Multiple sequence alignment - TraesCS1A01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G191900 chr1A 100.000 3874 0 0 1 3874 347325298 347321425 0.000000e+00 7155.0
1 TraesCS1A01G191900 chr1D 92.712 1578 85 13 1 1578 274471540 274469993 0.000000e+00 2250.0
2 TraesCS1A01G191900 chr1D 88.636 1716 94 43 2186 3853 274469104 274467442 0.000000e+00 1995.0
3 TraesCS1A01G191900 chr1D 94.393 107 6 0 2244 2350 274469295 274469189 8.610000e-37 165.0
4 TraesCS1A01G191900 chr1D 86.047 129 12 5 1820 1945 274469718 274469593 2.430000e-27 134.0
5 TraesCS1A01G191900 chr1D 93.878 49 2 1 2139 2186 246002790 246002742 5.370000e-09 73.1
6 TraesCS1A01G191900 chr1B 88.582 1305 66 32 2186 3450 374018999 374017738 0.000000e+00 1507.0
7 TraesCS1A01G191900 chr1B 93.016 673 41 4 906 1578 374020596 374019930 0.000000e+00 977.0
8 TraesCS1A01G191900 chr1B 87.125 567 43 12 1 556 374021455 374020908 1.980000e-172 616.0
9 TraesCS1A01G191900 chr1B 89.062 320 23 6 3546 3855 374017716 374017399 1.690000e-103 387.0
10 TraesCS1A01G191900 chr1B 91.667 204 15 2 1944 2145 374019454 374019251 8.190000e-72 281.0
11 TraesCS1A01G191900 chr1B 94.393 107 6 0 2244 2350 374019191 374019085 8.610000e-37 165.0
12 TraesCS1A01G191900 chr1B 93.878 49 2 1 2139 2186 332093223 332093271 5.370000e-09 73.1
13 TraesCS1A01G191900 chr1B 100.000 30 0 0 1907 1936 374019516 374019487 5.410000e-04 56.5
14 TraesCS1A01G191900 chr6B 91.279 172 14 1 1580 1750 286708456 286708627 2.330000e-57 233.0
15 TraesCS1A01G191900 chrUn 91.925 161 13 0 1585 1745 311530601 311530761 3.890000e-55 226.0
16 TraesCS1A01G191900 chrUn 91.925 161 13 0 1585 1745 338700011 338699851 3.890000e-55 226.0
17 TraesCS1A01G191900 chrUn 91.925 161 13 0 1585 1745 363756308 363756468 3.890000e-55 226.0
18 TraesCS1A01G191900 chr3B 89.444 180 17 1 1575 1752 540174919 540175098 3.890000e-55 226.0
19 TraesCS1A01G191900 chr2B 90.643 171 14 2 1575 1744 616962960 616962791 3.890000e-55 226.0
20 TraesCS1A01G191900 chr2B 86.957 92 12 0 783 874 429649505 429649414 1.900000e-18 104.0
21 TraesCS1A01G191900 chr4A 90.058 171 17 0 1576 1746 729702038 729701868 5.040000e-54 222.0
22 TraesCS1A01G191900 chr4A 90.588 85 8 0 787 871 338747765 338747849 3.160000e-21 113.0
23 TraesCS1A01G191900 chr4A 87.912 91 11 0 787 877 593200944 593200854 1.470000e-19 108.0
24 TraesCS1A01G191900 chr2A 90.058 171 15 2 1575 1744 668451689 668451520 1.810000e-53 220.0
25 TraesCS1A01G191900 chr4D 89.080 174 18 1 1571 1744 230542539 230542711 8.430000e-52 215.0
26 TraesCS1A01G191900 chr4B 92.941 85 6 0 787 871 351614231 351614315 1.460000e-24 124.0
27 TraesCS1A01G191900 chr4B 92.000 50 4 0 2139 2188 270831668 270831717 1.930000e-08 71.3
28 TraesCS1A01G191900 chr2D 90.698 86 8 0 786 871 565934958 565934873 8.800000e-22 115.0
29 TraesCS1A01G191900 chr7B 89.412 85 9 0 787 871 152786830 152786746 1.470000e-19 108.0
30 TraesCS1A01G191900 chr7B 96.000 50 2 0 2139 2188 476199897 476199946 8.920000e-12 82.4
31 TraesCS1A01G191900 chr7B 97.674 43 1 0 2146 2188 707762123 707762081 1.490000e-09 75.0
32 TraesCS1A01G191900 chr5B 87.778 90 10 1 787 875 511366067 511365978 1.900000e-18 104.0
33 TraesCS1A01G191900 chr3D 87.778 90 10 1 787 875 50074647 50074558 1.900000e-18 104.0
34 TraesCS1A01G191900 chr3D 93.617 47 3 0 2142 2188 523157470 523157424 1.930000e-08 71.3
35 TraesCS1A01G191900 chr7D 96.000 50 2 0 2139 2188 452969839 452969888 8.920000e-12 82.4
36 TraesCS1A01G191900 chr6A 89.286 56 5 1 2138 2192 200254487 200254542 6.950000e-08 69.4
37 TraesCS1A01G191900 chr6D 89.091 55 4 1 2138 2192 147149395 147149343 2.500000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G191900 chr1A 347321425 347325298 3873 True 7155.000000 7155 100.000000 1 3874 1 chr1A.!!$R1 3873
1 TraesCS1A01G191900 chr1D 274467442 274471540 4098 True 1136.000000 2250 90.447000 1 3853 4 chr1D.!!$R2 3852
2 TraesCS1A01G191900 chr1B 374017399 374021455 4056 True 569.928571 1507 91.977857 1 3855 7 chr1B.!!$R1 3854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 421 0.179081 GCTTAGTTCTCGGGCGGAAT 60.179 55.0 0.00 0.0 0.00 3.01 F
1236 1379 0.250295 TCGCTACTGTTGCAGCCTTT 60.250 50.0 14.17 0.0 34.37 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 1878 0.175989 CGGCAAGGAAGTACTCCCTC 59.824 60.0 0.0 0.0 46.81 4.30 R
2933 3583 0.534412 ATCTCTCAGTTGCTCCGTGG 59.466 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.460987 CAATCCAGTCACTCCTCGCC 60.461 60.000 0.00 0.00 0.00 5.54
81 82 2.835895 GAGGAGACGGAGAGGCCC 60.836 72.222 0.00 0.00 0.00 5.80
103 104 1.811266 CAGGGTTGCGGTGATCTCG 60.811 63.158 0.00 0.00 0.00 4.04
147 148 2.669240 CCTCCCTCGTTTCCCACC 59.331 66.667 0.00 0.00 0.00 4.61
211 212 1.675641 GCCGTGGCAGTGAGGAATT 60.676 57.895 5.89 0.00 41.49 2.17
212 213 1.926511 GCCGTGGCAGTGAGGAATTG 61.927 60.000 5.89 0.00 41.49 2.32
213 214 0.606401 CCGTGGCAGTGAGGAATTGT 60.606 55.000 0.00 0.00 0.00 2.71
214 215 0.518636 CGTGGCAGTGAGGAATTGTG 59.481 55.000 0.00 0.00 0.00 3.33
215 216 0.883833 GTGGCAGTGAGGAATTGTGG 59.116 55.000 0.00 0.00 0.00 4.17
216 217 0.770499 TGGCAGTGAGGAATTGTGGA 59.230 50.000 0.00 0.00 0.00 4.02
297 298 4.899239 GCCCGCTGATCCACTCCG 62.899 72.222 0.00 0.00 0.00 4.63
359 363 1.134670 CCGCTAGGTTCTTCTTCTGGG 60.135 57.143 0.00 0.00 0.00 4.45
416 421 0.179081 GCTTAGTTCTCGGGCGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
426 431 2.548480 CTCGGGCGGAATCTTATTTTCC 59.452 50.000 0.00 0.00 39.44 3.13
495 506 1.609208 TGCAAGCCCTCTCTGTTTTC 58.391 50.000 0.00 0.00 0.00 2.29
496 507 1.133823 TGCAAGCCCTCTCTGTTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
600 742 1.191425 TCTGTTTGCGATTCGAACGTG 59.809 47.619 10.88 4.15 41.10 4.49
694 837 5.389935 GCTCACGCCAATTATTATCTACAGC 60.390 44.000 0.00 0.00 0.00 4.40
784 927 1.129917 CTCCCAGATCCTGCTCACAT 58.870 55.000 0.00 0.00 0.00 3.21
786 929 1.918262 TCCCAGATCCTGCTCACATTT 59.082 47.619 0.00 0.00 0.00 2.32
796 939 3.448686 CTGCTCACATTTACTCCCTACG 58.551 50.000 0.00 0.00 0.00 3.51
867 1010 2.710902 GCATTTTGGGACGGAGGGC 61.711 63.158 0.00 0.00 0.00 5.19
877 1020 1.340405 GGACGGAGGGCGTATATCCTA 60.340 57.143 0.00 0.00 32.74 2.94
930 1073 3.607741 CTCTCAAATCCTGCTCACATGT 58.392 45.455 0.00 0.00 0.00 3.21
941 1084 6.003326 TCCTGCTCACATGTATCAAAGAAAA 58.997 36.000 0.00 0.00 0.00 2.29
942 1085 6.489700 TCCTGCTCACATGTATCAAAGAAAAA 59.510 34.615 0.00 0.00 0.00 1.94
1194 1337 2.203549 CTGAAGGGCCAAGGGGACTC 62.204 65.000 6.18 0.00 44.19 3.36
1236 1379 0.250295 TCGCTACTGTTGCAGCCTTT 60.250 50.000 14.17 0.00 34.37 3.11
1293 1436 1.064017 ACTCTCTTGAGATCGGAGCCT 60.064 52.381 0.41 0.00 42.73 4.58
1314 1457 1.587933 GGGCGCCATTGACGGTAAAA 61.588 55.000 30.85 0.00 0.00 1.52
1323 1466 2.335316 TGACGGTAAAACAGCAGGTT 57.665 45.000 0.00 0.00 42.98 3.50
1408 1551 1.407258 GCAGGTAACCAAAGTTGCACA 59.593 47.619 0.00 0.00 40.08 4.57
1409 1552 2.159170 GCAGGTAACCAAAGTTGCACAA 60.159 45.455 0.00 0.00 40.08 3.33
