Multiple sequence alignment - TraesCS1A01G191400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G191400 chr1A 100.000 3954 0 0 1 3954 345787051 345791004 0.000000e+00 7302.0
1 TraesCS1A01G191400 chr1B 95.259 2004 48 12 1510 3504 373145603 373147568 0.000000e+00 3131.0
2 TraesCS1A01G191400 chr1B 89.189 1517 81 25 1 1505 373144124 373145569 0.000000e+00 1816.0
3 TraesCS1A01G191400 chr1B 89.474 152 15 1 3537 3688 647304100 647303950 1.450000e-44 191.0
4 TraesCS1A01G191400 chr1D 91.510 2026 98 33 516 2510 273815413 273817395 0.000000e+00 2721.0
5 TraesCS1A01G191400 chr1D 96.211 1003 29 5 2505 3504 273817495 273818491 0.000000e+00 1633.0
6 TraesCS1A01G191400 chr1D 90.506 474 27 11 1 464 273814941 273815406 9.390000e-171 610.0
7 TraesCS1A01G191400 chr1D 78.182 220 32 6 3535 3744 83688861 83689074 4.150000e-25 126.0
8 TraesCS1A01G191400 chr1D 82.353 119 18 2 1387 1505 103224811 103224696 2.510000e-17 100.0
9 TraesCS1A01G191400 chr1D 93.443 61 3 1 3688 3747 38291187 38291247 5.440000e-14 89.8
10 TraesCS1A01G191400 chr1D 95.652 46 1 1 3533 3577 483907684 483907639 5.480000e-09 73.1
11 TraesCS1A01G191400 chr6B 95.614 114 5 0 3575 3688 438623455 438623342 2.430000e-42 183.0
12 TraesCS1A01G191400 chr6B 90.625 128 7 4 3575 3699 560789093 560788968 8.790000e-37 165.0
13 TraesCS1A01G191400 chr7A 92.742 124 5 4 3567 3688 510382136 510382257 4.060000e-40 176.0
14 TraesCS1A01G191400 chr6A 93.913 115 7 0 3574 3688 447643846 447643732 1.460000e-39 174.0
15 TraesCS1A01G191400 chr6A 89.231 65 6 1 3514 3578 75913624 75913687 3.280000e-11 80.5
16 TraesCS1A01G191400 chr5A 93.277 119 6 2 3571 3688 594645671 594645788 1.460000e-39 174.0
17 TraesCS1A01G191400 chr4A 93.913 115 7 0 3572 3686 603668909 603669023 1.460000e-39 174.0
18 TraesCS1A01G191400 chr2A 93.220 118 8 0 3571 3688 12628357 12628240 1.460000e-39 174.0
19 TraesCS1A01G191400 chr2A 95.918 49 2 0 3538 3586 177665322 177665274 3.280000e-11 80.5
20 TraesCS1A01G191400 chr2A 90.000 60 6 0 3536 3595 700986273 700986214 1.180000e-10 78.7
21 TraesCS1A01G191400 chr2A 100.000 28 0 0 3735 3762 247004113 247004086 7.000000e-03 52.8
22 TraesCS1A01G191400 chr3A 80.365 219 28 5 3536 3744 686185407 686185620 6.840000e-33 152.0
23 TraesCS1A01G191400 chr3A 100.000 28 0 0 404 431 171034880 171034907 7.000000e-03 52.8
24 TraesCS1A01G191400 chr3A 100.000 28 0 0 3512 3539 440422189 440422162 7.000000e-03 52.8
25 TraesCS1A01G191400 chr3B 80.435 138 25 1 3573 3708 305282891 305282754 1.940000e-18 104.0
26 TraesCS1A01G191400 chr3B 91.228 57 5 0 3688 3744 804729645 804729701 1.180000e-10 78.7
27 TraesCS1A01G191400 chr3B 100.000 28 0 0 406 433 828146285 828146258 7.000000e-03 52.8
28 TraesCS1A01G191400 chr5D 96.610 59 2 0 3688 3746 292715825 292715883 9.040000e-17 99.0
29 TraesCS1A01G191400 chr7B 92.188 64 3 2 3514 3577 545104393 545104454 5.440000e-14 89.8
30 TraesCS1A01G191400 chr7B 85.714 56 5 3 3506 3558 578034418 578034363 5.520000e-04 56.5
31 TraesCS1A01G191400 chr4B 93.220 59 4 0 3688 3746 671812059 671812117 1.960000e-13 87.9
32 TraesCS1A01G191400 chr6D 94.444 54 3 0 3535 3588 62122698 62122751 2.530000e-12 84.2
33 TraesCS1A01G191400 chr6D 87.692 65 7 1 3514 3578 59626091 59626154 1.520000e-09 75.0
34 TraesCS1A01G191400 chr5B 92.857 56 4 0 3688 3743 626252145 626252200 9.110000e-12 82.4
35 TraesCS1A01G191400 chr2B 85.526 76 11 0 3691 3766 245476453 245476378 3.280000e-11 80.5
36 TraesCS1A01G191400 chr2B 91.525 59 1 4 3533 3588 625549851 625549908 1.180000e-10 78.7
37 TraesCS1A01G191400 chr2B 91.379 58 1 4 3535 3589 582299476 582299532 4.240000e-10 76.8
38 TraesCS1A01G191400 chr2B 100.000 30 0 0 3733 3762 11037589 11037618 5.520000e-04 56.5
39 TraesCS1A01G191400 chr7D 91.228 57 5 0 3688 3744 473596225 473596281 1.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G191400 chr1A 345787051 345791004 3953 False 7302.000000 7302 100.000000 1 3954 1 chr1A.!!$F1 3953
1 TraesCS1A01G191400 chr1B 373144124 373147568 3444 False 2473.500000 3131 92.224000 1 3504 2 chr1B.!!$F1 3503
2 TraesCS1A01G191400 chr1D 273814941 273818491 3550 False 1654.666667 2721 92.742333 1 3504 3 chr1D.!!$F3 3503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 668 0.458669 GAGTTAGTGCGGATCCGGAA 59.541 55.000 33.98 16.24 42.21 4.30 F
1123 1150 0.263468 GTAAGCCTCCTCCTCCTCCT 59.737 60.000 0.00 0.00 0.00 3.69 F
1269 1297 0.388520 GAGTGGATTTGGGCGTTTGC 60.389 55.000 0.00 0.00 41.71 3.68 F
1507 1540 1.073763 CTTGTGAATGGTGGGAGTCCA 59.926 52.381 12.30 0.00 41.58 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1958 0.108662 CTGACTGGTAGCGCACATGA 60.109 55.000 11.47 0.0 0.00 3.07 R
2791 2981 0.908910 ACTCGGTGATGGTGCCATTA 59.091 50.000 5.08 0.0 36.70 1.90 R
2806 2996 4.092091 CGGATTTTCTTCCTCAAAGACTCG 59.908 45.833 0.00 0.0 43.75 4.18 R
3038 3230 5.211174 TGATGGCAGATCAATGACTAGAG 57.789 43.478 0.00 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 7.982354 GGCGAAAGGTATAATATCTTGAGCTAT 59.018 37.037 0.00 0.00 34.56 2.97
81 83 5.042463 TGAGCTATACTAGTCAGAGCTGT 57.958 43.478 23.54 7.60 43.39 4.40
106 108 0.740737 AACCAAGTGCAGTTCAGTGC 59.259 50.000 3.08 0.00 44.27 4.40
172 177 5.924475 TGTTCTGCTAGCTTTGTTTCTAC 57.076 39.130 17.23 2.23 0.00 2.59
173 178 5.611374 TGTTCTGCTAGCTTTGTTTCTACT 58.389 37.500 17.23 0.00 0.00 2.57
174 179 6.755206 TGTTCTGCTAGCTTTGTTTCTACTA 58.245 36.000 17.23 0.00 0.00 1.82
184 189 8.446599 AGCTTTGTTTCTACTAGCTTGTTAAA 57.553 30.769 6.03 5.40 38.77 1.52
265 271 2.124695 GATCTGGGAACGCCACCC 60.125 66.667 0.00 0.00 46.87 4.61
283 289 3.818773 CACCCGACTGTAAAATGTTTCCT 59.181 43.478 0.00 0.00 0.00 3.36
351 357 3.936453 CGAGAGCTGTAGACTGTAGAGTT 59.064 47.826 0.00 0.00 30.16 3.01
352 358 4.201773 CGAGAGCTGTAGACTGTAGAGTTG 60.202 50.000 0.00 0.00 30.16 3.16
353 366 4.658063 AGAGCTGTAGACTGTAGAGTTGT 58.342 43.478 0.00 0.00 30.16 3.32
455 469 9.598517 GATCCAGTGATCTATATTCATTTCTCC 57.401 37.037 0.00 0.00 43.44 3.71
456 470 7.606349 TCCAGTGATCTATATTCATTTCTCCG 58.394 38.462 0.00 0.00 0.00 4.63
457 471 7.451566 TCCAGTGATCTATATTCATTTCTCCGA 59.548 37.037 0.00 0.00 0.00 4.55
458 472 7.543868 CCAGTGATCTATATTCATTTCTCCGAC 59.456 40.741 0.00 0.00 0.00 4.79
459 473 8.084684 CAGTGATCTATATTCATTTCTCCGACA 58.915 37.037 0.00 0.00 0.00 4.35
460 474 8.642432 AGTGATCTATATTCATTTCTCCGACAA 58.358 33.333 0.00 0.00 0.00 3.18
461 475 9.429359 GTGATCTATATTCATTTCTCCGACAAT 57.571 33.333 0.00 0.00 0.00 2.71
474 488 9.799106 ATTTCTCCGACAATATATCCATTTTCT 57.201 29.630 0.00 0.00 0.00 2.52
492 506 7.538678 CCATTTTCTCGACAAGTATTTTTGGAG 59.461 37.037 0.00 0.00 32.32 3.86
494 508 5.477607 TCTCGACAAGTATTTTTGGAGGA 57.522 39.130 0.00 0.00 32.32 3.71
502 516 6.045106 ACAAGTATTTTTGGAGGAAGGGAGTA 59.955 38.462 0.00 0.00 32.32 2.59
503 517 6.910259 AGTATTTTTGGAGGAAGGGAGTAT 57.090 37.500 0.00 0.00 0.00 2.12
504 518 6.901300 AGTATTTTTGGAGGAAGGGAGTATC 58.099 40.000 0.00 0.00 0.00 2.24
505 519 5.796502 ATTTTTGGAGGAAGGGAGTATCA 57.203 39.130 0.00 0.00 36.25 2.15
