Multiple sequence alignment - TraesCS1A01G192000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G192000 chr1A 100.000 2698 0 0 1 2698 347419136 347416439 0.000000e+00 4983
1 TraesCS1A01G192000 chr1A 98.864 88 1 0 2317 2404 4167539 4167452 1.000000e-34 158
2 TraesCS1A01G192000 chr1A 100.000 85 0 0 2317 2401 56665243 56665327 1.000000e-34 158
3 TraesCS1A01G192000 chr1A 98.864 88 1 0 2317 2404 65710748 65710661 1.000000e-34 158
4 TraesCS1A01G192000 chr2A 96.369 1873 64 4 448 2316 130065903 130064031 0.000000e+00 3079
5 TraesCS1A01G192000 chr2A 96.659 449 15 0 2 450 130066387 130065939 0.000000e+00 747
6 TraesCS1A01G192000 chr2A 100.000 88 0 0 2317 2404 475476158 475476071 2.150000e-36 163
7 TraesCS1A01G192000 chr3A 96.148 1869 55 6 448 2316 706202763 706204614 0.000000e+00 3037
8 TraesCS1A01G192000 chr3A 97.773 449 10 0 2 450 706202279 706202727 0.000000e+00 774
9 TraesCS1A01G192000 chr5A 94.617 1895 68 13 448 2316 168957792 168959678 0.000000e+00 2904
10 TraesCS1A01G192000 chr5A 96.889 450 14 0 1 450 168957307 168957756 0.000000e+00 754
11 TraesCS1A01G192000 chr6A 94.248 1895 63 9 448 2319 276499514 276501385 0.000000e+00 2854
12 TraesCS1A01G192000 chr6A 98.000 450 9 0 1 450 276499029 276499478 0.000000e+00 782
13 TraesCS1A01G192000 chr6A 95.425 306 9 5 2394 2698 301060610 301060911 1.450000e-132 483
14 TraesCS1A01G192000 chr6A 100.000 88 0 0 2317 2404 250910450 250910537 2.150000e-36 163
15 TraesCS1A01G192000 chr1D 97.022 1108 33 0 448 1555 487306927 487305820 0.000000e+00 1864
16 TraesCS1A01G192000 chr1D 96.390 1108 38 1 448 1555 30697859 30696754 0.000000e+00 1823
17 TraesCS1A01G192000 chr1D 95.916 759 31 0 1553 2311 487305787 487305029 0.000000e+00 1230
18 TraesCS1A01G192000 chr1D 95.681 764 31 1 1553 2316 30696721 30695960 0.000000e+00 1227
19 TraesCS1A01G192000 chr1D 97.315 447 12 0 4 450 487307409 487306963 0.000000e+00 760
20 TraesCS1A01G192000 chr1D 96.197 447 16 1 4 450 30698340 30697895 0.000000e+00 730
21 TraesCS1A01G192000 chr3D 96.480 1108 39 0 448 1555 465176138 465177245 0.000000e+00 1831
22 TraesCS1A01G192000 chr3D 96.300 1108 40 1 448 1555 516403217 516402111 0.000000e+00 1818
23 TraesCS1A01G192000 chr3D 96.078 765 30 0 1553 2317 516402078 516401314 0.000000e+00 1247
24 TraesCS1A01G192000 chr3D 95.550 764 33 1 1553 2316 465177278 465178040 0.000000e+00 1221
25 TraesCS1A01G192000 chr3D 97.556 450 11 0 1 450 516403702 516403253 0.000000e+00 771
26 TraesCS1A01G192000 chr3D 97.315 447 12 0 4 450 465175656 465176102 0.000000e+00 760
27 TraesCS1A01G192000 chr2B 95.405 1110 47 3 448 1555 431804 432911 0.000000e+00 1764
28 TraesCS1A01G192000 chr2B 96.896 451 13 1 1 450 431318 431768 0.000000e+00 754
29 TraesCS1A01G192000 chr7A 95.303 1107 51 1 448 1554 303751780 303750675 0.000000e+00 1755
30 TraesCS1A01G192000 chr7A 96.204 764 29 0 1553 2316 303750641 303749878 0.000000e+00 1251
31 TraesCS1A01G192000 chr7A 95.440 307 11 3 2392 2698 198605834 198606137 1.120000e-133 486
32 TraesCS1A01G192000 chr7A 95.724 304 10 3 2395 2698 261064827 261065127 1.120000e-133 486
33 TraesCS1A01G192000 chr7A 87.166 187 18 3 2323 2507 300748287 300748105 9.790000e-50 207
34 TraesCS1A01G192000 chr4A 92.120 368 23 6 2332 2698 233493195 233493557 5.150000e-142 514
35 TraesCS1A01G192000 chr4A 96.321 299 9 2 2400 2698 150791999 150792295 8.680000e-135 490
36 TraesCS1A01G192000 chr4A 96.321 299 9 2 2400 2698 225248567 225248271 8.680000e-135 490
37 TraesCS1A01G192000 chr4A 96.333 300 8 3 2400 2698 484490280 484490577 8.680000e-135 490
38 TraesCS1A01G192000 chr4A 96.013 301 9 3 2399 2698 548760990 548761288 1.120000e-133 486
39 TraesCS1A01G192000 chr2D 95.710 303 9 4 2396 2698 399377319 399377617 4.040000e-133 484
40 TraesCS1A01G192000 chrUn 100.000 85 0 0 2317 2401 354036479 354036563 1.000000e-34 158
41 TraesCS1A01G192000 chrUn 100.000 85 0 0 2317 2401 371298111 371298195 1.000000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G192000 chr1A 347416439 347419136 2697 True 4983.000000 4983 100.000000 1 2698 1 chr1A.!!$R3 2697
1 TraesCS1A01G192000 chr2A 130064031 130066387 2356 True 1913.000000 3079 96.514000 2 2316 2 chr2A.!!$R2 2314
2 TraesCS1A01G192000 chr3A 706202279 706204614 2335 False 1905.500000 3037 96.960500 2 2316 2 chr3A.!!$F1 2314
3 TraesCS1A01G192000 chr5A 168957307 168959678 2371 False 1829.000000 2904 95.753000 1 2316 2 chr5A.!!$F1 2315
4 TraesCS1A01G192000 chr6A 276499029 276501385 2356 False 1818.000000 2854 96.124000 1 2319 2 chr6A.!!$F3 2318
5 TraesCS1A01G192000 chr1D 487305029 487307409 2380 True 1284.666667 1864 96.751000 4 2311 3 chr1D.!!$R2 2307
6 TraesCS1A01G192000 chr1D 30695960 30698340 2380 True 1260.000000 1823 96.089333 4 2316 3 chr1D.!!$R1 2312
7 TraesCS1A01G192000 chr3D 516401314 516403702 2388 True 1278.666667 1818 96.644667 1 2317 3 chr3D.!!$R1 2316
8 TraesCS1A01G192000 chr3D 465175656 465178040 2384 False 1270.666667 1831 96.448333 4 2316 3 chr3D.!!$F1 2312
9 TraesCS1A01G192000 chr2B 431318 432911 1593 False 1259.000000 1764 96.150500 1 1555 2 chr2B.!!$F1 1554
10 TraesCS1A01G192000 chr7A 303749878 303751780 1902 True 1503.000000 1755 95.753500 448 2316 2 chr7A.!!$R2 1868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 423 1.25775 GGATTTGGCCCCCTGTTGTC 61.258 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2345 2432 0.105593 AGTGCTATGTCCATGGCTCG 59.894 55.0 6.96 0.0 44.38 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 3.363341 TGATTGAAACCAAACGCCTTC 57.637 42.857 0.00 0.00 0.00 3.46
117 118 2.669569 GCTTCGTGCTTGCCTGGA 60.670 61.111 0.00 0.00 38.95 3.86
421 423 1.257750 GGATTTGGCCCCCTGTTGTC 61.258 60.000 0.00 0.00 0.00 3.18
769 812 1.686355 TCGGTGGTTTTCAATGTGCT 58.314 45.000 0.00 0.00 0.00 4.40
798 841 8.920665 GCTCTACATTCATAGTACATCATTGAC 58.079 37.037 0.00 0.00 0.00 3.18
845 888 9.801873 ATTTCCGTTGAGGTGATTATTTATTTG 57.198 29.630 0.00 0.00 41.99 2.32
851 894 9.788960 GTTGAGGTGATTATTTATTTGTTCCTC 57.211 33.333 0.00 0.00 38.41 3.71
954 999 7.421599 CAAATTGTGTACCTATTGTTGTGTGA 58.578 34.615 0.00 0.00 0.00 3.58
966 1011 8.924691 CCTATTGTTGTGTGAAATTTAATGTGG 58.075 33.333 0.00 0.00 0.00 4.17
986 1031 2.325082 GCACCGCACTCATCCGTTT 61.325 57.895 0.00 0.00 0.00 3.60
1106 1151 4.021456 TGTCCGCGATCTCCATATGTTAAT 60.021 41.667 8.23 0.00 0.00 1.40
1110 1155 5.163953 CCGCGATCTCCATATGTTAATTGTC 60.164 44.000 8.23 0.00 0.00 3.18
1126 1171 3.306917 TTGTCTGCGAAGACGGAAATA 57.693 42.857 18.76 0.00 41.43 1.40
