 55.000 0.00 0.00 0.00 5.80
190 191 1.079888 CAAAATGCGTCTTGGCCCC 60.080 57.895 0.00 0.00 0.00 5.80
191 192 2.635443 AAAATGCGTCTTGGCCCCG 61.635 57.895 0.00 0.00 0.00 5.73
192 193 3.860930 AAATGCGTCTTGGCCCCGT 62.861 57.895 0.00 0.00 0.00 5.28
193 194 3.860930 AATGCGTCTTGGCCCCGTT 62.861 57.895 0.00 0.00 0.00 4.44
214 215 3.218470 CGTACCGACCGCCCCATA 61.218 66.667 0.00 0.00 0.00 2.74
215 216 2.418777 GTACCGACCGCCCCATAC 59.581 66.667 0.00 0.00 0.00 2.39
216 217 2.043147 TACCGACCGCCCCATACA 60.043 61.111 0.00 0.00 0.00 2.29
217 218 1.685077 TACCGACCGCCCCATACAA 60.685 57.895 0.00 0.00 0.00 2.41
218 219 1.263342 TACCGACCGCCCCATACAAA 61.263 55.000 0.00 0.00 0.00 2.83
219 220 1.377463 CCGACCGCCCCATACAAAA 60.377 57.895 0.00 0.00 0.00 2.44
220 221 0.961358 CCGACCGCCCCATACAAAAA 60.961 55.000 0.00 0.00 0.00 1.94
242 243 4.541482 GATACGGACGCGCGGACA 62.541 66.667 35.22 14.40 0.00 4.02
243 244 4.118995 ATACGGACGCGCGGACAA 62.119 61.111 35.22 15.53 0.00 3.18
276 277 6.401955 AAAAACAAAATCGGTGTCTGTTTG 57.598 33.333 4.38 0.00 39.48 2.93
277 278 3.708563 ACAAAATCGGTGTCTGTTTGG 57.291 42.857 0.00 0.00 34.28 3.28
278 279 3.283751 ACAAAATCGGTGTCTGTTTGGA 58.716 40.909 0.00 0.00 34.28 3.53
279 280 3.888930 ACAAAATCGGTGTCTGTTTGGAT 59.111 39.130 0.00 0.00 34.28 3.41
280 281 4.023193 ACAAAATCGGTGTCTGTTTGGATC 60.023 41.667 0.00 0.00 34.28 3.36
281 282 2.010145 ATCGGTGTCTGTTTGGATCG 57.990 50.000 0.00 0.00 0.00 3.69
282 283 0.037697 TCGGTGTCTGTTTGGATCGG 60.038 55.000 0.00 0.00 0.00 4.18
283 284 1.635663 CGGTGTCTGTTTGGATCGGC 61.636 60.000 0.00 0.00 0.00 5.54
284 285 1.305930 GGTGTCTGTTTGGATCGGCC 61.306 60.000 0.00 0.00 37.10 6.13
285 286 1.002624 TGTCTGTTTGGATCGGCCC 60.003 57.895 0.00 0.00 34.97 5.80
286 287 2.106683 GTCTGTTTGGATCGGCCCG 61.107 63.158 0.00 0.00 34.97 6.13
287 288 2.046314 CTGTTTGGATCGGCCCGT 60.046 61.111 1.63 0.00 34.97 5.28
288 289 1.674322 CTGTTTGGATCGGCCCGTT 60.674 57.895 1.63 0.00 34.97 4.44
289 290 1.922135 CTGTTTGGATCGGCCCGTTG 61.922 60.000 1.63 0.00 34.97 4.10
290 291 2.360600 TTTGGATCGGCCCGTTGG 60.361 61.111 1.63 0.00 34.97 3.77
291 292 2.896592 TTTGGATCGGCCCGTTGGA 61.897 57.895 1.63 0.00 34.97 3.53
292 293 2.813226 TTTGGATCGGCCCGTTGGAG 62.813 60.000 1.63 0.00 34.97 3.86
293 294 3.782443 GGATCGGCCCGTTGGAGT 61.782 66.667 1.63 0.00 0.00 3.85
294 295 2.267961 GATCGGCCCGTTGGAGTT 59.732 61.111 1.63 0.00 0.00 3.01
295 296 2.046314 ATCGGCCCGTTGGAGTTG 60.046 61.111 1.63 0.00 0.00 3.16
298 299 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
299 300 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
300 301 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
301 302 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
302 303 1.726853 CCCGTTGGAGTTGCTCTTAG 58.273 55.000 0.00 0.00 0.00 2.18
303 304 1.002087 CCCGTTGGAGTTGCTCTTAGT 59.998 52.381 0.00 0.00 0.00 2.24
304 305 2.550208 CCCGTTGGAGTTGCTCTTAGTT 60.550 50.000 0.00 0.00 0.00 2.24
305 306 2.480419 CCGTTGGAGTTGCTCTTAGTTG 59.520 50.000 0.00 0.00 0.00 3.16
306 307 3.131396 CGTTGGAGTTGCTCTTAGTTGT 58.869 45.455 0.00 0.00 0.00 3.32
307 308 4.304110 CGTTGGAGTTGCTCTTAGTTGTA 58.696 43.478 0.00 0.00 0.00 2.41
308 309 4.386049 CGTTGGAGTTGCTCTTAGTTGTAG 59.614 45.833 0.00 0.00 0.00 2.74
309 310 5.298347 GTTGGAGTTGCTCTTAGTTGTAGT 58.702 41.667 0.00 0.00 0.00 2.73
310 311 6.453092 GTTGGAGTTGCTCTTAGTTGTAGTA 58.547 40.000 0.00 0.00 0.00 1.82
311 312 6.852420 TGGAGTTGCTCTTAGTTGTAGTAT 57.148 37.500 0.00 0.00 0.00 2.12
312 313 7.949690 TGGAGTTGCTCTTAGTTGTAGTATA 57.050 36.000 0.00 0.00 0.00 1.47
313 314 7.769220 TGGAGTTGCTCTTAGTTGTAGTATAC 58.231 38.462 0.00 0.00 43.42 1.47
314 315 7.614583 TGGAGTTGCTCTTAGTTGTAGTATACT 59.385 37.037 10.87 10.87 43.54 2.12
315 316 8.130469 GGAGTTGCTCTTAGTTGTAGTATACTC 58.870 40.741 9.12 2.17 43.54 2.59
316 317 7.998580 AGTTGCTCTTAGTTGTAGTATACTCC 58.001 38.462 9.12 0.00 43.54 3.85
317 318 6.956202 TGCTCTTAGTTGTAGTATACTCCC 57.044 41.667 9.12 2.06 43.54 4.30
318 319 6.670617 TGCTCTTAGTTGTAGTATACTCCCT 58.329 40.000 9.12 3.98 43.54 4.20
319 320 6.771749 TGCTCTTAGTTGTAGTATACTCCCTC 59.228 42.308 9.12 0.00 43.54 4.30
320 321 6.207221 GCTCTTAGTTGTAGTATACTCCCTCC 59.793 46.154 9.12 0.00 43.54 4.30
321 322 6.294473 TCTTAGTTGTAGTATACTCCCTCCG 58.706 44.000 9.12 0.00 43.54 4.63
322 323 3.830121 AGTTGTAGTATACTCCCTCCGG 58.170 50.000 9.12 0.00 43.54 5.14
323 324 3.203934 AGTTGTAGTATACTCCCTCCGGT 59.796 47.826 9.12 0.00 43.54 5.28
324 325 3.498774 TGTAGTATACTCCCTCCGGTC 57.501 52.381 9.12 0.00 43.54 4.79
325 326 2.779430 TGTAGTATACTCCCTCCGGTCA 59.221 50.000 9.12 0.00 43.54 4.02
326 327 3.396946 TGTAGTATACTCCCTCCGGTCAT 59.603 47.826 9.12 0.00 43.54 3.06
327 328 3.614568 AGTATACTCCCTCCGGTCATT 57.385 47.619 0.00 0.00 0.00 2.57
328 329 3.924922 AGTATACTCCCTCCGGTCATTT 58.075 45.455 0.00 0.00 0.00 2.32
329 330 4.296056 AGTATACTCCCTCCGGTCATTTT 58.704 43.478 0.00 0.00 0.00 1.82
330 331 4.720273 AGTATACTCCCTCCGGTCATTTTT 59.280 41.667 0.00 0.00 0.00 1.94
331 332 5.901276 AGTATACTCCCTCCGGTCATTTTTA 59.099 40.000 0.00 0.00 0.00 1.52
332 333 3.345508 ACTCCCTCCGGTCATTTTTAC 57.654 47.619 0.00 0.00 0.00 2.01
333 334 2.910977 ACTCCCTCCGGTCATTTTTACT 59.089 45.455 0.00 0.00 0.00 2.24
334 335 3.055312 ACTCCCTCCGGTCATTTTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
335 336 3.178865 TCCCTCCGGTCATTTTTACTCT 58.821 45.455 0.00 0.00 0.00 3.24
336 337 3.055385 TCCCTCCGGTCATTTTTACTCTG 60.055 47.826 0.00 0.00 0.00 3.35
337 338 2.678336 CCTCCGGTCATTTTTACTCTGC 59.322 50.000 0.00 0.00 0.00 4.26
338 339 3.334691 CTCCGGTCATTTTTACTCTGCA 58.665 45.455 0.00 0.00 0.00 4.41
339 340 3.071479 TCCGGTCATTTTTACTCTGCAC 58.929 45.455 0.00 0.00 0.00 4.57
340 341 2.811431 CCGGTCATTTTTACTCTGCACA 59.189 45.455 0.00 0.00 0.00 4.57
341 342 3.440173 CCGGTCATTTTTACTCTGCACAT 59.560 43.478 0.00 0.00 0.00 3.21
342 343 4.082787 CCGGTCATTTTTACTCTGCACATT 60.083 41.667 0.00 0.00 0.00 2.71
343 344 4.853196 CGGTCATTTTTACTCTGCACATTG 59.147 41.667 0.00 0.00 0.00 2.82
344 345 5.163513 GGTCATTTTTACTCTGCACATTGG 58.836 41.667 0.00 0.00 0.00 3.16
345 346 5.048083 GGTCATTTTTACTCTGCACATTGGA 60.048 40.000 0.00 0.00 0.00 3.53
346 347 6.350445 GGTCATTTTTACTCTGCACATTGGAT 60.350 38.462 0.00 0.00 0.00 3.41
347 348 7.092716 GTCATTTTTACTCTGCACATTGGATT 58.907 34.615 0.00 0.00 0.00 3.01
348 349 7.599998 GTCATTTTTACTCTGCACATTGGATTT 59.400 33.333 0.00 0.00 0.00 2.17
349 350 7.599621 TCATTTTTACTCTGCACATTGGATTTG 59.400 33.333 0.00 0.00 0.00 2.32
350 351 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
351 352 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
352 353 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
353 354 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
354 355 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
355 356 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
356 357 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
357 358 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
358 359 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
359 360 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
360 361 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
361 362 4.202202 ACATTGGATTTGCCGAAAGTCAAA 60.202 37.500 0.00 0.00 40.66 2.69
362 363 3.363341 TGGATTTGCCGAAAGTCAAAC 57.637 42.857 0.00 0.00 40.66 2.93
363 364 2.955660 TGGATTTGCCGAAAGTCAAACT 59.044 40.909 0.00 0.00 40.66 2.66