1415 1558 1.202557 ACCAAAGTTGCACAATGCCAG 60.203 47.619 0.00 0.00 44.23 4.85
1428 1571 6.485984 TGCACAATGCCAGTTTTCATTTAATT 59.514 30.769 0.00 0.00 44.23 1.40
1464 1607 9.327628 CATCTGATATAATCTCCACATCATTCC 57.672 37.037 0.00 0.00 0.00 3.01
1465 1608 7.550712 TCTGATATAATCTCCACATCATTCCG 58.449 38.462 0.00 0.00 0.00 4.30
1466 1609 7.397192 TCTGATATAATCTCCACATCATTCCGA 59.603 37.037 0.00 0.00 0.00 4.55
1481 1624 1.480789 TCCGATGACGAGATTGGGAA 58.519 50.000 0.00 0.00 42.66 3.97
1486 1629 3.307242 CGATGACGAGATTGGGAAGTTTC 59.693 47.826 0.00 0.00 42.66 2.78
1490 1633 4.240096 GACGAGATTGGGAAGTTTCGTAA 58.760 43.478 0.00 0.00 40.83 3.18
1494 1637 4.324267 AGATTGGGAAGTTTCGTAAGTGG 58.676 43.478 0.00 0.00 39.48 4.00
1511 1654 8.995220 TCGTAAGTGGGATTATAATTTATGTGC 58.005 33.333 0.00 0.00 39.48 4.57
1552 1695 7.503566 TCATCATTCTCTGAAGTTGTCCTTTTT 59.496 33.333 0.00 0.00 37.44 1.94
1572 1715 1.926561 TGCACACGCTAGATGTCATC 58.073 50.000 4.52 4.52 39.64 2.92
1573 1716 1.204467 TGCACACGCTAGATGTCATCA 59.796 47.619 15.20 0.85 39.64 3.07
1578 1721 4.026228 CACACGCTAGATGTCATCAATGTC 60.026 45.833 15.20 0.00 0.00 3.06
1579 1722 4.114794 CACGCTAGATGTCATCAATGTCA 58.885 43.478 15.20 0.00 0.00 3.58
1580 1723 4.748600 CACGCTAGATGTCATCAATGTCAT 59.251 41.667 15.20 2.96 38.82 3.06
1582 1725 4.748600 CGCTAGATGTCATCAATGTCATGT 59.251 41.667 15.20 6.35 36.84 3.21
1584 1727 6.563567 CGCTAGATGTCATCAATGTCATGTTC 60.564 42.308 15.20 0.00 36.84 3.18
1585 1728 6.482641 GCTAGATGTCATCAATGTCATGTTCT 59.517 38.462 15.20 3.32 36.84 3.01
1586 1729 6.922247 AGATGTCATCAATGTCATGTTCTC 57.078 37.500 15.20 0.00 36.84 2.87
1587 1730 5.821470 AGATGTCATCAATGTCATGTTCTCC 59.179 40.000 15.20 0.00 36.84 3.71
1588 1731 4.264253 TGTCATCAATGTCATGTTCTCCC 58.736 43.478 0.00 0.00 0.00 4.30
1589 1732 4.019051 TGTCATCAATGTCATGTTCTCCCT 60.019 41.667 0.00 0.00 0.00 4.20
1590 1733 4.574013 GTCATCAATGTCATGTTCTCCCTC 59.426 45.833 0.00 0.00 0.00 4.30
1591 1734 3.634397 TCAATGTCATGTTCTCCCTCC 57.366 47.619 0.00 0.00 0.00 4.30
1593 1736 1.573108 ATGTCATGTTCTCCCTCCGT 58.427 50.000 0.00 0.00 0.00 4.69
1595 1738 1.275291 TGTCATGTTCTCCCTCCGTTC 59.725 52.381 0.00 0.00 0.00 3.95
1596 1739 0.902531 TCATGTTCTCCCTCCGTTCC 59.097 55.000 0.00 0.00 0.00 3.62
1598 1741 2.108168 CATGTTCTCCCTCCGTTCCTA 58.892 52.381 0.00 0.00 0.00 2.94
1600 1743 2.612000 TGTTCTCCCTCCGTTCCTAAA 58.388 47.619 0.00 0.00 0.00 1.85
1602 1745 4.355549 TGTTCTCCCTCCGTTCCTAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1604 1747 6.138263 TGTTCTCCCTCCGTTCCTAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
1605 1748 6.612456 TGTTCTCCCTCCGTTCCTAAATATAA 59.388 38.462 0.00 0.00 0.00 0.98
1606 1749 6.912951 TCTCCCTCCGTTCCTAAATATAAG 57.087 41.667 0.00 0.00 0.00 1.73
1607 1750 6.379579 TCTCCCTCCGTTCCTAAATATAAGT 58.620 40.000 0.00 0.00 0.00 2.24
1608 1751 6.492772 TCTCCCTCCGTTCCTAAATATAAGTC 59.507 42.308 0.00 0.00 0.00 3.01
1609 1752 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1610 1753 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1611 1754 7.015001 TCCCTCCGTTCCTAAATATAAGTCTTC 59.985 40.741 0.00 0.00 0.00 2.87
1613 1756 6.211515 TCCGTTCCTAAATATAAGTCTTCGC 58.788 40.000 0.00 0.00 0.00 4.70
1614 1757 5.981315 CCGTTCCTAAATATAAGTCTTCGCA 59.019 40.000 0.00 0.00 0.00 5.10
1615 1758 6.645415 CCGTTCCTAAATATAAGTCTTCGCAT 59.355 38.462 0.00 0.00 0.00 4.73
1616 1759 7.811236 CCGTTCCTAAATATAAGTCTTCGCATA 59.189 37.037 0.00 0.00 0.00 3.14
1617 1760 8.851416 CGTTCCTAAATATAAGTCTTCGCATAG 58.149 37.037 0.00 0.00 0.00 2.23
1618 1761 9.909644 GTTCCTAAATATAAGTCTTCGCATAGA 57.090 33.333 0.00 0.00 0.00 1.98
1625 1768 9.988815 AATATAAGTCTTCGCATAGATTTCACT 57.011 29.630 0.00 0.00 0.00 3.41
1627 1770 8.804688 ATAAGTCTTCGCATAGATTTCACTAC 57.195 34.615 0.00 0.00 0.00 2.73
1628 1771 5.274718 AGTCTTCGCATAGATTTCACTACG 58.725 41.667 0.00 0.00 0.00 3.51
1629 1772 4.441415 GTCTTCGCATAGATTTCACTACGG 59.559 45.833 0.00 0.00 0.00 4.02
1630 1773 4.337274 TCTTCGCATAGATTTCACTACGGA 59.663 41.667 0.00 0.00 0.00 4.69
1631 1774 3.961182 TCGCATAGATTTCACTACGGAC 58.039 45.455 0.00 0.00 0.00 4.79
1633 1776 3.490249 CGCATAGATTTCACTACGGACCA 60.490 47.826 0.00 0.00 0.00 4.02
1634 1777 4.632153 GCATAGATTTCACTACGGACCAT 58.368 43.478 0.00 0.00 0.00 3.55
1635 1778 5.564063 CGCATAGATTTCACTACGGACCATA 60.564 44.000 0.00 0.00 0.00 2.74
1636 1779 6.398918 GCATAGATTTCACTACGGACCATAT 58.601 40.000 0.00 0.00 0.00 1.78
1637 1780 7.544622 GCATAGATTTCACTACGGACCATATA 58.455 38.462 0.00 0.00 0.00 0.86
1638 1781 7.488471 GCATAGATTTCACTACGGACCATATAC 59.512 40.741 0.00 0.00 0.00 1.47
1639 1782 6.010294 AGATTTCACTACGGACCATATACG 57.990 41.667 0.00 0.00 0.00 3.06
1640 1783 4.572985 TTTCACTACGGACCATATACGG 57.427 45.455 0.00 0.00 0.00 4.02
1643 1786 3.754850 TCACTACGGACCATATACGGATG 59.245 47.826 0.00 0.00 0.00 3.51
1647 1790 3.093814 ACGGACCATATACGGATGCATA 58.906 45.455 0.00 0.00 0.00 3.14
1648 1791 3.704566 ACGGACCATATACGGATGCATAT 59.295 43.478 0.00 0.00 0.00 1.78
1649 1792 4.891168 ACGGACCATATACGGATGCATATA 59.109 41.667 0.00 0.00 0.00 0.86
1650 1793 5.009710 ACGGACCATATACGGATGCATATAG 59.990 44.000 0.00 0.00 0.00 1.31
1651 1794 5.240844 CGGACCATATACGGATGCATATAGA 59.759 44.000 0.00 0.00 0.00 1.98
1652 1795 6.071896 CGGACCATATACGGATGCATATAGAT 60.072 42.308 0.00 0.00 0.00 1.98
1653 1796 7.093354 GGACCATATACGGATGCATATAGATG 58.907 42.308 0.00 6.02 36.02 2.90
1674 1817 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
1686 1829 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
1687 1830 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
1688 1831 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
1689 1832 7.484007 GTGTAGATTCACTCATTTTGCTTCATG 59.516 37.037 0.00 0.00 35.68 3.07
1690 1833 6.585695 AGATTCACTCATTTTGCTTCATGT 57.414 33.333 0.00 0.00 0.00 3.21
1691 1834 6.387465 AGATTCACTCATTTTGCTTCATGTG 58.613 36.000 0.00 0.00 0.00 3.21
1692 1835 5.518848 TTCACTCATTTTGCTTCATGTGT 57.481 34.783 0.00 0.00 0.00 3.72
1693 1836 4.862350 TCACTCATTTTGCTTCATGTGTG 58.138 39.130 13.84 13.84 42.40 3.82
1694 1837 3.985279 CACTCATTTTGCTTCATGTGTGG 59.015 43.478 12.88 0.00 39.55 4.17
1695 1838 3.638160 ACTCATTTTGCTTCATGTGTGGT 59.362 39.130 0.00 0.00 0.00 4.16
1696 1839 4.232221 CTCATTTTGCTTCATGTGTGGTC 58.768 43.478 0.00 0.00 0.00 4.02
1697 1840 3.890756 TCATTTTGCTTCATGTGTGGTCT 59.109 39.130 0.00 0.00 0.00 3.85
1698 1841 5.069318 TCATTTTGCTTCATGTGTGGTCTA 58.931 37.500 0.00 0.00 0.00 2.59
1699 1842 5.711506 TCATTTTGCTTCATGTGTGGTCTAT 59.288 36.000 0.00 0.00 0.00 1.98
1700 1843 6.883756 TCATTTTGCTTCATGTGTGGTCTATA 59.116 34.615 0.00 0.00 0.00 1.31
1701 1844 6.741992 TTTTGCTTCATGTGTGGTCTATAG 57.258 37.500 0.00 0.00 0.00 1.31
1702 1845 5.420725 TTGCTTCATGTGTGGTCTATAGT 57.579 39.130 0.00 0.00 0.00 2.12
1703 1846 4.758688 TGCTTCATGTGTGGTCTATAGTG 58.241 43.478 0.00 0.00 0.00 2.74
1704 1847 4.466015 TGCTTCATGTGTGGTCTATAGTGA 59.534 41.667 0.00 0.00 0.00 3.41