1257 1302 3.815401 ACTCTTGCTGTCATGGTTTGTAC 59.185 43.478 0.00 0.00 0.00 2.90
1325 1370 8.970859 AGCAGTGTCTATTATGCTTTTAATCT 57.029 30.769 0.00 0.00 46.46 2.40
1664 1750 6.300703 TGCAATGATGATGATGATGTTCCTA 58.699 36.000 0.00 0.00 0.00 2.94
1688 1774 2.427095 TCACGATGAAGACGATGATGGT 59.573 45.455 0.00 0.00 34.70 3.55
1695 1781 4.641396 TGAAGACGATGATGGTTGTTCTT 58.359 39.130 0.00 0.00 0.00 2.52
1746 1832 2.093500 CCTGTTGGATGATGTTCCTCGA 60.093 50.000 0.00 0.00 36.68 4.04
1786 1872 4.422073 TGTAGGGATGTTGATGGATGAC 57.578 45.455 0.00 0.00 0.00 3.06
1796 1882 9.125026 GGATGTTGATGGATGACTTTAGTTTAT 57.875 33.333 0.00 0.00 0.00 1.40
1983 2070 8.588290 TGTGGAGCATTAATTTAATTACTGGT 57.412 30.769 15.96 15.96 38.35 4.00
2101 2188 7.870509 TGAGATTTGAATTCCTGGACATTAG 57.129 36.000 2.27 0.00 0.00 1.73
2318 2405 1.489560 GGGGTCCTGTTGTAGTGCCT 61.490 60.000 0.00 0.00 0.00 4.75
2319 2406 1.272807 GGGTCCTGTTGTAGTGCCTA 58.727 55.000 0.00 0.00 0.00 3.93
2320 2407 1.838077 GGGTCCTGTTGTAGTGCCTAT 59.162 52.381 0.00 0.00 0.00 2.57
2321 2408 3.036091 GGGTCCTGTTGTAGTGCCTATA 58.964 50.000 0.00 0.00 0.00 1.31
2322 2409 3.453353 GGGTCCTGTTGTAGTGCCTATAA 59.547 47.826 0.00 0.00 0.00 0.98
2323 2410 4.080751 GGGTCCTGTTGTAGTGCCTATAAA 60.081 45.833 0.00 0.00 0.00 1.40
2324 2411 4.874396 GGTCCTGTTGTAGTGCCTATAAAC 59.126 45.833 0.00 0.00 0.00 2.01
2325 2412 5.338137 GGTCCTGTTGTAGTGCCTATAAACT 60.338 44.000 9.77 0.00 0.00 2.66
2326 2413 6.171213 GTCCTGTTGTAGTGCCTATAAACTT 58.829 40.000 9.77 0.00 0.00 2.66
2327 2414 6.653740 GTCCTGTTGTAGTGCCTATAAACTTT 59.346 38.462 9.77 0.00 0.00 2.66
2328 2415 6.877322 TCCTGTTGTAGTGCCTATAAACTTTC 59.123 38.462 9.77 0.00 0.00 2.62
2329 2416 6.653320 CCTGTTGTAGTGCCTATAAACTTTCA 59.347 38.462 9.77 0.00 0.00 2.69
2330 2417 7.360946 CCTGTTGTAGTGCCTATAAACTTTCAC 60.361 40.741 9.77 0.00 0.00 3.18
2331 2418 6.146510 TGTTGTAGTGCCTATAAACTTTCACG 59.853 38.462 9.77 0.00 0.00 4.35
2332 2419 4.628333 TGTAGTGCCTATAAACTTTCACGC 59.372 41.667 0.00 0.00 0.00 5.34
2333 2420 3.670625 AGTGCCTATAAACTTTCACGCA 58.329 40.909 0.00 0.00 0.00 5.24
2334 2421 4.069304 AGTGCCTATAAACTTTCACGCAA 58.931 39.130 0.00 0.00 0.00 4.85
2335 2422 4.700213 AGTGCCTATAAACTTTCACGCAAT 59.300 37.500 0.00 0.00 0.00 3.56
2336 2423 5.878116 AGTGCCTATAAACTTTCACGCAATA 59.122 36.000 0.00 0.00 0.00 1.90
2337 2424 6.542370 AGTGCCTATAAACTTTCACGCAATAT 59.458 34.615 0.00 0.00 0.00 1.28
2338 2425 7.713507 AGTGCCTATAAACTTTCACGCAATATA 59.286 33.333 0.00 0.00 0.00 0.86
2339 2426 8.504005 GTGCCTATAAACTTTCACGCAATATAT 58.496 33.333 0.00 0.00 0.00 0.86
2340 2427 8.503196 TGCCTATAAACTTTCACGCAATATATG 58.497 33.333 0.00 0.00 0.00 1.78
2341 2428 8.717821 GCCTATAAACTTTCACGCAATATATGA 58.282 33.333 0.00 0.00 0.00 2.15
2343 2430 9.746711 CTATAAACTTTCACGCAATATATGAGC 57.253 33.333 1.32 1.32 31.06 4.26
2360 2447 3.942500 CGCGAGCCATGGACATAG 58.057 61.111 18.40 1.67 0.00 2.23
2361 2448 2.313172 CGCGAGCCATGGACATAGC 61.313 63.158 18.40 11.23 0.00 2.97
2362 2449 1.227645 GCGAGCCATGGACATAGCA 60.228 57.895 18.40 0.00 0.00 3.49
2363 2450 1.502163 GCGAGCCATGGACATAGCAC 61.502 60.000 18.40 0.00 0.00 4.40
2364 2451 0.105593 CGAGCCATGGACATAGCACT 59.894 55.000 18.40 0.00 0.00 4.40
2365 2452 1.341209 CGAGCCATGGACATAGCACTA 59.659 52.381 18.40 0.00 0.00 2.74
2366 2453 2.028658 CGAGCCATGGACATAGCACTAT 60.029 50.000 18.40 0.00 0.00 2.12
2367 2454 3.332919 GAGCCATGGACATAGCACTATG 58.667 50.000 18.40 14.66 46.24 2.23
2368 2455 2.039480 AGCCATGGACATAGCACTATGG 59.961 50.000 18.40 0.00 45.36 2.74
2369 2456 2.877300 GCCATGGACATAGCACTATGGG 60.877 54.545 18.40 12.14 45.36 4.00
2370 2457 2.373169 CCATGGACATAGCACTATGGGT 59.627 50.000 19.16 2.20 45.36 4.51
2371 2458 3.405831 CATGGACATAGCACTATGGGTG 58.594 50.000 19.16 9.74 45.36 4.61
2372 2459 1.768275 TGGACATAGCACTATGGGTGG 59.232 52.381 19.16 0.00 45.36 4.61
2373 2460 2.047061 GGACATAGCACTATGGGTGGA 58.953 52.381 19.16 0.00 45.36 4.02
2374 2461 2.438021 GGACATAGCACTATGGGTGGAA 59.562 50.000 19.16 0.00 45.36 3.53
2375 2462 3.073062 GGACATAGCACTATGGGTGGAAT 59.927 47.826 19.16 0.00 45.36 3.01
2376 2463 4.286032 GGACATAGCACTATGGGTGGAATA 59.714 45.833 19.16 0.00 45.36 1.75
2377 2464 5.482908 GACATAGCACTATGGGTGGAATAG 58.517 45.833 19.16 0.00 45.36 1.73
2378 2465 5.155161 ACATAGCACTATGGGTGGAATAGA 58.845 41.667 19.16 0.00 45.36 1.98
2379 2466 5.606749 ACATAGCACTATGGGTGGAATAGAA 59.393 40.000 19.16 0.00 45.36 2.10
2380 2467 6.273260 ACATAGCACTATGGGTGGAATAGAAT 59.727 38.462 19.16 0.00 45.36 2.40
2381 2468 7.457852 ACATAGCACTATGGGTGGAATAGAATA 59.542 37.037 19.16 0.00 45.36 1.75
2382 2469 6.959606 AGCACTATGGGTGGAATAGAATAT 57.040 37.500 0.00 0.00 45.44 1.28
2383 2470 9.729550 ATAGCACTATGGGTGGAATAGAATATA 57.270 33.333 0.00 0.00 45.44 0.86
2384 2471 8.449423 AGCACTATGGGTGGAATAGAATATAA 57.551 34.615 0.00 0.00 45.44 0.98
2385 2472 9.062367 AGCACTATGGGTGGAATAGAATATAAT 57.938 33.333 0.00 0.00 45.44 1.28
2386 2473 9.113838 GCACTATGGGTGGAATAGAATATAATG 57.886 37.037 0.00 0.00 45.44 1.90
2390 2477 7.270832 TGGGTGGAATAGAATATAATGAGGG 57.729 40.000 0.00 0.00 0.00 4.30
2391 2478 6.217487 TGGGTGGAATAGAATATAATGAGGGG 59.783 42.308 0.00 0.00 0.00 4.79
2392 2479 6.353951 GGGTGGAATAGAATATAATGAGGGGG 60.354 46.154 0.00 0.00 0.00 5.40
2407 2494 3.374506 GGGGGTTATGTGTAGCGAC 57.625 57.895 0.00 0.00 0.00 5.19
2408 2495 0.179065 GGGGGTTATGTGTAGCGACC 60.179 60.000 0.00 0.00 0.00 4.79
2409 2496 3.374506 GGGTTATGTGTAGCGACCC 57.625 57.895 0.00 0.00 42.80 4.46
2410 2497 0.529119 GGGTTATGTGTAGCGACCCG 60.529 60.000 0.00 0.00 40.45 5.28
2411 2498 0.457035 GGTTATGTGTAGCGACCCGA 59.543 55.000 0.00 0.00 0.00 5.14
2412 2499 1.553308 GTTATGTGTAGCGACCCGAC 58.447 55.000 0.00 0.00 0.00 4.79
2413 2500 1.133790 GTTATGTGTAGCGACCCGACT 59.866 52.381 0.00 0.00 0.00 4.18
2414 2501 1.019673 TATGTGTAGCGACCCGACTC 58.980 55.000 0.00 0.00 0.00 3.36
2415 2502 1.989966 ATGTGTAGCGACCCGACTCG 61.990 60.000 0.00 0.00 36.70 4.18
2416 2503 2.046988 TGTAGCGACCCGACTCGA 60.047 61.111 0.00 0.00 35.58 4.04
2417 2504 1.672030 TGTAGCGACCCGACTCGAA 60.672 57.895 0.00 0.00 35.58 3.71
2418 2505 1.028330 TGTAGCGACCCGACTCGAAT 61.028 55.000 0.00 0.00 35.58 3.34
2419 2506 0.591741 GTAGCGACCCGACTCGAATG 60.592 60.000 0.00 0.00 35.58 2.67
2420 2507 1.721664 TAGCGACCCGACTCGAATGG 61.722 60.000 0.00 0.00 35.58 3.16
2421 2508 3.060020 GCGACCCGACTCGAATGGA 62.060 63.158 0.00 0.00 35.58 3.41
2422 2509 1.734137 CGACCCGACTCGAATGGAT 59.266 57.895 0.00 0.00 35.58 3.41