364 365 3.383185 TGGATTTGCCGAAAGTCAAACTT 59.617 39.130 0.00 0.00 38.90 2.66
365 366 4.142049 TGGATTTGCCGAAAGTCAAACTTT 60.142 37.500 4.82 4.82 41.99 2.66
366 367 6.190408 TGGATTTGCCGAAAGTCAAACTTTG 61.190 40.000 9.65 0.00 42.50 2.77
470 471 9.857656 AGATGAATCTAATGATATTGGTGTTGT 57.142 29.630 0.00 0.00 34.85 3.32
477 478 9.898152 TCTAATGATATTGGTGTTGTTATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
480 481 9.806203 AATGATATTGGTGTTGTTATGTGAATG 57.194 29.630 0.00 0.00 0.00 2.67
481 482 8.347004 TGATATTGGTGTTGTTATGTGAATGT 57.653 30.769 0.00 0.00 0.00 2.71
482 483 8.801299 TGATATTGGTGTTGTTATGTGAATGTT 58.199 29.630 0.00 0.00 0.00 2.71
483 484 9.638239 GATATTGGTGTTGTTATGTGAATGTTT 57.362 29.630 0.00 0.00 0.00 2.83
524 525 5.611796 TTGGTCAAAGTTGAATGAGATCG 57.388 39.130 0.00 0.00 39.21 3.69
525 526 4.893608 TGGTCAAAGTTGAATGAGATCGA 58.106 39.130 0.00 0.00 39.21 3.59
526 527 4.690748 TGGTCAAAGTTGAATGAGATCGAC 59.309 41.667 0.00 0.00 39.21 4.20
527 528 4.932200 GGTCAAAGTTGAATGAGATCGACT 59.068 41.667 0.00 0.00 44.27 4.18
531 532 3.775202 AGTTGAATGAGATCGACTTCGG 58.225 45.455 0.00 0.00 40.43 4.30
532 533 3.193691 AGTTGAATGAGATCGACTTCGGT 59.806 43.478 0.00 0.00 40.43 4.69
533 534 6.131264 AAGTTGAATGAGATCGACTTCGGTC 61.131 44.000 3.61 3.61 46.42 4.79
541 542 3.947910 ATCGACTTCGGTCAAACCTAA 57.052 42.857 0.00 0.00 44.65 2.69
542 543 3.947910 TCGACTTCGGTCAAACCTAAT 57.052 42.857 0.00 0.00 44.65 1.73
543 544 5.587388 ATCGACTTCGGTCAAACCTAATA 57.413 39.130 0.00 0.00 44.65 0.98
544 545 5.587388 TCGACTTCGGTCAAACCTAATAT 57.413 39.130 0.00 0.00 44.65 1.28
545 546 5.345702 TCGACTTCGGTCAAACCTAATATG 58.654 41.667 0.00 0.00 44.65 1.78
546 547 4.025979 CGACTTCGGTCAAACCTAATATGC 60.026 45.833 0.00 0.00 44.65 3.14
547 548 4.839121 ACTTCGGTCAAACCTAATATGCA 58.161 39.130 0.00 0.00 35.66 3.96
548 549 4.876107 ACTTCGGTCAAACCTAATATGCAG 59.124 41.667 0.00 0.00 35.66 4.41
549 550 4.746535 TCGGTCAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 35.66 4.26
550 551 4.693283 TCGGTCAAACCTAATATGCAGAG 58.307 43.478 0.00 0.00 35.66 3.35
551 552 4.161565 TCGGTCAAACCTAATATGCAGAGT 59.838 41.667 0.00 0.00 35.66 3.24
552 553 5.361571 TCGGTCAAACCTAATATGCAGAGTA 59.638 40.000 0.00 0.00 35.66 2.59
553 554 6.046593 CGGTCAAACCTAATATGCAGAGTAA 58.953 40.000 0.00 0.00 35.66 2.24
554 555 6.537301 CGGTCAAACCTAATATGCAGAGTAAA 59.463 38.462 0.00 0.00 35.66 2.01
555 556 7.065324 CGGTCAAACCTAATATGCAGAGTAAAA 59.935 37.037 0.00 0.00 35.66 1.52
556 557 8.736244 GGTCAAACCTAATATGCAGAGTAAAAA 58.264 33.333 0.00 0.00 34.73 1.94
561 562 8.451908 ACCTAATATGCAGAGTAAAAATGACC 57.548 34.615 0.00 0.00 0.00 4.02
562 563 7.226720 ACCTAATATGCAGAGTAAAAATGACCG 59.773 37.037 0.00 0.00 0.00 4.79
563 564 6.377327 AATATGCAGAGTAAAAATGACCGG 57.623 37.500 0.00 0.00 0.00 5.28
564 565 3.410631 TGCAGAGTAAAAATGACCGGA 57.589 42.857 9.46 0.00 0.00 5.14
565 566 3.334691 TGCAGAGTAAAAATGACCGGAG 58.665 45.455 9.46 0.00 0.00 4.63
580 581 2.667473 CGGAGGGAGTACGTTTCAAT 57.333 50.000 0.00 0.00 0.00 2.57
581 582 3.788333 CGGAGGGAGTACGTTTCAATA 57.212 47.619 0.00 0.00 0.00 1.90
582 583 4.317671 CGGAGGGAGTACGTTTCAATAT 57.682 45.455 0.00 0.00 0.00 1.28
583 584 5.443185 CGGAGGGAGTACGTTTCAATATA 57.557 43.478 0.00 0.00 0.00 0.86
584 585 6.022163 CGGAGGGAGTACGTTTCAATATAT 57.978 41.667 0.00 0.00 0.00 0.86
585 586 6.453092 CGGAGGGAGTACGTTTCAATATATT 58.547 40.000 0.00 0.00 0.00 1.28
586 587 6.585322 CGGAGGGAGTACGTTTCAATATATTC 59.415 42.308 0.00 0.00 0.00 1.75
587 588 6.872547 GGAGGGAGTACGTTTCAATATATTCC 59.127 42.308 0.00 0.00 0.00 3.01
588 589 6.766429 AGGGAGTACGTTTCAATATATTCCC 58.234 40.000 0.00 0.00 40.64 3.97
589 590 6.557633 AGGGAGTACGTTTCAATATATTCCCT 59.442 38.462 7.72 7.72 44.53 4.20
590 591 6.872547 GGGAGTACGTTTCAATATATTCCCTC 59.127 42.308 0.00 0.00 37.99 4.30
591 592 6.872547 GGAGTACGTTTCAATATATTCCCTCC 59.127 42.308 0.00 0.00 0.00 4.30
592 593 6.453092 AGTACGTTTCAATATATTCCCTCCG 58.547 40.000 0.00 0.00 0.00 4.63
593 594 5.286267 ACGTTTCAATATATTCCCTCCGT 57.714 39.130 0.00 0.00 0.00 4.69
594 595 5.677567 ACGTTTCAATATATTCCCTCCGTT 58.322 37.500 0.00 0.00 0.00 4.44
595 596 6.117488 ACGTTTCAATATATTCCCTCCGTTT 58.883 36.000 0.00 0.00 0.00 3.60
596 597 6.259387 ACGTTTCAATATATTCCCTCCGTTTC 59.741 38.462 0.00 0.00 0.00 2.78
597 598 6.482308 CGTTTCAATATATTCCCTCCGTTTCT 59.518 38.462 0.00 0.00 0.00 2.52
598 599 7.654520 CGTTTCAATATATTCCCTCCGTTTCTA 59.345 37.037 0.00 0.00 0.00 2.10
599 600 9.333724 GTTTCAATATATTCCCTCCGTTTCTAA 57.666 33.333 0.00 0.00 0.00 2.10
600 601 9.908747 TTTCAATATATTCCCTCCGTTTCTAAA 57.091 29.630 0.00 0.00 0.00 1.85
609 610 7.850935 TCCCTCCGTTTCTAAATATATGTCT 57.149 36.000 0.00 0.00 0.00 3.41
610 611 8.258850 TCCCTCCGTTTCTAAATATATGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
611 612 8.711170 TCCCTCCGTTTCTAAATATATGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
612 613 9.338622 CCCTCCGTTTCTAAATATATGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
631 632 8.912988 TGTCTTTTTAGACATTTCAAATGGAGT 58.087 29.630 14.70 1.25 43.09 3.85
632 633 9.399403 GTCTTTTTAGACATTTCAAATGGAGTC 57.601 33.333 14.70 3.35 38.59 3.36
633 634 9.354673 TCTTTTTAGACATTTCAAATGGAGTCT 57.645 29.630 14.70 10.33 39.43 3.24
634 635 9.971922 CTTTTTAGACATTTCAAATGGAGTCTT 57.028 29.630 14.70 0.00 37.50 3.01
640 641 9.354673 AGACATTTCAAATGGAGTCTTTTTAGA 57.645 29.630 14.70 0.00 32.88 2.10
694 695 9.591404 GAGTATAGATTCATTCATTTTGCTTCG 57.409 33.333 0.00 0.00 0.00 3.79
695 696 9.113838 AGTATAGATTCATTCATTTTGCTTCGT 57.886 29.630 0.00 0.00 0.00 3.85
702 703 7.969387 TCATTCATTTTGCTTCGTATTTAGC 57.031 32.000 0.00 0.00 37.89 3.09
703 704 6.972328 TCATTCATTTTGCTTCGTATTTAGCC 59.028 34.615 0.00 0.00 36.56 3.93
704 705 5.888691 TCATTTTGCTTCGTATTTAGCCA 57.111 34.783 0.00 0.00 36.56 4.75
705 706 5.636837 TCATTTTGCTTCGTATTTAGCCAC 58.363 37.500 0.00 0.00 36.56 5.01
706 707 5.414454 TCATTTTGCTTCGTATTTAGCCACT 59.586 36.000 0.00 0.00 36.56 4.00
707 708 5.699097 TTTTGCTTCGTATTTAGCCACTT 57.301 34.783 0.00 0.00 36.56 3.16
708 709 4.678509 TTGCTTCGTATTTAGCCACTTG 57.321 40.909 0.00 0.00 36.56 3.16
709 710 2.418628 TGCTTCGTATTTAGCCACTTGC 59.581 45.455 0.00 0.00 36.56 4.01
724 725 6.843069 GCCACTTGCTGAAATCTTTAAAAA 57.157 33.333 0.00 0.00 36.87 1.94
746 747 7.625828 AAAAACCTATATTTGAGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
747 748 4.957684 ACCTATATTTGAGAACGGAGGG 57.042 45.455 0.00 0.00 0.00 4.30
748 749 4.553678 ACCTATATTTGAGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
749 750 4.589374 ACCTATATTTGAGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
750 751 4.589374 CCTATATTTGAGAACGGAGGGAGT 59.411 45.833 0.00 0.00 0.00 3.85
751 752 5.773680 CCTATATTTGAGAACGGAGGGAGTA 59.226 44.000 0.00 0.00 0.00 2.59
752 753 3.889520 ATTTGAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
762 763 3.446516 ACGGAGGGAGTACTTGTGTAATC 59.553 47.826 0.00 0.00 41.43 1.75
891 908 6.423776 AAATTGTGATTTCCTCCACATTGT 57.576 33.333 0.00 0.00 42.13 2.71
1068 1092 4.121669 GCTGACCTCGCTCTCGCA 62.122 66.667 0.00 0.00 35.30 5.10
1331 1355 2.498167 CTTTTGCTGGAGTAGTGCTGT 58.502 47.619 0.00 0.00 0.00 4.40
1332 1356 3.664107 CTTTTGCTGGAGTAGTGCTGTA 58.336 45.455 0.00 0.00 0.00 2.74
1336 1360 2.632996 TGCTGGAGTAGTGCTGTACTTT 59.367 45.455 3.17 0.00 40.89 2.66
1354 1378 0.104855 TTGTGCTCTCGTTGACTGCT 59.895 50.000 0.00 0.00 0.00 4.24