1705 1848 5.046663 TGCTTCATGTGTGGTCTATAGTGAA 60.047 40.000 0.00 0.00 0.00 3.18
1706 1849 5.874810 GCTTCATGTGTGGTCTATAGTGAAA 59.125 40.000 0.00 0.00 0.00 2.69
1707 1850 6.540189 GCTTCATGTGTGGTCTATAGTGAAAT 59.460 38.462 0.00 0.00 0.00 2.17
1708 1851 7.254590 GCTTCATGTGTGGTCTATAGTGAAATC 60.255 40.741 0.00 0.00 0.00 2.17
1709 1852 7.423844 TCATGTGTGGTCTATAGTGAAATCT 57.576 36.000 0.00 0.00 0.00 2.40
1710 1853 7.492524 TCATGTGTGGTCTATAGTGAAATCTC 58.507 38.462 0.00 0.00 0.00 2.75
1711 1854 7.343057 TCATGTGTGGTCTATAGTGAAATCTCT 59.657 37.037 0.00 0.00 0.00 3.10
1712 1855 7.101652 TGTGTGGTCTATAGTGAAATCTCTC 57.898 40.000 0.00 0.00 0.00 3.20
1713 1856 6.096987 TGTGTGGTCTATAGTGAAATCTCTCC 59.903 42.308 0.00 0.00 0.00 3.71
1714 1857 6.096987 GTGTGGTCTATAGTGAAATCTCTCCA 59.903 42.308 0.00 0.00 0.00 3.86
1715 1858 6.667848 TGTGGTCTATAGTGAAATCTCTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
1716 1859 7.180229 TGTGGTCTATAGTGAAATCTCTCCAAA 59.820 37.037 0.00 0.00 0.00 3.28
1717 1860 7.708752 GTGGTCTATAGTGAAATCTCTCCAAAG 59.291 40.741 0.00 0.00 0.00 2.77
1718 1861 7.619698 TGGTCTATAGTGAAATCTCTCCAAAGA 59.380 37.037 0.00 0.00 0.00 2.52
1719 1862 7.923878 GGTCTATAGTGAAATCTCTCCAAAGAC 59.076 40.741 0.00 0.00 0.00 3.01
1720 1863 8.691797 GTCTATAGTGAAATCTCTCCAAAGACT 58.308 37.037 0.00 0.00 0.00 3.24
1721 1864 9.261035 TCTATAGTGAAATCTCTCCAAAGACTT 57.739 33.333 0.00 0.00 0.00 3.01
1738 1881 9.289782 CCAAAGACTTATATTTAGGAATGGAGG 57.710 37.037 0.00 0.00 0.00 4.30
1739 1882 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
1740 1883 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
1754 1897 0.175989 GAGGGAGTACTTCCTTGCCG 59.824 60.000 24.27 0.00 45.98 5.69
1765 2005 0.537143 TCCTTGCCGTGCATTTCAGT 60.537 50.000 0.00 0.00 38.76 3.41
1781 2021 6.034256 GCATTTCAGTGTGTTTATCTTGCATC 59.966 38.462 0.00 0.00 0.00 3.91
1784 2024 7.920160 TTCAGTGTGTTTATCTTGCATCATA 57.080 32.000 0.00 0.00 0.00 2.15
1788 2028 8.565416 CAGTGTGTTTATCTTGCATCATATCAT 58.435 33.333 0.00 0.00 0.00 2.45
1800 2041 4.485163 CATCATATCATGCATTGCCACTG 58.515 43.478 6.12 1.59 0.00 3.66
1804 2045 0.251253 TCATGCATTGCCACTGTGGA 60.251 50.000 30.23 10.96 40.96 4.02
1811 2052 3.450578 CATTGCCACTGTGGATTAATGC 58.549 45.455 30.23 12.95 40.96 3.56
1812 2053 2.512692 TGCCACTGTGGATTAATGCT 57.487 45.000 30.23 0.00 40.96 3.79
1818 2160 5.997746 GCCACTGTGGATTAATGCTCTATAA 59.002 40.000 30.23 0.00 40.96 0.98
1828 2170 9.915629 GGATTAATGCTCTATAATATAGGGTCG 57.084 37.037 8.78 0.00 0.00 4.79
1842 2184 1.073923 AGGGTCGTTGAAAGAAGGCAT 59.926 47.619 0.00 0.00 0.00 4.40
1850 2192 4.067896 GTTGAAAGAAGGCATCTGACTCA 58.932 43.478 0.00 0.00 38.79 3.41
1851 2193 3.668447 TGAAAGAAGGCATCTGACTCAC 58.332 45.455 0.00 0.00 38.79 3.51
1853 2195 2.758736 AGAAGGCATCTGACTCACAC 57.241 50.000 0.00 0.00 36.88 3.82
1858 2200 1.674221 GGCATCTGACTCACACCAGTC 60.674 57.143 0.00 0.00 42.90 3.51
1867 2209 3.993081 GACTCACACCAGTCAGATTTCAG 59.007 47.826 0.00 0.00 42.25 3.02
1896 2238 2.428544 TTGGCGCCTGTATAACCAAT 57.571 45.000 29.70 0.00 35.53 3.16
1897 2239 1.674359 TGGCGCCTGTATAACCAATG 58.326 50.000 29.70 0.00 0.00 2.82
1898 2240 1.210722 TGGCGCCTGTATAACCAATGA 59.789 47.619 29.70 0.00 0.00 2.57
1899 2241 1.602377 GGCGCCTGTATAACCAATGAC 59.398 52.381 22.15 0.00 0.00 3.06
1900 2242 2.285083 GCGCCTGTATAACCAATGACA 58.715 47.619 0.00 0.00 0.00 3.58
1902 2244 3.315191 GCGCCTGTATAACCAATGACAAT 59.685 43.478 0.00 0.00 0.00 2.71
1903 2245 4.513692 GCGCCTGTATAACCAATGACAATA 59.486 41.667 0.00 0.00 0.00 1.90
1905 2247 6.293955 GCGCCTGTATAACCAATGACAATAAT 60.294 38.462 0.00 0.00 0.00 1.28
1936 2280 3.869246 TGAAAAACTGAACCGTGTCTCTC 59.131 43.478 0.00 0.00 0.00 3.20
1937 2281 3.821421 AAAACTGAACCGTGTCTCTCT 57.179 42.857 0.00 0.00 0.00 3.10
1938 2282 4.931661 AAAACTGAACCGTGTCTCTCTA 57.068 40.909 0.00 0.00 0.00 2.43
1939 2283 4.506886 AAACTGAACCGTGTCTCTCTAG 57.493 45.455 0.00 0.00 0.00 2.43
1940 2284 3.143211 ACTGAACCGTGTCTCTCTAGT 57.857 47.619 0.00 0.00 0.00 2.57
1941 2285 3.075884 ACTGAACCGTGTCTCTCTAGTC 58.924 50.000 0.00 0.00 0.00 2.59
1942 2286 3.075148 CTGAACCGTGTCTCTCTAGTCA 58.925 50.000 0.00 0.00 0.00 3.41
1949 2328 3.502595 CGTGTCTCTCTAGTCAGTTTGGA 59.497 47.826 0.00 0.00 0.00 3.53
1954 2333 7.121463 GTGTCTCTCTAGTCAGTTTGGATCTAA 59.879 40.741 0.00 0.00 0.00 2.10
1965 2344 8.462016 GTCAGTTTGGATCTAAAGTATGCATTT 58.538 33.333 3.54 0.00 0.00 2.32
1966 2345 9.023962 TCAGTTTGGATCTAAAGTATGCATTTT 57.976 29.630 3.54 2.68 0.00 1.82
1991 2370 9.778741 TTTCTGTATCACAGTTTATCTGACTTT 57.221 29.630 6.23 0.00 46.03 2.66
1995 2374 5.825593 TCACAGTTTATCTGACTTTCCCT 57.174 39.130 1.79 0.00 46.27 4.20
2033 2412 1.356624 GCAGTGCGTTGCTTCTGTT 59.643 52.632 0.00 0.00 40.89 3.16
2056 2435 7.505585 TGTTGATTCTAGGGTCACTGAAAAATT 59.494 33.333 0.00 0.00 0.00 1.82
2068 2448 8.576442 GGTCACTGAAAAATTTCTGAAGGATTA 58.424 33.333 16.53 0.00 38.84 1.75
2087 2467 8.966069 AGGATTAATTTCCTAGTGCTCTTAAC 57.034 34.615 0.00 0.00 44.50 2.01
2095 2475 3.063997 CCTAGTGCTCTTAACGCAAATGG 59.936 47.826 0.00 0.00 39.39 3.16
2096 2476 1.200020 AGTGCTCTTAACGCAAATGGC 59.800 47.619 0.00 0.00 39.39 4.40
2110 2490 4.293415 GCAAATGGCATAAGACTGCATAC 58.707 43.478 0.00 0.00 44.12 2.39
2145 2526 8.097038 ACTGAATTATGTGTCTGTCAAGTACAT 58.903 33.333 0.00 0.00 37.50 2.29
2146 2527 8.479313 TGAATTATGTGTCTGTCAAGTACATC 57.521 34.615 0.00 0.00 37.50 3.06
2148 2529 6.605471 TTATGTGTCTGTCAAGTACATCCT 57.395 37.500 0.00 0.00 37.50 3.24
2149 2530 4.521130 TGTGTCTGTCAAGTACATCCTC 57.479 45.455 0.00 0.00 37.50 3.71
2151 2532 4.021981 TGTGTCTGTCAAGTACATCCTCTG 60.022 45.833 0.00 0.00 37.50 3.35
2153 2534 4.588951 TGTCTGTCAAGTACATCCTCTGTT 59.411 41.667 0.00 0.00 39.39 3.16
2154 2535 5.164954 GTCTGTCAAGTACATCCTCTGTTC 58.835 45.833 0.00 0.00 39.39 3.18
2155 2536 4.832823 TCTGTCAAGTACATCCTCTGTTCA 59.167 41.667 0.00 0.00 39.39 3.18
2156 2537 4.883083 TGTCAAGTACATCCTCTGTTCAC 58.117 43.478 0.00 0.00 39.39 3.18
2158 2539 5.163353 TGTCAAGTACATCCTCTGTTCACAA 60.163 40.000 0.00 0.00 39.39 3.33
2159 2540 5.758296 GTCAAGTACATCCTCTGTTCACAAA 59.242 40.000 0.00 0.00 39.39 2.83
2161 2542 6.427853 TCAAGTACATCCTCTGTTCACAAATG 59.572 38.462 0.00 0.00 39.39 2.32
2162 2543 5.869579 AGTACATCCTCTGTTCACAAATGT 58.130 37.500 0.00 0.00 39.39 2.71
2163 2544 7.004555 AGTACATCCTCTGTTCACAAATGTA 57.995 36.000 0.00 0.00 39.39 2.29
2164 2545 7.450074 AGTACATCCTCTGTTCACAAATGTAA 58.550 34.615 0.00 0.00 39.39 2.41
2165 2546 6.808008 ACATCCTCTGTTCACAAATGTAAG 57.192 37.500 0.00 0.00 32.90 2.34
2166 2547 6.533730 ACATCCTCTGTTCACAAATGTAAGA 58.466 36.000 0.00 0.00 32.90 2.10
2168 2549 4.988540 TCCTCTGTTCACAAATGTAAGACG 59.011 41.667 0.00 0.00 0.00 4.18
2172 2553 7.079182 TCTGTTCACAAATGTAAGACGTTTT 57.921 32.000 0.00 0.00 35.31 2.43
2173 2554 6.964370 TCTGTTCACAAATGTAAGACGTTTTG 59.036 34.615 0.83 4.18 35.31 2.44
2174 2555 6.030849 TGTTCACAAATGTAAGACGTTTTGG 58.969 36.000 11.59 3.01 35.31 3.28