2423 2510 0.317938 CGACCCGACTCGAATGGATC 60.318 60.000 0.00 0.00 35.58 3.36
2424 2511 0.744874 GACCCGACTCGAATGGATCA 59.255 55.000 0.00 0.00 0.00 2.92
2425 2512 1.136305 GACCCGACTCGAATGGATCAA 59.864 52.381 0.00 0.00 0.00 2.57
2426 2513 1.137086 ACCCGACTCGAATGGATCAAG 59.863 52.381 0.00 0.00 0.00 3.02
2427 2514 1.137086 CCCGACTCGAATGGATCAAGT 59.863 52.381 0.00 0.00 0.00 3.16
2428 2515 2.464865 CCGACTCGAATGGATCAAGTC 58.535 52.381 0.00 0.00 0.00 3.01
2429 2516 2.099921 CCGACTCGAATGGATCAAGTCT 59.900 50.000 0.00 0.00 0.00 3.24
2430 2517 3.367607 CGACTCGAATGGATCAAGTCTC 58.632 50.000 0.00 0.00 0.00 3.36
2431 2518 3.066064 CGACTCGAATGGATCAAGTCTCT 59.934 47.826 0.00 0.00 0.00 3.10
2432 2519 4.358851 GACTCGAATGGATCAAGTCTCTG 58.641 47.826 0.00 0.00 0.00 3.35
2433 2520 3.766591 ACTCGAATGGATCAAGTCTCTGT 59.233 43.478 0.00 0.00 0.00 3.41
2434 2521 4.111198 CTCGAATGGATCAAGTCTCTGTG 58.889 47.826 0.00 0.00 0.00 3.66
2435 2522 2.606725 CGAATGGATCAAGTCTCTGTGC 59.393 50.000 0.00 0.00 0.00 4.57
2436 2523 3.678252 CGAATGGATCAAGTCTCTGTGCT 60.678 47.826 0.00 0.00 0.00 4.40
2437 2524 3.996921 ATGGATCAAGTCTCTGTGCTT 57.003 42.857 0.00 0.00 0.00 3.91
2438 2525 5.423015 GAATGGATCAAGTCTCTGTGCTTA 58.577 41.667 0.00 0.00 0.00 3.09
2439 2526 4.890158 TGGATCAAGTCTCTGTGCTTAA 57.110 40.909 0.00 0.00 0.00 1.85
2440 2527 4.825422 TGGATCAAGTCTCTGTGCTTAAG 58.175 43.478 0.00 0.00 0.00 1.85
2441 2528 4.284490 TGGATCAAGTCTCTGTGCTTAAGT 59.716 41.667 4.02 0.00 0.00 2.24
2442 2529 4.629200 GGATCAAGTCTCTGTGCTTAAGTG 59.371 45.833 4.02 0.00 0.00 3.16
2443 2530 4.672587 TCAAGTCTCTGTGCTTAAGTGT 57.327 40.909 4.02 0.00 0.00 3.55
2444 2531 4.621991 TCAAGTCTCTGTGCTTAAGTGTC 58.378 43.478 4.02 0.00 0.00 3.67
2445 2532 4.099419 TCAAGTCTCTGTGCTTAAGTGTCA 59.901 41.667 4.02 0.89 0.00 3.58
2446 2533 4.881019 AGTCTCTGTGCTTAAGTGTCAT 57.119 40.909 4.02 0.00 0.00 3.06
2447 2534 4.815269 AGTCTCTGTGCTTAAGTGTCATC 58.185 43.478 4.02 0.00 0.00 2.92
2448 2535 3.929610 GTCTCTGTGCTTAAGTGTCATCC 59.070 47.826 4.02 0.00 0.00 3.51
2449 2536 3.055819 TCTCTGTGCTTAAGTGTCATCCC 60.056 47.826 4.02 0.00 0.00 3.85
2450 2537 2.906389 TCTGTGCTTAAGTGTCATCCCT 59.094 45.455 4.02 0.00 0.00 4.20
2451 2538 3.005554 CTGTGCTTAAGTGTCATCCCTG 58.994 50.000 4.02 0.00 0.00 4.45
2452 2539 2.290260 TGTGCTTAAGTGTCATCCCTGG 60.290 50.000 4.02 0.00 0.00 4.45
2453 2540 2.027192 GTGCTTAAGTGTCATCCCTGGA 60.027 50.000 4.02 0.00 0.00 3.86
2454 2541 2.846206 TGCTTAAGTGTCATCCCTGGAT 59.154 45.455 4.02 0.00 34.81 3.41
2455 2542 3.266772 TGCTTAAGTGTCATCCCTGGATT 59.733 43.478 4.02 0.00 31.62 3.01
2456 2543 3.629398 GCTTAAGTGTCATCCCTGGATTG 59.371 47.826 4.02 0.00 31.62 2.67
2457 2544 2.814805 AAGTGTCATCCCTGGATTGG 57.185 50.000 0.00 0.00 31.62 3.16
2458 2545 1.673767 AGTGTCATCCCTGGATTGGT 58.326 50.000 0.00 0.00 31.62 3.67
2459 2546 2.845659 AGTGTCATCCCTGGATTGGTA 58.154 47.619 0.00 0.00 31.62 3.25
2460 2547 3.397527 AGTGTCATCCCTGGATTGGTAT 58.602 45.455 0.00 0.00 31.62 2.73
2461 2548 3.137176 AGTGTCATCCCTGGATTGGTATG 59.863 47.826 0.00 0.00 31.62 2.39
2462 2549 2.158623 TGTCATCCCTGGATTGGTATGC 60.159 50.000 0.00 0.00 31.62 3.14
2463 2550 2.107204 GTCATCCCTGGATTGGTATGCT 59.893 50.000 0.00 0.00 31.62 3.79
2464 2551 2.107031 TCATCCCTGGATTGGTATGCTG 59.893 50.000 0.00 0.00 31.62 4.41
2465 2552 1.891933 TCCCTGGATTGGTATGCTGA 58.108 50.000 0.00 0.00 0.00 4.26
2466 2553 1.490490 TCCCTGGATTGGTATGCTGAC 59.510 52.381 0.00 0.00 0.00 3.51
2467 2554 1.212688 CCCTGGATTGGTATGCTGACA 59.787 52.381 0.00 0.00 0.00 3.58
2468 2555 2.292267 CCTGGATTGGTATGCTGACAC 58.708 52.381 0.00 0.00 0.00 3.67
2469 2556 2.356022 CCTGGATTGGTATGCTGACACA 60.356 50.000 0.00 0.00 0.00 3.72
2470 2557 2.679837 CTGGATTGGTATGCTGACACAC 59.320 50.000 0.00 0.00 0.00 3.82
2471 2558 2.039613 TGGATTGGTATGCTGACACACA 59.960 45.455 0.00 0.00 0.00 3.72
2472 2559 2.420022 GGATTGGTATGCTGACACACAC 59.580 50.000 0.00 0.00 0.00 3.82
2473 2560 2.629336 TTGGTATGCTGACACACACA 57.371 45.000 0.00 0.00 0.00 3.72
2474 2561 2.168326 TGGTATGCTGACACACACAG 57.832 50.000 0.00 0.00 38.27 3.66
2475 2562 1.416030 TGGTATGCTGACACACACAGT 59.584 47.619 0.00 0.00 37.64 3.55
2476 2563 2.630580 TGGTATGCTGACACACACAGTA 59.369 45.455 0.00 0.00 37.64 2.74
2477 2564 2.993899 GGTATGCTGACACACACAGTAC 59.006 50.000 0.00 0.00 37.64 2.73
2478 2565 3.306088 GGTATGCTGACACACACAGTACT 60.306 47.826 0.00 0.00 37.64 2.73
2479 2566 2.509052 TGCTGACACACACAGTACTC 57.491 50.000 0.00 0.00 37.64 2.59
2480 2567 1.269051 TGCTGACACACACAGTACTCG 60.269 52.381 0.00 0.00 37.64 4.18
2481 2568 1.001706 GCTGACACACACAGTACTCGA 60.002 52.381 0.00 0.00 37.64 4.04
2482 2569 2.918549 GCTGACACACACAGTACTCGAG 60.919 54.545 11.84 11.84 37.64 4.04
2483 2570 1.607148 TGACACACACAGTACTCGAGG 59.393 52.381 18.41 0.59 0.00 4.63
2484 2571 1.878088 GACACACACAGTACTCGAGGA 59.122 52.381 18.41 4.89 0.00 3.71
2485 2572 2.488545 GACACACACAGTACTCGAGGAT 59.511 50.000 18.41 0.00 0.00 3.24
2486 2573 2.891580 ACACACACAGTACTCGAGGATT 59.108 45.455 18.41 0.87 0.00 3.01
2487 2574 3.321111 ACACACACAGTACTCGAGGATTT 59.679 43.478 18.41 0.00 0.00 2.17
2488 2575 4.521639 ACACACACAGTACTCGAGGATTTA 59.478 41.667 18.41 0.00 0.00 1.40
2489 2576 5.185249 ACACACACAGTACTCGAGGATTTAT 59.815 40.000 18.41 0.00 0.00 1.40
2490 2577 6.376299 ACACACACAGTACTCGAGGATTTATA 59.624 38.462 18.41 0.00 0.00 0.98
2491 2578 7.094075 ACACACACAGTACTCGAGGATTTATAA 60.094 37.037 18.41 0.00 0.00 0.98
2492 2579 7.220300 CACACACAGTACTCGAGGATTTATAAC 59.780 40.741 18.41 0.00 0.00 1.89
2493 2580 7.094075 ACACACAGTACTCGAGGATTTATAACA 60.094 37.037 18.41 0.00 0.00 2.41
2494 2581 7.432545 CACACAGTACTCGAGGATTTATAACAG 59.567 40.741 18.41 0.00 0.00 3.16
2495 2582 7.338703 ACACAGTACTCGAGGATTTATAACAGA 59.661 37.037 18.41 0.00 0.00 3.41
2496 2583 7.858382 CACAGTACTCGAGGATTTATAACAGAG 59.142 40.741 18.41 0.00 0.00 3.35
2497 2584 7.013464 ACAGTACTCGAGGATTTATAACAGAGG 59.987 40.741 18.41 0.00 0.00 3.69
2498 2585 7.013464 CAGTACTCGAGGATTTATAACAGAGGT 59.987 40.741 18.41 0.00 0.00 3.85
2499 2586 8.216423 AGTACTCGAGGATTTATAACAGAGGTA 58.784 37.037 18.41 0.00 0.00 3.08
2500 2587 7.893124 ACTCGAGGATTTATAACAGAGGTAA 57.107 36.000 18.41 0.00 0.00 2.85
2501 2588 8.302515 ACTCGAGGATTTATAACAGAGGTAAA 57.697 34.615 18.41 0.00 0.00 2.01
2502 2589 8.925338 ACTCGAGGATTTATAACAGAGGTAAAT 58.075 33.333 18.41 0.00 32.39 1.40
2503 2590 9.413048 CTCGAGGATTTATAACAGAGGTAAATC 57.587 37.037 3.91 8.01 41.06 2.17
2504 2591 8.920174 TCGAGGATTTATAACAGAGGTAAATCA 58.080 33.333 15.05 0.00 42.43 2.57