1363 1387 1.864029 TCGTTGACTGCTGACAGAACG 60.864 52.381 16.20 16.20 46.99 3.95
1405 1429 6.822667 TTAGTGTTACAGGTTACGAGATGA 57.177 37.500 0.00 0.00 0.00 2.92
1448 1472 2.480419 CGTGTTCAGGAATTGGTCACTC 59.520 50.000 0.00 0.00 32.68 3.51
1451 1475 2.737252 GTTCAGGAATTGGTCACTCGAC 59.263 50.000 0.00 0.00 41.80 4.20
1639 1663 6.749139 AGAAGATATCGTGCAGCATACTTTA 58.251 36.000 0.00 0.00 0.00 1.85
1748 1783 7.165485 TGCCTTTTTAGTATGCAGAGAAGTTA 58.835 34.615 0.00 0.00 0.00 2.24
1784 1819 3.137728 ACTTACCTACTTTTGCCTGTGGT 59.862 43.478 0.00 0.00 0.00 4.16
1786 1821 3.868619 ACCTACTTTTGCCTGTGGTAA 57.131 42.857 0.00 0.00 0.00 2.85
2455 2494 5.010922 TGTTTTGCCTCTTTGATGCTATGTT 59.989 36.000 0.00 0.00 0.00 2.71
2614 2653 9.356433 CAACAGATGCTATTAGTCTGATCTATG 57.644 37.037 14.85 6.56 41.38 2.23
2629 2668 5.431765 TGATCTATGAAAACCTCCAGAAGC 58.568 41.667 0.00 0.00 0.00 3.86
2694 2735 3.874392 TGACACATGTGAGATCATCGT 57.126 42.857 31.94 6.16 0.00 3.73
2703 2744 2.428890 GTGAGATCATCGTCTTCCCAGT 59.571 50.000 0.00 0.00 0.00 4.00
3112 3154 6.842280 AGTTGTTGGAGGGGTATTAAAGTTTT 59.158 34.615 0.00 0.00 0.00 2.43
3652 3709 7.413109 GCATTCTAGTGTAAGTTAACTGAAGGC 60.413 40.741 17.59 17.59 35.86 4.35
3661 3718 5.712152 AGTTAACTGAAGGCAAATCAAGG 57.288 39.130 7.48 0.00 0.00 3.61
3740 3797 0.753262 ATATCGTGTGAGGTCCTGCC 59.247 55.000 0.00 0.00 37.58 4.85
4001 4062 6.084326 ACTGTTCAATTTTTATGCGGAACT 57.916 33.333 0.00 0.00 36.50 3.01
4014 4075 1.540363 GCGGAACTGTTGAAGTCCAGA 60.540 52.381 0.00 0.00 38.56 3.86
4116 4178 8.437742 CCTTTTATGTTTTGACAATTGCAGATC 58.562 33.333 5.05 0.00 0.00 2.75
4345 4410 8.971032 AGAATAGGGAGAAACAGATCATAGAT 57.029 34.615 0.00 0.00 0.00 1.98
4358 4423 7.293828 ACAGATCATAGATGAGACAGGACTTA 58.706 38.462 0.00 0.00 40.64 2.24
4359 4424 7.230510 ACAGATCATAGATGAGACAGGACTTAC 59.769 40.741 0.00 0.00 40.64 2.34
4361 4426 4.822350 TCATAGATGAGACAGGACTTACGG 59.178 45.833 0.00 0.00 32.11 4.02
4365 4430 5.014858 AGATGAGACAGGACTTACGGTTAA 58.985 41.667 0.00 0.00 0.00 2.01
4366 4431 5.479375 AGATGAGACAGGACTTACGGTTAAA 59.521 40.000 0.00 0.00 0.00 1.52
4369 4434 6.527423 TGAGACAGGACTTACGGTTAAAAAT 58.473 36.000 0.00 0.00 0.00 1.82
4370 4435 7.669427 TGAGACAGGACTTACGGTTAAAAATA 58.331 34.615 0.00 0.00 0.00 1.40
4371 4436 7.816031 TGAGACAGGACTTACGGTTAAAAATAG 59.184 37.037 0.00 0.00 0.00 1.73
4372 4437 7.674120 AGACAGGACTTACGGTTAAAAATAGT 58.326 34.615 0.00 0.00 0.00 2.12
4373 4438 8.806146 AGACAGGACTTACGGTTAAAAATAGTA 58.194 33.333 0.00 0.00 0.00 1.82
4453 4519 2.312390 GCCAACTAAACTTGTCCCCAA 58.688 47.619 0.00 0.00 0.00 4.12
4480 4547 6.150140 ACTGTTCTTTGTCTAGCAATCCAATC 59.850 38.462 1.30 0.00 36.89 2.67
4504 4571 7.202526 TCCAACTCAAACTCAATTTGTCAATC 58.797 34.615 0.00 0.00 46.70 2.67
4505 4572 6.421801 CCAACTCAAACTCAATTTGTCAATCC 59.578 38.462 0.00 0.00 46.70 3.01
4529 4596 4.706962 GCACCCATTACTCTCTCCATTTTT 59.293 41.667 0.00 0.00 0.00 1.94
4541 4608 9.893305 ACTCTCTCCATTTTTAAATGTAAAACG 57.107 29.630 12.70 0.00 43.24 3.60
4542 4609 8.736751 TCTCTCCATTTTTAAATGTAAAACGC 57.263 30.769 12.70 0.00 43.24 4.84
4614 4681 4.460731 TGTGAAACAGAACCACAATTCACA 59.539 37.500 13.35 13.35 45.67 3.58
4615 4682 5.406649 GTGAAACAGAACCACAATTCACAA 58.593 37.500 10.58 0.00 43.63 3.33
4616 4683 6.042143 GTGAAACAGAACCACAATTCACAAT 58.958 36.000 10.58 0.00 43.63 2.71
4648 4715 8.757982 AAGCAAGTACATTTGAATATGGATCT 57.242 30.769 0.00 0.00 0.00 2.75
4684 4751 6.892658 TTTATGTCACATAAACTGCCTTGT 57.107 33.333 17.48 0.00 0.00 3.16
4698 4765 4.278419 ACTGCCTTGTCTTAACCAATTCAC 59.722 41.667 0.00 0.00 0.00 3.18
4701 4768 5.304101 TGCCTTGTCTTAACCAATTCACAAT 59.696 36.000 0.00 0.00 0.00 2.71
4713 4780 7.701539 ACCAATTCACAATCATAAGCAAGTA 57.298 32.000 0.00 0.00 0.00 2.24
4769 4836 6.068010 TCATGGAGTAATTGTTGGTCAAAGT 58.932 36.000 0.00 0.00 39.62 2.66
4846 4913 8.877864 AATATAAACAGAACCTTGTTCATCCA 57.122 30.769 9.42 0.00 40.24 3.41
4850 4917 3.315191 ACAGAACCTTGTTCATCCAAACG 59.685 43.478 9.42 0.00 31.58 3.60
4856 4923 2.552599 TGTTCATCCAAACGCCTACA 57.447 45.000 0.00 0.00 31.58 2.74
4878 4945 6.237901 ACATGCTGTTCCTTATGTACTTTCA 58.762 36.000 0.00 0.00 32.41 2.69
4886 4953 9.290988 TGTTCCTTATGTACTTTCATTTTGCTA 57.709 29.630 0.00 0.00 0.00 3.49
4912 4983 7.935338 AATAATATTGCTTCATTTTGGAGCG 57.065 32.000 3.48 0.00 0.00 5.03
4915 4986 1.514873 GCTTCATTTTGGAGCGGCG 60.515 57.895 0.51 0.51 0.00 6.46
4945 5017 6.494893 TCCCAGTGAAAATCTATTTGTTCG 57.505 37.500 0.00 0.00 0.00 3.95
5089 5278 5.159273 AGCAAACTTCAAAGGAAAAACCA 57.841 34.783 0.00 0.00 42.04 3.67
5180 5369 7.283127 ACCATACATACTGTTGTTCATTCATCC 59.717 37.037 0.00 0.00 0.00 3.51
5181 5370 7.500227 CCATACATACTGTTGTTCATTCATCCT 59.500 37.037 0.00 0.00 0.00 3.24
5229 5418 6.663093 AGTTCAATGGCCACTTGAATATTGTA 59.337 34.615 29.55 13.73 42.68 2.41
5264 5454 5.694006 GCTTACTCTGGAGCAATACTACATG 59.306 44.000 0.00 0.00 39.05 3.21
5640 5889 9.431887 AGCGGTCGATACAAATACAATTTATAT 57.568 29.630 0.00 0.00 0.00 0.86
5795 6044 1.143684 TCCTTCAAAGCTGTCTTGGCT 59.856 47.619 0.00 0.00 42.31 4.75
5846 6095 3.692101 TGTGTGAAAAAGGACGACATTGT 59.308 39.130 0.00 0.00 0.00 2.71
5947 6196 3.006430 TGTTCAGTGGAGAATTAGCACGA 59.994 43.478 0.00 0.00 0.00 4.35
6364 6616 8.650490 TGATTACAATACATCTAAGGCATCTGA 58.350 33.333 0.00 0.00 0.00 3.27
6903 7166 4.945543 TGTTCTGTTGATGAGATGAATGGG 59.054 41.667 0.00 0.00 0.00 4.00
6906 7169 3.548770 TGTTGATGAGATGAATGGGCTC 58.451 45.455 0.00 0.00 0.00 4.70
6956 7219 6.530019 TTGATTCCCTTAATTTCCTGCTTC 57.470 37.500 0.00 0.00 0.00 3.86
6996 7259 5.112686 AGCTGTAAATTCGGATTGACTCTC 58.887 41.667 5.49 0.00 29.28 3.20
7114 7380 6.426328 GCCTCTCTACTTGATTATTGTGGATG 59.574 42.308 0.00 0.00 0.00 3.51
7146 7415 1.346378 AATCGCGTTTGCATTGCAGC 61.346 50.000 11.76 11.00 40.61 5.25
7292 7561 6.309737 GCTGTGATTCATTTTTGAGATGGTTC 59.690 38.462 0.00 0.00 0.00 3.62
7626 7907 7.797123 GGTGTTGTTTATTTCTCGTGTCTAAAG 59.203 37.037 0.00 0.00 0.00 1.85
7665 7947 6.153510 GGTTGAAGAGCATTCCCTTTCTTAAT 59.846 38.462 0.00 0.00 30.49 1.40
7705 7987 8.712363 GGATTTCACAGGCTTATTTTCTTTTTC 58.288 33.333 0.00 0.00 0.00 2.29
7733 8015 7.775053 AAAAAGGATTTCACAGGCTTATACA 57.225 32.000 0.00 0.00 37.28 2.29
7734 8016 7.775053 AAAAGGATTTCACAGGCTTATACAA 57.225 32.000 0.00 0.00 37.28 2.41
7735 8017 7.775053 AAAGGATTTCACAGGCTTATACAAA 57.225 32.000 0.00 0.00 27.08 2.83
7736 8018 7.775053 AAGGATTTCACAGGCTTATACAAAA 57.225 32.000 0.00 0.00 0.00 2.44
7737 8019 7.396540 AGGATTTCACAGGCTTATACAAAAG 57.603 36.000 0.00 0.00 0.00 2.27
7738 8020 7.175104 AGGATTTCACAGGCTTATACAAAAGA 58.825 34.615 0.00 0.00 0.00 2.52
7739 8021 7.337942 AGGATTTCACAGGCTTATACAAAAGAG 59.662 37.037 0.00 0.00 0.00 2.85
7740 8022 7.121315 GGATTTCACAGGCTTATACAAAAGAGT 59.879 37.037 0.00 0.00 0.00 3.24
7741 8023 9.162764 GATTTCACAGGCTTATACAAAAGAGTA 57.837 33.333 0.00 0.00 0.00 2.59
7742 8024 8.547967 TTTCACAGGCTTATACAAAAGAGTAG 57.452 34.615 0.00 0.00 0.00 2.57
7804 8168 3.189606 TCCTGAAAATCTTAGAGGCCCA 58.810 45.455 0.00 0.00 0.00 5.36
7805 8169 3.788142 TCCTGAAAATCTTAGAGGCCCAT 59.212 43.478 0.00 0.00 0.00 4.00
7807 8171 5.431731 TCCTGAAAATCTTAGAGGCCCATAA 59.568 40.000 0.00 0.00 0.00 1.90
7808 8172 5.767168 CCTGAAAATCTTAGAGGCCCATAAG 59.233 44.000 15.42 15.42 0.00 1.73
7882 8260 3.158676 GTGGTACCCTTGCAAACCATTA 58.841 45.455 20.63 0.00 43.53 1.90
7892 8270 5.511202 CCTTGCAAACCATTACAAAGGTCAT 60.511 40.000 0.00 0.00 37.07 3.06
7937 8315 1.654220 GTGTTGACAAGTGGCGCAT 59.346 52.632 10.83 0.00 0.00 4.73