2175 2556 4.602995 TCACAAATGTAAGACGTTTTGGC 58.397 39.130 11.59 1.81 35.31 4.52
2176 2557 4.096532 TCACAAATGTAAGACGTTTTGGCA 59.903 37.500 11.59 6.71 35.31 4.92
2177 2558 4.440758 CACAAATGTAAGACGTTTTGGCAG 59.559 41.667 11.59 0.23 35.31 4.85
2178 2559 4.097286 ACAAATGTAAGACGTTTTGGCAGT 59.903 37.500 11.59 3.55 35.31 4.40
2179 2560 4.911514 AATGTAAGACGTTTTGGCAGTT 57.088 36.364 0.83 0.00 0.00 3.16
2180 2561 4.911514 ATGTAAGACGTTTTGGCAGTTT 57.088 36.364 0.83 0.00 0.00 2.66
2181 2562 6.380095 AATGTAAGACGTTTTGGCAGTTTA 57.620 33.333 0.83 0.00 0.00 2.01
2182 2563 5.814764 TGTAAGACGTTTTGGCAGTTTAA 57.185 34.783 0.83 0.00 0.00 1.52
2183 2564 6.192234 TGTAAGACGTTTTGGCAGTTTAAA 57.808 33.333 0.83 0.00 0.00 1.52
2184 2565 6.797454 TGTAAGACGTTTTGGCAGTTTAAAT 58.203 32.000 0.83 0.00 0.00 1.40
2185 2566 7.259161 TGTAAGACGTTTTGGCAGTTTAAATT 58.741 30.769 0.83 0.00 0.00 1.82
2189 2570 6.640907 AGACGTTTTGGCAGTTTAAATTGATC 59.359 34.615 14.30 6.29 0.00 2.92
2194 2575 6.855763 TTGGCAGTTTAAATTGATCATCCT 57.144 33.333 14.30 0.00 0.00 3.24
2200 2581 8.031277 GCAGTTTAAATTGATCATCCTCTTTGT 58.969 33.333 14.30 0.00 0.00 2.83
2212 2593 9.171877 GATCATCCTCTTTGTAAACTCATCTTT 57.828 33.333 0.00 0.00 0.00 2.52
2214 2595 7.391554 TCATCCTCTTTGTAAACTCATCTTTGG 59.608 37.037 0.00 0.00 0.00 3.28
2215 2596 6.837312 TCCTCTTTGTAAACTCATCTTTGGA 58.163 36.000 0.00 0.00 0.00 3.53
2216 2597 7.461749 TCCTCTTTGTAAACTCATCTTTGGAT 58.538 34.615 0.00 0.00 0.00 3.41
2217 2598 7.944554 TCCTCTTTGTAAACTCATCTTTGGATT 59.055 33.333 0.00 0.00 0.00 3.01
2218 2599 8.025445 CCTCTTTGTAAACTCATCTTTGGATTG 58.975 37.037 0.00 0.00 0.00 2.67
2219 2600 8.690203 TCTTTGTAAACTCATCTTTGGATTGA 57.310 30.769 0.00 0.00 0.00 2.57
2220 2601 9.300681 TCTTTGTAAACTCATCTTTGGATTGAT 57.699 29.630 0.00 0.00 0.00 2.57
2221 2602 9.350357 CTTTGTAAACTCATCTTTGGATTGATG 57.650 33.333 0.00 0.00 40.82 3.07
2222 2603 8.634335 TTGTAAACTCATCTTTGGATTGATGA 57.366 30.769 0.00 0.00 44.43 2.92
2223 2604 8.812513 TGTAAACTCATCTTTGGATTGATGAT 57.187 30.769 6.19 0.00 45.16 2.45
2224 2605 9.904198 TGTAAACTCATCTTTGGATTGATGATA 57.096 29.630 6.19 0.00 45.16 2.15
2227 2608 9.863650 AAACTCATCTTTGGATTGATGATATCT 57.136 29.630 3.98 0.00 45.16 1.98
2228 2609 9.863650 AACTCATCTTTGGATTGATGATATCTT 57.136 29.630 3.98 0.00 45.16 2.40
2242 2623 9.987272 TTGATGATATCTTACACTTACATCTGG 57.013 33.333 3.98 0.00 35.45 3.86
2246 2627 7.785028 TGATATCTTACACTTACATCTGGGAGT 59.215 37.037 3.98 0.00 0.00 3.85
2256 2637 2.371841 ACATCTGGGAGTTGTTGCAGTA 59.628 45.455 0.00 0.00 0.00 2.74
2257 2638 3.009473 ACATCTGGGAGTTGTTGCAGTAT 59.991 43.478 0.00 0.00 0.00 2.12
2297 2678 2.799452 GGCAATGGGCGCATCCAAT 61.799 57.895 17.48 0.00 46.16 3.16
2302 2683 2.291209 ATGGGCGCATCCAATGAATA 57.709 45.000 11.00 0.00 40.62 1.75
2350 2731 8.981659 TCATATGTGTTATTGAAGAAGAGAGGA 58.018 33.333 1.90 0.00 0.00 3.71
2351 2732 9.775854 CATATGTGTTATTGAAGAAGAGAGGAT 57.224 33.333 0.00 0.00 0.00 3.24
2469 3117 0.761187 GGCTAGGCATGTCATGAGGA 59.239 55.000 17.24 0.00 0.00 3.71
2630 3278 1.965754 GCTCTCTCATCCTTGCCGGT 61.966 60.000 1.90 0.00 0.00 5.28
2952 3602 0.534412 CCACGGAGCAACTGAGAGAT 59.466 55.000 0.00 0.00 0.00 2.75
2978 3628 2.364970 CAGGACCATGGCAAACAAAAGA 59.635 45.455 13.04 0.00 0.00 2.52
2981 3631 3.809279 GGACCATGGCAAACAAAAGAAAG 59.191 43.478 13.04 0.00 0.00 2.62
3020 3673 0.730265 TTTGCTGCGACGTTGTTTCT 59.270 45.000 4.37 0.00 0.00 2.52
3088 3741 5.644977 AATAAAGGTTGAGCTTTACCTGC 57.355 39.130 18.28 0.00 43.88 4.85
3091 3744 1.234615 GGTTGAGCTTTACCTGCGCA 61.235 55.000 10.98 10.98 38.37 6.09
3105 3765 0.883814 TGCGCATGTGTCATGTGTGA 60.884 50.000 5.66 8.36 32.53 3.58
3106 3766 0.179207 GCGCATGTGTCATGTGTGAG 60.179 55.000 19.55 6.23 34.36 3.51
3107 3767 1.150827 CGCATGTGTCATGTGTGAGT 58.849 50.000 13.09 0.00 34.36 3.41
3108 3768 1.136169 CGCATGTGTCATGTGTGAGTG 60.136 52.381 13.09 0.00 34.36 3.51
3109 3769 1.875514 GCATGTGTCATGTGTGAGTGT 59.124 47.619 10.68 0.00 34.36 3.55
3116 3782 4.917998 GTGTCATGTGTGAGTGTAGTAGTG 59.082 45.833 0.00 0.00 34.36 2.74
3118 3784 3.056821 TCATGTGTGAGTGTAGTAGTGGC 60.057 47.826 0.00 0.00 0.00 5.01
3123 3789 3.087031 GTGAGTGTAGTAGTGGCTGGTA 58.913 50.000 0.00 0.00 0.00 3.25
3135 3801 1.892474 TGGCTGGTAATTTGGCTTGTC 59.108 47.619 0.00 0.00 0.00 3.18
3137 3803 1.135402 GCTGGTAATTTGGCTTGTCGG 60.135 52.381 0.00 0.00 0.00 4.79
3300 3966 1.340017 GCTTGGCATCTGAACCACCTA 60.340 52.381 2.54 0.00 35.10 3.08
3326 3992 4.082026 CCTTCTTCCTGGCCTGTATTTTTG 60.082 45.833 3.32 0.00 0.00 2.44
3327 3993 2.825532 TCTTCCTGGCCTGTATTTTTGC 59.174 45.455 3.32 0.00 0.00 3.68
3328 3994 1.555967 TCCTGGCCTGTATTTTTGCC 58.444 50.000 3.32 0.00 44.27 4.52
3331 3997 1.890174 GGCCTGTATTTTTGCCGCT 59.110 52.632 0.00 0.00 33.59 5.52
3332 3998 0.458370 GGCCTGTATTTTTGCCGCTG 60.458 55.000 0.00 0.00 33.59 5.18
3333 3999 0.458370 GCCTGTATTTTTGCCGCTGG 60.458 55.000 0.00 0.00 0.00 4.85
3352 4019 2.037251 TGGCTTAGTGGTGTGTTCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
3451 4119 1.675641 GTCCTGTGAATGCCCGCTT 60.676 57.895 0.00 0.00 0.00 4.68
3455 4123 0.109132 CTGTGAATGCCCGCTTTTCC 60.109 55.000 0.00 0.00 0.00 3.13
3463 4131 0.171231 GCCCGCTTTTCCTGTTCATC 59.829 55.000 0.00 0.00 0.00 2.92
3472 4140 1.351076 TCCTGTTCATCTGCAGACCA 58.649 50.000 20.97 12.29 34.87 4.02
3477 4145 2.040145 TGTTCATCTGCAGACCATGGAA 59.960 45.455 20.97 14.39 0.00 3.53
3482 4150 3.228188 TCTGCAGACCATGGAAAGTTT 57.772 42.857 21.47 0.00 0.00 2.66
3485 4153 2.238521 GCAGACCATGGAAAGTTTGGA 58.761 47.619 21.47 0.00 34.52 3.53
3486 4154 2.627699 GCAGACCATGGAAAGTTTGGAA 59.372 45.455 21.47 0.00 34.52 3.53
3487 4155 3.069443 GCAGACCATGGAAAGTTTGGAAA 59.931 43.478 21.47 0.00 34.52 3.13
3488 4156 4.620982 CAGACCATGGAAAGTTTGGAAAC 58.379 43.478 21.47 0.00 39.17 2.78
3498 4166 3.885724 AGTTTGGAAACTTGTTGGGTG 57.114 42.857 0.00 0.00 46.52 4.61
3499 4167 2.499693 AGTTTGGAAACTTGTTGGGTGG 59.500 45.455 0.00 0.00 46.52 4.61
3500 4168 1.490574 TTGGAAACTTGTTGGGTGGG 58.509 50.000 0.00 0.00 0.00 4.61
3501 4169 0.397816 TGGAAACTTGTTGGGTGGGG 60.398 55.000 0.00 0.00 0.00 4.96
3502 4170 0.397957 GGAAACTTGTTGGGTGGGGT 60.398 55.000 0.00 0.00 0.00 4.95
3503 4171 1.491668 GAAACTTGTTGGGTGGGGTT 58.508 50.000 0.00 0.00 0.00 4.11
3504 4172 1.138069 GAAACTTGTTGGGTGGGGTTG 59.862 52.381 0.00 0.00 0.00 3.77
3506 4174 0.927767 ACTTGTTGGGTGGGGTTGTA 59.072 50.000 0.00 0.00 0.00 2.41
3507 4175 1.133606 ACTTGTTGGGTGGGGTTGTAG 60.134 52.381 0.00 0.00 0.00 2.74
3508 4176 0.186386 TTGTTGGGTGGGGTTGTAGG 59.814 55.000 0.00 0.00 0.00 3.18
3509 4177 0.698198 TGTTGGGTGGGGTTGTAGGA 60.698 55.000 0.00 0.00 0.00 2.94
3525 4193 0.248565 AGGATCATCGGATGCGATGG 59.751 55.000 38.13 24.50 45.60 3.51
3526 4194 0.036952 GGATCATCGGATGCGATGGT 60.037 55.000 38.13 35.33 44.04 3.55
3527 4195 1.354040 GATCATCGGATGCGATGGTC 58.646 55.000 36.31 36.31 45.35 4.02
3528 4196 0.972134 ATCATCGGATGCGATGGTCT 59.028 50.000 38.13 24.81 44.04 3.85