2505 2592 8.979574 CGAGGATTTATAACAGAGGTAAATCAC 58.020 37.037 15.05 9.55 42.43 3.06
2506 2593 9.832445 GAGGATTTATAACAGAGGTAAATCACA 57.168 33.333 15.05 0.00 42.43 3.58
2516 2603 9.959721 AACAGAGGTAAATCACATGTATAAAGT 57.040 29.630 0.00 0.00 0.00 2.66
2521 2608 9.880157 AGGTAAATCACATGTATAAAGTAACGT 57.120 29.630 0.00 0.00 0.00 3.99
2552 2639 8.682936 ACTATTACCTCAATCCAAAATAGCAG 57.317 34.615 0.00 0.00 32.62 4.24
2553 2640 8.494433 ACTATTACCTCAATCCAAAATAGCAGA 58.506 33.333 0.00 0.00 32.62 4.26
2554 2641 9.342308 CTATTACCTCAATCCAAAATAGCAGAA 57.658 33.333 0.00 0.00 0.00 3.02
2555 2642 7.630242 TTACCTCAATCCAAAATAGCAGAAG 57.370 36.000 0.00 0.00 0.00 2.85
2556 2643 5.574188 ACCTCAATCCAAAATAGCAGAAGT 58.426 37.500 0.00 0.00 0.00 3.01
2557 2644 6.721318 ACCTCAATCCAAAATAGCAGAAGTA 58.279 36.000 0.00 0.00 0.00 2.24
2558 2645 7.175104 ACCTCAATCCAAAATAGCAGAAGTAA 58.825 34.615 0.00 0.00 0.00 2.24
2559 2646 7.121315 ACCTCAATCCAAAATAGCAGAAGTAAC 59.879 37.037 0.00 0.00 0.00 2.50
2560 2647 7.121168 CCTCAATCCAAAATAGCAGAAGTAACA 59.879 37.037 0.00 0.00 0.00 2.41
2561 2648 8.402798 TCAATCCAAAATAGCAGAAGTAACAA 57.597 30.769 0.00 0.00 0.00 2.83
2562 2649 8.514594 TCAATCCAAAATAGCAGAAGTAACAAG 58.485 33.333 0.00 0.00 0.00 3.16
2563 2650 6.817765 TCCAAAATAGCAGAAGTAACAAGG 57.182 37.500 0.00 0.00 0.00 3.61
2564 2651 6.303839 TCCAAAATAGCAGAAGTAACAAGGT 58.696 36.000 0.00 0.00 0.00 3.50
2565 2652 6.775629 TCCAAAATAGCAGAAGTAACAAGGTT 59.224 34.615 0.00 0.00 0.00 3.50
2566 2653 7.940137 TCCAAAATAGCAGAAGTAACAAGGTTA 59.060 33.333 0.00 0.00 0.00 2.85
2567 2654 8.739972 CCAAAATAGCAGAAGTAACAAGGTTAT 58.260 33.333 0.00 0.00 0.00 1.89
2568 2655 9.559958 CAAAATAGCAGAAGTAACAAGGTTATG 57.440 33.333 0.00 0.00 0.00 1.90
2569 2656 7.865706 AATAGCAGAAGTAACAAGGTTATGG 57.134 36.000 0.00 0.00 0.00 2.74
2570 2657 5.499004 AGCAGAAGTAACAAGGTTATGGA 57.501 39.130 0.00 0.00 0.00 3.41
2571 2658 6.067217 AGCAGAAGTAACAAGGTTATGGAT 57.933 37.500 0.00 0.00 0.00 3.41
2572 2659 6.485171 AGCAGAAGTAACAAGGTTATGGATT 58.515 36.000 0.00 0.00 0.00 3.01
2573 2660 6.599638 AGCAGAAGTAACAAGGTTATGGATTC 59.400 38.462 0.00 0.00 0.00 2.52
2574 2661 6.183360 GCAGAAGTAACAAGGTTATGGATTCC 60.183 42.308 0.00 0.00 0.00 3.01
2575 2662 7.112779 CAGAAGTAACAAGGTTATGGATTCCT 58.887 38.462 3.95 0.00 0.00 3.36
2576 2663 8.265055 CAGAAGTAACAAGGTTATGGATTCCTA 58.735 37.037 3.95 0.00 0.00 2.94
2577 2664 9.004231 AGAAGTAACAAGGTTATGGATTCCTAT 57.996 33.333 3.95 0.00 0.00 2.57
2578 2665 9.274206 GAAGTAACAAGGTTATGGATTCCTATC 57.726 37.037 3.95 0.00 0.00 2.08
2579 2666 8.331931 AGTAACAAGGTTATGGATTCCTATCA 57.668 34.615 3.95 0.00 32.09 2.15
2580 2667 8.778059 AGTAACAAGGTTATGGATTCCTATCAA 58.222 33.333 3.95 0.00 32.09 2.57
2581 2668 7.881775 AACAAGGTTATGGATTCCTATCAAC 57.118 36.000 3.95 3.10 32.09 3.18
2582 2669 6.969043 ACAAGGTTATGGATTCCTATCAACA 58.031 36.000 3.95 0.00 32.09 3.33
2583 2670 6.828785 ACAAGGTTATGGATTCCTATCAACAC 59.171 38.462 3.95 0.00 32.09 3.32
2584 2671 5.941788 AGGTTATGGATTCCTATCAACACC 58.058 41.667 3.95 1.27 32.09 4.16
2585 2672 5.431731 AGGTTATGGATTCCTATCAACACCA 59.568 40.000 3.95 0.00 32.09 4.17
2586 2673 6.069088 AGGTTATGGATTCCTATCAACACCAA 60.069 38.462 3.95 0.00 32.09 3.67
2587 2674 6.777580 GGTTATGGATTCCTATCAACACCAAT 59.222 38.462 3.95 0.00 32.09 3.16
2588 2675 7.255590 GGTTATGGATTCCTATCAACACCAATG 60.256 40.741 3.95 0.00 32.09 2.82
2589 2676 4.535781 TGGATTCCTATCAACACCAATGG 58.464 43.478 3.95 0.00 32.09 3.16
2590 2677 3.319122 GGATTCCTATCAACACCAATGGC 59.681 47.826 0.00 0.00 32.09 4.40
2591 2678 3.448093 TTCCTATCAACACCAATGGCA 57.552 42.857 0.00 0.00 0.00 4.92
2592 2679 3.448093 TCCTATCAACACCAATGGCAA 57.552 42.857 0.00 0.00 0.00 4.52
2593 2680 3.772387 TCCTATCAACACCAATGGCAAA 58.228 40.909 0.00 0.00 0.00 3.68
2594 2681 3.763360 TCCTATCAACACCAATGGCAAAG 59.237 43.478 0.00 0.00 0.00 2.77
2595 2682 3.511146 CCTATCAACACCAATGGCAAAGT 59.489 43.478 0.00 0.00 0.00 2.66
2596 2683 4.021192 CCTATCAACACCAATGGCAAAGTT 60.021 41.667 0.00 0.00 0.00 2.66
2597 2684 3.176552 TCAACACCAATGGCAAAGTTG 57.823 42.857 16.26 16.26 38.08 3.16
2598 2685 2.762887 TCAACACCAATGGCAAAGTTGA 59.237 40.909 19.18 19.18 41.88 3.18
2599 2686 3.125316 CAACACCAATGGCAAAGTTGAG 58.875 45.455 16.99 3.73 38.80 3.02
2600 2687 2.387757 ACACCAATGGCAAAGTTGAGT 58.612 42.857 0.00 0.00 0.00 3.41
2601 2688 2.101249 ACACCAATGGCAAAGTTGAGTG 59.899 45.455 0.00 14.13 35.03 3.51
2602 2689 2.101249 CACCAATGGCAAAGTTGAGTGT 59.899 45.455 0.00 0.00 0.00 3.55
2603 2690 3.317711 CACCAATGGCAAAGTTGAGTGTA 59.682 43.478 0.00 0.00 0.00 2.90
2604 2691 3.569701 ACCAATGGCAAAGTTGAGTGTAG 59.430 43.478 0.00 0.00 0.00 2.74
2605 2692 3.820467 CCAATGGCAAAGTTGAGTGTAGA 59.180 43.478 0.00 0.00 0.00 2.59
2606 2693 4.278170 CCAATGGCAAAGTTGAGTGTAGAA 59.722 41.667 0.00 0.00 0.00 2.10
2607 2694 5.221224 CCAATGGCAAAGTTGAGTGTAGAAA 60.221 40.000 0.00 0.00 0.00 2.52
2608 2695 6.449698 CAATGGCAAAGTTGAGTGTAGAAAT 58.550 36.000 0.00 0.00 0.00 2.17
2609 2696 5.689383 TGGCAAAGTTGAGTGTAGAAATC 57.311 39.130 0.00 0.00 0.00 2.17
2610 2697 4.213270 TGGCAAAGTTGAGTGTAGAAATCG 59.787 41.667 0.00 0.00 0.00 3.34
2611 2698 4.213482 GGCAAAGTTGAGTGTAGAAATCGT 59.787 41.667 0.00 0.00 0.00 3.73
2612 2699 5.407387 GGCAAAGTTGAGTGTAGAAATCGTA 59.593 40.000 0.00 0.00 0.00 3.43
2613 2700 6.073440 GGCAAAGTTGAGTGTAGAAATCGTAA 60.073 38.462 0.00 0.00 0.00 3.18
2614 2701 6.790825 GCAAAGTTGAGTGTAGAAATCGTAAC 59.209 38.462 0.00 0.00 0.00 2.50
2615 2702 7.288672 CAAAGTTGAGTGTAGAAATCGTAACC 58.711 38.462 0.00 0.00 0.00 2.85
2616 2703 5.476614 AGTTGAGTGTAGAAATCGTAACCC 58.523 41.667 0.00 0.00 0.00 4.11
2617 2704 5.245526 AGTTGAGTGTAGAAATCGTAACCCT 59.754 40.000 0.00 0.00 0.00 4.34
2618 2705 6.435277 AGTTGAGTGTAGAAATCGTAACCCTA 59.565 38.462 0.00 0.00 0.00 3.53
2619 2706 6.839124 TGAGTGTAGAAATCGTAACCCTAA 57.161 37.500 0.00 0.00 0.00 2.69
2620 2707 6.624423 TGAGTGTAGAAATCGTAACCCTAAC 58.376 40.000 0.00 0.00 0.00 2.34
2621 2708 6.209192 TGAGTGTAGAAATCGTAACCCTAACA 59.791 38.462 0.00 0.00 0.00 2.41
2622 2709 7.093640 TGAGTGTAGAAATCGTAACCCTAACAT 60.094 37.037 0.00 0.00 0.00 2.71
2623 2710 8.297470 AGTGTAGAAATCGTAACCCTAACATA 57.703 34.615 0.00 0.00 0.00 2.29
2624 2711 8.921205 AGTGTAGAAATCGTAACCCTAACATAT 58.079 33.333 0.00 0.00 0.00 1.78
2625 2712 9.189723 GTGTAGAAATCGTAACCCTAACATATC 57.810 37.037 0.00 0.00 0.00 1.63
2626 2713 8.916062 TGTAGAAATCGTAACCCTAACATATCA 58.084 33.333 0.00 0.00 0.00 2.15
2627 2714 9.189723 GTAGAAATCGTAACCCTAACATATCAC 57.810 37.037 0.00 0.00 0.00 3.06