8015 8393 9.176181 GCAAAACGTTTTAACTCTTGAATCATA 57.824 29.630 24.79 0.00 0.00 2.15
8032 8410 8.667076 TGAATCATATGTCGAAATCATGAACT 57.333 30.769 0.00 0.00 0.00 3.01
8033 8411 8.553696 TGAATCATATGTCGAAATCATGAACTG 58.446 33.333 0.00 0.00 0.00 3.16
8038 8416 9.345517 CATATGTCGAAATCATGAACTGTTTTT 57.654 29.630 0.00 0.00 29.03 1.94
8043 8421 9.180678 GTCGAAATCATGAACTGTTTTTATTGT 57.819 29.630 0.00 0.00 29.03 2.71
8056 8434 8.888716 ACTGTTTTTATTGTTGGATTTTTCACC 58.111 29.630 0.00 0.00 0.00 4.02
8072 8450 1.982226 TCACCCCGAGATCTTGGAAAA 59.018 47.619 28.24 9.43 36.15 2.29
8082 8460 5.237344 CGAGATCTTGGAAAATACATCCCAC 59.763 44.000 1.50 0.00 36.04 4.61
8155 8544 3.881220 AGTGAAACCAGAAAGACCGAAA 58.119 40.909 0.00 0.00 37.80 3.46
8156 8545 3.626217 AGTGAAACCAGAAAGACCGAAAC 59.374 43.478 0.00 0.00 37.80 2.78
8157 8546 2.946990 TGAAACCAGAAAGACCGAAACC 59.053 45.455 0.00 0.00 0.00 3.27
8158 8547 3.211865 GAAACCAGAAAGACCGAAACCT 58.788 45.455 0.00 0.00 0.00 3.50
8159 8548 4.141665 TGAAACCAGAAAGACCGAAACCTA 60.142 41.667 0.00 0.00 0.00 3.08
8160 8549 3.679824 ACCAGAAAGACCGAAACCTAG 57.320 47.619 0.00 0.00 0.00 3.02
8161 8550 3.236896 ACCAGAAAGACCGAAACCTAGA 58.763 45.455 0.00 0.00 0.00 2.43
8162 8551 3.644738 ACCAGAAAGACCGAAACCTAGAA 59.355 43.478 0.00 0.00 0.00 2.10
8163 8552 4.286291 ACCAGAAAGACCGAAACCTAGAAT 59.714 41.667 0.00 0.00 0.00 2.40
8164 8553 5.221864 ACCAGAAAGACCGAAACCTAGAATT 60.222 40.000 0.00 0.00 0.00 2.17
8165 8554 6.013984 ACCAGAAAGACCGAAACCTAGAATTA 60.014 38.462 0.00 0.00 0.00 1.40
8166 8555 6.877322 CCAGAAAGACCGAAACCTAGAATTAA 59.123 38.462 0.00 0.00 0.00 1.40
8167 8556 7.389607 CCAGAAAGACCGAAACCTAGAATTAAA 59.610 37.037 0.00 0.00 0.00 1.52
8168 8557 8.780249 CAGAAAGACCGAAACCTAGAATTAAAA 58.220 33.333 0.00 0.00 0.00 1.52
8169 8558 9.346005 AGAAAGACCGAAACCTAGAATTAAAAA 57.654 29.630 0.00 0.00 0.00 1.94
8186 8575 3.528597 AAAAAGCGTAACCCAAAAGCA 57.471 38.095 0.00 0.00 0.00 3.91
8187 8576 3.744238 AAAAGCGTAACCCAAAAGCAT 57.256 38.095 0.00 0.00 0.00 3.79
8188 8577 2.723124 AAGCGTAACCCAAAAGCATG 57.277 45.000 0.00 0.00 0.00 4.06
8189 8578 0.887933 AGCGTAACCCAAAAGCATGG 59.112 50.000 0.00 0.00 40.35 3.66
8190 8579 0.601057 GCGTAACCCAAAAGCATGGT 59.399 50.000 0.00 0.00 38.91 3.55
8191 8580 1.000394 GCGTAACCCAAAAGCATGGTT 60.000 47.619 3.82 3.82 44.31 3.67
8192 8581 2.671596 CGTAACCCAAAAGCATGGTTG 58.328 47.619 11.56 0.00 42.20 3.77
8193 8582 2.035321 CGTAACCCAAAAGCATGGTTGT 59.965 45.455 11.56 1.88 42.20 3.32
8194 8583 2.618442 AACCCAAAAGCATGGTTGTG 57.382 45.000 19.03 19.03 40.75 3.33
8195 8584 1.494960 ACCCAAAAGCATGGTTGTGT 58.505 45.000 22.89 10.41 38.91 3.72
8196 8585 1.412343 ACCCAAAAGCATGGTTGTGTC 59.588 47.619 22.89 0.00 38.91 3.67
8197 8586 1.411977 CCCAAAAGCATGGTTGTGTCA 59.588 47.619 22.89 0.00 38.91 3.58
8198 8587 2.037511 CCCAAAAGCATGGTTGTGTCAT 59.962 45.455 22.89 0.00 38.91 3.06
8199 8588 3.494749 CCCAAAAGCATGGTTGTGTCATT 60.495 43.478 22.89 5.73 38.91 2.57
8200 8589 4.128643 CCAAAAGCATGGTTGTGTCATTT 58.871 39.130 22.89 5.06 35.65 2.32
8201 8590 4.575645 CCAAAAGCATGGTTGTGTCATTTT 59.424 37.500 22.89 4.38 35.65 1.82
8202 8591 5.066246 CCAAAAGCATGGTTGTGTCATTTTT 59.934 36.000 22.89 3.72 35.65 1.94
8230 8619 4.929819 TTTTTGGGCAGACTACTTTTCC 57.070 40.909 0.00 0.00 0.00 3.13
8231 8620 2.579410 TTGGGCAGACTACTTTTCCC 57.421 50.000 0.00 0.00 0.00 3.97
8232 8621 1.742308 TGGGCAGACTACTTTTCCCT 58.258 50.000 0.00 0.00 34.89 4.20
8233 8622 2.062636 TGGGCAGACTACTTTTCCCTT 58.937 47.619 0.00 0.00 34.89 3.95
8234 8623 2.445525 TGGGCAGACTACTTTTCCCTTT 59.554 45.455 0.00 0.00 34.89 3.11
8235 8624 3.117284 TGGGCAGACTACTTTTCCCTTTT 60.117 43.478 0.00 0.00 34.89 2.27
8236 8625 3.506455 GGGCAGACTACTTTTCCCTTTTC 59.494 47.826 0.00 0.00 0.00 2.29
8237 8626 3.188667 GGCAGACTACTTTTCCCTTTTCG 59.811 47.826 0.00 0.00 0.00 3.46
8238 8627 4.062991 GCAGACTACTTTTCCCTTTTCGA 58.937 43.478 0.00 0.00 0.00 3.71
8239 8628 4.152580 GCAGACTACTTTTCCCTTTTCGAG 59.847 45.833 0.00 0.00 0.00 4.04
8240 8629 5.539048 CAGACTACTTTTCCCTTTTCGAGA 58.461 41.667 0.00 0.00 0.00 4.04
8241 8630 5.989777 CAGACTACTTTTCCCTTTTCGAGAA 59.010 40.000 0.00 0.00 0.00 2.87
8242 8631 6.146347 CAGACTACTTTTCCCTTTTCGAGAAG 59.854 42.308 8.69 8.69 0.00 2.85
8243 8632 4.755629 ACTACTTTTCCCTTTTCGAGAAGC 59.244 41.667 10.12 0.00 0.00 3.86
8244 8633 3.551846 ACTTTTCCCTTTTCGAGAAGCA 58.448 40.909 10.12 0.00 0.00 3.91
8245 8634 3.315470 ACTTTTCCCTTTTCGAGAAGCAC 59.685 43.478 10.12 0.00 0.00 4.40
8246 8635 2.631160 TTCCCTTTTCGAGAAGCACA 57.369 45.000 10.12 0.00 0.00 4.57
8247 8636 2.859165 TCCCTTTTCGAGAAGCACAT 57.141 45.000 10.12 0.00 0.00 3.21
8248 8637 2.426522 TCCCTTTTCGAGAAGCACATG 58.573 47.619 10.12 0.00 0.00 3.21
8249 8638 2.154462 CCCTTTTCGAGAAGCACATGT 58.846 47.619 10.12 0.00 0.00 3.21
8250 8639 2.554032 CCCTTTTCGAGAAGCACATGTT 59.446 45.455 10.12 0.00 0.00 2.71
8251 8640 3.558505 CCTTTTCGAGAAGCACATGTTG 58.441 45.455 10.12 0.00 0.00 3.33
8252 8641 3.003689 CCTTTTCGAGAAGCACATGTTGT 59.996 43.478 10.12 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.298014 GGCCAGACTTGCTAGCAGT 59.702 57.895 18.45 17.30 32.44 4.40
1 2 0.321919 TTGGCCAGACTTGCTAGCAG 60.322 55.000 18.45 14.22 32.44 4.24
2 3 0.329261 ATTGGCCAGACTTGCTAGCA 59.671 50.000 14.93 14.93 32.44 3.49
3 4 1.020437 GATTGGCCAGACTTGCTAGC 58.980 55.000 8.10 8.10 0.00 3.42
4 5 2.408271 TGATTGGCCAGACTTGCTAG 57.592 50.000 5.11 0.00 0.00 3.42
5 6 2.646930 CATGATTGGCCAGACTTGCTA 58.353 47.619 5.11 0.00 0.00 3.49
6 7 1.471119 CATGATTGGCCAGACTTGCT 58.529 50.000 5.11 0.00 0.00 3.91
7 8 0.179119 GCATGATTGGCCAGACTTGC 60.179 55.000 24.47 24.47 0.00 4.01
8 9 1.179152 TGCATGATTGGCCAGACTTG 58.821 50.000 5.11 13.21 0.00 3.16
9 10 2.029623 GATGCATGATTGGCCAGACTT 58.970 47.619 2.46 0.00 0.00 3.01
10 11 1.688772 GATGCATGATTGGCCAGACT 58.311 50.000 2.46 0.00 0.00 3.24
11 12 0.309922 CGATGCATGATTGGCCAGAC 59.690 55.000 2.46 4.79 0.00 3.51
12 13 1.449726 GCGATGCATGATTGGCCAGA 61.450 55.000 2.46 0.00 0.00 3.86
13 14 1.007734 GCGATGCATGATTGGCCAG 60.008 57.895 2.46 0.00 0.00 4.85
14 15 1.730451 CTGCGATGCATGATTGGCCA 61.730 55.000 2.46 0.00 38.13 5.36
15 16 1.007734 CTGCGATGCATGATTGGCC 60.008 57.895 2.46 0.00 38.13 5.36
16 17 1.660575 GCTGCGATGCATGATTGGC 60.661 57.895 2.46 0.00 38.13 4.52
17 18 1.370051 CGCTGCGATGCATGATTGG 60.370 57.895 18.66 0.00 38.13 3.16
18 19 0.928451 CACGCTGCGATGCATGATTG 60.928 55.000 30.47 9.13 38.13 2.67
19 20 1.354155 CACGCTGCGATGCATGATT 59.646 52.632 30.47 0.00 38.13 2.57
20 21 3.019800 CACGCTGCGATGCATGAT 58.980 55.556 30.47 0.00 38.13 2.45
21 22 3.868123 GCACGCTGCGATGCATGA 61.868 61.111 30.18 0.00 41.65 3.07
58 59 4.521062 CAGCTCGGCCTCTTCCCG 62.521 72.222 0.00 0.00 46.88 5.14
59 60 4.847444 GCAGCTCGGCCTCTTCCC 62.847 72.222 0.00 0.00 0.00 3.97
124 125 4.748144 CCTGGTGGGCAAGCTCCC 62.748 72.222 3.41 3.41 46.73 4.30
125 126 3.971702 ACCTGGTGGGCAAGCTCC 61.972 66.667 0.00 0.00 39.10 4.70
126 127 2.674380 CACCTGGTGGGCAAGCTC 60.674 66.667 19.23 0.00 39.10 4.09
127 128 2.983725 GAACACCTGGTGGGCAAGCT 62.984 60.000 29.05 4.90 37.94 3.74
128 129 2.521708 AACACCTGGTGGGCAAGC 60.522 61.111 29.05 0.00 37.94 4.01
129 130 2.260869 CGAACACCTGGTGGGCAAG 61.261 63.158 29.05 12.57 37.94 4.01
130 131 2.203280 CGAACACCTGGTGGGCAA 60.203 61.111 29.05 0.00 37.94 4.52
131 132 3.164977 TCGAACACCTGGTGGGCA 61.165 61.111 29.05 8.66 37.94 5.36