3529 4197 0.752658 TCATCGGATGCGATGGTCTT 59.247 50.000 38.13 10.84 44.04 3.01
3530 4198 1.138859 TCATCGGATGCGATGGTCTTT 59.861 47.619 38.13 10.11 44.04 2.52
3531 4199 1.942657 CATCGGATGCGATGGTCTTTT 59.057 47.619 34.10 5.50 41.25 2.27
3532 4200 2.107950 TCGGATGCGATGGTCTTTTT 57.892 45.000 4.75 0.00 0.00 1.94
3533 4201 3.254470 TCGGATGCGATGGTCTTTTTA 57.746 42.857 4.75 0.00 0.00 1.52
3534 4202 3.601435 TCGGATGCGATGGTCTTTTTAA 58.399 40.909 4.75 0.00 0.00 1.52
3535 4203 3.621268 TCGGATGCGATGGTCTTTTTAAG 59.379 43.478 4.75 0.00 0.00 1.85
3536 4204 3.374058 CGGATGCGATGGTCTTTTTAAGT 59.626 43.478 0.00 0.00 0.00 2.24
3537 4205 4.142687 CGGATGCGATGGTCTTTTTAAGTT 60.143 41.667 0.00 0.00 0.00 2.66
3538 4206 5.332707 GGATGCGATGGTCTTTTTAAGTTC 58.667 41.667 0.00 0.00 0.00 3.01
3539 4207 5.123979 GGATGCGATGGTCTTTTTAAGTTCT 59.876 40.000 0.00 0.00 0.00 3.01
3540 4208 6.349363 GGATGCGATGGTCTTTTTAAGTTCTT 60.349 38.462 0.00 0.00 0.00 2.52
3541 4209 5.757886 TGCGATGGTCTTTTTAAGTTCTTG 58.242 37.500 0.00 0.00 0.00 3.02
3542 4210 4.617223 GCGATGGTCTTTTTAAGTTCTTGC 59.383 41.667 0.00 0.00 0.00 4.01
3543 4211 4.846137 CGATGGTCTTTTTAAGTTCTTGCG 59.154 41.667 0.00 0.00 0.00 4.85
3544 4212 5.560183 CGATGGTCTTTTTAAGTTCTTGCGT 60.560 40.000 0.00 0.00 0.00 5.24
3545 4213 4.915704 TGGTCTTTTTAAGTTCTTGCGTG 58.084 39.130 0.00 0.00 0.00 5.34
3546 4214 4.636648 TGGTCTTTTTAAGTTCTTGCGTGA 59.363 37.500 0.00 0.00 0.00 4.35
3547 4215 5.298276 TGGTCTTTTTAAGTTCTTGCGTGAT 59.702 36.000 0.00 0.00 0.00 3.06
3548 4216 5.625311 GGTCTTTTTAAGTTCTTGCGTGATG 59.375 40.000 0.00 0.00 0.00 3.07
3590 4258 4.768448 TGAATGTGCCTTGTGATTCTTGAT 59.232 37.500 0.00 0.00 0.00 2.57
3614 4282 5.182760 TGCACAAACAAAATCCAAAGCTTTT 59.817 32.000 9.53 0.00 0.00 2.27
3621 4289 6.232139 CAAAATCCAAAGCTTTTGTGATCC 57.768 37.500 9.53 0.00 37.50 3.36
3662 4337 1.000052 TGTCATGTTGCATTGCTGTGG 60.000 47.619 10.49 0.00 0.00 4.17
3719 4395 0.390124 AAACTTGTCGGGCGTCTGTA 59.610 50.000 0.00 0.00 0.00 2.74
3732 4408 7.758528 GTCGGGCGTCTGTATTTATATATTCTT 59.241 37.037 0.00 0.00 0.00 2.52
3766 4444 4.901849 TGAATGATCGTTTAGGGGAGAGAT 59.098 41.667 0.77 0.00 0.00 2.75
3842 4522 0.031010 GGGGACAGGGGATACAGAGT 60.031 60.000 0.00 0.00 39.74 3.24
3844 4524 2.158143 GGGGACAGGGGATACAGAGTAT 60.158 54.545 0.00 0.00 39.74 2.12
3848 4528 5.104067 GGGACAGGGGATACAGAGTATTTTT 60.104 44.000 0.00 0.00 39.74 1.94
3869 4549 3.936902 TTTTTACTCACAGTGTCGTGC 57.063 42.857 0.00 0.00 36.80 5.34
3870 4550 2.882927 TTTACTCACAGTGTCGTGCT 57.117 45.000 0.00 0.00 36.80 4.40
3871 4551 2.882927 TTACTCACAGTGTCGTGCTT 57.117 45.000 0.00 0.00 36.80 3.91
3872 4552 2.417339 TACTCACAGTGTCGTGCTTC 57.583 50.000 0.00 0.00 36.80 3.86
3873 4553 0.249489 ACTCACAGTGTCGTGCTTCC 60.249 55.000 0.00 0.00 36.80 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.902416 TGACTGGATTGGAAAAATGGGATTAT 59.098 34.615 0.00 0.00 0.00 1.28
7 8 6.154363 GTGACTGGATTGGAAAAATGGGATTA 59.846 38.462 0.00 0.00 0.00 1.75
40 41 2.520741 GGAGAGGAGGAGGAGCGG 60.521 72.222 0.00 0.00 0.00 5.52
103 104 0.525882 GCTTACCGCGAGAAGGAGAC 60.526 60.000 8.23 0.00 0.00 3.36
133 134 4.404098 CGGGGTGGGAAACGAGGG 62.404 72.222 0.00 0.00 0.00 4.30
202 203 1.156736 CCACGTCCACAATTCCTCAC 58.843 55.000 0.00 0.00 0.00 3.51
571 713 4.971830 CGAATCGCAAACAGATGCATTAAT 59.028 37.500 0.00 0.00 46.76 1.40
572 714 4.094146 TCGAATCGCAAACAGATGCATTAA 59.906 37.500 0.00 0.00 46.76 1.40
573 715 3.620821 TCGAATCGCAAACAGATGCATTA 59.379 39.130 0.00 0.00 46.76 1.90
574 716 2.419673 TCGAATCGCAAACAGATGCATT 59.580 40.909 0.00 0.00 46.76 3.56
641 784 6.820656 ACAATGATCTCACAGGTTGATAAGTC 59.179 38.462 0.00 0.00 32.17 3.01
694 837 7.905604 TGGATAGAACTGTGAGTAAAACATG 57.094 36.000 0.00 0.00 0.00 3.21
784 927 4.914177 ATTTTGGGACGTAGGGAGTAAA 57.086 40.909 0.00 0.00 0.00 2.01
786 929 7.068702 TCTTATATTTTGGGACGTAGGGAGTA 58.931 38.462 0.00 0.00 0.00 2.59
860 1003 2.125773 ACTAGGATATACGCCCTCCG 57.874 55.000 0.00 0.00 44.21 4.63
1185 1328 0.797579 TCCCCTTGTAGAGTCCCCTT 59.202 55.000 0.00 0.00 0.00 3.95
1194 1337 1.697754 AGCCCCCATCCCCTTGTAG 60.698 63.158 0.00 0.00 0.00 2.74
1236 1379 1.961394 ACAGTGAACAGGAGAGCGTTA 59.039 47.619 0.00 0.00 0.00 3.18
1350 1493 1.919600 GGCATGCCAGGAAGGAGACT 61.920 60.000 32.08 0.00 41.22 3.24
1463 1606 1.137086 ACTTCCCAATCTCGTCATCGG 59.863 52.381 0.00 0.00 37.69 4.18
1464 1607 2.586258 ACTTCCCAATCTCGTCATCG 57.414 50.000 0.00 0.00 38.55 3.84
1465 1608 3.307242 CGAAACTTCCCAATCTCGTCATC 59.693 47.826 0.00 0.00 0.00 2.92
1466 1609 3.262420 CGAAACTTCCCAATCTCGTCAT 58.738 45.455 0.00 0.00 0.00 3.06
1470 1613 4.091509 CACTTACGAAACTTCCCAATCTCG 59.908 45.833 0.00 0.00 0.00 4.04
1473 1616 3.439129 CCCACTTACGAAACTTCCCAATC 59.561 47.826 0.00 0.00 0.00 2.67
1474 1617 3.073356 TCCCACTTACGAAACTTCCCAAT 59.927 43.478 0.00 0.00 0.00 3.16
1477 1620 2.845363 TCCCACTTACGAAACTTCCC 57.155 50.000 0.00 0.00 0.00 3.97
1486 1629 8.999431 AGCACATAAATTATAATCCCACTTACG 58.001 33.333 0.00 0.00 0.00 3.18
1552 1695 2.270923 GATGACATCTAGCGTGTGCAA 58.729 47.619 8.25 0.00 46.23 4.08
1560 1703 6.482641 AGAACATGACATTGATGACATCTAGC 59.517 38.462 16.25 4.16 40.25 3.42
1572 1715 2.283298 CGGAGGGAGAACATGACATTG 58.717 52.381 0.00 0.00 0.00 2.82
1573 1716 1.909302 ACGGAGGGAGAACATGACATT 59.091 47.619 0.00 0.00 0.00 2.71
1578 1721 0.905357 AGGAACGGAGGGAGAACATG 59.095 55.000 0.00 0.00 0.00 3.21
1579 1722 2.544844 TAGGAACGGAGGGAGAACAT 57.455 50.000 0.00 0.00 0.00 2.71
1580 1723 2.314071 TTAGGAACGGAGGGAGAACA 57.686 50.000 0.00 0.00 0.00 3.18
1582 1725 6.842807 ACTTATATTTAGGAACGGAGGGAGAA 59.157 38.462 0.00 0.00 0.00 2.87
1584 1727 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1585 1728 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1586 1729 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1587 1730 6.862090 CGAAGACTTATATTTAGGAACGGAGG 59.138 42.308 0.00 0.00 0.00 4.30
1588 1731 6.362820 GCGAAGACTTATATTTAGGAACGGAG 59.637 42.308 0.00 0.00 0.00 4.63
1589 1732 6.183360 TGCGAAGACTTATATTTAGGAACGGA 60.183 38.462 0.00 0.00 0.00 4.69
1590 1733 5.981315 TGCGAAGACTTATATTTAGGAACGG 59.019 40.000 0.00 0.00 0.00 4.44
1591 1734 7.639162 ATGCGAAGACTTATATTTAGGAACG 57.361 36.000 0.00 0.00 0.00 3.95
1602 1745 7.591795 CGTAGTGAAATCTATGCGAAGACTTAT 59.408 37.037 0.00 0.00 0.00 1.73
1604 1747 5.744345 CGTAGTGAAATCTATGCGAAGACTT 59.256 40.000 0.00 0.00 0.00 3.01
1605 1748 5.274718 CGTAGTGAAATCTATGCGAAGACT 58.725 41.667 0.00 0.00 0.00 3.24
1606 1749 4.441415 CCGTAGTGAAATCTATGCGAAGAC 59.559 45.833 0.00 0.00 0.00 3.01
1607 1750 4.337274 TCCGTAGTGAAATCTATGCGAAGA 59.663 41.667 0.00 0.00 0.00 2.87
1608 1751 4.441415 GTCCGTAGTGAAATCTATGCGAAG 59.559 45.833 0.00 0.00 0.00 3.79
1609 1752 4.357142 GTCCGTAGTGAAATCTATGCGAA 58.643 43.478 0.00 0.00 0.00 4.70
1610 1753 3.243301 GGTCCGTAGTGAAATCTATGCGA 60.243 47.826 0.00 0.00 0.00 5.10
1611 1754 3.050619 GGTCCGTAGTGAAATCTATGCG 58.949 50.000 0.00 0.00 0.00 4.73