2628 2715 8.019656 AGAAATCGTAACCCTAACATATCACT 57.980 34.615 0.00 0.00 0.00 3.41
2629 2716 8.483758 AGAAATCGTAACCCTAACATATCACTT 58.516 33.333 0.00 0.00 0.00 3.16
2630 2717 9.754382 GAAATCGTAACCCTAACATATCACTTA 57.246 33.333 0.00 0.00 0.00 2.24
2631 2718 9.538508 AAATCGTAACCCTAACATATCACTTAC 57.461 33.333 0.00 0.00 0.00 2.34
2632 2719 7.643569 TCGTAACCCTAACATATCACTTACA 57.356 36.000 0.00 0.00 0.00 2.41
2633 2720 8.241497 TCGTAACCCTAACATATCACTTACAT 57.759 34.615 0.00 0.00 0.00 2.29
2634 2721 8.355169 TCGTAACCCTAACATATCACTTACATC 58.645 37.037 0.00 0.00 0.00 3.06
2635 2722 7.325338 CGTAACCCTAACATATCACTTACATCG 59.675 40.741 0.00 0.00 0.00 3.84
2636 2723 6.726490 ACCCTAACATATCACTTACATCGT 57.274 37.500 0.00 0.00 0.00 3.73
2637 2724 6.746120 ACCCTAACATATCACTTACATCGTC 58.254 40.000 0.00 0.00 0.00 4.20
2638 2725 5.856986 CCCTAACATATCACTTACATCGTCG 59.143 44.000 0.00 0.00 0.00 5.12
2639 2726 6.436261 CCTAACATATCACTTACATCGTCGT 58.564 40.000 0.00 0.00 0.00 4.34
2640 2727 7.308169 CCCTAACATATCACTTACATCGTCGTA 60.308 40.741 0.00 0.00 0.00 3.43
2641 2728 8.071967 CCTAACATATCACTTACATCGTCGTAA 58.928 37.037 0.00 0.76 0.00 3.18
2661 2748 7.223058 CGTAAGAAATCCTACAACATGAGAC 57.777 40.000 0.00 0.00 43.02 3.36
2662 2749 6.020599 CGTAAGAAATCCTACAACATGAGACG 60.021 42.308 0.00 0.00 43.02 4.18
2663 2750 5.407407 AGAAATCCTACAACATGAGACGT 57.593 39.130 0.00 0.00 0.00 4.34
2664 2751 5.794894 AGAAATCCTACAACATGAGACGTT 58.205 37.500 0.00 0.00 0.00 3.99
2666 2753 2.683968 TCCTACAACATGAGACGTTGC 58.316 47.619 0.00 0.00 46.14 4.17
2667 2754 2.036604 TCCTACAACATGAGACGTTGCA 59.963 45.455 0.00 0.00 46.14 4.08
2668 2755 2.413112 CCTACAACATGAGACGTTGCAG 59.587 50.000 0.00 0.21 46.14 4.41
2669 2756 0.588252 ACAACATGAGACGTTGCAGC 59.412 50.000 0.00 0.00 46.14 5.25
2670 2757 0.110056 CAACATGAGACGTTGCAGCC 60.110 55.000 0.00 0.00 37.53 4.85
2671 2758 0.534877 AACATGAGACGTTGCAGCCA 60.535 50.000 0.00 0.00 0.00 4.75
2672 2759 1.230635 ACATGAGACGTTGCAGCCAC 61.231 55.000 0.00 0.00 0.00 5.01
2673 2760 1.071299 ATGAGACGTTGCAGCCACA 59.929 52.632 0.00 0.00 0.00 4.17
2674 2761 0.534877 ATGAGACGTTGCAGCCACAA 60.535 50.000 0.00 0.00 0.00 3.33
2675 2762 0.746204 TGAGACGTTGCAGCCACAAA 60.746 50.000 0.00 0.00 0.00 2.83
2676 2763 0.040958 GAGACGTTGCAGCCACAAAG 60.041 55.000 0.00 1.56 35.49 2.77
2677 2764 1.008538 GACGTTGCAGCCACAAAGG 60.009 57.895 0.00 0.00 41.84 3.11
2678 2765 2.336088 CGTTGCAGCCACAAAGGG 59.664 61.111 0.00 0.00 38.09 3.95
2689 2776 4.900635 GCCACAAAGGGTCAGTATATTG 57.099 45.455 0.00 0.00 38.09 1.90
2690 2777 4.523083 GCCACAAAGGGTCAGTATATTGA 58.477 43.478 0.00 0.00 38.09 2.57
2691 2778 4.947388 GCCACAAAGGGTCAGTATATTGAA 59.053 41.667 0.00 0.00 38.09 2.69
2692 2779 5.594317 GCCACAAAGGGTCAGTATATTGAAT 59.406 40.000 0.00 0.00 38.09 2.57
2693 2780 6.460123 GCCACAAAGGGTCAGTATATTGAATG 60.460 42.308 0.00 0.00 38.09 2.67
2694 2781 6.603201 CCACAAAGGGTCAGTATATTGAATGT 59.397 38.462 0.00 0.00 0.00 2.71
2695 2782 7.773224 CCACAAAGGGTCAGTATATTGAATGTA 59.227 37.037 0.00 0.00 0.00 2.29
2696 2783 8.612619 CACAAAGGGTCAGTATATTGAATGTAC 58.387 37.037 4.16 4.16 0.00 2.90
2697 2784 8.548877 ACAAAGGGTCAGTATATTGAATGTACT 58.451 33.333 8.54 8.54 37.64 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.896801 GCACCAACCAGCAGTGTCG 61.897 63.158 0.00 0.00 33.96 4.35
769 812 8.885693 ATGATGTACTATGAATGTAGAGCCTA 57.114 34.615 0.00 0.00 0.00 3.93
845 888 7.666623 AGAGCTAATCTAAGCAATAGAGGAAC 58.333 38.462 5.62 0.00 43.75 3.62
883 928 7.227156 AGTTGAATAAGAGCAGAAAAGAAGGA 58.773 34.615 0.00 0.00 0.00 3.36
954 999 1.066502 GCGGTGCCCCACATTAAATTT 60.067 47.619 0.00 0.00 35.86 1.82
1009 1054 4.451150 TCCAGCCGTCCGTGATGC 62.451 66.667 0.00 0.00 0.00 3.91
1110 1155 2.993899 ACTTGTATTTCCGTCTTCGCAG 59.006 45.455 0.00 0.00 35.54 5.18
1257 1302 5.688621 CGACATAATGGGAAATTCAGCAATG 59.311 40.000 0.00 0.00 0.00 2.82
1496 1541 1.403814 TTCGAAACATTGGTTGCCCA 58.596 45.000 0.00 0.00 37.30 5.36
1609 1689 2.564771 CACGCACCCATGTAATCATCT 58.435 47.619 0.00 0.00 31.15 2.90
1664 1750 3.850122 TCATCGTCTTCATCGTGAACT 57.150 42.857 0.00 0.00 32.21 3.01
1695 1781 8.599792 AGCATCCCTACAACTAAACTAAAACTA 58.400 33.333 0.00 0.00 0.00 2.24
1786 1872 9.173939 CTCTTGACAGCAAAACATAAACTAAAG 57.826 33.333 0.00 0.00 32.73 1.85
1796 1882 7.308770 CCTGAATATTCTCTTGACAGCAAAACA 60.309 37.037 16.24 0.00 32.73 2.83
1928 2015 9.292195 TGGTGATAAGTATGTATATCAAGTCGA 57.708 33.333 0.00 0.00 39.52 4.20
2008 2095 8.137437 GCAATGCTTCAGGTGTTTTACATATAT 58.863 33.333 0.00 0.00 0.00 0.86
2101 2188 2.901249 ACACTCATATACGTTGGTGGC 58.099 47.619 0.00 0.00 0.00 5.01
2318 2405 8.432359 CGCTCATATATTGCGTGAAAGTTTATA 58.568 33.333 17.05 0.00 44.00 0.98
2319 2406 7.290842 CGCTCATATATTGCGTGAAAGTTTAT 58.709 34.615 17.05 0.00 44.00 1.40
2320 2407 6.645705 CGCTCATATATTGCGTGAAAGTTTA 58.354 36.000 17.05 0.00 44.00 2.01
2321 2408 5.501715 CGCTCATATATTGCGTGAAAGTTT 58.498 37.500 17.05 0.00 44.00 2.66
2322 2409 5.083136 CGCTCATATATTGCGTGAAAGTT 57.917 39.130 17.05 0.00 44.00 2.66
2323 2410 4.715520 CGCTCATATATTGCGTGAAAGT 57.284 40.909 17.05 0.00 44.00 2.66
2331 2418 0.371645 GGCTCGCGCTCATATATTGC 59.628 55.000 5.56 0.00 36.09 3.56
2332 2419 1.713597 TGGCTCGCGCTCATATATTG 58.286 50.000 5.56 0.00 36.09 1.90
2333 2420 2.274437 CATGGCTCGCGCTCATATATT 58.726 47.619 5.56 0.00 36.09 1.28
2334 2421 1.472201 CCATGGCTCGCGCTCATATAT 60.472 52.381 5.56 0.00 36.09 0.86
2335 2422 0.108662 CCATGGCTCGCGCTCATATA 60.109 55.000 5.56 0.00 36.09 0.86
2336 2423 1.375140 CCATGGCTCGCGCTCATAT 60.375 57.895 5.56 0.00 36.09 1.78
2337 2424 2.029518 CCATGGCTCGCGCTCATA 59.970 61.111 5.56 0.00 36.09 2.15
2338 2425 3.853487 TCCATGGCTCGCGCTCAT 61.853 61.111 6.96 1.65 36.09 2.90
2339 2426 4.819761 GTCCATGGCTCGCGCTCA 62.820 66.667 6.96 0.00 36.09 4.26
2340 2427 2.699576 TATGTCCATGGCTCGCGCTC 62.700 60.000 6.96 0.00 36.09 5.03
2341 2428 2.705934 CTATGTCCATGGCTCGCGCT 62.706 60.000 6.96 0.00 36.09 5.92
2342 2429 2.280119 TATGTCCATGGCTCGCGC 60.280 61.111 6.96 0.00 0.00 6.86
2343 2430 2.313172 GCTATGTCCATGGCTCGCG 61.313 63.158 6.96 0.00 41.38 5.87
2344 2431 1.227645 TGCTATGTCCATGGCTCGC 60.228 57.895 6.96 5.66 44.38 5.03
2345 2432 0.105593 AGTGCTATGTCCATGGCTCG 59.894 55.000 6.96 0.00 44.38 5.03
2346 2433 3.332919 CATAGTGCTATGTCCATGGCTC 58.667 50.000 6.96 12.06 44.38 4.70
2347 2434 2.039480 CCATAGTGCTATGTCCATGGCT 59.961 50.000 6.96 0.00 44.38 4.75
2348 2435 2.430465 CCATAGTGCTATGTCCATGGC 58.570 52.381 6.96 8.50 44.34 4.40