132 133 2.668550 GTCGAACACCTGGTGGGC 60.669 66.667 29.05 18.99 37.94 5.36
133 134 2.032071 GGTCGAACACCTGGTGGG 59.968 66.667 29.05 17.90 42.84 4.61
134 135 2.357034 CGGTCGAACACCTGGTGG 60.357 66.667 29.05 12.92 44.21 4.61
135 136 0.320421 ATTCGGTCGAACACCTGGTG 60.320 55.000 24.80 24.80 44.21 4.17
136 137 0.320421 CATTCGGTCGAACACCTGGT 60.320 55.000 8.00 0.00 44.21 4.00
137 138 1.635663 GCATTCGGTCGAACACCTGG 61.636 60.000 8.00 0.00 44.21 4.45
138 139 1.635663 GGCATTCGGTCGAACACCTG 61.636 60.000 8.00 4.29 44.21 4.00
139 140 1.375523 GGCATTCGGTCGAACACCT 60.376 57.895 8.00 0.00 44.21 4.00
140 141 3.174788 GGCATTCGGTCGAACACC 58.825 61.111 8.00 8.86 42.69 4.16
157 158 2.436997 TTTTGTGCATGTCCGCGTCG 62.437 55.000 4.92 0.00 33.35 5.12
158 159 0.109781 ATTTTGTGCATGTCCGCGTC 60.110 50.000 4.92 0.00 33.35 5.19
159 160 0.387112 CATTTTGTGCATGTCCGCGT 60.387 50.000 4.92 0.00 33.35 6.01
160 161 2.351823 CATTTTGTGCATGTCCGCG 58.648 52.632 0.00 0.00 33.35 6.46
170 171 0.667184 GGGCCAAGACGCATTTTGTG 60.667 55.000 4.39 0.00 0.00 3.33
171 172 1.665442 GGGCCAAGACGCATTTTGT 59.335 52.632 4.39 0.00 0.00 2.83
172 173 1.079888 GGGGCCAAGACGCATTTTG 60.080 57.895 4.39 0.00 0.00 2.44
173 174 2.635443 CGGGGCCAAGACGCATTTT 61.635 57.895 4.39 0.00 0.00 1.82
174 175 3.061848 CGGGGCCAAGACGCATTT 61.062 61.111 4.39 0.00 0.00 2.32
175 176 3.860930 AACGGGGCCAAGACGCATT 62.861 57.895 4.39 0.00 0.00 3.56
176 177 4.344865 AACGGGGCCAAGACGCAT 62.345 61.111 4.39 0.00 0.00 4.73
198 199 1.958902 TTGTATGGGGCGGTCGGTAC 61.959 60.000 0.00 0.00 0.00 3.34
199 200 1.263342 TTTGTATGGGGCGGTCGGTA 61.263 55.000 0.00 0.00 0.00 4.02
200 201 2.127027 TTTTGTATGGGGCGGTCGGT 62.127 55.000 0.00 0.00 0.00 4.69
201 202 0.961358 TTTTTGTATGGGGCGGTCGG 60.961 55.000 0.00 0.00 0.00 4.79
202 203 2.557451 TTTTTGTATGGGGCGGTCG 58.443 52.632 0.00 0.00 0.00 4.79
217 218 2.084013 GCGTCCGTATCCGCTTTTT 58.916 52.632 0.00 0.00 46.08 1.94
218 219 3.790177 GCGTCCGTATCCGCTTTT 58.210 55.556 0.00 0.00 46.08 2.27
225 226 4.541482 TGTCCGCGCGTCCGTATC 62.541 66.667 29.95 10.59 36.67 2.24
226 227 4.118995 TTGTCCGCGCGTCCGTAT 62.119 61.111 29.95 0.00 36.67 3.06
253 254 5.350091 CCAAACAGACACCGATTTTGTTTTT 59.650 36.000 0.00 0.00 39.25 1.94
254 255 4.867608 CCAAACAGACACCGATTTTGTTTT 59.132 37.500 0.00 0.00 39.25 2.43
255 256 4.158764 TCCAAACAGACACCGATTTTGTTT 59.841 37.500 0.00 0.00 41.23 2.83
256 257 3.697045 TCCAAACAGACACCGATTTTGTT 59.303 39.130 0.00 0.00 33.73 2.83
257 258 3.283751 TCCAAACAGACACCGATTTTGT 58.716 40.909 0.00 0.00 0.00 2.83
258 259 3.980646 TCCAAACAGACACCGATTTTG 57.019 42.857 0.00 0.00 0.00 2.44
259 260 3.188460 CGATCCAAACAGACACCGATTTT 59.812 43.478 0.00 0.00 0.00 1.82
260 261 2.742053 CGATCCAAACAGACACCGATTT 59.258 45.455 0.00 0.00 0.00 2.17
261 262 2.346803 CGATCCAAACAGACACCGATT 58.653 47.619 0.00 0.00 0.00 3.34
262 263 1.405526 CCGATCCAAACAGACACCGAT 60.406 52.381 0.00 0.00 0.00 4.18
263 264 0.037697 CCGATCCAAACAGACACCGA 60.038 55.000 0.00 0.00 0.00 4.69
264 265 1.635663 GCCGATCCAAACAGACACCG 61.636 60.000 0.00 0.00 0.00 4.94
265 266 1.305930 GGCCGATCCAAACAGACACC 61.306 60.000 0.00 0.00 34.01 4.16
266 267 1.305930 GGGCCGATCCAAACAGACAC 61.306 60.000 0.00 0.00 36.21 3.67
267 268 1.002624 GGGCCGATCCAAACAGACA 60.003 57.895 0.00 0.00 36.21 3.41
268 269 2.106683 CGGGCCGATCCAAACAGAC 61.107 63.158 24.41 0.00 36.21 3.51
269 270 2.119484 AACGGGCCGATCCAAACAGA 62.119 55.000 35.78 0.00 36.21 3.41
270 271 1.674322 AACGGGCCGATCCAAACAG 60.674 57.895 35.78 0.00 36.21 3.16
271 272 1.969064 CAACGGGCCGATCCAAACA 60.969 57.895 35.78 0.00 36.21 2.83
272 273 2.696759 CCAACGGGCCGATCCAAAC 61.697 63.158 35.78 0.00 36.21 2.93
273 274 2.360600 CCAACGGGCCGATCCAAA 60.361 61.111 35.78 0.00 36.21 3.28
274 275 3.323286 TCCAACGGGCCGATCCAA 61.323 61.111 35.78 10.89 36.21 3.53
275 276 3.781307 CTCCAACGGGCCGATCCA 61.781 66.667 35.78 12.53 36.21 3.41
276 277 3.325201 AACTCCAACGGGCCGATCC 62.325 63.158 35.78 0.00 0.00 3.36
277 278 2.106683 CAACTCCAACGGGCCGATC 61.107 63.158 35.78 0.00 0.00 3.69
278 279 2.046314 CAACTCCAACGGGCCGAT 60.046 61.111 35.78 20.37 0.00 4.18
281 282 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
282 283 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
283 284 1.002087 ACTAAGAGCAACTCCAACGGG 59.998 52.381 0.00 0.00 0.00 5.28
284 285 2.457366 ACTAAGAGCAACTCCAACGG 57.543 50.000 0.00 0.00 0.00 4.44
285 286 3.131396 ACAACTAAGAGCAACTCCAACG 58.869 45.455 0.00 0.00 0.00 4.10
286 287 5.298347 ACTACAACTAAGAGCAACTCCAAC 58.702 41.667 0.00 0.00 0.00 3.77
287 288 5.546621 ACTACAACTAAGAGCAACTCCAA 57.453 39.130 0.00 0.00 0.00 3.53
288 289 6.852420 ATACTACAACTAAGAGCAACTCCA 57.148 37.500 0.00 0.00 0.00 3.86
289 290 7.998580 AGTATACTACAACTAAGAGCAACTCC 58.001 38.462 2.75 0.00 0.00 3.85
290 291 8.130469 GGAGTATACTACAACTAAGAGCAACTC 58.870 40.741 10.44 0.00 0.00 3.01
291 292 7.068470 GGGAGTATACTACAACTAAGAGCAACT 59.932 40.741 17.06 0.00 0.00 3.16
292 293 7.068470 AGGGAGTATACTACAACTAAGAGCAAC 59.932 40.741 17.06 0.00 0.00 4.17
293 294 7.124052 AGGGAGTATACTACAACTAAGAGCAA 58.876 38.462 17.06 0.00 0.00 3.91
294 295 6.670617 AGGGAGTATACTACAACTAAGAGCA 58.329 40.000 17.06 0.00 0.00 4.26
295 296 6.207221 GGAGGGAGTATACTACAACTAAGAGC 59.793 46.154 17.06 0.00 0.00 4.09
296 297 6.427547 CGGAGGGAGTATACTACAACTAAGAG 59.572 46.154 17.06 0.00 0.00 2.85
297 298 6.294473 CGGAGGGAGTATACTACAACTAAGA 58.706 44.000 17.06 0.00 0.00 2.10
298 299 6.557291 CGGAGGGAGTATACTACAACTAAG 57.443 45.833 17.06 0.00 0.00 2.18
317 318 3.125316 GTGCAGAGTAAAAATGACCGGAG 59.875 47.826 9.46 0.00 0.00 4.63
318 319 3.071479 GTGCAGAGTAAAAATGACCGGA 58.929 45.455 9.46 0.00 0.00 5.14
319 320 2.811431 TGTGCAGAGTAAAAATGACCGG 59.189 45.455 0.00 0.00 0.00 5.28
320 321 4.685169 ATGTGCAGAGTAAAAATGACCG 57.315 40.909 0.00 0.00 0.00 4.79
321 322 5.048083 TCCAATGTGCAGAGTAAAAATGACC 60.048 40.000 0.00 0.00 0.00 4.02
322 323 6.012658 TCCAATGTGCAGAGTAAAAATGAC 57.987 37.500 0.00 0.00 0.00 3.06
323 324 6.839124 ATCCAATGTGCAGAGTAAAAATGA 57.161 33.333 0.00 0.00 0.00 2.57
324 325 7.622672 GCAAATCCAATGTGCAGAGTAAAAATG 60.623 37.037 0.00 0.00 38.19 2.32
325 326 6.369615 GCAAATCCAATGTGCAGAGTAAAAAT 59.630 34.615 0.00 0.00 38.19 1.82
326 327 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
327 328 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
328 329 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
329 330 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
330 331 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
331 332 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
332 333 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
333 334 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
334 335 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
335 336 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
336 337 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
337 338 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
338 339 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
339 340 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
340 341 4.039124 AGTTTGACTTTCGGCAAATCCAAT 59.961 37.500 0.00 0.00 36.51 3.16
341 342 3.383185 AGTTTGACTTTCGGCAAATCCAA 59.617 39.130 0.00 0.00 36.51 3.53
342 343 2.955660 AGTTTGACTTTCGGCAAATCCA 59.044 40.909 0.00 0.00 36.51 3.41
343 344 3.643159 AGTTTGACTTTCGGCAAATCC 57.357 42.857 0.00 0.00 36.51 3.01