1613 1756 7.696872 CGTATATGGTCCGTAGTGAAATCTATG 59.303 40.741 0.00 0.00 0.00 2.23
1614 1757 7.148120 CCGTATATGGTCCGTAGTGAAATCTAT 60.148 40.741 2.46 0.00 0.00 1.98
1615 1758 6.149973 CCGTATATGGTCCGTAGTGAAATCTA 59.850 42.308 2.46 0.00 0.00 1.98
1616 1759 5.048224 CCGTATATGGTCCGTAGTGAAATCT 60.048 44.000 2.46 0.00 0.00 2.40
1617 1760 5.048504 TCCGTATATGGTCCGTAGTGAAATC 60.049 44.000 10.85 0.00 0.00 2.17
1618 1761 4.828939 TCCGTATATGGTCCGTAGTGAAAT 59.171 41.667 10.85 0.00 0.00 2.17
1622 1765 3.672511 GCATCCGTATATGGTCCGTAGTG 60.673 52.174 10.85 2.22 0.00 2.74
1623 1766 2.490903 GCATCCGTATATGGTCCGTAGT 59.509 50.000 10.85 0.00 0.00 2.73
1624 1767 2.490509 TGCATCCGTATATGGTCCGTAG 59.509 50.000 10.85 0.00 0.00 3.51
1625 1768 2.516906 TGCATCCGTATATGGTCCGTA 58.483 47.619 10.85 0.00 0.00 4.02
1626 1769 1.334160 TGCATCCGTATATGGTCCGT 58.666 50.000 10.85 0.00 0.00 4.69
1627 1770 2.672961 ATGCATCCGTATATGGTCCG 57.327 50.000 10.85 2.37 0.00 4.79
1628 1771 6.650427 TCTATATGCATCCGTATATGGTCC 57.350 41.667 0.19 1.86 32.71 4.46
1648 1791 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
1649 1792 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
1650 1793 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
1663 1806 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
1664 1807 7.175467 ACATGAAGCAAAATGAGTGAATCTACA 59.825 33.333 0.00 0.00 0.00 2.74
1665 1808 7.484007 CACATGAAGCAAAATGAGTGAATCTAC 59.516 37.037 0.00 0.00 0.00 2.59
1666 1809 7.175467 ACACATGAAGCAAAATGAGTGAATCTA 59.825 33.333 0.00 0.00 0.00 1.98
1667 1810 6.015688 ACACATGAAGCAAAATGAGTGAATCT 60.016 34.615 0.00 0.00 0.00 2.40
1668 1811 6.089016 CACACATGAAGCAAAATGAGTGAATC 59.911 38.462 13.81 0.00 43.69 2.52
1669 1812 5.924254 CACACATGAAGCAAAATGAGTGAAT 59.076 36.000 13.81 0.00 43.69 2.57
1670 1813 5.283294 CACACATGAAGCAAAATGAGTGAA 58.717 37.500 13.81 0.00 43.69 3.18
1671 1814 4.261698 CCACACATGAAGCAAAATGAGTGA 60.262 41.667 18.01 0.00 43.69 3.41
1672 1815 3.985279 CCACACATGAAGCAAAATGAGTG 59.015 43.478 0.00 12.74 41.90 3.51
1673 1816 3.638160 ACCACACATGAAGCAAAATGAGT 59.362 39.130 0.00 0.00 0.00 3.41
1674 1817 4.022589 AGACCACACATGAAGCAAAATGAG 60.023 41.667 0.00 0.00 0.00 2.90
1675 1818 3.890756 AGACCACACATGAAGCAAAATGA 59.109 39.130 0.00 0.00 0.00 2.57
1676 1819 4.247267 AGACCACACATGAAGCAAAATG 57.753 40.909 0.00 0.00 0.00 2.32
1677 1820 6.886459 ACTATAGACCACACATGAAGCAAAAT 59.114 34.615 6.78 0.00 0.00 1.82
1678 1821 6.149308 CACTATAGACCACACATGAAGCAAAA 59.851 38.462 6.78 0.00 0.00 2.44
1679 1822 5.643348 CACTATAGACCACACATGAAGCAAA 59.357 40.000 6.78 0.00 0.00 3.68
1680 1823 5.046663 TCACTATAGACCACACATGAAGCAA 60.047 40.000 6.78 0.00 0.00 3.91
1681 1824 4.466015 TCACTATAGACCACACATGAAGCA 59.534 41.667 6.78 0.00 0.00 3.91
1682 1825 5.011090 TCACTATAGACCACACATGAAGC 57.989 43.478 6.78 0.00 0.00 3.86
1683 1826 7.984050 AGATTTCACTATAGACCACACATGAAG 59.016 37.037 6.78 0.00 0.00 3.02
1684 1827 7.851228 AGATTTCACTATAGACCACACATGAA 58.149 34.615 6.78 0.50 0.00 2.57
1685 1828 7.343057 AGAGATTTCACTATAGACCACACATGA 59.657 37.037 6.78 0.00 0.00 3.07
1686 1829 7.495901 AGAGATTTCACTATAGACCACACATG 58.504 38.462 6.78 0.00 0.00 3.21
1687 1830 7.201956 GGAGAGATTTCACTATAGACCACACAT 60.202 40.741 6.78 0.00 0.00 3.21
1688 1831 6.096987 GGAGAGATTTCACTATAGACCACACA 59.903 42.308 6.78 0.00 0.00 3.72
1689 1832 6.096987 TGGAGAGATTTCACTATAGACCACAC 59.903 42.308 6.78 0.00 0.00 3.82
1690 1833 6.194967 TGGAGAGATTTCACTATAGACCACA 58.805 40.000 6.78 0.00 0.00 4.17
1691 1834 6.716934 TGGAGAGATTTCACTATAGACCAC 57.283 41.667 6.78 0.00 0.00 4.16
1692 1835 7.619698 TCTTTGGAGAGATTTCACTATAGACCA 59.380 37.037 6.78 0.00 0.00 4.02
1693 1836 7.923878 GTCTTTGGAGAGATTTCACTATAGACC 59.076 40.741 6.78 0.00 32.29 3.85
1694 1837 8.691797 AGTCTTTGGAGAGATTTCACTATAGAC 58.308 37.037 6.78 8.58 35.52 2.59
1695 1838 8.830915 AGTCTTTGGAGAGATTTCACTATAGA 57.169 34.615 6.78 0.00 31.07 1.98
1712 1855 9.289782 CCTCCATTCCTAAATATAAGTCTTTGG 57.710 37.037 0.00 0.00 0.00 3.28
1713 1856 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
1714 1857 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
1715 1858 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
1716 1859 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
1717 1860 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
1718 1861 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
1719 1862 9.327731 AGTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
1720 1863 9.684702 AAGTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
1721 1864 9.322769 GAAGTACTCCCTCCATTCCTAAATATA 57.677 37.037 0.00 0.00 0.00 0.86
1722 1865 7.237887 GGAAGTACTCCCTCCATTCCTAAATAT 59.762 40.741 7.14 0.00 38.44 1.28
1723 1866 6.557633 GGAAGTACTCCCTCCATTCCTAAATA 59.442 42.308 7.14 0.00 38.44 1.40
1724 1867 5.369993 GGAAGTACTCCCTCCATTCCTAAAT 59.630 44.000 7.14 0.00 38.44 1.40
1725 1868 4.720273 GGAAGTACTCCCTCCATTCCTAAA 59.280 45.833 7.14 0.00 38.44 1.85
1726 1869 4.015541 AGGAAGTACTCCCTCCATTCCTAA 60.016 45.833 13.40 0.00 46.81 2.69
1727 1870 3.536434 AGGAAGTACTCCCTCCATTCCTA 59.464 47.826 13.40 0.00 46.81 2.94
1728 1871 2.319438 AGGAAGTACTCCCTCCATTCCT 59.681 50.000 13.40 8.44 46.81 3.36
1729 1872 2.765502 AGGAAGTACTCCCTCCATTCC 58.234 52.381 13.40 6.39 46.81 3.01
1730 1873 3.682999 GCAAGGAAGTACTCCCTCCATTC 60.683 52.174 0.00 0.00 46.81 2.67
1731 1874 2.239907 GCAAGGAAGTACTCCCTCCATT 59.760 50.000 0.00 0.00 46.81 3.16
1732 1875 1.840635 GCAAGGAAGTACTCCCTCCAT 59.159 52.381 0.00 0.00 46.81 3.41
1733 1876 1.276622 GCAAGGAAGTACTCCCTCCA 58.723 55.000 0.00 0.00 46.81 3.86
1734 1877 0.542333 GGCAAGGAAGTACTCCCTCC 59.458 60.000 0.00 2.10 46.81 4.30
1735 1878 0.175989 CGGCAAGGAAGTACTCCCTC 59.824 60.000 0.00 0.00 46.81 4.30
1736 1879 0.544595 ACGGCAAGGAAGTACTCCCT 60.545 55.000 0.00 0.00 46.81 4.20
1737 1880 0.391263 CACGGCAAGGAAGTACTCCC 60.391 60.000 0.00 0.00 46.81 4.30
1738 1881 1.019805 GCACGGCAAGGAAGTACTCC 61.020 60.000 0.00 0.00 45.81 3.85
1739 1882 0.320421 TGCACGGCAAGGAAGTACTC 60.320 55.000 0.00 0.00 34.76 2.59
1740 1883 0.324943 ATGCACGGCAAGGAAGTACT 59.675 50.000 2.68 0.00 43.62 2.73
1754 1897 5.117592 GCAAGATAAACACACTGAAATGCAC 59.882 40.000 0.00 0.00 0.00 4.57
1765 2005 7.364970 GCATGATATGATGCAAGATAAACACA 58.635 34.615 20.56 0.00 46.77 3.72
1781 2021 3.552068 CCACAGTGGCAATGCATGATATG 60.552 47.826 15.76 3.67 0.00 1.78
1784 2024 0.821517 CCACAGTGGCAATGCATGAT 59.178 50.000 15.76 0.00 0.00 2.45
1788 2028 2.212812 TAATCCACAGTGGCAATGCA 57.787 45.000 15.76 0.00 37.47 3.96
1818 2160 4.163458 TGCCTTCTTTCAACGACCCTATAT 59.837 41.667 0.00 0.00 0.00 0.86
1827 2169 3.070018 AGTCAGATGCCTTCTTTCAACG 58.930 45.455 0.00 0.00 29.93 4.10
1828 2170 4.067896 TGAGTCAGATGCCTTCTTTCAAC 58.932 43.478 0.00 0.00 29.93 3.18
1830 2172 3.071457 TGTGAGTCAGATGCCTTCTTTCA 59.929 43.478 0.00 0.00 29.93 2.69
1838 2180 0.322975 ACTGGTGTGAGTCAGATGCC 59.677 55.000 0.00 0.00 35.20 4.40