2349 2436 2.373169 ACCCATAGTGCTATGTCCATGG 59.627 50.000 4.97 4.97 40.90 3.66
2350 2437 3.405831 CACCCATAGTGCTATGTCCATG 58.594 50.000 15.52 6.64 40.90 3.66
2351 2438 2.373169 CCACCCATAGTGCTATGTCCAT 59.627 50.000 15.52 0.00 45.83 3.41
2352 2439 1.768275 CCACCCATAGTGCTATGTCCA 59.232 52.381 15.52 0.00 45.83 4.02
2353 2440 2.047061 TCCACCCATAGTGCTATGTCC 58.953 52.381 15.52 0.00 45.83 4.02
2354 2441 3.838244 TTCCACCCATAGTGCTATGTC 57.162 47.619 15.52 0.00 45.83 3.06
2355 2442 5.155161 TCTATTCCACCCATAGTGCTATGT 58.845 41.667 15.52 0.00 45.83 2.29
2356 2443 5.745312 TCTATTCCACCCATAGTGCTATG 57.255 43.478 11.22 11.22 45.83 2.23
2357 2444 6.959606 ATTCTATTCCACCCATAGTGCTAT 57.040 37.500 0.00 0.00 45.83 2.97
2358 2445 9.555411 TTATATTCTATTCCACCCATAGTGCTA 57.445 33.333 0.00 0.00 45.83 3.49
2359 2446 6.959606 ATATTCTATTCCACCCATAGTGCT 57.040 37.500 0.00 0.00 45.83 4.40
2360 2447 9.113838 CATTATATTCTATTCCACCCATAGTGC 57.886 37.037 0.00 0.00 45.83 4.40
2364 2451 9.003145 CCCTCATTATATTCTATTCCACCCATA 57.997 37.037 0.00 0.00 0.00 2.74
2365 2452 7.091811 CCCCTCATTATATTCTATTCCACCCAT 60.092 40.741 0.00 0.00 0.00 4.00
2366 2453 6.217487 CCCCTCATTATATTCTATTCCACCCA 59.783 42.308 0.00 0.00 0.00 4.51
2367 2454 6.353951 CCCCCTCATTATATTCTATTCCACCC 60.354 46.154 0.00 0.00 0.00 4.61
2368 2455 6.663734 CCCCCTCATTATATTCTATTCCACC 58.336 44.000 0.00 0.00 0.00 4.61
2389 2476 0.179065 GGTCGCTACACATAACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
2390 2477 0.179065 GGGTCGCTACACATAACCCC 60.179 60.000 0.00 0.00 43.19 4.95
2391 2478 0.529119 CGGGTCGCTACACATAACCC 60.529 60.000 0.00 0.00 45.10 4.11
2392 2479 0.457035 TCGGGTCGCTACACATAACC 59.543 55.000 0.00 0.00 0.00 2.85
2393 2480 1.133790 AGTCGGGTCGCTACACATAAC 59.866 52.381 0.00 0.00 0.00 1.89
2394 2481 1.402968 GAGTCGGGTCGCTACACATAA 59.597 52.381 0.00 0.00 0.00 1.90
2395 2482 1.019673 GAGTCGGGTCGCTACACATA 58.980 55.000 0.00 0.00 0.00 2.29
2396 2483 1.807886 GAGTCGGGTCGCTACACAT 59.192 57.895 0.00 0.00 0.00 3.21
2397 2484 2.683859 CGAGTCGGGTCGCTACACA 61.684 63.158 4.10 0.00 32.22 3.72
2398 2485 1.915614 TTCGAGTCGGGTCGCTACAC 61.916 60.000 13.54 0.00 39.90 2.90
2399 2486 1.028330 ATTCGAGTCGGGTCGCTACA 61.028 55.000 13.54 0.00 39.90 2.74
2400 2487 0.591741 CATTCGAGTCGGGTCGCTAC 60.592 60.000 13.54 0.00 39.90 3.58
2401 2488 1.721664 CCATTCGAGTCGGGTCGCTA 61.722 60.000 13.54 0.00 39.90 4.26
2402 2489 2.490217 CATTCGAGTCGGGTCGCT 59.510 61.111 13.54 0.00 39.90 4.93
2403 2490 2.351336 ATCCATTCGAGTCGGGTCGC 62.351 60.000 13.54 0.00 39.90 5.19
2404 2491 0.317938 GATCCATTCGAGTCGGGTCG 60.318 60.000 13.54 1.38 41.51 4.79
2405 2492 0.744874 TGATCCATTCGAGTCGGGTC 59.255 55.000 13.54 2.69 0.00 4.46
2406 2493 1.137086 CTTGATCCATTCGAGTCGGGT 59.863 52.381 13.54 0.00 31.92 5.28
2407 2494 1.137086 ACTTGATCCATTCGAGTCGGG 59.863 52.381 13.54 6.32 44.46 5.14
2408 2495 2.586258 ACTTGATCCATTCGAGTCGG 57.414 50.000 13.54 0.00 44.46 4.79
2412 2499 4.111198 CACAGAGACTTGATCCATTCGAG 58.889 47.826 0.00 0.00 41.14 4.04
2413 2500 3.677148 GCACAGAGACTTGATCCATTCGA 60.677 47.826 0.00 0.00 0.00 3.71
2414 2501 2.606725 GCACAGAGACTTGATCCATTCG 59.393 50.000 0.00 0.00 0.00 3.34
2415 2502 3.871485 AGCACAGAGACTTGATCCATTC 58.129 45.455 0.00 0.00 0.00 2.67
2416 2503 3.996921 AGCACAGAGACTTGATCCATT 57.003 42.857 0.00 0.00 0.00 3.16
2417 2504 3.996921 AAGCACAGAGACTTGATCCAT 57.003 42.857 0.00 0.00 0.00 3.41
2418 2505 4.284490 ACTTAAGCACAGAGACTTGATCCA 59.716 41.667 1.29 0.00 0.00 3.41
2419 2506 4.629200 CACTTAAGCACAGAGACTTGATCC 59.371 45.833 1.29 0.00 0.00 3.36
2420 2507 5.233988 ACACTTAAGCACAGAGACTTGATC 58.766 41.667 1.29 0.00 0.00 2.92
2421 2508 5.220710 ACACTTAAGCACAGAGACTTGAT 57.779 39.130 1.29 0.00 0.00 2.57
2422 2509 4.099419 TGACACTTAAGCACAGAGACTTGA 59.901 41.667 1.29 0.00 0.00 3.02
2423 2510 4.371786 TGACACTTAAGCACAGAGACTTG 58.628 43.478 1.29 0.00 0.00 3.16
2424 2511 4.672587 TGACACTTAAGCACAGAGACTT 57.327 40.909 1.29 0.00 0.00 3.01
2425 2512 4.322349 GGATGACACTTAAGCACAGAGACT 60.322 45.833 1.29 0.00 0.00 3.24
2426 2513 3.929610 GGATGACACTTAAGCACAGAGAC 59.070 47.826 1.29 0.00 0.00 3.36
2427 2514 3.055819 GGGATGACACTTAAGCACAGAGA 60.056 47.826 1.29 0.00 0.00 3.10
2428 2515 3.055530 AGGGATGACACTTAAGCACAGAG 60.056 47.826 1.29 0.00 0.00 3.35
2429 2516 2.906389 AGGGATGACACTTAAGCACAGA 59.094 45.455 1.29 0.00 0.00 3.41
2430 2517 3.005554 CAGGGATGACACTTAAGCACAG 58.994 50.000 1.29 0.00 0.00 3.66
2431 2518 2.290260 CCAGGGATGACACTTAAGCACA 60.290 50.000 1.29 0.90 0.00 4.57
2432 2519 2.027192 TCCAGGGATGACACTTAAGCAC 60.027 50.000 1.29 0.00 0.00 4.40
2433 2520 2.265367 TCCAGGGATGACACTTAAGCA 58.735 47.619 1.29 0.00 0.00 3.91
2434 2521 3.567478 ATCCAGGGATGACACTTAAGC 57.433 47.619 1.29 0.00 32.98 3.09
2435 2522 4.202441 CCAATCCAGGGATGACACTTAAG 58.798 47.826 0.68 0.00 34.70 1.85
2436 2523 3.591527 ACCAATCCAGGGATGACACTTAA 59.408 43.478 0.68 0.00 34.70 1.85
2437 2524 3.189606 ACCAATCCAGGGATGACACTTA 58.810 45.455 0.68 0.00 34.70 2.24
2438 2525 1.995542 ACCAATCCAGGGATGACACTT 59.004 47.619 0.68 0.00 34.70 3.16
2439 2526 1.673767 ACCAATCCAGGGATGACACT 58.326 50.000 0.68 0.00 34.70 3.55
2440 2527 3.864789 ATACCAATCCAGGGATGACAC 57.135 47.619 0.68 0.00 34.70 3.67
2445 2532 2.107204 GTCAGCATACCAATCCAGGGAT 59.893 50.000 0.00 0.00 36.23 3.85
2446 2533 1.490490 GTCAGCATACCAATCCAGGGA 59.510 52.381 0.00 0.00 0.00 4.20
2447 2534 1.212688 TGTCAGCATACCAATCCAGGG 59.787 52.381 0.00 0.00 0.00 4.45
2448 2535 2.292267 GTGTCAGCATACCAATCCAGG 58.708 52.381 0.00 0.00 0.00 4.45
2449 2536 2.679837 GTGTGTCAGCATACCAATCCAG 59.320 50.000 0.00 0.00 31.61 3.86
2450 2537 2.039613 TGTGTGTCAGCATACCAATCCA 59.960 45.455 0.00 0.00 36.12 3.41
2451 2538 2.420022 GTGTGTGTCAGCATACCAATCC 59.580 50.000 0.00 0.00 36.12 3.01
2452 2539 3.073678 TGTGTGTGTCAGCATACCAATC 58.926 45.455 0.00 0.00 36.12 2.67
2453 2540 3.076621 CTGTGTGTGTCAGCATACCAAT 58.923 45.455 0.00 0.00 36.12 3.16
2454 2541 2.158827 ACTGTGTGTGTCAGCATACCAA 60.159 45.455 0.00 0.00 36.12 3.67
2455 2542 1.416030 ACTGTGTGTGTCAGCATACCA 59.584 47.619 0.00 0.00 36.12 3.25
2456 2543 2.169832 ACTGTGTGTGTCAGCATACC 57.830 50.000 0.00 0.00 36.12 2.73
2457 2544 3.914312 AGTACTGTGTGTGTCAGCATAC 58.086 45.455 0.00 0.00 37.26 2.39
2458 2545 3.365969 CGAGTACTGTGTGTGTCAGCATA 60.366 47.826 0.00 0.00 36.50 3.14
2459 2546 2.608016 CGAGTACTGTGTGTGTCAGCAT 60.608 50.000 0.00 0.00 36.50 3.79
2460 2547 1.269051 CGAGTACTGTGTGTGTCAGCA 60.269 52.381 0.00 0.00 36.50 4.41