506 520 4.844349 TTTTGGAGGAAGGGAGTATCAG 57.156 45.455 0.00 0.00 36.25 2.90
507 521 3.491766 TTGGAGGAAGGGAGTATCAGT 57.508 47.619 0.00 0.00 36.25 3.41
508 522 3.491766 TGGAGGAAGGGAGTATCAGTT 57.508 47.619 0.00 0.00 36.25 3.16
509 523 3.803340 TGGAGGAAGGGAGTATCAGTTT 58.197 45.455 0.00 0.00 36.25 2.66
510 524 4.955335 TGGAGGAAGGGAGTATCAGTTTA 58.045 43.478 0.00 0.00 36.25 2.01
511 525 4.962995 TGGAGGAAGGGAGTATCAGTTTAG 59.037 45.833 0.00 0.00 36.25 1.85
512 526 4.963628 GGAGGAAGGGAGTATCAGTTTAGT 59.036 45.833 0.00 0.00 36.25 2.24
513 527 5.425862 GGAGGAAGGGAGTATCAGTTTAGTT 59.574 44.000 0.00 0.00 36.25 2.24
514 528 6.070136 GGAGGAAGGGAGTATCAGTTTAGTTT 60.070 42.308 0.00 0.00 36.25 2.66
515 529 7.125356 GGAGGAAGGGAGTATCAGTTTAGTTTA 59.875 40.741 0.00 0.00 36.25 2.01
516 530 7.849160 AGGAAGGGAGTATCAGTTTAGTTTAC 58.151 38.462 0.00 0.00 36.25 2.01
517 531 7.456902 AGGAAGGGAGTATCAGTTTAGTTTACA 59.543 37.037 0.00 0.00 36.25 2.41
518 532 7.764901 GGAAGGGAGTATCAGTTTAGTTTACAG 59.235 40.741 0.00 0.00 36.25 2.74
519 533 8.431910 AAGGGAGTATCAGTTTAGTTTACAGA 57.568 34.615 0.00 0.00 36.25 3.41
520 534 8.068892 AGGGAGTATCAGTTTAGTTTACAGAG 57.931 38.462 0.00 0.00 36.25 3.35
521 535 7.124448 AGGGAGTATCAGTTTAGTTTACAGAGG 59.876 40.741 0.00 0.00 36.25 3.69
522 536 7.266400 GGAGTATCAGTTTAGTTTACAGAGGG 58.734 42.308 0.00 0.00 36.25 4.30
523 537 7.123847 GGAGTATCAGTTTAGTTTACAGAGGGA 59.876 40.741 0.00 0.00 36.25 4.20
524 538 8.068892 AGTATCAGTTTAGTTTACAGAGGGAG 57.931 38.462 0.00 0.00 0.00 4.30
525 539 6.936968 ATCAGTTTAGTTTACAGAGGGAGT 57.063 37.500 0.00 0.00 0.00 3.85
593 615 3.052036 TCTCTGCGCAAAAATTCAAAGC 58.948 40.909 13.05 0.00 0.00 3.51
616 638 4.440112 CCTGAAGTAGTGTGATGCATCGTA 60.440 45.833 21.34 10.18 0.00 3.43
646 668 0.458669 GAGTTAGTGCGGATCCGGAA 59.541 55.000 33.98 16.24 42.21 4.30
688 710 2.166459 GGGCAGCAGTTTTAATTCTCCC 59.834 50.000 0.00 0.00 0.00 4.30
700 722 2.938956 ATTCTCCCGGGATTCATGAC 57.061 50.000 27.07 0.00 0.00 3.06
800 822 1.083489 GGCAATCGTGACAATTCCGA 58.917 50.000 0.00 0.00 30.49 4.55
842 865 4.778143 GACGCACGCATCCCCCTT 62.778 66.667 0.00 0.00 0.00 3.95
843 866 4.778143 ACGCACGCATCCCCCTTC 62.778 66.667 0.00 0.00 0.00 3.46
922 945 1.305887 CAACCTCCGTACCCTCCCT 60.306 63.158 0.00 0.00 0.00 4.20
923 946 1.001376 AACCTCCGTACCCTCCCTC 59.999 63.158 0.00 0.00 0.00 4.30
924 947 2.123382 CCTCCGTACCCTCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
925 948 2.123382 CTCCGTACCCTCCCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
1123 1150 0.263468 GTAAGCCTCCTCCTCCTCCT 59.737 60.000 0.00 0.00 0.00 3.69
1124 1151 0.558712 TAAGCCTCCTCCTCCTCCTC 59.441 60.000 0.00 0.00 0.00 3.71
1125 1152 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1126 1153 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1127 1154 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1128 1155 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1129 1156 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1130 1157 2.328589 CCTCCTCCTCCTCCTCCCA 61.329 68.421 0.00 0.00 0.00 4.37
1131 1158 1.232792 CTCCTCCTCCTCCTCCCAG 59.767 68.421 0.00 0.00 0.00 4.45
1132 1159 2.285180 CCTCCTCCTCCTCCCAGG 59.715 72.222 0.00 0.00 36.46 4.45
1133 1160 2.445654 CTCCTCCTCCTCCCAGGC 60.446 72.222 0.00 0.00 34.61 4.85
1168 1195 1.447314 CCTCCACGCCGTAAAGGAC 60.447 63.158 10.67 0.00 45.00 3.85
1198 1225 2.030562 CGGTCTGGCGTGGTTTCT 59.969 61.111 0.00 0.00 0.00 2.52
1231 1258 2.996330 CGGATTTGGGGGAAGGGCT 61.996 63.158 0.00 0.00 0.00 5.19
1232 1259 1.075970 GGATTTGGGGGAAGGGCTC 60.076 63.158 0.00 0.00 0.00 4.70
1268 1296 1.200020 GAGAGTGGATTTGGGCGTTTG 59.800 52.381 0.00 0.00 0.00 2.93
1269 1297 0.388520 GAGTGGATTTGGGCGTTTGC 60.389 55.000 0.00 0.00 41.71 3.68
1301 1329 7.027760 GGATTCATCGAGTGTATTCGCTAATA 58.972 38.462 0.00 0.00 40.29 0.98
1356 1389 4.852697 AGGAAATAAGAAACACTCCCTCCT 59.147 41.667 0.00 0.00 0.00 3.69
1363 1396 2.938956 AACACTCCCTCCTTTCACAG 57.061 50.000 0.00 0.00 0.00 3.66
1382 1415 6.351711 TCACAGATATAAAGATGCTGCAACT 58.648 36.000 6.36 6.49 0.00 3.16
1385 1418 7.642978 CACAGATATAAAGATGCTGCAACTTTC 59.357 37.037 32.12 21.66 37.56 2.62
1391 1424 6.594284 AAAGATGCTGCAACTTTCTTTTTC 57.406 33.333 26.03 8.03 32.44 2.29
1398 1431 5.750067 GCTGCAACTTTCTTTTTCTGAATCA 59.250 36.000 0.00 0.00 0.00 2.57
1403 1436 7.650903 GCAACTTTCTTTTTCTGAATCAGATGT 59.349 33.333 14.31 0.00 40.39 3.06
1453 1486 5.947228 TTTCACTCATTTCAGTCCACATC 57.053 39.130 0.00 0.00 0.00 3.06
1498 1531 8.407064 TCAAAACGTTTTATACTTGTGAATGGT 58.593 29.630 24.79 0.00 0.00 3.55
1505 1538 2.568623 ACTTGTGAATGGTGGGAGTC 57.431 50.000 0.00 0.00 0.00 3.36
1506 1539 1.073923 ACTTGTGAATGGTGGGAGTCC 59.926 52.381 0.00 0.00 0.00 3.85
1507 1540 1.073763 CTTGTGAATGGTGGGAGTCCA 59.926 52.381 12.30 0.00 41.58 4.02
1885 1958 7.658525 TCCATGTGCTTGGTATCAATATTTT 57.341 32.000 0.00 0.00 38.01 1.82
1893 1978 6.142798 GCTTGGTATCAATATTTTCATGTGCG 59.857 38.462 0.00 0.00 31.75 5.34
1901 1986 1.890876 TTTTCATGTGCGCTACCAGT 58.109 45.000 9.73 0.00 0.00 4.00
2295 2380 5.482175 ACTTATCAGCTACATATCCCTCCAC 59.518 44.000 0.00 0.00 0.00 4.02
2367 2452 5.464057 CCCAAAACCCGTTGAAAATTTCTAC 59.536 40.000 9.64 9.64 33.08 2.59
2405 2490 6.018832 CCATTGTGTTGTTGAGAAATTTGTCC 60.019 38.462 12.39 0.00 0.00 4.02
2514 2704 7.810282 CCCTGTTTAGATATCAAGTACTCATCG 59.190 40.741 5.32 0.00 0.00 3.84
2600 2790 7.228507 TGGATATGTTAACTTCATGGGATTTCG 59.771 37.037 7.22 0.00 0.00 3.46
2620 2810 8.791327 ATTTCGCAATATCACATGTCCATATA 57.209 30.769 0.00 0.00 0.00 0.86
2621 2811 8.791327 TTTCGCAATATCACATGTCCATATAT 57.209 30.769 0.00 0.00 0.00 0.86
2667 2857 3.192633 AGCGCGGGAGAACAAATAAAAAT 59.807 39.130 8.83 0.00 0.00 1.82
2791 2981 1.698532 CTCATGAGGAAGGCTGGCTAT 59.301 52.381 15.38 0.00 0.00 2.97
2806 2996 2.162681 GGCTATAATGGCACCATCACC 58.837 52.381 1.88 0.00 35.31 4.02
2980 3170 8.756486 TTATCTGTACTGTAGCAGGTAATACA 57.244 34.615 13.95 0.43 34.51 2.29
2982 3172 6.860080 TCTGTACTGTAGCAGGTAATACAAC 58.140 40.000 13.59 0.00 35.51 3.32
2983 3173 6.662234 TCTGTACTGTAGCAGGTAATACAACT 59.338 38.462 13.59 0.00 35.51 3.16
2984 3174 7.830697 TCTGTACTGTAGCAGGTAATACAACTA 59.169 37.037 13.59 0.00 35.51 2.24
2985 3175 8.529424 TGTACTGTAGCAGGTAATACAACTAT 57.471 34.615 0.00 0.00 35.51 2.12
3027 3218 4.917415 GGAATTGGTGTGAGAATTTGTTCG 59.083 41.667 0.00 0.00 0.00 3.95
3245 3439 8.997621 TGATACCAGTAATCTTGTCTTGTTAC 57.002 34.615 0.00 0.00 0.00 2.50
3246 3440 8.812972 TGATACCAGTAATCTTGTCTTGTTACT 58.187 33.333 0.00 0.00 37.75 2.24
3294 3488 9.463443 GTTAGTCAAAAGCTCAAACATAACAAT 57.537 29.630 0.00 0.00 0.00 2.71
3300 3494 9.532697 CAAAAGCTCAAACATAACAATTATTGC 57.467 29.630 4.68 0.00 0.00 3.56
3359 3553 2.618241 GTTGTGACCAACTGAAGCATGA 59.382 45.455 0.00 0.00 46.07 3.07
3487 3681 9.352784 GCATTGTGTAGAACAGCAAATTATTTA 57.647 29.630 0.00 0.00 40.74 1.40
3511 3705 9.866655 TTATGCTGGAAAGGAATTTATCATAGT 57.133 29.630 0.00 0.00 0.00 2.12
3543 3737 9.713713 GGAATCTCTAAAAAGACATATACTCCC 57.286 37.037 0.00 0.00 0.00 4.30
3546 3740 8.480133 TCTCTAAAAAGACATATACTCCCTCC 57.520 38.462 0.00 0.00 0.00 4.30