1850 2192 6.463614 GCCTATATCTGAAATCTGACTGGTGT 60.464 42.308 0.00 0.00 0.00 4.16
1851 2193 5.931146 GCCTATATCTGAAATCTGACTGGTG 59.069 44.000 0.00 0.00 0.00 4.17
1853 2195 6.106648 TGCCTATATCTGAAATCTGACTGG 57.893 41.667 0.00 0.00 0.00 4.00
1858 2200 5.163784 CGCCAATGCCTATATCTGAAATCTG 60.164 44.000 0.00 0.00 0.00 2.90
1860 2202 4.437930 GCGCCAATGCCTATATCTGAAATC 60.438 45.833 0.00 0.00 0.00 2.17
1896 2238 8.306038 AGTTTTTCAGCTATGCAATTATTGTCA 58.694 29.630 6.81 5.78 0.00 3.58
1897 2239 8.589629 CAGTTTTTCAGCTATGCAATTATTGTC 58.410 33.333 6.81 0.23 0.00 3.18
1898 2240 8.306038 TCAGTTTTTCAGCTATGCAATTATTGT 58.694 29.630 6.81 0.00 0.00 2.71
1899 2241 8.692110 TCAGTTTTTCAGCTATGCAATTATTG 57.308 30.769 0.00 0.00 0.00 1.90
1900 2242 9.143631 GTTCAGTTTTTCAGCTATGCAATTATT 57.856 29.630 0.00 0.00 0.00 1.40
1902 2244 7.090173 GGTTCAGTTTTTCAGCTATGCAATTA 58.910 34.615 0.00 0.00 0.00 1.40
1903 2245 5.928264 GGTTCAGTTTTTCAGCTATGCAATT 59.072 36.000 0.00 0.00 0.00 2.32
1905 2247 4.556501 CGGTTCAGTTTTTCAGCTATGCAA 60.557 41.667 0.00 0.00 0.00 4.08
1936 2280 7.981789 TGCATACTTTAGATCCAAACTGACTAG 59.018 37.037 0.00 0.00 0.00 2.57
1937 2281 7.847096 TGCATACTTTAGATCCAAACTGACTA 58.153 34.615 0.00 0.00 0.00 2.59
1938 2282 6.711277 TGCATACTTTAGATCCAAACTGACT 58.289 36.000 0.00 0.00 0.00 3.41
1939 2283 6.985188 TGCATACTTTAGATCCAAACTGAC 57.015 37.500 0.00 0.00 0.00 3.51
1940 2284 8.579850 AAATGCATACTTTAGATCCAAACTGA 57.420 30.769 0.00 0.00 0.00 3.41
1941 2285 9.643693 AAAAATGCATACTTTAGATCCAAACTG 57.356 29.630 0.00 0.00 0.00 3.16
1942 2286 9.860898 GAAAAATGCATACTTTAGATCCAAACT 57.139 29.630 0.00 0.00 0.00 2.66
1991 2370 3.623703 CAATGAATCACATGGTGAGGGA 58.376 45.455 5.25 0.00 46.04 4.20
1995 2374 2.164827 GCAGCAATGAATCACATGGTGA 59.835 45.455 24.74 1.05 46.90 4.02
2033 2412 7.944554 AGAAATTTTTCAGTGACCCTAGAATCA 59.055 33.333 5.88 0.00 39.61 2.57
2068 2448 4.575885 TGCGTTAAGAGCACTAGGAAATT 58.424 39.130 1.77 0.00 40.01 1.82
2087 2467 1.132834 TGCAGTCTTATGCCATTTGCG 59.867 47.619 0.00 0.00 45.91 4.85
2124 2505 7.124901 AGAGGATGTACTTGACAGACACATAAT 59.875 37.037 0.00 0.00 42.79 1.28
2140 2521 7.602644 TCTTACATTTGTGAACAGAGGATGTAC 59.397 37.037 0.00 0.00 43.00 2.90
2145 2526 4.988540 CGTCTTACATTTGTGAACAGAGGA 59.011 41.667 0.00 0.00 0.00 3.71
2146 2527 4.750098 ACGTCTTACATTTGTGAACAGAGG 59.250 41.667 0.00 0.00 0.00 3.69
2148 2529 6.671614 AAACGTCTTACATTTGTGAACAGA 57.328 33.333 0.00 0.00 0.00 3.41
2149 2530 6.196353 CCAAAACGTCTTACATTTGTGAACAG 59.804 38.462 7.22 0.00 32.29 3.16
2151 2532 5.051973 GCCAAAACGTCTTACATTTGTGAAC 60.052 40.000 7.22 0.00 32.29 3.18
2153 2534 4.096532 TGCCAAAACGTCTTACATTTGTGA 59.903 37.500 7.22 0.00 32.29 3.58
2154 2535 4.355437 TGCCAAAACGTCTTACATTTGTG 58.645 39.130 7.22 1.66 32.29 3.33
2155 2536 4.097286 ACTGCCAAAACGTCTTACATTTGT 59.903 37.500 7.22 0.00 32.29 2.83
2156 2537 4.606961 ACTGCCAAAACGTCTTACATTTG 58.393 39.130 0.00 0.00 33.62 2.32
2158 2539 4.911514 AACTGCCAAAACGTCTTACATT 57.088 36.364 0.00 0.00 0.00 2.71
2159 2540 4.911514 AAACTGCCAAAACGTCTTACAT 57.088 36.364 0.00 0.00 0.00 2.29
2161 2542 7.432838 TCAATTTAAACTGCCAAAACGTCTTAC 59.567 33.333 0.00 0.00 0.00 2.34
2162 2543 7.481642 TCAATTTAAACTGCCAAAACGTCTTA 58.518 30.769 0.00 0.00 0.00 2.10
2163 2544 6.334202 TCAATTTAAACTGCCAAAACGTCTT 58.666 32.000 0.00 0.00 0.00 3.01
2164 2545 5.897050 TCAATTTAAACTGCCAAAACGTCT 58.103 33.333 0.00 0.00 0.00 4.18
2165 2546 6.419413 TGATCAATTTAAACTGCCAAAACGTC 59.581 34.615 0.00 0.00 0.00 4.34
2166 2547 6.276847 TGATCAATTTAAACTGCCAAAACGT 58.723 32.000 0.00 0.00 0.00 3.99
2168 2549 7.603784 AGGATGATCAATTTAAACTGCCAAAAC 59.396 33.333 0.00 0.00 0.00 2.43
2172 2553 6.189859 AGAGGATGATCAATTTAAACTGCCA 58.810 36.000 0.00 0.00 0.00 4.92
2173 2554 6.705863 AGAGGATGATCAATTTAAACTGCC 57.294 37.500 0.00 0.00 0.00 4.85
2174 2555 8.031277 ACAAAGAGGATGATCAATTTAAACTGC 58.969 33.333 0.00 0.00 0.00 4.40
2181 2562 9.300681 TGAGTTTACAAAGAGGATGATCAATTT 57.699 29.630 0.00 0.00 0.00 1.82
2182 2563 8.868522 TGAGTTTACAAAGAGGATGATCAATT 57.131 30.769 0.00 0.00 0.00 2.32
2183 2564 9.118300 GATGAGTTTACAAAGAGGATGATCAAT 57.882 33.333 0.00 0.00 0.00 2.57
2184 2565 8.324306 AGATGAGTTTACAAAGAGGATGATCAA 58.676 33.333 0.00 0.00 0.00 2.57
2185 2566 7.855375 AGATGAGTTTACAAAGAGGATGATCA 58.145 34.615 0.00 0.00 0.00 2.92
2189 2570 7.391554 TCCAAAGATGAGTTTACAAAGAGGATG 59.608 37.037 0.00 0.00 0.00 3.51
2194 2575 8.690203 TCAATCCAAAGATGAGTTTACAAAGA 57.310 30.769 0.00 0.00 31.29 2.52
2216 2597 9.987272 CCAGATGTAAGTGTAAGATATCATCAA 57.013 33.333 5.32 0.00 34.71 2.57
2217 2598 8.588472 CCCAGATGTAAGTGTAAGATATCATCA 58.412 37.037 5.32 0.00 34.71 3.07
2218 2599 8.807118 TCCCAGATGTAAGTGTAAGATATCATC 58.193 37.037 5.32 0.00 0.00 2.92
2219 2600 8.727100 TCCCAGATGTAAGTGTAAGATATCAT 57.273 34.615 5.32 0.00 0.00 2.45
2220 2601 7.785028 ACTCCCAGATGTAAGTGTAAGATATCA 59.215 37.037 5.32 0.00 0.00 2.15
2221 2602 8.184304 ACTCCCAGATGTAAGTGTAAGATATC 57.816 38.462 0.00 0.00 0.00 1.63
2222 2603 8.424918 CAACTCCCAGATGTAAGTGTAAGATAT 58.575 37.037 0.00 0.00 0.00 1.63
2223 2604 7.399191 ACAACTCCCAGATGTAAGTGTAAGATA 59.601 37.037 0.00 0.00 28.94 1.98
2224 2605 6.213600 ACAACTCCCAGATGTAAGTGTAAGAT 59.786 38.462 0.00 0.00 28.94 2.40
2225 2606 5.542635 ACAACTCCCAGATGTAAGTGTAAGA 59.457 40.000 0.00 0.00 28.94 2.10
2226 2607 5.794894 ACAACTCCCAGATGTAAGTGTAAG 58.205 41.667 0.00 0.00 28.94 2.34
2227 2608 5.818678 ACAACTCCCAGATGTAAGTGTAA 57.181 39.130 0.00 0.00 28.94 2.41
2228 2609 5.547465 CAACAACTCCCAGATGTAAGTGTA 58.453 41.667 0.00 0.00 29.45 2.90
2229 2610 4.389374 CAACAACTCCCAGATGTAAGTGT 58.611 43.478 0.00 0.00 29.45 3.55
2230 2611 3.189287 GCAACAACTCCCAGATGTAAGTG 59.811 47.826 0.00 0.00 29.45 3.16
2231 2612 3.181445 TGCAACAACTCCCAGATGTAAGT 60.181 43.478 0.00 0.00 29.45 2.24
2232 2613 3.411446 TGCAACAACTCCCAGATGTAAG 58.589 45.455 0.00 0.00 29.45 2.34
2233 2614 3.181445 ACTGCAACAACTCCCAGATGTAA 60.181 43.478 0.00 0.00 29.45 2.41
2234 2615 2.371841 ACTGCAACAACTCCCAGATGTA 59.628 45.455 0.00 0.00 29.45 2.29
2235 2616 1.143684 ACTGCAACAACTCCCAGATGT 59.856 47.619 0.00 0.00 32.27 3.06
2236 2617 1.901591 ACTGCAACAACTCCCAGATG 58.098 50.000 0.00 0.00 0.00 2.90
2237 2618 4.012374 CAATACTGCAACAACTCCCAGAT 58.988 43.478 0.00 0.00 0.00 2.90
2238 2619 3.411446 CAATACTGCAACAACTCCCAGA 58.589 45.455 0.00 0.00 0.00 3.86
2239 2620 3.837213 CAATACTGCAACAACTCCCAG 57.163 47.619 0.00 0.00 0.00 4.45
2256 2637 4.273969 CAGCCAAACAAAATCAAGTGCAAT 59.726 37.500 0.00 0.00 0.00 3.56
2257 2638 3.622163 CAGCCAAACAAAATCAAGTGCAA 59.378 39.130 0.00 0.00 0.00 4.08
2350 2731 5.614308 TGCATATAACTCAGCAGCTGTAAT 58.386 37.500 22.10 12.99 32.61 1.89
2351 2732 5.022282 TGCATATAACTCAGCAGCTGTAA 57.978 39.130 22.10 2.77 32.61 2.41
2453 3101 1.473257 GCGTTCCTCATGACATGCCTA 60.473 52.381 10.76 0.00 0.00 3.93
2564 3212 1.153249 GCCGGCCATGTACTGCTTA 60.153 57.895 18.11 0.00 0.00 3.09
2900 3550 1.502640 CGCGTCGGAGAAGAGACTT 59.497 57.895 0.00 0.00 38.10 3.01