2461 2548 1.001706 TCGAGTACTGTGTGTGTCAGC 60.002 52.381 0.00 0.00 36.50 4.26
2462 2549 2.350868 CCTCGAGTACTGTGTGTGTCAG 60.351 54.545 12.31 0.00 38.68 3.51
2463 2550 1.607148 CCTCGAGTACTGTGTGTGTCA 59.393 52.381 12.31 0.00 0.00 3.58
2464 2551 1.878088 TCCTCGAGTACTGTGTGTGTC 59.122 52.381 12.31 0.00 0.00 3.67
2465 2552 1.977056 TCCTCGAGTACTGTGTGTGT 58.023 50.000 12.31 0.00 0.00 3.72
2466 2553 3.577649 AATCCTCGAGTACTGTGTGTG 57.422 47.619 12.31 0.00 0.00 3.82
2467 2554 5.916661 ATAAATCCTCGAGTACTGTGTGT 57.083 39.130 12.31 0.00 0.00 3.72
2468 2555 7.255569 TGTTATAAATCCTCGAGTACTGTGTG 58.744 38.462 12.31 0.00 0.00 3.82
2469 2556 7.338703 TCTGTTATAAATCCTCGAGTACTGTGT 59.661 37.037 12.31 0.00 0.00 3.72
2470 2557 7.704271 TCTGTTATAAATCCTCGAGTACTGTG 58.296 38.462 12.31 0.00 0.00 3.66
2471 2558 7.013464 CCTCTGTTATAAATCCTCGAGTACTGT 59.987 40.741 12.31 0.00 0.00 3.55
2472 2559 7.013464 ACCTCTGTTATAAATCCTCGAGTACTG 59.987 40.741 12.31 0.00 0.00 2.74
2473 2560 7.061688 ACCTCTGTTATAAATCCTCGAGTACT 58.938 38.462 12.31 0.00 0.00 2.73
2474 2561 7.274603 ACCTCTGTTATAAATCCTCGAGTAC 57.725 40.000 12.31 0.00 0.00 2.73
2475 2562 8.985315 TTACCTCTGTTATAAATCCTCGAGTA 57.015 34.615 12.31 0.00 0.00 2.59
2476 2563 7.893124 TTACCTCTGTTATAAATCCTCGAGT 57.107 36.000 12.31 0.00 0.00 4.18
2477 2564 9.413048 GATTTACCTCTGTTATAAATCCTCGAG 57.587 37.037 5.13 5.13 38.51 4.04
2478 2565 8.920174 TGATTTACCTCTGTTATAAATCCTCGA 58.080 33.333 11.47 0.00 41.51 4.04
2479 2566 8.979574 GTGATTTACCTCTGTTATAAATCCTCG 58.020 37.037 11.47 0.00 41.51 4.63
2480 2567 9.832445 TGTGATTTACCTCTGTTATAAATCCTC 57.168 33.333 11.47 7.11 41.51 3.71
2490 2577 9.959721 ACTTTATACATGTGATTTACCTCTGTT 57.040 29.630 9.11 0.00 0.00 3.16
2495 2582 9.880157 ACGTTACTTTATACATGTGATTTACCT 57.120 29.630 9.11 0.00 0.00 3.08
2526 2613 9.778741 CTGCTATTTTGGATTGAGGTAATAGTA 57.221 33.333 0.00 0.00 31.48 1.82
2527 2614 8.494433 TCTGCTATTTTGGATTGAGGTAATAGT 58.506 33.333 0.00 0.00 31.48 2.12
2528 2615 8.908786 TCTGCTATTTTGGATTGAGGTAATAG 57.091 34.615 0.00 0.00 0.00 1.73
2529 2616 9.342308 CTTCTGCTATTTTGGATTGAGGTAATA 57.658 33.333 0.00 0.00 0.00 0.98
2530 2617 7.836183 ACTTCTGCTATTTTGGATTGAGGTAAT 59.164 33.333 0.00 0.00 0.00 1.89
2531 2618 7.175104 ACTTCTGCTATTTTGGATTGAGGTAA 58.825 34.615 0.00 0.00 0.00 2.85
2532 2619 6.721318 ACTTCTGCTATTTTGGATTGAGGTA 58.279 36.000 0.00 0.00 0.00 3.08
2533 2620 5.574188 ACTTCTGCTATTTTGGATTGAGGT 58.426 37.500 0.00 0.00 0.00 3.85
2534 2621 7.121168 TGTTACTTCTGCTATTTTGGATTGAGG 59.879 37.037 0.00 0.00 0.00 3.86
2535 2622 8.044060 TGTTACTTCTGCTATTTTGGATTGAG 57.956 34.615 0.00 0.00 0.00 3.02
2536 2623 7.994425 TGTTACTTCTGCTATTTTGGATTGA 57.006 32.000 0.00 0.00 0.00 2.57
2537 2624 7.756722 CCTTGTTACTTCTGCTATTTTGGATTG 59.243 37.037 0.00 0.00 0.00 2.67
2538 2625 7.451566 ACCTTGTTACTTCTGCTATTTTGGATT 59.548 33.333 0.00 0.00 0.00 3.01
2539 2626 6.948309 ACCTTGTTACTTCTGCTATTTTGGAT 59.052 34.615 0.00 0.00 0.00 3.41
2540 2627 6.303839 ACCTTGTTACTTCTGCTATTTTGGA 58.696 36.000 0.00 0.00 0.00 3.53
2541 2628 6.575162 ACCTTGTTACTTCTGCTATTTTGG 57.425 37.500 0.00 0.00 0.00 3.28
2542 2629 9.559958 CATAACCTTGTTACTTCTGCTATTTTG 57.440 33.333 0.00 0.00 0.00 2.44
2543 2630 8.739972 CCATAACCTTGTTACTTCTGCTATTTT 58.260 33.333 0.00 0.00 0.00 1.82
2544 2631 8.107095 TCCATAACCTTGTTACTTCTGCTATTT 58.893 33.333 0.00 0.00 0.00 1.40
2545 2632 7.630082 TCCATAACCTTGTTACTTCTGCTATT 58.370 34.615 0.00 0.00 0.00 1.73
2546 2633 7.195374 TCCATAACCTTGTTACTTCTGCTAT 57.805 36.000 0.00 0.00 0.00 2.97
2547 2634 6.614694 TCCATAACCTTGTTACTTCTGCTA 57.385 37.500 0.00 0.00 0.00 3.49
2548 2635 5.499004 TCCATAACCTTGTTACTTCTGCT 57.501 39.130 0.00 0.00 0.00 4.24
2549 2636 6.183360 GGAATCCATAACCTTGTTACTTCTGC 60.183 42.308 0.00 0.00 0.00 4.26
2550 2637 7.112779 AGGAATCCATAACCTTGTTACTTCTG 58.887 38.462 0.61 0.00 0.00 3.02
2551 2638 7.272144 AGGAATCCATAACCTTGTTACTTCT 57.728 36.000 0.61 0.00 0.00 2.85
2552 2639 9.274206 GATAGGAATCCATAACCTTGTTACTTC 57.726 37.037 0.61 0.00 35.52 3.01
2553 2640 8.778059 TGATAGGAATCCATAACCTTGTTACTT 58.222 33.333 0.61 0.00 35.52 2.24
2554 2641 8.331931 TGATAGGAATCCATAACCTTGTTACT 57.668 34.615 0.61 0.00 35.52 2.24
2555 2642 8.837389 GTTGATAGGAATCCATAACCTTGTTAC 58.163 37.037 0.61 0.00 35.52 2.50
2556 2643 8.553153 TGTTGATAGGAATCCATAACCTTGTTA 58.447 33.333 0.61 0.00 35.52 2.41
2557 2644 7.339466 GTGTTGATAGGAATCCATAACCTTGTT 59.661 37.037 0.61 0.00 35.52 2.83
2558 2645 6.828785 GTGTTGATAGGAATCCATAACCTTGT 59.171 38.462 0.61 0.00 35.52 3.16
2559 2646 6.263168 GGTGTTGATAGGAATCCATAACCTTG 59.737 42.308 0.61 0.00 35.52 3.61
2560 2647 6.069088 TGGTGTTGATAGGAATCCATAACCTT 60.069 38.462 0.61 0.00 35.52 3.50
2561 2648 5.431731 TGGTGTTGATAGGAATCCATAACCT 59.568 40.000 0.61 0.00 37.76 3.50
2562 2649 5.690865 TGGTGTTGATAGGAATCCATAACC 58.309 41.667 0.61 0.00 0.00 2.85
2563 2650 7.255590 CCATTGGTGTTGATAGGAATCCATAAC 60.256 40.741 0.61 1.83 0.00 1.89
2564 2651 6.777091 CCATTGGTGTTGATAGGAATCCATAA 59.223 38.462 0.61 0.00 0.00 1.90
2565 2652 6.306199 CCATTGGTGTTGATAGGAATCCATA 58.694 40.000 0.61 0.00 0.00 2.74
2566 2653 5.142639 CCATTGGTGTTGATAGGAATCCAT 58.857 41.667 0.61 0.00 0.00 3.41
2567 2654 4.535781 CCATTGGTGTTGATAGGAATCCA 58.464 43.478 0.61 0.00 0.00 3.41
2568 2655 3.319122 GCCATTGGTGTTGATAGGAATCC 59.681 47.826 4.26 0.00 0.00 3.01
2569 2656 3.953612 TGCCATTGGTGTTGATAGGAATC 59.046 43.478 4.26 0.00 0.00 2.52
2570 2657 3.979911 TGCCATTGGTGTTGATAGGAAT 58.020 40.909 4.26 0.00 0.00 3.01
2571 2658 3.448093 TGCCATTGGTGTTGATAGGAA 57.552 42.857 4.26 0.00 0.00 3.36
2572 2659 3.448093 TTGCCATTGGTGTTGATAGGA 57.552 42.857 4.26 0.00 0.00 2.94
2573 2660 3.511146 ACTTTGCCATTGGTGTTGATAGG 59.489 43.478 4.26 0.00 0.00 2.57
2574 2661 4.789012 ACTTTGCCATTGGTGTTGATAG 57.211 40.909 4.26 0.00 0.00 2.08
2575 2662 4.586421 TCAACTTTGCCATTGGTGTTGATA 59.414 37.500 20.61 9.16 38.81 2.15
2576 2663 3.387374 TCAACTTTGCCATTGGTGTTGAT 59.613 39.130 20.61 0.25 38.81 2.57
2577 2664 2.762887 TCAACTTTGCCATTGGTGTTGA 59.237 40.909 20.61 20.61 40.58 3.18
2578 2665 3.125316 CTCAACTTTGCCATTGGTGTTG 58.875 45.455 18.12 18.12 36.93 3.33
2579 2666 2.765699 ACTCAACTTTGCCATTGGTGTT 59.234 40.909 4.26 2.66 0.00 3.32
2580 2667 2.101249 CACTCAACTTTGCCATTGGTGT 59.899 45.455 4.26 0.00 0.00 4.16
2581 2668 2.101249 ACACTCAACTTTGCCATTGGTG 59.899 45.455 4.26 0.00 35.19 4.17
2582 2669 2.387757 ACACTCAACTTTGCCATTGGT 58.612 42.857 4.26 0.00 0.00 3.67