3547 3741 7.230913 TCTCTAAAAAGACATATACTCCCTCCG 59.769 40.741 0.00 0.00 0.00 4.63
3548 3742 5.952347 AAAAAGACATATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
3549 3743 5.532664 AAAAGACATATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
3550 3744 3.157750 AGACATATACTCCCTCCGTCC 57.842 52.381 0.00 0.00 0.00 4.79
3551 3745 2.169330 GACATATACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
3552 3746 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
3553 3747 2.090943 ACATATACTCCCTCCGTCCCAA 60.091 50.000 0.00 0.00 0.00 4.12
3554 3748 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3555 3749 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3556 3750 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3557 3751 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3558 3752 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3559 3753 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3560 3754 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3561 3755 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3562 3756 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3563 3757 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3564 3758 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3565 3759 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3566 3760 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3567 3761 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3568 3762 5.935789 TCCGTCCCAAAATAAGTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
3569 3763 5.391629 CCGTCCCAAAATAAGTGTCTTAAGC 60.392 44.000 0.00 0.00 0.00 3.09
3570 3764 5.411669 CGTCCCAAAATAAGTGTCTTAAGCT 59.588 40.000 0.00 0.00 0.00 3.74
3571 3765 6.072673 CGTCCCAAAATAAGTGTCTTAAGCTT 60.073 38.462 3.48 3.48 0.00 3.74
3572 3766 7.118680 CGTCCCAAAATAAGTGTCTTAAGCTTA 59.881 37.037 0.86 0.86 0.00 3.09
3573 3767 8.451748 GTCCCAAAATAAGTGTCTTAAGCTTAG 58.548 37.037 6.24 1.77 0.00 2.18
3574 3768 8.161425 TCCCAAAATAAGTGTCTTAAGCTTAGT 58.839 33.333 6.24 0.00 0.00 2.24
3575 3769 9.444600 CCCAAAATAAGTGTCTTAAGCTTAGTA 57.555 33.333 6.24 0.00 0.00 1.82
3579 3773 9.872721 AAATAAGTGTCTTAAGCTTAGTACTCC 57.127 33.333 16.64 10.07 0.00 3.85
3580 3774 5.918426 AGTGTCTTAAGCTTAGTACTCCC 57.082 43.478 16.64 8.38 0.00 4.30
3581 3775 5.581975 AGTGTCTTAAGCTTAGTACTCCCT 58.418 41.667 16.64 9.84 0.00 4.20
3582 3776 5.653330 AGTGTCTTAAGCTTAGTACTCCCTC 59.347 44.000 16.64 0.00 0.00 4.30
3583 3777 4.954826 TGTCTTAAGCTTAGTACTCCCTCC 59.045 45.833 16.64 0.00 0.00 4.30
3584 3778 4.036616 GTCTTAAGCTTAGTACTCCCTCCG 59.963 50.000 6.24 0.00 0.00 4.63
3585 3779 2.528673 AAGCTTAGTACTCCCTCCGT 57.471 50.000 0.00 0.00 0.00 4.69
3586 3780 2.055684 AGCTTAGTACTCCCTCCGTC 57.944 55.000 0.00 0.00 0.00 4.79
3587 3781 1.031235 GCTTAGTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
3588 3782 1.307097 CTTAGTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
3589 3783 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
3590 3784 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3591 3785 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3592 3786 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3593 3787 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3594 3788 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3595 3789 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3596 3790 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3597 3791 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3598 3792 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3599 3793 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3600 3794 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3601 3795 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3602 3796 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3603 3797 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
3604 3798 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
3605 3799 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
3606 3800 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
3607 3801 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
3608 3802 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
3609 3803 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
3610 3804 6.155565 TCCGGAAATACTTGTCCTAGAAATGA 59.844 38.462 0.00 0.00 0.00 2.57
3611 3805 6.992715 CCGGAAATACTTGTCCTAGAAATGAT 59.007 38.462 0.00 0.00 0.00 2.45
3612 3806 7.499232 CCGGAAATACTTGTCCTAGAAATGATT 59.501 37.037 0.00 0.00 0.00 2.57
3613 3807 8.338259 CGGAAATACTTGTCCTAGAAATGATTG 58.662 37.037 0.00 0.00 0.00 2.67
3614 3808 9.396022 GGAAATACTTGTCCTAGAAATGATTGA 57.604 33.333 0.00 0.00 0.00 2.57
3620 3814 9.300681 ACTTGTCCTAGAAATGATTGAAAATGA 57.699 29.630 0.00 0.00 0.00 2.57
3674 3868 7.833285 ACAACCATTTGTAGGACAAGTATTT 57.167 32.000 0.00 0.00 44.53 1.40
3675 3869 8.245195 ACAACCATTTGTAGGACAAGTATTTT 57.755 30.769 0.00 0.00 44.53 1.82
3676 3870 8.357402 ACAACCATTTGTAGGACAAGTATTTTC 58.643 33.333 0.00 0.00 44.53 2.29
3677 3871 8.356657 CAACCATTTGTAGGACAAGTATTTTCA 58.643 33.333 0.00 0.00 39.53 2.69
3678 3872 8.110860 ACCATTTGTAGGACAAGTATTTTCAG 57.889 34.615 0.00 0.00 39.53 3.02
3679 3873 7.176690 ACCATTTGTAGGACAAGTATTTTCAGG 59.823 37.037 0.00 0.00 39.53 3.86
3680 3874 6.569179 TTTGTAGGACAAGTATTTTCAGGC 57.431 37.500 0.00 0.00 39.53 4.85
3681 3875 4.250464 TGTAGGACAAGTATTTTCAGGCG 58.750 43.478 0.00 0.00 0.00 5.52
3682 3876 2.711542 AGGACAAGTATTTTCAGGCGG 58.288 47.619 0.00 0.00 0.00 6.13
3683 3877 2.304761 AGGACAAGTATTTTCAGGCGGA 59.695 45.455 0.00 0.00 0.00 5.54
3684 3878 2.678336 GGACAAGTATTTTCAGGCGGAG 59.322 50.000 0.00 0.00 0.00 4.63
3685 3879 2.678336 GACAAGTATTTTCAGGCGGAGG 59.322 50.000 0.00 0.00 0.00 4.30
3686 3880 2.017049 CAAGTATTTTCAGGCGGAGGG 58.983 52.381 0.00 0.00 0.00 4.30
3687 3881 1.580059 AGTATTTTCAGGCGGAGGGA 58.420 50.000 0.00 0.00 0.00 4.20
3688 3882 1.913419 AGTATTTTCAGGCGGAGGGAA 59.087 47.619 0.00 0.00 0.00 3.97
3689 3883 2.014857 GTATTTTCAGGCGGAGGGAAC 58.985 52.381 0.00 0.00 0.00 3.62
3691 3885 0.476771 TTTTCAGGCGGAGGGAACTT 59.523 50.000 0.00 0.00 44.43 2.66
3692 3886 0.476771 TTTCAGGCGGAGGGAACTTT 59.523 50.000 0.00 0.00 44.43 2.66
3693 3887 1.354101 TTCAGGCGGAGGGAACTTTA 58.646 50.000 0.00 0.00 44.43 1.85
3694 3888 1.580059 TCAGGCGGAGGGAACTTTAT 58.420 50.000 0.00 0.00 44.43 1.40
3695 3889 2.754465 TCAGGCGGAGGGAACTTTATA 58.246 47.619 0.00 0.00 44.43 0.98
3696 3890 2.433239 TCAGGCGGAGGGAACTTTATAC 59.567 50.000 0.00 0.00 44.43 1.47
3697 3891 2.434702 CAGGCGGAGGGAACTTTATACT 59.565 50.000 0.00 0.00 44.43 2.12
3698 3892 3.640029 CAGGCGGAGGGAACTTTATACTA 59.360 47.826 0.00 0.00 44.43 1.82
3699 3893 3.896272 AGGCGGAGGGAACTTTATACTAG 59.104 47.826 0.00 0.00 44.43 2.57
3700 3894 3.893813 GGCGGAGGGAACTTTATACTAGA 59.106 47.826 0.00 0.00 44.43 2.43
3701 3895 4.022155 GGCGGAGGGAACTTTATACTAGAG 60.022 50.000 0.00 0.00 44.43 2.43
3702 3896 4.583907 GCGGAGGGAACTTTATACTAGAGT 59.416 45.833 0.00 0.00 44.43 3.24