344 345 4.318050 GCAAAGTTTGACTTTCGGCAAATC 60.318 41.667 19.82 0.00 44.47 2.17
345 346 3.555547 GCAAAGTTTGACTTTCGGCAAAT 59.444 39.130 19.82 0.00 44.47 2.32
346 347 2.926838 GCAAAGTTTGACTTTCGGCAAA 59.073 40.909 19.82 0.00 44.47 3.68
347 348 2.165437 AGCAAAGTTTGACTTTCGGCAA 59.835 40.909 19.82 0.00 44.47 4.52
348 349 1.748493 AGCAAAGTTTGACTTTCGGCA 59.252 42.857 19.82 0.00 44.47 5.69
349 350 2.492019 AGCAAAGTTTGACTTTCGGC 57.508 45.000 19.82 5.65 44.47 5.54
350 351 5.169836 ACTTAGCAAAGTTTGACTTTCGG 57.830 39.130 19.82 8.79 44.47 4.30
444 445 9.857656 ACAACACCAATATCATTAGATTCATCT 57.142 29.630 0.00 0.00 40.86 2.90
451 452 9.898152 TCACATAACAACACCAATATCATTAGA 57.102 29.630 0.00 0.00 0.00 2.10
454 455 9.806203 CATTCACATAACAACACCAATATCATT 57.194 29.630 0.00 0.00 0.00 2.57
455 456 8.970020 ACATTCACATAACAACACCAATATCAT 58.030 29.630 0.00 0.00 0.00 2.45
456 457 8.347004 ACATTCACATAACAACACCAATATCA 57.653 30.769 0.00 0.00 0.00 2.15
457 458 9.638239 AAACATTCACATAACAACACCAATATC 57.362 29.630 0.00 0.00 0.00 1.63
501 502 5.409520 TCGATCTCATTCAACTTTGACCAAG 59.590 40.000 0.00 0.00 36.83 3.61
502 503 5.179368 GTCGATCTCATTCAACTTTGACCAA 59.821 40.000 0.00 0.00 36.83 3.67
503 504 4.690748 GTCGATCTCATTCAACTTTGACCA 59.309 41.667 0.00 0.00 36.83 4.02
504 505 4.932200 AGTCGATCTCATTCAACTTTGACC 59.068 41.667 0.00 0.00 36.83 4.02
505 506 6.473397 AAGTCGATCTCATTCAACTTTGAC 57.527 37.500 0.00 0.00 36.83 3.18
506 507 5.346011 CGAAGTCGATCTCATTCAACTTTGA 59.654 40.000 0.00 0.00 43.02 2.69
507 508 5.445142 CCGAAGTCGATCTCATTCAACTTTG 60.445 44.000 1.43 0.00 43.02 2.77
508 509 4.627467 CCGAAGTCGATCTCATTCAACTTT 59.373 41.667 1.43 0.00 43.02 2.66
509 510 4.177026 CCGAAGTCGATCTCATTCAACTT 58.823 43.478 1.43 0.00 43.02 2.66
510 511 3.193691 ACCGAAGTCGATCTCATTCAACT 59.806 43.478 1.43 0.00 43.02 3.16
511 512 3.512680 ACCGAAGTCGATCTCATTCAAC 58.487 45.455 1.43 0.00 43.02 3.18
512 513 3.192633 TGACCGAAGTCGATCTCATTCAA 59.807 43.478 1.43 0.00 46.74 2.69
513 514 2.752903 TGACCGAAGTCGATCTCATTCA 59.247 45.455 1.43 0.00 46.74 2.57
514 515 3.422417 TGACCGAAGTCGATCTCATTC 57.578 47.619 1.43 0.00 46.74 2.67
515 516 3.868757 TTGACCGAAGTCGATCTCATT 57.131 42.857 1.43 0.00 46.74 2.57
516 517 3.512680 GTTTGACCGAAGTCGATCTCAT 58.487 45.455 1.43 0.00 46.74 2.90
517 518 2.352421 GGTTTGACCGAAGTCGATCTCA 60.352 50.000 1.43 0.00 46.74 3.27
518 519 2.094649 AGGTTTGACCGAAGTCGATCTC 60.095 50.000 1.43 0.00 46.74 2.75
519 520 1.893801 AGGTTTGACCGAAGTCGATCT 59.106 47.619 1.43 0.00 46.74 2.75
520 521 2.365408 AGGTTTGACCGAAGTCGATC 57.635 50.000 1.43 0.00 46.74 3.69
521 522 3.947910 TTAGGTTTGACCGAAGTCGAT 57.052 42.857 1.43 0.00 46.74 3.59
522 523 3.947910 ATTAGGTTTGACCGAAGTCGA 57.052 42.857 1.43 0.00 46.74 4.20
523 524 4.025979 GCATATTAGGTTTGACCGAAGTCG 60.026 45.833 0.00 0.00 46.74 4.18
524 525 4.873827 TGCATATTAGGTTTGACCGAAGTC 59.126 41.667 0.00 0.00 44.90 3.01
525 526 4.839121 TGCATATTAGGTTTGACCGAAGT 58.161 39.130 0.00 0.00 44.90 3.01
526 527 5.116180 TCTGCATATTAGGTTTGACCGAAG 58.884 41.667 0.00 0.00 44.90 3.79
527 528 5.092554 TCTGCATATTAGGTTTGACCGAA 57.907 39.130 0.00 0.00 44.90 4.30
528 529 4.161565 ACTCTGCATATTAGGTTTGACCGA 59.838 41.667 0.00 0.00 44.90 4.69
529 530 4.442706 ACTCTGCATATTAGGTTTGACCG 58.557 43.478 0.00 0.00 44.90 4.79
530 531 7.859325 TTTACTCTGCATATTAGGTTTGACC 57.141 36.000 0.00 0.00 38.99 4.02
535 536 8.903820 GGTCATTTTTACTCTGCATATTAGGTT 58.096 33.333 0.00 0.00 0.00 3.50
536 537 7.226720 CGGTCATTTTTACTCTGCATATTAGGT 59.773 37.037 0.00 0.00 0.00 3.08
537 538 7.307989 CCGGTCATTTTTACTCTGCATATTAGG 60.308 40.741 0.00 0.00 0.00 2.69
538 539 7.441157 TCCGGTCATTTTTACTCTGCATATTAG 59.559 37.037 0.00 0.00 0.00 1.73
539 540 7.276658 TCCGGTCATTTTTACTCTGCATATTA 58.723 34.615 0.00 0.00 0.00 0.98
540 541 6.119536 TCCGGTCATTTTTACTCTGCATATT 58.880 36.000 0.00 0.00 0.00 1.28
541 542 5.680619 TCCGGTCATTTTTACTCTGCATAT 58.319 37.500 0.00 0.00 0.00 1.78
542 543 5.092554 TCCGGTCATTTTTACTCTGCATA 57.907 39.130 0.00 0.00 0.00 3.14
543 544 3.941483 CTCCGGTCATTTTTACTCTGCAT 59.059 43.478 0.00 0.00 0.00 3.96
544 545 3.334691 CTCCGGTCATTTTTACTCTGCA 58.665 45.455 0.00 0.00 0.00 4.41
545 546 2.678336 CCTCCGGTCATTTTTACTCTGC 59.322 50.000 0.00 0.00 0.00 4.26
546 547 3.055385 TCCCTCCGGTCATTTTTACTCTG 60.055 47.826 0.00 0.00 0.00 3.35
547 548 3.178865 TCCCTCCGGTCATTTTTACTCT 58.821 45.455 0.00 0.00 0.00 3.24
548 549 3.055312 ACTCCCTCCGGTCATTTTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
549 550 2.910977 ACTCCCTCCGGTCATTTTTACT 59.089 45.455 0.00 0.00 0.00 2.24
550 551 3.345508 ACTCCCTCCGGTCATTTTTAC 57.654 47.619 0.00 0.00 0.00 2.01
551 552 3.119029 CGTACTCCCTCCGGTCATTTTTA 60.119 47.826 0.00 0.00 0.00 1.52
552 553 2.354403 CGTACTCCCTCCGGTCATTTTT 60.354 50.000 0.00 0.00 0.00 1.94
553 554 1.206371 CGTACTCCCTCCGGTCATTTT 59.794 52.381 0.00 0.00 0.00 1.82
554 555 0.822164 CGTACTCCCTCCGGTCATTT 59.178 55.000 0.00 0.00 0.00 2.32
555 556 0.324091 ACGTACTCCCTCCGGTCATT 60.324 55.000 0.00 0.00 0.00 2.57
556 557 0.324091 AACGTACTCCCTCCGGTCAT 60.324 55.000 0.00 0.00 0.00 3.06
557 558 0.540365 AAACGTACTCCCTCCGGTCA 60.540 55.000 0.00 0.00 0.00 4.02
558 559 0.172127 GAAACGTACTCCCTCCGGTC 59.828 60.000 0.00 0.00 0.00 4.79
559 560 0.540365 TGAAACGTACTCCCTCCGGT 60.540 55.000 0.00 0.00 0.00 5.28
560 561 0.604578 TTGAAACGTACTCCCTCCGG 59.395 55.000 0.00 0.00 0.00 5.14
561 562 2.667473 ATTGAAACGTACTCCCTCCG 57.333 50.000 0.00 0.00 0.00 4.63
562 563 6.872547 GGAATATATTGAAACGTACTCCCTCC 59.127 42.308 1.78 0.00 0.00 4.30
563 564 6.872547 GGGAATATATTGAAACGTACTCCCTC 59.127 42.308 1.78 0.00 36.61 4.30
564 565 6.557633 AGGGAATATATTGAAACGTACTCCCT 59.442 38.462 1.78 5.65 43.46 4.20
565 566 6.766429 AGGGAATATATTGAAACGTACTCCC 58.234 40.000 1.78 3.31 39.31 4.30
566 567 6.872547 GGAGGGAATATATTGAAACGTACTCC 59.127 42.308 1.78 4.63 0.00 3.85
567 568 6.585322 CGGAGGGAATATATTGAAACGTACTC 59.415 42.308 1.78 0.00 0.00 2.59
568 569 6.041296 ACGGAGGGAATATATTGAAACGTACT 59.959 38.462 1.78 0.00 0.00 2.73
569 570 6.218746 ACGGAGGGAATATATTGAAACGTAC 58.781 40.000 1.78 0.00 0.00 3.67
570 571 6.409524 ACGGAGGGAATATATTGAAACGTA 57.590 37.500 1.78 0.00 0.00 3.57
571 572 5.286267 ACGGAGGGAATATATTGAAACGT 57.714 39.130 1.78 4.61 0.00 3.99
572 573 6.482308 AGAAACGGAGGGAATATATTGAAACG 59.518 38.462 1.78 4.02 0.00 3.60
573 574 7.803279 AGAAACGGAGGGAATATATTGAAAC 57.197 36.000 1.78 0.00 0.00 2.78
574 575 9.908747 TTTAGAAACGGAGGGAATATATTGAAA 57.091 29.630 1.78 0.00 0.00 2.69
583 584 8.881262 AGACATATATTTAGAAACGGAGGGAAT 58.119 33.333 0.00 0.00 0.00 3.01
584 585 8.258850 AGACATATATTTAGAAACGGAGGGAA 57.741 34.615 0.00 0.00 0.00 3.97
585 586 7.850935 AGACATATATTTAGAAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
586 587 8.904099 AAAGACATATATTTAGAAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
606 607 9.399403 GACTCCATTTGAAATGTCTAAAAAGAC 57.601 33.333 15.93 0.00 39.15 3.01
607 608 9.354673 AGACTCCATTTGAAATGTCTAAAAAGA 57.645 29.630 15.93 3.69 33.67 2.52
608 609 9.971922 AAGACTCCATTTGAAATGTCTAAAAAG 57.028 29.630 15.93 5.21 34.23 2.27
614 615 9.354673 TCTAAAAAGACTCCATTTGAAATGTCT 57.645 29.630 15.93 9.80 36.49 3.41
668 669 9.591404 CGAAGCAAAATGAATGAATCTATACTC 57.409 33.333 0.00 0.00 0.00 2.59
669 670 9.113838 ACGAAGCAAAATGAATGAATCTATACT 57.886 29.630 0.00 0.00 0.00 2.12
676 677 9.023967 GCTAAATACGAAGCAAAATGAATGAAT 57.976 29.630 0.00 0.00 38.63 2.57