2583 2670 3.820467 TCTACACTCAACTTTGCCATTGG 59.180 43.478 0.00 0.00 0.00 3.16
2584 2671 5.437289 TTCTACACTCAACTTTGCCATTG 57.563 39.130 0.00 0.00 0.00 2.82
2585 2672 6.568462 CGATTTCTACACTCAACTTTGCCATT 60.568 38.462 0.00 0.00 0.00 3.16
2586 2673 5.106555 CGATTTCTACACTCAACTTTGCCAT 60.107 40.000 0.00 0.00 0.00 4.40
2587 2674 4.213270 CGATTTCTACACTCAACTTTGCCA 59.787 41.667 0.00 0.00 0.00 4.92
2588 2675 4.213482 ACGATTTCTACACTCAACTTTGCC 59.787 41.667 0.00 0.00 0.00 4.52
2589 2676 5.344207 ACGATTTCTACACTCAACTTTGC 57.656 39.130 0.00 0.00 0.00 3.68
2590 2677 7.288672 GGTTACGATTTCTACACTCAACTTTG 58.711 38.462 0.00 0.00 0.00 2.77
2591 2678 6.426025 GGGTTACGATTTCTACACTCAACTTT 59.574 38.462 0.00 0.00 0.00 2.66
2592 2679 5.930569 GGGTTACGATTTCTACACTCAACTT 59.069 40.000 0.00 0.00 0.00 2.66
2593 2680 5.245526 AGGGTTACGATTTCTACACTCAACT 59.754 40.000 0.00 0.00 0.00 3.16
2594 2681 5.476614 AGGGTTACGATTTCTACACTCAAC 58.523 41.667 0.00 0.00 0.00 3.18
2595 2682 5.733620 AGGGTTACGATTTCTACACTCAA 57.266 39.130 0.00 0.00 0.00 3.02
2596 2683 6.209192 TGTTAGGGTTACGATTTCTACACTCA 59.791 38.462 0.00 0.00 0.00 3.41
2597 2684 6.624423 TGTTAGGGTTACGATTTCTACACTC 58.376 40.000 0.00 0.00 0.00 3.51
2598 2685 6.594788 TGTTAGGGTTACGATTTCTACACT 57.405 37.500 0.00 0.00 0.00 3.55
2599 2686 9.189723 GATATGTTAGGGTTACGATTTCTACAC 57.810 37.037 0.00 0.00 0.00 2.90
2600 2687 8.916062 TGATATGTTAGGGTTACGATTTCTACA 58.084 33.333 0.00 0.00 0.00 2.74
2601 2688 9.189723 GTGATATGTTAGGGTTACGATTTCTAC 57.810 37.037 0.00 0.00 0.00 2.59
2602 2689 9.139734 AGTGATATGTTAGGGTTACGATTTCTA 57.860 33.333 0.00 0.00 0.00 2.10
2603 2690 8.019656 AGTGATATGTTAGGGTTACGATTTCT 57.980 34.615 0.00 0.00 0.00 2.52
2604 2691 8.658499 AAGTGATATGTTAGGGTTACGATTTC 57.342 34.615 0.00 0.00 0.00 2.17
2605 2692 9.538508 GTAAGTGATATGTTAGGGTTACGATTT 57.461 33.333 0.00 0.00 0.00 2.17
2606 2693 8.698210 TGTAAGTGATATGTTAGGGTTACGATT 58.302 33.333 0.00 0.00 0.00 3.34
2607 2694 8.241497 TGTAAGTGATATGTTAGGGTTACGAT 57.759 34.615 0.00 0.00 0.00 3.73
2608 2695 7.643569 TGTAAGTGATATGTTAGGGTTACGA 57.356 36.000 0.00 0.00 0.00 3.43
2609 2696 7.325338 CGATGTAAGTGATATGTTAGGGTTACG 59.675 40.741 0.00 0.00 0.00 3.18
2610 2697 8.139989 ACGATGTAAGTGATATGTTAGGGTTAC 58.860 37.037 0.00 0.00 0.00 2.50
2611 2698 8.241497 ACGATGTAAGTGATATGTTAGGGTTA 57.759 34.615 0.00 0.00 0.00 2.85
2612 2699 7.120923 ACGATGTAAGTGATATGTTAGGGTT 57.879 36.000 0.00 0.00 0.00 4.11
2613 2700 6.514541 CGACGATGTAAGTGATATGTTAGGGT 60.515 42.308 0.00 0.00 0.00 4.34
2614 2701 5.856986 CGACGATGTAAGTGATATGTTAGGG 59.143 44.000 0.00 0.00 0.00 3.53
2615 2702 6.436261 ACGACGATGTAAGTGATATGTTAGG 58.564 40.000 0.00 0.00 0.00 2.69
2616 2703 8.998558 TTACGACGATGTAAGTGATATGTTAG 57.001 34.615 0.00 0.00 31.06 2.34
2617 2704 8.998558 CTTACGACGATGTAAGTGATATGTTA 57.001 34.615 17.54 0.00 43.99 2.41
2618 2705 7.909777 CTTACGACGATGTAAGTGATATGTT 57.090 36.000 17.54 0.00 43.99 2.71
2628 2715 7.087409 TGTAGGATTTCTTACGACGATGTAA 57.913 36.000 0.00 0.00 31.86 2.41
2629 2716 6.682423 TGTAGGATTTCTTACGACGATGTA 57.318 37.500 0.00 0.00 31.86 2.29
2630 2717 5.571784 TGTAGGATTTCTTACGACGATGT 57.428 39.130 0.00 0.00 31.86 3.06
2631 2718 5.803461 TGTTGTAGGATTTCTTACGACGATG 59.197 40.000 0.00 0.00 42.46 3.84
2632 2719 5.957798 TGTTGTAGGATTTCTTACGACGAT 58.042 37.500 0.00 0.00 42.46 3.73
2633 2720 5.375417 TGTTGTAGGATTTCTTACGACGA 57.625 39.130 0.00 3.53 42.46 4.20
2634 2721 5.803461 TCATGTTGTAGGATTTCTTACGACG 59.197 40.000 12.80 0.00 42.46 5.12
2635 2722 7.009357 GTCTCATGTTGTAGGATTTCTTACGAC 59.991 40.741 11.42 11.42 40.93 4.34
2636 2723 7.033791 GTCTCATGTTGTAGGATTTCTTACGA 58.966 38.462 0.00 0.00 31.86 3.43
2637 2724 6.020599 CGTCTCATGTTGTAGGATTTCTTACG 60.021 42.308 0.00 0.00 31.86 3.18
2638 2725 6.812160 ACGTCTCATGTTGTAGGATTTCTTAC 59.188 38.462 0.00 0.00 0.00 2.34
2639 2726 6.931838 ACGTCTCATGTTGTAGGATTTCTTA 58.068 36.000 0.00 0.00 0.00 2.10
2640 2727 5.794894 ACGTCTCATGTTGTAGGATTTCTT 58.205 37.500 0.00 0.00 0.00 2.52
2641 2728 5.407407 ACGTCTCATGTTGTAGGATTTCT 57.593 39.130 0.00 0.00 0.00 2.52
2642 2729 5.671329 GCAACGTCTCATGTTGTAGGATTTC 60.671 44.000 9.71 0.00 44.66 2.17
2643 2730 4.154195 GCAACGTCTCATGTTGTAGGATTT 59.846 41.667 9.71 0.00 44.66 2.17
2644 2731 3.684788 GCAACGTCTCATGTTGTAGGATT 59.315 43.478 9.71 0.00 44.66 3.01
2645 2732 3.262420 GCAACGTCTCATGTTGTAGGAT 58.738 45.455 9.71 0.00 44.66 3.24
2646 2733 2.036604 TGCAACGTCTCATGTTGTAGGA 59.963 45.455 9.71 0.00 44.66 2.94
2647 2734 2.412870 TGCAACGTCTCATGTTGTAGG 58.587 47.619 9.71 0.00 44.66 3.18
2648 2735 3.712162 CTGCAACGTCTCATGTTGTAG 57.288 47.619 10.92 10.92 46.06 2.74
2649 2736 1.798223 GCTGCAACGTCTCATGTTGTA 59.202 47.619 9.71 5.15 44.66 2.41
2650 2737 0.588252 GCTGCAACGTCTCATGTTGT 59.412 50.000 9.71 0.00 44.66 3.32
2651 2738 0.110056 GGCTGCAACGTCTCATGTTG 60.110 55.000 0.50 4.51 45.40 3.33
2652 2739 0.534877 TGGCTGCAACGTCTCATGTT 60.535 50.000 0.50 0.00 0.00 2.71
2653 2740 1.071299 TGGCTGCAACGTCTCATGT 59.929 52.632 0.50 0.00 0.00 3.21
2654 2741 1.229975 TGTGGCTGCAACGTCTCATG 61.230 55.000 2.19 0.00 0.00 3.07
2655 2742 0.534877 TTGTGGCTGCAACGTCTCAT 60.535 50.000 2.19 0.00 0.00 2.90
2656 2743 0.746204 TTTGTGGCTGCAACGTCTCA 60.746 50.000 2.19 0.00 0.00 3.27
2657 2744 0.040958 CTTTGTGGCTGCAACGTCTC 60.041 55.000 2.19 0.00 0.00 3.36
2658 2745 1.447317 CCTTTGTGGCTGCAACGTCT 61.447 55.000 2.19 0.00 0.00 4.18
2659 2746 1.008538 CCTTTGTGGCTGCAACGTC 60.009 57.895 2.19 0.00 0.00 4.34
2660 2747 2.489275 CCCTTTGTGGCTGCAACGT 61.489 57.895 2.19 0.00 0.00 3.99
2661 2748 2.336088 CCCTTTGTGGCTGCAACG 59.664 61.111 2.19 0.00 0.00 4.10
2662 2749 1.363807 GACCCTTTGTGGCTGCAAC 59.636 57.895 0.00 0.00 0.00 4.17
2663 2750 1.076412 TGACCCTTTGTGGCTGCAA 60.076 52.632 0.50 0.00 0.00 4.08
2664 2751 1.529010 CTGACCCTTTGTGGCTGCA 60.529 57.895 0.50 0.00 0.00 4.41
2665 2752 0.250727 TACTGACCCTTTGTGGCTGC 60.251 55.000 0.00 0.00 0.00 5.25
2666 2753 2.496899 ATACTGACCCTTTGTGGCTG 57.503 50.000 0.00 0.00 0.00 4.85
2667 2754 4.227300 TCAATATACTGACCCTTTGTGGCT 59.773 41.667 0.00 0.00 0.00 4.75
2668 2755 4.523083 TCAATATACTGACCCTTTGTGGC 58.477 43.478 0.00 0.00 0.00 5.01
2669 2756 6.603201 ACATTCAATATACTGACCCTTTGTGG 59.397 38.462 0.00 0.00 0.00 4.17
2670 2757 7.630242 ACATTCAATATACTGACCCTTTGTG 57.370 36.000 0.00 0.00 0.00 3.33
2671 2758 8.548877 AGTACATTCAATATACTGACCCTTTGT 58.451 33.333 0.00 0.00 0.00 2.83
2672 2759 8.964476 AGTACATTCAATATACTGACCCTTTG 57.036 34.615 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.