3703 3897 5.068855 GCGGAGGGAACTTTATACTAGAGTT 59.931 44.000 0.00 0.00 44.43 3.01
3704 3898 6.264067 GCGGAGGGAACTTTATACTAGAGTTA 59.736 42.308 0.00 0.00 44.43 2.24
3705 3899 7.201857 GCGGAGGGAACTTTATACTAGAGTTAA 60.202 40.741 0.00 0.00 44.43 2.01
3706 3900 8.858094 CGGAGGGAACTTTATACTAGAGTTAAT 58.142 37.037 0.00 0.00 44.43 1.40
3721 3915 9.694137 ACTAGAGTTAATACAAAGTTGAGACAC 57.306 33.333 0.00 0.00 0.00 3.67
3722 3916 9.915629 CTAGAGTTAATACAAAGTTGAGACACT 57.084 33.333 0.00 0.00 0.00 3.55
3731 3925 9.862371 ATACAAAGTTGAGACACTTATGTAGAG 57.138 33.333 0.00 0.00 39.95 2.43
3732 3926 7.952671 ACAAAGTTGAGACACTTATGTAGAGA 58.047 34.615 0.00 0.00 39.95 3.10
3733 3927 7.868415 ACAAAGTTGAGACACTTATGTAGAGAC 59.132 37.037 0.00 0.00 39.95 3.36
3734 3928 6.184580 AGTTGAGACACTTATGTAGAGACG 57.815 41.667 0.00 0.00 39.95 4.18
3735 3929 5.124138 AGTTGAGACACTTATGTAGAGACGG 59.876 44.000 0.00 0.00 39.95 4.79
3736 3930 4.840271 TGAGACACTTATGTAGAGACGGA 58.160 43.478 0.00 0.00 39.95 4.69
3737 3931 4.876679 TGAGACACTTATGTAGAGACGGAG 59.123 45.833 0.00 0.00 39.95 4.63
3738 3932 4.200874 AGACACTTATGTAGAGACGGAGG 58.799 47.826 0.00 0.00 39.95 4.30
3739 3933 3.288964 ACACTTATGTAGAGACGGAGGG 58.711 50.000 0.00 0.00 37.26 4.30
3740 3934 3.053842 ACACTTATGTAGAGACGGAGGGA 60.054 47.826 0.00 0.00 37.26 4.20
3741 3935 3.566322 CACTTATGTAGAGACGGAGGGAG 59.434 52.174 0.00 0.00 0.00 4.30
3742 3936 3.202595 ACTTATGTAGAGACGGAGGGAGT 59.797 47.826 0.00 0.00 0.00 3.85
3743 3937 4.411540 ACTTATGTAGAGACGGAGGGAGTA 59.588 45.833 0.00 0.00 0.00 2.59
3744 3938 5.073417 ACTTATGTAGAGACGGAGGGAGTAT 59.927 44.000 0.00 0.00 0.00 2.12
3745 3939 3.947612 TGTAGAGACGGAGGGAGTATT 57.052 47.619 0.00 0.00 0.00 1.89
3746 3940 4.246712 TGTAGAGACGGAGGGAGTATTT 57.753 45.455 0.00 0.00 0.00 1.40
3747 3941 5.378230 TGTAGAGACGGAGGGAGTATTTA 57.622 43.478 0.00 0.00 0.00 1.40
3748 3942 5.374921 TGTAGAGACGGAGGGAGTATTTAG 58.625 45.833 0.00 0.00 0.00 1.85
3749 3943 3.834938 AGAGACGGAGGGAGTATTTAGG 58.165 50.000 0.00 0.00 0.00 2.69
3750 3944 3.462579 AGAGACGGAGGGAGTATTTAGGA 59.537 47.826 0.00 0.00 0.00 2.94
3751 3945 4.079327 AGAGACGGAGGGAGTATTTAGGAA 60.079 45.833 0.00 0.00 0.00 3.36
3752 3946 4.216708 AGACGGAGGGAGTATTTAGGAAG 58.783 47.826 0.00 0.00 0.00 3.46
3753 3947 3.306613 ACGGAGGGAGTATTTAGGAAGG 58.693 50.000 0.00 0.00 0.00 3.46
3754 3948 2.633481 CGGAGGGAGTATTTAGGAAGGG 59.367 54.545 0.00 0.00 0.00 3.95
3755 3949 3.693359 CGGAGGGAGTATTTAGGAAGGGA 60.693 52.174 0.00 0.00 0.00 4.20
3756 3950 3.904965 GGAGGGAGTATTTAGGAAGGGAG 59.095 52.174 0.00 0.00 0.00 4.30
3757 3951 3.904965 GAGGGAGTATTTAGGAAGGGAGG 59.095 52.174 0.00 0.00 0.00 4.30
3758 3952 2.980379 GGGAGTATTTAGGAAGGGAGGG 59.020 54.545 0.00 0.00 0.00 4.30
3759 3953 3.376103 GGGAGTATTTAGGAAGGGAGGGA 60.376 52.174 0.00 0.00 0.00 4.20
3760 3954 3.904965 GGAGTATTTAGGAAGGGAGGGAG 59.095 52.174 0.00 0.00 0.00 4.30
3761 3955 4.558715 GAGTATTTAGGAAGGGAGGGAGT 58.441 47.826 0.00 0.00 0.00 3.85
3762 3956 4.299485 AGTATTTAGGAAGGGAGGGAGTG 58.701 47.826 0.00 0.00 0.00 3.51
3763 3957 1.286248 TTTAGGAAGGGAGGGAGTGC 58.714 55.000 0.00 0.00 0.00 4.40
3764 3958 0.417841 TTAGGAAGGGAGGGAGTGCT 59.582 55.000 0.00 0.00 0.00 4.40
3765 3959 0.417841 TAGGAAGGGAGGGAGTGCTT 59.582 55.000 0.00 0.00 0.00 3.91
3766 3960 1.204113 AGGAAGGGAGGGAGTGCTTG 61.204 60.000 0.00 0.00 0.00 4.01
3767 3961 1.377856 GAAGGGAGGGAGTGCTTGC 60.378 63.158 0.00 0.00 0.00 4.01
3768 3962 2.129555 GAAGGGAGGGAGTGCTTGCA 62.130 60.000 0.00 0.00 0.00 4.08
3769 3963 1.719063 AAGGGAGGGAGTGCTTGCAA 61.719 55.000 0.00 0.00 0.00 4.08
3770 3964 1.676967 GGGAGGGAGTGCTTGCAAG 60.677 63.158 22.44 22.44 0.00 4.01
3783 3977 2.821546 CTTGCAAGCAATCATGGATGG 58.178 47.619 14.65 0.00 35.20 3.51
3784 3978 1.116308 TGCAAGCAATCATGGATGGG 58.884 50.000 0.00 0.00 0.00 4.00
3785 3979 0.249741 GCAAGCAATCATGGATGGGC 60.250 55.000 0.00 0.00 0.00 5.36
3786 3980 1.116308 CAAGCAATCATGGATGGGCA 58.884 50.000 0.00 0.00 0.00 5.36
3787 3981 1.068588 CAAGCAATCATGGATGGGCAG 59.931 52.381 0.00 0.00 0.00 4.85
3788 3982 0.260816 AGCAATCATGGATGGGCAGT 59.739 50.000 0.00 0.00 0.00 4.40
3789 3983 0.672342 GCAATCATGGATGGGCAGTC 59.328 55.000 0.00 0.00 0.00 3.51
3790 3984 2.025344 GCAATCATGGATGGGCAGTCA 61.025 52.381 0.00 0.00 0.00 3.41
3791 3985 1.954382 CAATCATGGATGGGCAGTCAG 59.046 52.381 0.00 0.00 0.00 3.51
3792 3986 1.219773 ATCATGGATGGGCAGTCAGT 58.780 50.000 0.00 0.00 0.00 3.41
3793 3987 0.543277 TCATGGATGGGCAGTCAGTC 59.457 55.000 0.00 0.00 0.00 3.51
3794 3988 0.253894 CATGGATGGGCAGTCAGTCA 59.746 55.000 0.00 0.00 0.00 3.41
3795 3989 0.545171 ATGGATGGGCAGTCAGTCAG 59.455 55.000 0.00 0.00 0.00 3.51
3796 3990 1.222936 GGATGGGCAGTCAGTCAGG 59.777 63.158 0.00 0.00 0.00 3.86
3797 3991 1.557269 GGATGGGCAGTCAGTCAGGT 61.557 60.000 0.00 0.00 0.00 4.00
3798 3992 0.326264 GATGGGCAGTCAGTCAGGTT 59.674 55.000 0.00 0.00 0.00 3.50
3799 3993 1.555075 GATGGGCAGTCAGTCAGGTTA 59.445 52.381 0.00 0.00 0.00 2.85
3800 3994 0.685097 TGGGCAGTCAGTCAGGTTAC 59.315 55.000 0.00 0.00 0.00 2.50
3801 3995 0.036294 GGGCAGTCAGTCAGGTTACC 60.036 60.000 0.00 0.00 0.00 2.85
3802 3996 0.977395 GGCAGTCAGTCAGGTTACCT 59.023 55.000 0.00 0.00 0.00 3.08
3803 3997 1.348036 GGCAGTCAGTCAGGTTACCTT 59.652 52.381 0.00 0.00 0.00 3.50
3804 3998 2.417719 GCAGTCAGTCAGGTTACCTTG 58.582 52.381 0.00 0.00 0.00 3.61
3805 3999 2.417719 CAGTCAGTCAGGTTACCTTGC 58.582 52.381 0.00 0.00 0.00 4.01
3806 4000 1.000955 AGTCAGTCAGGTTACCTTGCG 59.999 52.381 0.00 0.00 0.00 4.85
3807 4001 1.000506 GTCAGTCAGGTTACCTTGCGA 59.999 52.381 0.00 0.00 0.00 5.10
3808 4002 1.000506 TCAGTCAGGTTACCTTGCGAC 59.999 52.381 0.00 6.72 0.00 5.19
3809 4003 1.045407 AGTCAGGTTACCTTGCGACA 58.955 50.000 18.48 0.00 29.75 4.35
3810 4004 1.414919 AGTCAGGTTACCTTGCGACAA 59.585 47.619 18.48 0.00 29.75 3.18
3811 4005 1.529865 GTCAGGTTACCTTGCGACAAC 59.470 52.381 13.40 0.00 28.44 3.32
3812 4006 0.511221 CAGGTTACCTTGCGACAACG 59.489 55.000 0.00 0.00 42.93 4.10
3813 4007 0.601841 AGGTTACCTTGCGACAACGG 60.602 55.000 0.00 0.00 40.15 4.44
3814 4008 1.205820 GTTACCTTGCGACAACGGC 59.794 57.895 0.00 0.00 40.15 5.68
3815 4009 1.070105 TTACCTTGCGACAACGGCT 59.930 52.632 0.00 0.00 40.15 5.52
3816 4010 0.947180 TTACCTTGCGACAACGGCTC 60.947 55.000 0.00 0.00 40.15 4.70
3817 4011 1.812686 TACCTTGCGACAACGGCTCT 61.813 55.000 0.00 0.00 40.15 4.09
3818 4012 2.383527 CCTTGCGACAACGGCTCTC 61.384 63.158 0.00 0.00 40.15 3.20
3819 4013 2.720758 CTTGCGACAACGGCTCTCG 61.721 63.158 0.00 0.00 45.88 4.04
3828 4022 4.421479 CGGCTCTCGTGCGGAGTT 62.421 66.667 4.72 0.00 43.60 3.01
3829 4023 2.811317 GGCTCTCGTGCGGAGTTG 60.811 66.667 4.72 1.68 43.60 3.16
3830 4024 2.049063 GCTCTCGTGCGGAGTTGT 60.049 61.111 4.72 0.00 43.60 3.32
3831 4025 1.211969 GCTCTCGTGCGGAGTTGTA 59.788 57.895 4.72 0.00 43.60 2.41
3832 4026 0.179134 GCTCTCGTGCGGAGTTGTAT 60.179 55.000 4.72 0.00 43.60 2.29
3833 4027 1.828832 CTCTCGTGCGGAGTTGTATC 58.171 55.000 4.72 0.00 43.60 2.24
3834 4028 1.132453 CTCTCGTGCGGAGTTGTATCA 59.868 52.381 4.72 0.00 43.60 2.15