677 678 7.487829 GGCTAAATACGAAGCAAAATGAATGAA 59.512 33.333 0.00 0.00 40.61 2.57
678 679 6.972328 GGCTAAATACGAAGCAAAATGAATGA 59.028 34.615 0.00 0.00 40.61 2.57
679 680 6.751425 TGGCTAAATACGAAGCAAAATGAATG 59.249 34.615 0.00 0.00 40.61 2.67
680 681 6.751888 GTGGCTAAATACGAAGCAAAATGAAT 59.248 34.615 0.00 0.00 40.61 2.57
681 682 6.072175 AGTGGCTAAATACGAAGCAAAATGAA 60.072 34.615 0.00 0.00 40.61 2.57
682 683 5.414454 AGTGGCTAAATACGAAGCAAAATGA 59.586 36.000 0.00 0.00 40.61 2.57
683 684 5.640732 AGTGGCTAAATACGAAGCAAAATG 58.359 37.500 0.00 0.00 40.61 2.32
684 685 5.897377 AGTGGCTAAATACGAAGCAAAAT 57.103 34.783 0.00 0.00 40.61 1.82
685 686 5.457140 CAAGTGGCTAAATACGAAGCAAAA 58.543 37.500 0.00 0.00 40.61 2.44
686 687 4.614993 GCAAGTGGCTAAATACGAAGCAAA 60.615 41.667 0.00 0.00 40.61 3.68
687 688 3.119990 GCAAGTGGCTAAATACGAAGCAA 60.120 43.478 0.00 0.00 40.61 3.91
688 689 2.418628 GCAAGTGGCTAAATACGAAGCA 59.581 45.455 0.00 0.00 40.61 3.91
689 690 3.052940 GCAAGTGGCTAAATACGAAGC 57.947 47.619 0.00 0.00 40.25 3.86
701 702 6.843069 TTTTTAAAGATTTCAGCAAGTGGC 57.157 33.333 0.00 0.00 45.30 5.01
722 723 6.602009 CCCTCCGTTCTCAAATATAGGTTTTT 59.398 38.462 0.00 0.00 0.00 1.94
723 724 6.069847 TCCCTCCGTTCTCAAATATAGGTTTT 60.070 38.462 0.00 0.00 0.00 2.43
724 725 5.427481 TCCCTCCGTTCTCAAATATAGGTTT 59.573 40.000 0.00 0.00 0.00 3.27
725 726 4.966805 TCCCTCCGTTCTCAAATATAGGTT 59.033 41.667 0.00 0.00 0.00 3.50
726 727 4.553678 TCCCTCCGTTCTCAAATATAGGT 58.446 43.478 0.00 0.00 0.00 3.08
727 728 4.589374 ACTCCCTCCGTTCTCAAATATAGG 59.411 45.833 0.00 0.00 0.00 2.57
728 729 5.793030 ACTCCCTCCGTTCTCAAATATAG 57.207 43.478 0.00 0.00 0.00 1.31
729 730 6.371278 AGTACTCCCTCCGTTCTCAAATATA 58.629 40.000 0.00 0.00 0.00 0.86
730 731 5.209659 AGTACTCCCTCCGTTCTCAAATAT 58.790 41.667 0.00 0.00 0.00 1.28
731 732 4.607239 AGTACTCCCTCCGTTCTCAAATA 58.393 43.478 0.00 0.00 0.00 1.40
732 733 3.442076 AGTACTCCCTCCGTTCTCAAAT 58.558 45.455 0.00 0.00 0.00 2.32
733 734 2.885616 AGTACTCCCTCCGTTCTCAAA 58.114 47.619 0.00 0.00 0.00 2.69
734 735 2.561419 CAAGTACTCCCTCCGTTCTCAA 59.439 50.000 0.00 0.00 0.00 3.02
735 736 2.168496 CAAGTACTCCCTCCGTTCTCA 58.832 52.381 0.00 0.00 0.00 3.27
736 737 2.094649 CACAAGTACTCCCTCCGTTCTC 60.095 54.545 0.00 0.00 0.00 2.87
737 738 1.893801 CACAAGTACTCCCTCCGTTCT 59.106 52.381 0.00 0.00 0.00 3.01
738 739 1.617357 ACACAAGTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95
739 740 1.713297 ACACAAGTACTCCCTCCGTT 58.287 50.000 0.00 0.00 0.00 4.44
740 741 2.592102 TACACAAGTACTCCCTCCGT 57.408 50.000 0.00 0.00 0.00 4.69
741 742 3.700038 AGATTACACAAGTACTCCCTCCG 59.300 47.826 0.00 0.00 32.09 4.63
742 743 5.678955 AAGATTACACAAGTACTCCCTCC 57.321 43.478 0.00 0.00 32.09 4.30
743 744 7.159372 TGAAAAGATTACACAAGTACTCCCTC 58.841 38.462 0.00 0.00 32.09 4.30
744 745 7.074653 TGAAAAGATTACACAAGTACTCCCT 57.925 36.000 0.00 0.00 32.09 4.20
745 746 7.923414 ATGAAAAGATTACACAAGTACTCCC 57.077 36.000 0.00 0.00 32.09 4.30
799 800 2.752903 AGCGCCCGAATTTTGAATTACT 59.247 40.909 2.29 0.00 0.00 2.24
800 801 3.145212 AGCGCCCGAATTTTGAATTAC 57.855 42.857 2.29 0.00 0.00 1.89
802 803 4.385358 AATAGCGCCCGAATTTTGAATT 57.615 36.364 2.29 0.00 0.00 2.17
1084 1108 1.689273 GAGGGAGTTCCATATGCGAGT 59.311 52.381 0.00 0.00 38.24 4.18
1113 1137 0.254178 AGTTCGGTAGCGTAGGGAGA 59.746 55.000 14.79 0.00 0.00 3.71
1213 1237 1.218196 GTAGATGGGGAGTGGGAGAGA 59.782 57.143 0.00 0.00 0.00 3.10
1331 1355 3.381045 CAGTCAACGAGAGCACAAAGTA 58.619 45.455 0.00 0.00 0.00 2.24
1332 1356 2.205074 CAGTCAACGAGAGCACAAAGT 58.795 47.619 0.00 0.00 0.00 2.66
1336 1360 0.598419 CAGCAGTCAACGAGAGCACA 60.598 55.000 0.00 0.00 0.00 4.57
1354 1378 4.556233 CACAAATCTACTCCGTTCTGTCA 58.444 43.478 0.00 0.00 0.00 3.58
1363 1387 5.006746 CACTAAATCCGCACAAATCTACTCC 59.993 44.000 0.00 0.00 0.00 3.85
1364 1388 5.581085 ACACTAAATCCGCACAAATCTACTC 59.419 40.000 0.00 0.00 0.00 2.59
1405 1429 4.750098 CGTTTCTACAAGTTCATCACAGGT 59.250 41.667 0.00 0.00 0.00 4.00
1408 1432 5.113383 ACACGTTTCTACAAGTTCATCACA 58.887 37.500 0.00 0.00 0.00 3.58
1448 1472 3.473625 GTGGGTCCTATATTTTGGGTCG 58.526 50.000 0.00 0.00 0.00 4.79
1451 1475 3.204382 AGTGGTGGGTCCTATATTTTGGG 59.796 47.826 0.00 0.00 37.07 4.12
1784 1819 7.411486 TGTGAGTTTGTTCCCTGAAAAATTA 57.589 32.000 0.00 0.00 0.00 1.40
1786 1821 5.930837 TGTGAGTTTGTTCCCTGAAAAAT 57.069 34.783 0.00 0.00 0.00 1.82
2044 2079 4.572985 TCAGCAGAAAGTTGAAACCATG 57.427 40.909 0.00 0.00 34.28 3.66
2479 2518 1.777878 TGGTAGAGTTTGCCCCTGAAA 59.222 47.619 0.00 0.00 0.00 2.69
2614 2653 6.228616 ACTATCTAGCTTCTGGAGGTTTTC 57.771 41.667 0.00 0.00 37.30 2.29
2629 2668 7.616313 ACCTGAGAGGAAACAAAACTATCTAG 58.384 38.462 0.00 0.00 37.67 2.43
2694 2735 2.820178 TGTGCTATGAGACTGGGAAGA 58.180 47.619 0.00 0.00 0.00 2.87
2703 2744 5.163405 GGTCTAAGGTCATTGTGCTATGAGA 60.163 44.000 0.00 0.00 35.32 3.27
2938 2979 4.479158 TCTAAAATCCACCTGCCTGTTTT 58.521 39.130 0.00 0.00 0.00 2.43
3255 3297 6.939163 ACAGGATTAATTCAGATACCTCATGC 59.061 38.462 0.00 0.00 0.00 4.06
3652 3709 8.469200 TCTGCCTTCATTAAATACCTTGATTTG 58.531 33.333 0.00 0.00 31.51 2.32
3661 3718 6.456795 AAAGCCTCTGCCTTCATTAAATAC 57.543 37.500 0.00 0.00 38.69 1.89
3726 3783 0.321122 CTTCTGGCAGGACCTCACAC 60.321 60.000 15.73 0.00 40.22 3.82
3740 3797 4.268405 GTGACAAACAAACCAATGCTTCTG 59.732 41.667 0.00 0.00 0.00 3.02
4001 4062 3.243501 GCAATGCTTTCTGGACTTCAACA 60.244 43.478 0.00 0.00 0.00 3.33
4014 4075 2.229784 GACCAGCTTGTAGCAATGCTTT 59.770 45.455 14.85 0.00 45.56 3.51
4064 4126 5.942236 AGTCATGATGTGAGCACAATAACTT 59.058 36.000 7.46 0.00 45.41 2.66
4073 4135 0.616891 AGGCAGTCATGATGTGAGCA 59.383 50.000 11.25 0.00 37.56 4.26
4116 4178 7.816513 TCGAATAGCTCATCTCTAATGGAAATG 59.183 37.037 0.00 0.00 0.00 2.32
4345 4410 5.534207 TTTTAACCGTAAGTCCTGTCTCA 57.466 39.130 0.00 0.00 0.00 3.27
4453 4519 6.711277 TGGATTGCTAGACAAAGAACAGTAT 58.289 36.000 0.00 0.00 42.86 2.12
4504 4571 0.105039 GGAGAGAGTAATGGGTGCGG 59.895 60.000 0.00 0.00 0.00 5.69
4505 4572 0.824109 TGGAGAGAGTAATGGGTGCG 59.176 55.000 0.00 0.00 0.00 5.34
4561 4628 9.293404 CCACATATCAATGGAGAAATTATCAGT 57.707 33.333 0.00 0.00 38.34 3.41
4571 4638 7.135591 TCACATAACCACATATCAATGGAGA 57.864 36.000 4.52 0.00 39.46 3.71
4572 4639 7.806409 TTCACATAACCACATATCAATGGAG 57.194 36.000 4.52 0.00 39.46 3.86
4676 4743 4.278170 TGTGAATTGGTTAAGACAAGGCAG 59.722 41.667 0.00 0.00 0.00 4.85
4684 4751 8.347004 TGCTTATGATTGTGAATTGGTTAAGA 57.653 30.769 0.00 0.00 0.00 2.10
4713 4780 8.908786 ATGTCGGTAGATTCATATTCAAATGT 57.091 30.769 0.00 0.00 0.00 2.71
4746 4813 6.016360 TGACTTTGACCAACAATTACTCCATG 60.016 38.462 0.00 0.00 38.36 3.66
4856 4923 7.944729 AATGAAAGTACATAAGGAACAGCAT 57.055 32.000 0.00 0.00 0.00 3.79
4886 4953 9.630098 CGCTCCAAAATGAAGCAATATTATTAT 57.370 29.630 0.00 0.00 0.00 1.28
4912 4983 5.531287 AGATTTTCACTGGGATAATTACGCC 59.469 40.000 0.00 0.00 28.85 5.68
5180 5369 3.120060 GCAACAACTGGCTGAAGATACAG 60.120 47.826 0.00 0.00 40.43 2.74
5181 5370 2.813754 GCAACAACTGGCTGAAGATACA 59.186 45.455 0.00 0.00 0.00 2.29
5229 5418 5.048434 GCTCCAGAGTAAGCAACAAGAAATT 60.048 40.000 0.00 0.00 38.42 1.82
5264 5454 0.606673 GGCAGAACAGGAAGGTGGAC 60.607 60.000 0.00 0.00 0.00 4.02
5377 5569 3.003480 AGTTCAGATGGCTTTCTTACGC 58.997 45.455 0.00 0.00 0.00 4.42
5420 5612 5.098211 GCTGCTATGACCAAGATTTTTCAC 58.902 41.667 0.00 0.00 0.00 3.18
5640 5889 6.515696 CGACTCTCTGGATGCAATTGTAGATA 60.516 42.308 7.40 0.00 0.00 1.98