2901 3551 3.179481 CGCGTCGGAGAAGAGACT 58.821 61.111 0.00 0.00 38.10 3.24
2933 3583 0.534412 ATCTCTCAGTTGCTCCGTGG 59.466 55.000 0.00 0.00 0.00 4.94
2952 3602 3.772387 TGTTTGCCATGGTCCTGAATTA 58.228 40.909 14.67 0.00 0.00 1.40
2981 3631 8.498358 CAGCAAAGAAGAATGGTTAATTTTTCC 58.502 33.333 0.00 0.00 39.22 3.13
3020 3673 2.819608 GCCAGTCTATGCAAGGTTTTCA 59.180 45.455 0.00 0.00 0.00 2.69
3088 3741 1.136169 CACTCACACATGACACATGCG 60.136 52.381 0.00 5.15 0.00 4.73
3091 3744 4.607293 ACTACACTCACACATGACACAT 57.393 40.909 0.00 0.00 0.00 3.21
3105 3765 5.488341 CAAATTACCAGCCACTACTACACT 58.512 41.667 0.00 0.00 0.00 3.55
3106 3766 4.634443 CCAAATTACCAGCCACTACTACAC 59.366 45.833 0.00 0.00 0.00 2.90
3107 3767 4.839121 CCAAATTACCAGCCACTACTACA 58.161 43.478 0.00 0.00 0.00 2.74
3108 3768 3.626217 GCCAAATTACCAGCCACTACTAC 59.374 47.826 0.00 0.00 0.00 2.73
3109 3769 3.521937 AGCCAAATTACCAGCCACTACTA 59.478 43.478 0.00 0.00 0.00 1.82
3116 3782 1.135402 CGACAAGCCAAATTACCAGCC 60.135 52.381 0.00 0.00 0.00 4.85
3118 3784 2.432444 TCCGACAAGCCAAATTACCAG 58.568 47.619 0.00 0.00 0.00 4.00
3123 3789 2.247358 ACCATTCCGACAAGCCAAATT 58.753 42.857 0.00 0.00 0.00 1.82
3135 3801 1.750399 CTCCCAGCCAACCATTCCG 60.750 63.158 0.00 0.00 0.00 4.30
3137 3803 0.967380 CCACTCCCAGCCAACCATTC 60.967 60.000 0.00 0.00 0.00 2.67
3300 3966 1.068352 ACAGGCCAGGAAGAAGGGTT 61.068 55.000 5.01 0.00 0.00 4.11
3327 3993 2.034879 CACACCACTAAGCCAGCGG 61.035 63.158 0.00 0.00 32.23 5.52
3328 3994 0.884704 AACACACCACTAAGCCAGCG 60.885 55.000 0.00 0.00 0.00 5.18
3329 3995 0.875059 GAACACACCACTAAGCCAGC 59.125 55.000 0.00 0.00 0.00 4.85
3331 3997 2.037251 GAGAGAACACACCACTAAGCCA 59.963 50.000 0.00 0.00 0.00 4.75
3332 3998 2.613223 GGAGAGAACACACCACTAAGCC 60.613 54.545 0.00 0.00 0.00 4.35
3333 3999 2.300437 AGGAGAGAACACACCACTAAGC 59.700 50.000 0.00 0.00 0.00 3.09
3334 4000 3.574396 TGAGGAGAGAACACACCACTAAG 59.426 47.826 0.00 0.00 0.00 2.18
3335 4001 3.572642 TGAGGAGAGAACACACCACTAA 58.427 45.455 0.00 0.00 0.00 2.24
3352 4019 2.040278 TCCACCCAGAACAAAGATGAGG 59.960 50.000 0.00 0.00 0.00 3.86
3451 4119 2.106338 TGGTCTGCAGATGAACAGGAAA 59.894 45.455 21.47 0.00 34.57 3.13
3455 4123 2.014857 CCATGGTCTGCAGATGAACAG 58.985 52.381 21.47 8.15 34.39 3.16
3463 4131 2.029649 CCAAACTTTCCATGGTCTGCAG 60.030 50.000 12.58 7.63 0.00 4.41
3482 4150 0.397816 CCCCACCCAACAAGTTTCCA 60.398 55.000 0.00 0.00 0.00 3.53
3485 4153 1.199615 CAACCCCACCCAACAAGTTT 58.800 50.000 0.00 0.00 0.00 2.66
3486 4154 0.041982 ACAACCCCACCCAACAAGTT 59.958 50.000 0.00 0.00 0.00 2.66
3487 4155 0.927767 TACAACCCCACCCAACAAGT 59.072 50.000 0.00 0.00 0.00 3.16
3488 4156 1.616159 CTACAACCCCACCCAACAAG 58.384 55.000 0.00 0.00 0.00 3.16
3489 4157 0.186386 CCTACAACCCCACCCAACAA 59.814 55.000 0.00 0.00 0.00 2.83
3491 4159 0.702316 ATCCTACAACCCCACCCAAC 59.298 55.000 0.00 0.00 0.00 3.77
3492 4160 0.996583 GATCCTACAACCCCACCCAA 59.003 55.000 0.00 0.00 0.00 4.12
3493 4161 0.178858 TGATCCTACAACCCCACCCA 60.179 55.000 0.00 0.00 0.00 4.51
3494 4162 1.143073 GATGATCCTACAACCCCACCC 59.857 57.143 0.00 0.00 0.00 4.61
3496 4164 1.202651 CCGATGATCCTACAACCCCAC 60.203 57.143 0.00 0.00 0.00 4.61
3498 4166 1.420430 TCCGATGATCCTACAACCCC 58.580 55.000 0.00 0.00 0.00 4.95
3499 4167 2.872038 GCATCCGATGATCCTACAACCC 60.872 54.545 12.79 0.00 0.00 4.11
3500 4168 2.417719 GCATCCGATGATCCTACAACC 58.582 52.381 12.79 0.00 0.00 3.77
3501 4169 2.061773 CGCATCCGATGATCCTACAAC 58.938 52.381 12.79 0.00 36.29 3.32
3502 4170 1.960689 TCGCATCCGATGATCCTACAA 59.039 47.619 12.79 0.00 38.82 2.41
3503 4171 1.616159 TCGCATCCGATGATCCTACA 58.384 50.000 12.79 0.00 38.82 2.74
3525 4193 6.427150 TCATCACGCAAGAACTTAAAAAGAC 58.573 36.000 0.00 0.00 43.62 3.01
3526 4194 6.612247 TCATCACGCAAGAACTTAAAAAGA 57.388 33.333 0.00 0.00 43.62 2.52
3527 4195 7.301054 AGATCATCACGCAAGAACTTAAAAAG 58.699 34.615 0.00 0.00 43.62 2.27
3528 4196 7.202016 AGATCATCACGCAAGAACTTAAAAA 57.798 32.000 0.00 0.00 43.62 1.94
3529 4197 6.801539 AGATCATCACGCAAGAACTTAAAA 57.198 33.333 0.00 0.00 43.62 1.52
3530 4198 6.801539 AAGATCATCACGCAAGAACTTAAA 57.198 33.333 0.00 0.00 43.62 1.52
3531 4199 6.801539 AAAGATCATCACGCAAGAACTTAA 57.198 33.333 0.00 0.00 43.62 1.85
3532 4200 6.801539 AAAAGATCATCACGCAAGAACTTA 57.198 33.333 0.00 0.00 43.62 2.24
3533 4201 5.695851 AAAAGATCATCACGCAAGAACTT 57.304 34.783 0.00 0.00 43.62 2.66
3534 4202 5.695851 AAAAAGATCATCACGCAAGAACT 57.304 34.783 0.00 0.00 43.62 3.01
3535 4203 7.078228 ACTTAAAAAGATCATCACGCAAGAAC 58.922 34.615 0.00 0.00 43.62 3.01
3536 4204 7.202016 ACTTAAAAAGATCATCACGCAAGAA 57.798 32.000 0.00 0.00 43.62 2.52
3537 4205 6.801539 ACTTAAAAAGATCATCACGCAAGA 57.198 33.333 0.00 0.00 43.62 3.02
3538 4206 7.301054 AGAACTTAAAAAGATCATCACGCAAG 58.699 34.615 0.00 0.00 36.66 4.01
3539 4207 7.202016 AGAACTTAAAAAGATCATCACGCAA 57.798 32.000 0.00 0.00 33.19 4.85
3540 4208 6.801539 AGAACTTAAAAAGATCATCACGCA 57.198 33.333 0.00 0.00 33.19 5.24
3541 4209 6.032880 GCAAGAACTTAAAAAGATCATCACGC 59.967 38.462 0.00 0.00 33.19 5.34
3542 4210 7.269937 CAGCAAGAACTTAAAAAGATCATCACG 59.730 37.037 0.00 0.00 33.19 4.35
3543 4211 8.292448 TCAGCAAGAACTTAAAAAGATCATCAC 58.708 33.333 0.00 0.00 33.19 3.06
3544 4212 8.394971 TCAGCAAGAACTTAAAAAGATCATCA 57.605 30.769 0.00 0.00 33.19 3.07
3545 4213 9.852091 ATTCAGCAAGAACTTAAAAAGATCATC 57.148 29.630 0.00 0.00 39.49 2.92
3546 4214 9.635520 CATTCAGCAAGAACTTAAAAAGATCAT 57.364 29.630 0.00 0.00 39.49 2.45
3547 4215 8.632679 ACATTCAGCAAGAACTTAAAAAGATCA 58.367 29.630 0.00 0.00 39.49 2.92
3548 4216 8.909671 CACATTCAGCAAGAACTTAAAAAGATC 58.090 33.333 0.00 0.00 39.49 2.75
3590 4258 3.871485 AGCTTTGGATTTTGTTTGTGCA 58.129 36.364 0.00 0.00 0.00 4.57
3614 4282 3.897505 TCTCAAGTCTCAACTGGATCACA 59.102 43.478 0.00 0.00 34.86 3.58
3621 4289 2.036992 AGCCTGTCTCAAGTCTCAACTG 59.963 50.000 0.00 0.00 35.36 3.16
3662 4337 1.490693 CCTGACACACACGCAGTCAC 61.491 60.000 0.00 0.00 41.61 3.67
3672 4347 1.725641 TCATCGCAATCCTGACACAC 58.274 50.000 0.00 0.00 0.00 3.82
3755 4433 0.759436 GACGGGCAATCTCTCCCCTA 60.759 60.000 0.00 0.00 39.39 3.53
3756 4434 2.041265 ACGGGCAATCTCTCCCCT 59.959 61.111 0.00 0.00 39.39 4.79
3759 4437 0.537188 TTCAGACGGGCAATCTCTCC 59.463 55.000 0.00 0.00 0.00 3.71
3760 4438 2.611225 ATTCAGACGGGCAATCTCTC 57.389 50.000 0.00 0.00 0.00 3.20
3761 4439 3.274288 GAAATTCAGACGGGCAATCTCT 58.726 45.455 0.00 0.00 0.00 3.10
3766 4444 5.713792 TTAAATGAAATTCAGACGGGCAA 57.286 34.783 1.10 0.00 33.67 4.52
3772 4450 7.945033 TGGCACTTTTAAATGAAATTCAGAC 57.055 32.000 8.00 0.00 33.67 3.51
3773 4451 8.954950 TTTGGCACTTTTAAATGAAATTCAGA 57.045 26.923 8.00 0.00 33.67 3.27
3854 4534 0.249489 GGAAGCACGACACTGTGAGT 60.249 55.000 15.86 10.99 42.55 3.41
3855 4535 2.522060 GGAAGCACGACACTGTGAG 58.478 57.895 15.86 10.34 42.55 3.51
3856 4536 4.750460 GGAAGCACGACACTGTGA 57.250 55.556 15.86 0.00 42.55 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.