3835 4029 1.542472 TCTCGTGCGGAGTTGTATCAA 59.458 47.619 4.72 0.00 43.60 2.57
3836 4030 2.029739 TCTCGTGCGGAGTTGTATCAAA 60.030 45.455 4.72 0.00 43.60 2.69
3837 4031 2.930040 CTCGTGCGGAGTTGTATCAAAT 59.070 45.455 0.00 0.00 38.02 2.32
3838 4032 2.670905 TCGTGCGGAGTTGTATCAAATG 59.329 45.455 0.00 0.00 0.00 2.32
3839 4033 2.223021 CGTGCGGAGTTGTATCAAATGG 60.223 50.000 0.00 0.00 0.00 3.16
3840 4034 2.097466 GTGCGGAGTTGTATCAAATGGG 59.903 50.000 0.00 0.00 0.00 4.00
3841 4035 2.290641 TGCGGAGTTGTATCAAATGGGT 60.291 45.455 0.00 0.00 0.00 4.51
3842 4036 3.055021 TGCGGAGTTGTATCAAATGGGTA 60.055 43.478 0.00 0.00 0.00 3.69
3843 4037 3.942748 GCGGAGTTGTATCAAATGGGTAA 59.057 43.478 0.00 0.00 0.00 2.85
3844 4038 4.578928 GCGGAGTTGTATCAAATGGGTAAT 59.421 41.667 0.00 0.00 0.00 1.89
3845 4039 5.067283 GCGGAGTTGTATCAAATGGGTAATT 59.933 40.000 0.00 0.00 0.00 1.40
3846 4040 6.725246 CGGAGTTGTATCAAATGGGTAATTC 58.275 40.000 0.00 0.00 0.00 2.17
3847 4041 6.238648 CGGAGTTGTATCAAATGGGTAATTCC 60.239 42.308 0.00 0.00 0.00 3.01
3858 4052 1.173913 GGTAATTCCCACACAGGTGC 58.826 55.000 0.00 0.00 43.88 5.01
3859 4053 1.173913 GTAATTCCCACACAGGTGCC 58.826 55.000 0.00 0.00 43.88 5.01
3860 4054 1.072266 TAATTCCCACACAGGTGCCT 58.928 50.000 0.00 0.00 43.88 4.75
3861 4055 0.188342 AATTCCCACACAGGTGCCTT 59.812 50.000 0.00 0.00 43.88 4.35
3862 4056 0.540365 ATTCCCACACAGGTGCCTTG 60.540 55.000 0.00 0.00 43.88 3.61
3863 4057 2.598394 CCCACACAGGTGCCTTGG 60.598 66.667 0.00 0.16 43.88 3.61
3864 4058 2.515398 CCACACAGGTGCCTTGGA 59.485 61.111 0.00 0.00 43.88 3.53
3865 4059 1.075482 CCACACAGGTGCCTTGGAT 59.925 57.895 0.00 0.00 43.88 3.41
3866 4060 1.246056 CCACACAGGTGCCTTGGATG 61.246 60.000 0.00 0.00 43.88 3.51
3867 4061 1.604593 ACACAGGTGCCTTGGATGC 60.605 57.895 0.00 0.00 0.00 3.91
3868 4062 2.360350 ACAGGTGCCTTGGATGCG 60.360 61.111 0.00 0.00 0.00 4.73
3869 4063 3.136123 CAGGTGCCTTGGATGCGG 61.136 66.667 0.00 0.00 0.00 5.69
3870 4064 3.329889 AGGTGCCTTGGATGCGGA 61.330 61.111 0.00 0.00 0.00 5.54
3871 4065 2.361104 GGTGCCTTGGATGCGGAA 60.361 61.111 0.00 0.00 0.00 4.30
3872 4066 1.976474 GGTGCCTTGGATGCGGAAA 60.976 57.895 0.00 0.00 0.00 3.13
3873 4067 1.508088 GTGCCTTGGATGCGGAAAG 59.492 57.895 0.00 0.00 0.00 2.62
3874 4068 1.074775 TGCCTTGGATGCGGAAAGT 59.925 52.632 0.00 0.00 0.00 2.66
3875 4069 0.960364 TGCCTTGGATGCGGAAAGTC 60.960 55.000 0.00 0.00 0.00 3.01
3876 4070 0.678048 GCCTTGGATGCGGAAAGTCT 60.678 55.000 0.00 0.00 0.00 3.24
3877 4071 1.826385 CCTTGGATGCGGAAAGTCTT 58.174 50.000 0.00 0.00 0.00 3.01
3878 4072 2.162681 CCTTGGATGCGGAAAGTCTTT 58.837 47.619 0.00 0.00 0.00 2.52
3879 4073 2.162408 CCTTGGATGCGGAAAGTCTTTC 59.838 50.000 15.78 15.78 38.94 2.62
3880 4074 2.559698 TGGATGCGGAAAGTCTTTCA 57.440 45.000 23.47 7.52 41.43 2.69
3881 4075 2.426522 TGGATGCGGAAAGTCTTTCAG 58.573 47.619 23.47 20.71 41.43 3.02
3882 4076 2.224523 TGGATGCGGAAAGTCTTTCAGT 60.225 45.455 23.47 7.75 41.43 3.41
3883 4077 2.160417 GGATGCGGAAAGTCTTTCAGTG 59.840 50.000 23.47 14.70 41.43 3.66
3884 4078 0.944386 TGCGGAAAGTCTTTCAGTGC 59.056 50.000 23.47 21.91 41.43 4.40
3885 4079 0.238553 GCGGAAAGTCTTTCAGTGCC 59.761 55.000 23.47 8.44 41.43 5.01
3886 4080 1.593196 CGGAAAGTCTTTCAGTGCCA 58.407 50.000 23.47 0.00 41.43 4.92
3887 4081 1.264288 CGGAAAGTCTTTCAGTGCCAC 59.736 52.381 23.47 6.55 41.43 5.01
3888 4082 1.609072 GGAAAGTCTTTCAGTGCCACC 59.391 52.381 23.47 4.05 41.43 4.61
3889 4083 2.576615 GAAAGTCTTTCAGTGCCACCT 58.423 47.619 18.58 0.00 39.45 4.00
3890 4084 3.496160 GGAAAGTCTTTCAGTGCCACCTA 60.496 47.826 23.47 0.00 41.43 3.08
3891 4085 3.409026 AAGTCTTTCAGTGCCACCTAG 57.591 47.619 0.00 0.00 0.00 3.02
3892 4086 2.330216 AGTCTTTCAGTGCCACCTAGT 58.670 47.619 0.00 0.00 0.00 2.57
3893 4087 2.706190 AGTCTTTCAGTGCCACCTAGTT 59.294 45.455 0.00 0.00 0.00 2.24
3894 4088 3.901844 AGTCTTTCAGTGCCACCTAGTTA 59.098 43.478 0.00 0.00 0.00 2.24
3895 4089 4.532521 AGTCTTTCAGTGCCACCTAGTTAT 59.467 41.667 0.00 0.00 0.00 1.89
3896 4090 5.013183 AGTCTTTCAGTGCCACCTAGTTATT 59.987 40.000 0.00 0.00 0.00 1.40
3897 4091 5.351740 GTCTTTCAGTGCCACCTAGTTATTC 59.648 44.000 0.00 0.00 0.00 1.75
3898 4092 4.901197 TTCAGTGCCACCTAGTTATTCA 57.099 40.909 0.00 0.00 0.00 2.57
3899 4093 5.435686 TTCAGTGCCACCTAGTTATTCAT 57.564 39.130 0.00 0.00 0.00 2.57
3900 4094 5.023533 TCAGTGCCACCTAGTTATTCATC 57.976 43.478 0.00 0.00 0.00 2.92
3901 4095 4.469586 TCAGTGCCACCTAGTTATTCATCA 59.530 41.667 0.00 0.00 0.00 3.07
3902 4096 5.130975 TCAGTGCCACCTAGTTATTCATCAT 59.869 40.000 0.00 0.00 0.00 2.45
3903 4097 5.468072 CAGTGCCACCTAGTTATTCATCATC 59.532 44.000 0.00 0.00 0.00 2.92
3904 4098 5.130975 AGTGCCACCTAGTTATTCATCATCA 59.869 40.000 0.00 0.00 0.00 3.07
3905 4099 6.000219 GTGCCACCTAGTTATTCATCATCAT 59.000 40.000 0.00 0.00 0.00 2.45
3906 4100 5.999600 TGCCACCTAGTTATTCATCATCATG 59.000 40.000 0.00 0.00 0.00 3.07
3907 4101 5.413833 GCCACCTAGTTATTCATCATCATGG 59.586 44.000 0.00 0.00 0.00 3.66
3908 4102 6.745190 GCCACCTAGTTATTCATCATCATGGA 60.745 42.308 0.00 0.00 0.00 3.41
3909 4103 6.877855 CCACCTAGTTATTCATCATCATGGAG 59.122 42.308 0.00 0.00 0.00 3.86
3910 4104 7.448420 CACCTAGTTATTCATCATCATGGAGT 58.552 38.462 0.00 0.00 0.00 3.85
3911 4105 8.588472 CACCTAGTTATTCATCATCATGGAGTA 58.412 37.037 0.00 0.00 0.00 2.59
3912 4106 9.331466 ACCTAGTTATTCATCATCATGGAGTAT 57.669 33.333 0.00 0.00 0.00 2.12
3920 4114 8.890410 TTCATCATCATGGAGTATATCAGAGA 57.110 34.615 0.00 0.00 0.00 3.10
3921 4115 9.490083 TTCATCATCATGGAGTATATCAGAGAT 57.510 33.333 0.00 0.00 0.00 2.75
3928 4122 9.759473 TCATGGAGTATATCAGAGATATTGTCA 57.241 33.333 4.98 1.48 0.00 3.58
3929 4123 9.800433 CATGGAGTATATCAGAGATATTGTCAC 57.200 37.037 4.98 0.00 0.00 3.67
3930 4124 8.940397 TGGAGTATATCAGAGATATTGTCACA 57.060 34.615 4.98 0.00 0.00 3.58
3931 4125 9.539194 TGGAGTATATCAGAGATATTGTCACAT 57.461 33.333 4.98 0.00 0.00 3.21
3950 4144 9.406113 TGTCACATTTATATGGATTCAACATCA 57.594 29.630 0.00 0.00 36.01 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 6.166982 AGCTCAAGATATTATACCTTTCGCC 58.833 40.000 0.00 0.00 0.00 5.54
66 68 3.951663 TGCAGTACAGCTCTGACTAGTA 58.048 45.455 11.81 0.00 35.20 1.82
67 69 2.796557 TGCAGTACAGCTCTGACTAGT 58.203 47.619 11.81 0.00 35.20 2.57
172 177 7.412237 GCAGCATCCAAAAATTTAACAAGCTAG 60.412 37.037 0.00 0.00 0.00 3.42
173 178 6.368516 GCAGCATCCAAAAATTTAACAAGCTA 59.631 34.615 0.00 0.00 0.00 3.32
174 179 5.179929 GCAGCATCCAAAAATTTAACAAGCT 59.820 36.000 0.00 0.00 0.00 3.74
184 189 0.390209 GCCACGCAGCATCCAAAAAT 60.390 50.000 0.00 0.00 0.00 1.82
241 247 1.200020 GGCGTTCCCAGATCAAACAAG 59.800 52.381 0.00 0.00 0.00 3.16
283 289 4.024302 CAGCAGGTCGACACGTATCTATAA 60.024 45.833 18.91 0.00 0.00 0.98
351 357 2.436417 GCTCCTCAAATGGTGCTAACA 58.564 47.619 0.00 0.00 41.72 2.41
446 460 9.573166 AAAATGGATATATTGTCGGAGAAATGA 57.427 29.630 0.00 0.00 39.69 2.57
452 466 7.062371 GTCGAGAAAATGGATATATTGTCGGAG 59.938 40.741 4.48 0.00 31.04 4.63
453 467 6.866770 GTCGAGAAAATGGATATATTGTCGGA 59.133 38.462 4.48 0.00 31.04 4.55