5846 6095 5.010922 AGCTCAATGCACAAATAAACAGGAA 59.989 36.000 0.00 0.00 45.94 3.36
5973 6222 3.951306 TGAGTTGAATGCACAAGAAACG 58.049 40.909 0.00 0.00 0.00 3.60
5974 6223 5.343249 ACTTGAGTTGAATGCACAAGAAAC 58.657 37.500 15.47 5.08 39.84 2.78
6354 6606 0.957395 CCACTTGCGTCAGATGCCTT 60.957 55.000 12.29 0.00 0.00 4.35
6364 6616 3.675228 CGAAGACCTATAACCACTTGCGT 60.675 47.826 0.00 0.00 0.00 5.24
6686 6949 5.849357 ACACGTCAAAATTAATGCGTAGA 57.151 34.783 10.74 0.00 32.30 2.59
6733 6996 0.039256 CCAACAGGCCAAATGTGACG 60.039 55.000 5.01 0.00 0.00 4.35
6842 7105 6.575201 CAGTTTATTCGTCTTCAAAGTTCTGC 59.425 38.462 0.00 0.00 0.00 4.26
6903 7166 2.612212 TGAAAGTTCCTGACAAACGAGC 59.388 45.455 0.00 0.00 0.00 5.03
6906 7169 4.616181 AGTTGAAAGTTCCTGACAAACG 57.384 40.909 0.00 0.00 0.00 3.60
6956 7219 3.057547 CTCGCCTCCTCGTCCTGTG 62.058 68.421 0.00 0.00 0.00 3.66
6996 7259 9.209175 GCTTTGTATAATCTATCAAGGGTGTAG 57.791 37.037 0.00 0.00 0.00 2.74
7114 7380 2.700773 GCGATTTGGTCCACAGGCC 61.701 63.158 0.00 0.00 0.00 5.19
7146 7415 7.466996 GCCAGATTAAACATGTCATCTCTCAAG 60.467 40.741 0.00 0.00 0.00 3.02
7435 7716 6.185852 CAACACACAGATTGCAATAGATGA 57.814 37.500 12.97 0.00 0.00 2.92
7477 7758 1.524849 TGTAGCAGCAACGCCACAA 60.525 52.632 0.00 0.00 30.38 3.33
7546 7827 1.319079 GCAACAAACACAAACGAACGG 59.681 47.619 0.00 0.00 0.00 4.44
7626 7907 2.088950 TCAACCTCGGAATCGTTTCC 57.911 50.000 14.23 14.23 46.85 3.13
7642 7924 8.739972 GTTATTAAGAAAGGGAATGCTCTTCAA 58.260 33.333 0.00 0.00 32.33 2.69
7665 7947 7.432869 CCTGTGAAATCCTGTTCATTTTGTTA 58.567 34.615 0.00 0.00 39.61 2.41
7733 8015 8.895141 AAAAGCCCAATAATACCTACTCTTTT 57.105 30.769 0.00 0.00 0.00 2.27
7734 8016 9.628500 CTAAAAGCCCAATAATACCTACTCTTT 57.372 33.333 0.00 0.00 0.00 2.52
7735 8017 7.720074 GCTAAAAGCCCAATAATACCTACTCTT 59.280 37.037 0.00 0.00 34.48 2.85
7736 8018 7.225011 GCTAAAAGCCCAATAATACCTACTCT 58.775 38.462 0.00 0.00 34.48 3.24
7737 8019 7.436430 GCTAAAAGCCCAATAATACCTACTC 57.564 40.000 0.00 0.00 34.48 2.59
7804 8168 6.208797 GGCTAAACTTTTCACACTTCCCTTAT 59.791 38.462 0.00 0.00 0.00 1.73
7805 8169 5.533528 GGCTAAACTTTTCACACTTCCCTTA 59.466 40.000 0.00 0.00 0.00 2.69
7807 8171 3.889538 GGCTAAACTTTTCACACTTCCCT 59.110 43.478 0.00 0.00 0.00 4.20
7808 8172 3.889538 AGGCTAAACTTTTCACACTTCCC 59.110 43.478 0.00 0.00 0.00 3.97
7810 8174 5.505819 GGTGAGGCTAAACTTTTCACACTTC 60.506 44.000 5.44 0.00 39.81 3.01
7811 8175 4.338400 GGTGAGGCTAAACTTTTCACACTT 59.662 41.667 5.44 0.00 39.81 3.16
7813 8177 3.004419 GGGTGAGGCTAAACTTTTCACAC 59.996 47.826 5.44 0.00 39.81 3.82
7814 8178 3.117663 AGGGTGAGGCTAAACTTTTCACA 60.118 43.478 5.44 0.00 39.81 3.58
7882 8260 4.522789 GGGTAATCAACACATGACCTTTGT 59.477 41.667 0.00 0.00 41.93 2.83
7926 8304 0.109781 GTGGTACAATGCGCCACTTG 60.110 55.000 16.14 8.96 46.57 3.16
7937 8315 3.132646 ACAGGTTACGACAAGTGGTACAA 59.867 43.478 0.00 0.00 44.16 2.41
7989 8367 7.444558 TGATTCAAGAGTTAAAACGTTTTGC 57.555 32.000 31.26 23.43 0.00 3.68
7995 8373 8.592155 TCGACATATGATTCAAGAGTTAAAACG 58.408 33.333 10.38 0.00 0.00 3.60
8002 8380 8.771766 CATGATTTCGACATATGATTCAAGAGT 58.228 33.333 10.38 0.00 0.00 3.24
8015 8393 9.912634 AATAAAAACAGTTCATGATTTCGACAT 57.087 25.926 0.00 0.00 33.18 3.06
8032 8410 7.283354 GGGGTGAAAAATCCAACAATAAAAACA 59.717 33.333 0.00 0.00 0.00 2.83
8033 8411 7.519168 CGGGGTGAAAAATCCAACAATAAAAAC 60.519 37.037 0.00 0.00 0.00 2.43
8038 8416 4.408276 TCGGGGTGAAAAATCCAACAATA 58.592 39.130 0.00 0.00 0.00 1.90
8043 8421 2.961531 TCTCGGGGTGAAAAATCCAA 57.038 45.000 0.00 0.00 0.00 3.53
8056 8434 4.757149 GGATGTATTTTCCAAGATCTCGGG 59.243 45.833 0.00 3.39 33.21 5.14
8072 8450 7.281549 GTCAAAACCTATTAACGTGGGATGTAT 59.718 37.037 0.00 0.00 0.00 2.29
8136 8525 2.946990 GGTTTCGGTCTTTCTGGTTTCA 59.053 45.455 0.00 0.00 0.00 2.69
8166 8555 3.528597 TGCTTTTGGGTTACGCTTTTT 57.471 38.095 0.36 0.00 0.00 1.94
8167 8556 3.389221 CATGCTTTTGGGTTACGCTTTT 58.611 40.909 0.36 0.00 0.00 2.27
8168 8557 2.288763 CCATGCTTTTGGGTTACGCTTT 60.289 45.455 0.36 0.00 32.80 3.51
8169 8558 1.272212 CCATGCTTTTGGGTTACGCTT 59.728 47.619 0.36 0.00 32.80 4.68
8170 8559 0.887933 CCATGCTTTTGGGTTACGCT 59.112 50.000 0.36 0.00 32.80 5.07
8171 8560 0.601057 ACCATGCTTTTGGGTTACGC 59.399 50.000 5.99 0.00 41.35 4.42
8172 8561 2.035321 ACAACCATGCTTTTGGGTTACG 59.965 45.455 0.00 0.00 42.78 3.18
8173 8562 3.181470 ACACAACCATGCTTTTGGGTTAC 60.181 43.478 2.82 0.00 42.78 2.50
8174 8563 3.034635 ACACAACCATGCTTTTGGGTTA 58.965 40.909 2.82 0.00 42.78 2.85
8175 8564 1.836802 ACACAACCATGCTTTTGGGTT 59.163 42.857 2.82 0.00 45.42 4.11
8176 8565 1.412343 GACACAACCATGCTTTTGGGT 59.588 47.619 7.36 7.36 42.14 4.51
8177 8566 1.411977 TGACACAACCATGCTTTTGGG 59.588 47.619 5.99 1.73 41.35 4.12
8178 8567 2.886862 TGACACAACCATGCTTTTGG 57.113 45.000 5.30 0.14 42.82 3.28
8179 8568 5.738118 AAAATGACACAACCATGCTTTTG 57.262 34.783 0.00 0.00 0.00 2.44
8209 8598 3.639561 GGGAAAAGTAGTCTGCCCAAAAA 59.360 43.478 0.00 0.00 33.41 1.94
8210 8599 3.117284 AGGGAAAAGTAGTCTGCCCAAAA 60.117 43.478 0.00 0.00 34.71 2.44
8211 8600 2.445525 AGGGAAAAGTAGTCTGCCCAAA 59.554 45.455 0.00 0.00 34.71 3.28
8212 8601 2.062636 AGGGAAAAGTAGTCTGCCCAA 58.937 47.619 0.00 0.00 34.71 4.12
8213 8602 1.742308 AGGGAAAAGTAGTCTGCCCA 58.258 50.000 0.00 0.00 34.71 5.36
8214 8603 2.881111 AAGGGAAAAGTAGTCTGCCC 57.119 50.000 0.00 0.00 33.38 5.36
8215 8604 3.188667 CGAAAAGGGAAAAGTAGTCTGCC 59.811 47.826 0.00 0.00 0.00 4.85
8216 8605 4.062991 TCGAAAAGGGAAAAGTAGTCTGC 58.937 43.478 0.00 0.00 0.00 4.26
8217 8606 5.539048 TCTCGAAAAGGGAAAAGTAGTCTG 58.461 41.667 0.00 0.00 0.00 3.51
8218 8607 5.803237 TCTCGAAAAGGGAAAAGTAGTCT 57.197 39.130 0.00 0.00 0.00 3.24
8219 8608 5.107026 GCTTCTCGAAAAGGGAAAAGTAGTC 60.107 44.000 0.00 0.00 39.18 2.59
8220 8609 4.755629 GCTTCTCGAAAAGGGAAAAGTAGT 59.244 41.667 0.00 0.00 39.18 2.73
8221 8610 4.755123 TGCTTCTCGAAAAGGGAAAAGTAG 59.245 41.667 0.00 0.00 39.18 2.57
8222 8611 4.514066 GTGCTTCTCGAAAAGGGAAAAGTA 59.486 41.667 0.00 0.00 39.18 2.24
8223 8612 3.315470 GTGCTTCTCGAAAAGGGAAAAGT 59.685 43.478 0.00 0.00 39.18 2.66
8224 8613 3.315191 TGTGCTTCTCGAAAAGGGAAAAG 59.685 43.478 0.00 0.00 39.18 2.27
8225 8614 3.283751 TGTGCTTCTCGAAAAGGGAAAA 58.716 40.909 0.00 0.00 39.18 2.29
8226 8615 2.925724 TGTGCTTCTCGAAAAGGGAAA 58.074 42.857 0.00 0.00 39.18 3.13
8227 8616 2.631160 TGTGCTTCTCGAAAAGGGAA 57.369 45.000 0.00 0.00 36.90 3.97
8228 8617 2.224523 ACATGTGCTTCTCGAAAAGGGA 60.225 45.455 0.00 0.00 0.00 4.20
8229 8618 2.154462 ACATGTGCTTCTCGAAAAGGG 58.846 47.619 0.00 0.00 0.00 3.95
8230 8619 3.003689 ACAACATGTGCTTCTCGAAAAGG 59.996 43.478 0.00 0.00 0.00 3.11
8231 8620 3.970610 CACAACATGTGCTTCTCGAAAAG 59.029 43.478 0.00 0.00 41.89 2.27
8232 8621 3.243035 CCACAACATGTGCTTCTCGAAAA 60.243 43.478 0.00 0.00 46.51 2.29
8233 8622 2.290367 CCACAACATGTGCTTCTCGAAA 59.710 45.455 0.00 0.00 46.51 3.46
8234 8623 1.872952 CCACAACATGTGCTTCTCGAA 59.127 47.619 0.00 0.00 46.51 3.71
8235 8624 1.202639 ACCACAACATGTGCTTCTCGA 60.203 47.619 0.00 0.00 46.51 4.04
8236 8625 1.229428 ACCACAACATGTGCTTCTCG 58.771 50.000 0.00 0.00 46.51 4.04
8237 8626 3.715628 AAACCACAACATGTGCTTCTC 57.284 42.857 0.00 0.00 46.51 2.87
8238 8627 4.432712 GAAAAACCACAACATGTGCTTCT 58.567 39.130 0.00 0.00 46.51 2.85
8239 8628 4.777140 GAAAAACCACAACATGTGCTTC 57.223 40.909 0.00 2.24 46.51 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.