454 468 6.645003 TGTCGAGAAAATGGATATATTGTCGG 59.355 38.462 4.48 0.00 31.04 4.79
455 469 7.637709 TGTCGAGAAAATGGATATATTGTCG 57.362 36.000 0.00 0.00 31.04 4.35
456 470 9.046296 ACTTGTCGAGAAAATGGATATATTGTC 57.954 33.333 0.00 0.00 0.00 3.18
457 471 8.964476 ACTTGTCGAGAAAATGGATATATTGT 57.036 30.769 0.00 0.00 0.00 2.71
474 488 5.001232 CCTTCCTCCAAAAATACTTGTCGA 58.999 41.667 0.00 0.00 0.00 4.20
488 502 3.491766 AACTGATACTCCCTTCCTCCA 57.508 47.619 0.00 0.00 0.00 3.86
492 506 7.618137 TGTAAACTAAACTGATACTCCCTTCC 58.382 38.462 0.00 0.00 0.00 3.46
494 508 8.431910 TCTGTAAACTAAACTGATACTCCCTT 57.568 34.615 0.00 0.00 0.00 3.95
502 516 6.936968 ACTCCCTCTGTAAACTAAACTGAT 57.063 37.500 0.00 0.00 0.00 2.90
503 517 6.210185 GGTACTCCCTCTGTAAACTAAACTGA 59.790 42.308 0.00 0.00 0.00 3.41
504 518 6.014840 TGGTACTCCCTCTGTAAACTAAACTG 60.015 42.308 0.00 0.00 0.00 3.16
505 519 6.080009 TGGTACTCCCTCTGTAAACTAAACT 58.920 40.000 0.00 0.00 0.00 2.66
506 520 6.350629 TGGTACTCCCTCTGTAAACTAAAC 57.649 41.667 0.00 0.00 0.00 2.01
507 521 5.046807 GCTGGTACTCCCTCTGTAAACTAAA 60.047 44.000 0.00 0.00 0.00 1.85
508 522 4.465305 GCTGGTACTCCCTCTGTAAACTAA 59.535 45.833 0.00 0.00 0.00 2.24
509 523 4.021916 GCTGGTACTCCCTCTGTAAACTA 58.978 47.826 0.00 0.00 0.00 2.24
510 524 2.832733 GCTGGTACTCCCTCTGTAAACT 59.167 50.000 0.00 0.00 0.00 2.66
511 525 2.832733 AGCTGGTACTCCCTCTGTAAAC 59.167 50.000 0.00 0.00 0.00 2.01
512 526 3.185880 AGCTGGTACTCCCTCTGTAAA 57.814 47.619 0.00 0.00 0.00 2.01
513 527 2.921834 AGCTGGTACTCCCTCTGTAA 57.078 50.000 0.00 0.00 0.00 2.41
514 528 3.120898 TCTAGCTGGTACTCCCTCTGTA 58.879 50.000 0.00 0.00 0.00 2.74
515 529 1.923850 TCTAGCTGGTACTCCCTCTGT 59.076 52.381 0.00 0.00 0.00 3.41
516 530 2.738587 TCTAGCTGGTACTCCCTCTG 57.261 55.000 0.00 0.00 0.00 3.35
517 531 3.983533 ATTCTAGCTGGTACTCCCTCT 57.016 47.619 0.00 0.00 0.00 3.69
518 532 4.162509 ACAAATTCTAGCTGGTACTCCCTC 59.837 45.833 0.00 0.00 0.00 4.30
519 533 4.104831 ACAAATTCTAGCTGGTACTCCCT 58.895 43.478 0.00 0.00 0.00 4.20
520 534 4.489306 ACAAATTCTAGCTGGTACTCCC 57.511 45.455 0.00 0.00 0.00 4.30
521 535 5.051153 GCTACAAATTCTAGCTGGTACTCC 58.949 45.833 0.00 0.00 34.82 3.85
522 536 5.661458 TGCTACAAATTCTAGCTGGTACTC 58.339 41.667 13.53 0.00 37.98 2.59
523 537 5.677319 TGCTACAAATTCTAGCTGGTACT 57.323 39.130 13.53 0.00 37.98 2.73
524 538 6.737254 TTTGCTACAAATTCTAGCTGGTAC 57.263 37.500 13.53 0.00 37.98 3.34
525 539 7.609918 TGATTTTGCTACAAATTCTAGCTGGTA 59.390 33.333 13.53 0.00 37.98 3.25
593 615 2.862536 CGATGCATCACACTACTTCAGG 59.137 50.000 25.70 1.45 0.00 3.86
616 638 2.607635 CGCACTAACTCGCCACATTAAT 59.392 45.455 0.00 0.00 0.00 1.40
646 668 4.142182 CCCATGAAATTTCTGCCACGTTAT 60.142 41.667 18.64 0.00 0.00 1.89
688 710 2.365444 CTTGCGCGTCATGAATCCCG 62.365 60.000 8.43 0.00 0.00 5.14
700 722 2.277247 CGGGTATTTGCTTGCGCG 60.277 61.111 0.00 0.00 39.65 6.86
741 763 2.410469 GGCCTATGCAAGCAAGCG 59.590 61.111 0.00 0.00 40.13 4.68
785 807 3.670625 TCCTTTTCGGAATTGTCACGAT 58.329 40.909 0.00 0.00 39.40 3.73
786 808 3.114668 TCCTTTTCGGAATTGTCACGA 57.885 42.857 0.00 0.00 39.40 4.35
800 822 3.383505 CGTGGGAGTTTTCCTTTCCTTTT 59.616 43.478 0.00 0.00 43.49 2.27
835 858 2.620886 CGAGTCAAGTAGAGAAGGGGGA 60.621 54.545 0.00 0.00 0.00 4.81
842 865 3.964411 TGGATTCCGAGTCAAGTAGAGA 58.036 45.455 0.00 0.00 0.00 3.10
843 866 4.082190 TGTTGGATTCCGAGTCAAGTAGAG 60.082 45.833 0.00 0.00 0.00 2.43
992 1016 2.173669 GCCACCACCATCGTCGATG 61.174 63.158 25.19 25.19 39.52 3.84
1198 1225 3.427425 CCGCGGCGAAATTGACCA 61.427 61.111 25.92 0.00 0.00 4.02
1268 1296 0.942962 CTCGATGAATCCAAGCCAGC 59.057 55.000 0.00 0.00 0.00 4.85
1269 1297 1.938577 CACTCGATGAATCCAAGCCAG 59.061 52.381 0.00 0.00 0.00 4.85
1356 1389 7.337689 AGTTGCAGCATCTTTATATCTGTGAAA 59.662 33.333 2.55 0.00 0.00 2.69
1363 1396 9.578439 AAAAGAAAGTTGCAGCATCTTTATATC 57.422 29.630 25.04 15.89 38.89 1.63
1404 1437 9.865321 ACACACACTAAAAACGTGTCTATATAT 57.135 29.630 0.00 0.00 43.26 0.86
1429 1462 5.499139 TGTGGACTGAAATGAGTGAAAAC 57.501 39.130 0.00 0.00 0.00 2.43
1431 1464 5.624159 AGATGTGGACTGAAATGAGTGAAA 58.376 37.500 0.00 0.00 0.00 2.69
1479 1512 6.433093 ACTCCCACCATTCACAAGTATAAAAC 59.567 38.462 0.00 0.00 0.00 2.43
1481 1514 6.134535 ACTCCCACCATTCACAAGTATAAA 57.865 37.500 0.00 0.00 0.00 1.40
1487 1520 1.073763 TGGACTCCCACCATTCACAAG 59.926 52.381 0.00 0.00 37.58 3.16
1498 1531 1.686052 GCAAAAACATGTGGACTCCCA 59.314 47.619 0.00 0.00 40.95 4.37
1545 1607 1.873903 CGAATGGCAGGATAGGAACCG 60.874 57.143 0.00 0.00 0.00 4.44
1885 1958 0.108662 CTGACTGGTAGCGCACATGA 60.109 55.000 11.47 0.00 0.00 3.07
1893 1978 0.868406 GTGCAACACTGACTGGTAGC 59.132 55.000 0.00 0.00 36.32 3.58
2137 2222 3.598019 AGAAAATGGCGTTGATGCAAT 57.402 38.095 0.00 0.00 36.28 3.56
2150 2235 6.320171 CAACCTGCAGTCTCATAAGAAAATG 58.680 40.000 13.81 0.00 31.93 2.32
2405 2490 3.533547 CCAAAATACATTGGCATGTGGG 58.466 45.455 11.26 3.89 43.92 4.61
2460 2545 2.424956 CTGGAGGGTTGATTTTGCTAGC 59.575 50.000 8.10 8.10 0.00 3.42
2514 2704 4.552166 TTCAAGCAAGTGAGTAAACTGC 57.448 40.909 0.00 0.00 0.00 4.40
2648 2838 7.652300 AAAAGATTTTTATTTGTTCTCCCGC 57.348 32.000 0.00 0.00 0.00 6.13
2791 2981 0.908910 ACTCGGTGATGGTGCCATTA 59.091 50.000 5.08 0.00 36.70 1.90
2806 2996 4.092091 CGGATTTTCTTCCTCAAAGACTCG 59.908 45.833 0.00 0.00 43.75 4.18
2979 3169 8.720562 CCTTCCAAGCCAAATTAAAAATAGTTG 58.279 33.333 0.00 0.00 0.00 3.16
2980 3170 8.655901 TCCTTCCAAGCCAAATTAAAAATAGTT 58.344 29.630 0.00 0.00 0.00 2.24
2982 3172 9.671279 ATTCCTTCCAAGCCAAATTAAAAATAG 57.329 29.630 0.00 0.00 0.00 1.73
2984 3174 8.795513 CAATTCCTTCCAAGCCAAATTAAAAAT 58.204 29.630 0.00 0.00 0.00 1.82
2985 3175 7.230309 CCAATTCCTTCCAAGCCAAATTAAAAA 59.770 33.333 0.00 0.00 0.00 1.94
3038 3230 5.211174 TGATGGCAGATCAATGACTAGAG 57.789 43.478 0.00 0.00 0.00 2.43
3245 3439 8.503458 AACATTCCAGATCAAATCTCAAGTAG 57.497 34.615 0.00 0.00 37.58 2.57
3246 3440 9.605275 CTAACATTCCAGATCAAATCTCAAGTA 57.395 33.333 0.00 0.00 37.58 2.24
3247 3441 8.105829 ACTAACATTCCAGATCAAATCTCAAGT 58.894 33.333 0.00 0.00 37.58 3.16
3294 3488 8.359875 TCATCCTGTATTTTTCTTGGCAATAA 57.640 30.769 0.00 0.00 0.00 1.40
3300 3494 7.040478 TGTGAGTTCATCCTGTATTTTTCTTGG 60.040 37.037 0.00 0.00 0.00 3.61
3517 3711 9.713713 GGGAGTATATGTCTTTTTAGAGATTCC 57.286 37.037 0.00 0.00 0.00 3.01
3520 3714 9.095700 GGAGGGAGTATATGTCTTTTTAGAGAT 57.904 37.037 0.00 0.00 0.00 2.75
3521 3715 7.230913 CGGAGGGAGTATATGTCTTTTTAGAGA 59.769 40.741 0.00 0.00 0.00 3.10
3522 3716 7.014422 ACGGAGGGAGTATATGTCTTTTTAGAG 59.986 40.741 0.00 0.00 0.00 2.43
3523 3717 6.837568 ACGGAGGGAGTATATGTCTTTTTAGA 59.162 38.462 0.00 0.00 0.00 2.10
3524 3718 7.052142 ACGGAGGGAGTATATGTCTTTTTAG 57.948 40.000 0.00 0.00 0.00 1.85
3525 3719 6.041296 GGACGGAGGGAGTATATGTCTTTTTA 59.959 42.308 0.00 0.00 0.00 1.52
3526 3720 5.163332 GGACGGAGGGAGTATATGTCTTTTT 60.163 44.000 0.00 0.00 0.00 1.94
3527 3721 4.344390 GGACGGAGGGAGTATATGTCTTTT 59.656 45.833 0.00 0.00 0.00 2.27
3528 3722 3.896272 GGACGGAGGGAGTATATGTCTTT 59.104 47.826 0.00 0.00 0.00 2.52
3529 3723 3.498334 GGACGGAGGGAGTATATGTCTT 58.502 50.000 0.00 0.00 0.00 3.01
3530 3724 2.225066 GGGACGGAGGGAGTATATGTCT 60.225 54.545 0.00 0.00 0.00 3.41
3531 3725 2.169330 GGGACGGAGGGAGTATATGTC 58.831 57.143 0.00 0.00 0.00 3.06
3532 3726 1.502039 TGGGACGGAGGGAGTATATGT 59.498 52.381 0.00 0.00 0.00 2.29
3533 3727 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
3534 3728 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
3535 3729 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3536 3730 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3537 3731 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3538 3732 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3539 3733 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3540 3734 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3541 3735 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3542 3736 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3543 3737 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3544 3738 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3545 3739 5.391629 GCTTAAGACACTTATTTTGGGACGG 60.392 44.000 6.67 0.00 0.00 4.79
3546 3740 5.411669 AGCTTAAGACACTTATTTTGGGACG 59.588 40.000 6.67 0.00 0.00 4.79
3547 3741 6.819397 AGCTTAAGACACTTATTTTGGGAC 57.181 37.500 6.67 0.00 0.00 4.46
3548 3742 8.161425 ACTAAGCTTAAGACACTTATTTTGGGA 58.839 33.333 6.67 0.00 0.00 4.37
3549 3743 8.336801 ACTAAGCTTAAGACACTTATTTTGGG 57.663 34.615 6.67 0.00 0.00 4.12
3553 3747 9.872721 GGAGTACTAAGCTTAAGACACTTATTT 57.127 33.333 6.67 0.00 0.00 1.40
3554 3748 8.476447 GGGAGTACTAAGCTTAAGACACTTATT 58.524 37.037 6.67 2.15 0.00 1.40
3555 3749 7.840210 AGGGAGTACTAAGCTTAAGACACTTAT 59.160 37.037 6.67 0.00 0.00 1.73
3556 3750 7.180663 AGGGAGTACTAAGCTTAAGACACTTA 58.819 38.462 6.67 3.97 0.00 2.24
3557 3751 6.017830 AGGGAGTACTAAGCTTAAGACACTT 58.982 40.000 6.67 2.91 0.00 3.16
3558 3752 5.581975 AGGGAGTACTAAGCTTAAGACACT 58.418 41.667 6.67 7.93 0.00 3.55
3559 3753 5.163530 GGAGGGAGTACTAAGCTTAAGACAC 60.164 48.000 6.67 6.92 0.00 3.67
3560 3754 4.954826 GGAGGGAGTACTAAGCTTAAGACA 59.045 45.833 6.67 0.00 0.00 3.41
3561 3755 4.036616 CGGAGGGAGTACTAAGCTTAAGAC 59.963 50.000 6.67 8.29 0.00 3.01
3562 3756 4.205587 CGGAGGGAGTACTAAGCTTAAGA 58.794 47.826 6.67 0.00 0.00 2.10
3563 3757 3.952967 ACGGAGGGAGTACTAAGCTTAAG 59.047 47.826 7.74 0.00 0.00 1.85
3564 3758 3.950395 GACGGAGGGAGTACTAAGCTTAA 59.050 47.826 7.74 0.00 0.00 1.85
3565 3759 3.549794 GACGGAGGGAGTACTAAGCTTA 58.450 50.000 5.94 5.94 0.00 3.09
3566 3760 2.377073 GACGGAGGGAGTACTAAGCTT 58.623 52.381 3.48 3.48 0.00 3.74
3567 3761 1.409942 GGACGGAGGGAGTACTAAGCT 60.410 57.143 0.00 0.00 0.00 3.74
3568 3762 1.031235 GGACGGAGGGAGTACTAAGC 58.969 60.000 0.00 0.00 0.00 3.09
3569 3763 1.307097 CGGACGGAGGGAGTACTAAG 58.693 60.000 0.00 0.00 0.00 2.18
3570 3764 0.107017 CCGGACGGAGGGAGTACTAA 60.107 60.000 4.40 0.00 37.50 2.24
3571 3765 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
3572 3766 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3573 3767 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3574 3768 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3575 3769 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3576 3770 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3577 3771 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3578 3772 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3579 3773 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3580 3774 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3581 3775 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
3582 3776 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
3583 3777 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
3584 3778 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
3585 3779 6.155565 TCATTTCTAGGACAAGTATTTCCGGA 59.844 38.462 0.00 0.00 36.95 5.14
3586 3780 6.346096 TCATTTCTAGGACAAGTATTTCCGG 58.654 40.000 0.00 0.00 36.95 5.14
3587 3781 8.338259 CAATCATTTCTAGGACAAGTATTTCCG 58.662 37.037 0.00 0.00 36.95 4.30
3588 3782 9.396022 TCAATCATTTCTAGGACAAGTATTTCC 57.604 33.333 0.00 0.00 0.00 3.13
3594 3788 9.300681 TCATTTTCAATCATTTCTAGGACAAGT 57.699 29.630 0.00 0.00 0.00 3.16
3639 3833 9.483489 TCCTACAAATGGTTGTATCTAGACTTA 57.517 33.333 0.00 0.00 46.57 2.24
3640 3834 8.258708 GTCCTACAAATGGTTGTATCTAGACTT 58.741 37.037 0.00 0.00 46.57 3.01
3641 3835 7.399191 TGTCCTACAAATGGTTGTATCTAGACT 59.601 37.037 0.00 0.00 46.57 3.24
3642 3836 7.553334 TGTCCTACAAATGGTTGTATCTAGAC 58.447 38.462 0.00 6.20 46.57 2.59
3643 3837 7.727578 TGTCCTACAAATGGTTGTATCTAGA 57.272 36.000 0.00 0.00 46.57 2.43
3644 3838 8.041323 ACTTGTCCTACAAATGGTTGTATCTAG 58.959 37.037 0.10 0.00 46.57 2.43
3645 3839 7.913789 ACTTGTCCTACAAATGGTTGTATCTA 58.086 34.615 0.10 0.00 46.57 1.98
3646 3840 6.779860 ACTTGTCCTACAAATGGTTGTATCT 58.220 36.000 0.10 0.00 46.57 1.98
3647 3841 8.732746 ATACTTGTCCTACAAATGGTTGTATC 57.267 34.615 0.10 0.00 46.57 2.24
3648 3842 9.528489 AAATACTTGTCCTACAAATGGTTGTAT 57.472 29.630 0.10 0.00 46.57 2.29
3649 3843 8.927675 AAATACTTGTCCTACAAATGGTTGTA 57.072 30.769 0.00 0.00 46.33 2.41
3651 3845 8.356657 TGAAAATACTTGTCCTACAAATGGTTG 58.643 33.333 0.00 0.00 37.69 3.77
3652 3846 8.472007 TGAAAATACTTGTCCTACAAATGGTT 57.528 30.769 0.00 0.00 37.69 3.67
3653 3847 7.176690 CCTGAAAATACTTGTCCTACAAATGGT 59.823 37.037 0.00 0.00 37.69 3.55
3654 3848 7.538575 CCTGAAAATACTTGTCCTACAAATGG 58.461 38.462 0.00 0.00 37.69 3.16
3655 3849 7.029563 GCCTGAAAATACTTGTCCTACAAATG 58.970 38.462 0.00 0.00 37.69 2.32
3656 3850 6.128007 CGCCTGAAAATACTTGTCCTACAAAT 60.128 38.462 0.00 0.00 37.69 2.32
3657 3851 5.180492 CGCCTGAAAATACTTGTCCTACAAA 59.820 40.000 0.00 0.00 37.69 2.83
3658 3852 4.693566 CGCCTGAAAATACTTGTCCTACAA 59.306 41.667 0.00 0.00 36.54 2.41
3659 3853 4.250464 CGCCTGAAAATACTTGTCCTACA 58.750 43.478 0.00 0.00 0.00 2.74
3660 3854 3.621715 CCGCCTGAAAATACTTGTCCTAC 59.378 47.826 0.00 0.00 0.00 3.18
3661 3855 3.516300 TCCGCCTGAAAATACTTGTCCTA 59.484 43.478 0.00 0.00 0.00 2.94
3662 3856 2.304761 TCCGCCTGAAAATACTTGTCCT 59.695 45.455 0.00 0.00 0.00 3.85
3663 3857 2.678336 CTCCGCCTGAAAATACTTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
3664 3858 2.678336 CCTCCGCCTGAAAATACTTGTC 59.322 50.000 0.00 0.00 0.00 3.18
3665 3859 2.618045 CCCTCCGCCTGAAAATACTTGT 60.618 50.000 0.00 0.00 0.00 3.16
3666 3860 2.017049 CCCTCCGCCTGAAAATACTTG 58.983 52.381 0.00 0.00 0.00 3.16
3667 3861 1.913419 TCCCTCCGCCTGAAAATACTT 59.087 47.619 0.00 0.00 0.00 2.24
3668 3862 1.580059 TCCCTCCGCCTGAAAATACT 58.420 50.000 0.00 0.00 0.00 2.12
3669 3863 2.014857 GTTCCCTCCGCCTGAAAATAC 58.985 52.381 0.00 0.00 0.00 1.89
3670 3864 1.913419 AGTTCCCTCCGCCTGAAAATA 59.087 47.619 0.00 0.00 0.00 1.40
3671 3865 0.698818 AGTTCCCTCCGCCTGAAAAT 59.301 50.000 0.00 0.00 0.00 1.82
3672 3866 0.476771 AAGTTCCCTCCGCCTGAAAA 59.523 50.000 0.00 0.00 0.00 2.29
3673 3867 0.476771 AAAGTTCCCTCCGCCTGAAA 59.523 50.000 0.00 0.00 0.00 2.69
3674 3868 1.354101 TAAAGTTCCCTCCGCCTGAA 58.646 50.000 0.00 0.00 0.00 3.02
3675 3869 1.580059 ATAAAGTTCCCTCCGCCTGA 58.420 50.000 0.00 0.00 0.00 3.86
3676 3870 2.434702 AGTATAAAGTTCCCTCCGCCTG 59.565 50.000 0.00 0.00 0.00 4.85
3677 3871 2.760581 AGTATAAAGTTCCCTCCGCCT 58.239 47.619 0.00 0.00 0.00 5.52
3678 3872 3.893813 TCTAGTATAAAGTTCCCTCCGCC 59.106 47.826 0.00 0.00 0.00 6.13
3679 3873 4.583907 ACTCTAGTATAAAGTTCCCTCCGC 59.416 45.833 0.00 0.00 0.00 5.54
3680 3874 6.712179 AACTCTAGTATAAAGTTCCCTCCG 57.288 41.667 0.00 0.00 0.00 4.63
3695 3889 9.694137 GTGTCTCAACTTTGTATTAACTCTAGT 57.306 33.333 0.00 0.00 0.00 2.57
3696 3890 9.915629 AGTGTCTCAACTTTGTATTAACTCTAG 57.084 33.333 0.00 0.00 0.00 2.43
3705 3899 9.862371 CTCTACATAAGTGTCTCAACTTTGTAT 57.138 33.333 0.00 0.00 40.77 2.29
3706 3900 9.074576 TCTCTACATAAGTGTCTCAACTTTGTA 57.925 33.333 0.00 4.25 40.77 2.41
3707 3901 7.868415 GTCTCTACATAAGTGTCTCAACTTTGT 59.132 37.037 0.00 3.43 40.77 2.83
3708 3902 7.061210 CGTCTCTACATAAGTGTCTCAACTTTG 59.939 40.741 0.00 0.00 40.77 2.77
3709 3903 7.085116 CGTCTCTACATAAGTGTCTCAACTTT 58.915 38.462 0.00 0.00 40.77 2.66
3710 3904 6.349445 CCGTCTCTACATAAGTGTCTCAACTT 60.349 42.308 0.00 0.00 42.89 2.66
3711 3905 5.124138 CCGTCTCTACATAAGTGTCTCAACT 59.876 44.000 0.00 0.00 39.77 3.16
3712 3906 5.123502 TCCGTCTCTACATAAGTGTCTCAAC 59.876 44.000 0.00 0.00 39.77 3.18
3713 3907 5.250982 TCCGTCTCTACATAAGTGTCTCAA 58.749 41.667 0.00 0.00 39.77 3.02
3714 3908 4.840271 TCCGTCTCTACATAAGTGTCTCA 58.160 43.478 0.00 0.00 39.77 3.27
3715 3909 4.273969 CCTCCGTCTCTACATAAGTGTCTC 59.726 50.000 0.00 0.00 39.77 3.36
3716 3910 4.200874 CCTCCGTCTCTACATAAGTGTCT 58.799 47.826 0.00 0.00 39.77 3.41
3717 3911 3.315749 CCCTCCGTCTCTACATAAGTGTC 59.684 52.174 0.00 0.00 39.77 3.67
3718 3912 3.053842 TCCCTCCGTCTCTACATAAGTGT 60.054 47.826 0.00 0.00 42.39 3.55
3719 3913 3.552875 TCCCTCCGTCTCTACATAAGTG 58.447 50.000 0.00 0.00 0.00 3.16
3720 3914 3.202595 ACTCCCTCCGTCTCTACATAAGT 59.797 47.826 0.00 0.00 0.00 2.24
3721 3915 3.822940 ACTCCCTCCGTCTCTACATAAG 58.177 50.000 0.00 0.00 0.00 1.73
3722 3916 3.947612 ACTCCCTCCGTCTCTACATAA 57.052 47.619 0.00 0.00 0.00 1.90
3723 3917 5.579753 AATACTCCCTCCGTCTCTACATA 57.420 43.478 0.00 0.00 0.00 2.29
3724 3918 4.456662 AATACTCCCTCCGTCTCTACAT 57.543 45.455 0.00 0.00 0.00 2.29
3725 3919 3.947612 AATACTCCCTCCGTCTCTACA 57.052 47.619 0.00 0.00 0.00 2.74
3726 3920 4.761227 CCTAAATACTCCCTCCGTCTCTAC 59.239 50.000 0.00 0.00 0.00 2.59
3727 3921 4.662179 TCCTAAATACTCCCTCCGTCTCTA 59.338 45.833 0.00 0.00 0.00 2.43
3728 3922 3.462579 TCCTAAATACTCCCTCCGTCTCT 59.537 47.826 0.00 0.00 0.00 3.10
3729 3923 3.830121 TCCTAAATACTCCCTCCGTCTC 58.170 50.000 0.00 0.00 0.00 3.36
3730 3924 3.967467 TCCTAAATACTCCCTCCGTCT 57.033 47.619 0.00 0.00 0.00 4.18
3731 3925 3.321396 CCTTCCTAAATACTCCCTCCGTC 59.679 52.174 0.00 0.00 0.00 4.79
3732 3926 3.306613 CCTTCCTAAATACTCCCTCCGT 58.693 50.000 0.00 0.00 0.00 4.69
3733 3927 2.633481 CCCTTCCTAAATACTCCCTCCG 59.367 54.545 0.00 0.00 0.00 4.63
3734 3928 3.904965 CTCCCTTCCTAAATACTCCCTCC 59.095 52.174 0.00 0.00 0.00 4.30
3735 3929 3.904965 CCTCCCTTCCTAAATACTCCCTC 59.095 52.174 0.00 0.00 0.00 4.30
3736 3930 3.376555 CCCTCCCTTCCTAAATACTCCCT 60.377 52.174 0.00 0.00 0.00 4.20
3737 3931 2.980379 CCCTCCCTTCCTAAATACTCCC 59.020 54.545 0.00 0.00 0.00 4.30
3738 3932 3.904965 CTCCCTCCCTTCCTAAATACTCC 59.095 52.174 0.00 0.00 0.00 3.85
3739 3933 4.345547 CACTCCCTCCCTTCCTAAATACTC 59.654 50.000 0.00 0.00 0.00 2.59
3740 3934 4.299485 CACTCCCTCCCTTCCTAAATACT 58.701 47.826 0.00 0.00 0.00 2.12
3741 3935 3.181453 GCACTCCCTCCCTTCCTAAATAC 60.181 52.174 0.00 0.00 0.00 1.89
3742 3936 3.046374 GCACTCCCTCCCTTCCTAAATA 58.954 50.000 0.00 0.00 0.00 1.40
3743 3937 1.847088 GCACTCCCTCCCTTCCTAAAT 59.153 52.381 0.00 0.00 0.00 1.40
3744 3938 1.203440 AGCACTCCCTCCCTTCCTAAA 60.203 52.381 0.00 0.00 0.00 1.85
3745 3939 0.417841 AGCACTCCCTCCCTTCCTAA 59.582 55.000 0.00 0.00 0.00 2.69
3746 3940 0.417841 AAGCACTCCCTCCCTTCCTA 59.582 55.000 0.00 0.00 0.00 2.94
3747 3941 1.162085 AAGCACTCCCTCCCTTCCT 59.838 57.895 0.00 0.00 0.00 3.36
3748 3942 1.301293 CAAGCACTCCCTCCCTTCC 59.699 63.158 0.00 0.00 0.00 3.46
3749 3943 1.377856 GCAAGCACTCCCTCCCTTC 60.378 63.158 0.00 0.00 0.00 3.46
3750 3944 1.719063 TTGCAAGCACTCCCTCCCTT 61.719 55.000 0.00 0.00 0.00 3.95
3751 3945 2.134630 CTTGCAAGCACTCCCTCCCT 62.135 60.000 14.65 0.00 0.00 4.20
3752 3946 1.676967 CTTGCAAGCACTCCCTCCC 60.677 63.158 14.65 0.00 0.00 4.30
3753 3947 3.993535 CTTGCAAGCACTCCCTCC 58.006 61.111 14.65 0.00 0.00 4.30
3763 3957 2.483013 CCCATCCATGATTGCTTGCAAG 60.483 50.000 22.44 22.44 0.00 4.01
3764 3958 1.483004 CCCATCCATGATTGCTTGCAA 59.517 47.619 10.57 10.57 0.00 4.08
3765 3959 1.116308 CCCATCCATGATTGCTTGCA 58.884 50.000 0.00 0.00 0.00 4.08
3766 3960 0.249741 GCCCATCCATGATTGCTTGC 60.250 55.000 0.00 0.00 0.00 4.01
3767 3961 1.068588 CTGCCCATCCATGATTGCTTG 59.931 52.381 0.00 0.00 0.00 4.01
3768 3962 1.342674 ACTGCCCATCCATGATTGCTT 60.343 47.619 0.00 0.00 0.00 3.91
3769 3963 0.260816 ACTGCCCATCCATGATTGCT 59.739 50.000 0.00 0.00 0.00 3.91
3770 3964 0.672342 GACTGCCCATCCATGATTGC 59.328 55.000 0.00 0.00 0.00 3.56
3771 3965 1.954382 CTGACTGCCCATCCATGATTG 59.046 52.381 0.00 0.00 0.00 2.67
3772 3966 1.567649 ACTGACTGCCCATCCATGATT 59.432 47.619 0.00 0.00 0.00 2.57
3773 3967 1.142465 GACTGACTGCCCATCCATGAT 59.858 52.381 0.00 0.00 0.00 2.45
3774 3968 0.543277 GACTGACTGCCCATCCATGA 59.457 55.000 0.00 0.00 0.00 3.07
3775 3969 0.253894 TGACTGACTGCCCATCCATG 59.746 55.000 0.00 0.00 0.00 3.66
3776 3970 0.545171 CTGACTGACTGCCCATCCAT 59.455 55.000 0.00 0.00 0.00 3.41
3777 3971 1.556373 CCTGACTGACTGCCCATCCA 61.556 60.000 0.00 0.00 0.00 3.41
3778 3972 1.222936 CCTGACTGACTGCCCATCC 59.777 63.158 0.00 0.00 0.00 3.51
3779 3973 0.326264 AACCTGACTGACTGCCCATC 59.674 55.000 0.00 0.00 0.00 3.51
3780 3974 1.279271 GTAACCTGACTGACTGCCCAT 59.721 52.381 0.00 0.00 0.00 4.00
3781 3975 0.685097 GTAACCTGACTGACTGCCCA 59.315 55.000 0.00 0.00 0.00 5.36
3782 3976 0.036294 GGTAACCTGACTGACTGCCC 60.036 60.000 0.00 0.00 0.00 5.36
3783 3977 0.977395 AGGTAACCTGACTGACTGCC 59.023 55.000 0.00 0.00 29.57 4.85
3784 3978 2.417719 CAAGGTAACCTGACTGACTGC 58.582 52.381 0.00 0.00 32.13 4.40
3785 3979 2.417719 GCAAGGTAACCTGACTGACTG 58.582 52.381 0.00 0.00 32.13 3.51
3786 3980 1.000955 CGCAAGGTAACCTGACTGACT 59.999 52.381 0.00 0.00 32.13 3.41
3787 3981 1.000506 TCGCAAGGTAACCTGACTGAC 59.999 52.381 0.00 0.00 32.13 3.51
3788 3982 1.000506 GTCGCAAGGTAACCTGACTGA 59.999 52.381 0.00 0.00 32.13 3.41
3789 3983 1.270094 TGTCGCAAGGTAACCTGACTG 60.270 52.381 0.00 0.00 32.13 3.51
3790 3984 1.045407 TGTCGCAAGGTAACCTGACT 58.955 50.000 0.00 0.00 32.13 3.41
3791 3985 1.529865 GTTGTCGCAAGGTAACCTGAC 59.470 52.381 0.00 0.00 32.13 3.51
3792 3986 1.870580 CGTTGTCGCAAGGTAACCTGA 60.871 52.381 0.00 0.00 32.13 3.86
3793 3987 0.511221 CGTTGTCGCAAGGTAACCTG 59.489 55.000 0.00 0.00 32.13 4.00
3794 3988 0.601841 CCGTTGTCGCAAGGTAACCT 60.602 55.000 10.02 0.00 33.12 3.50
3795 3989 1.864176 CCGTTGTCGCAAGGTAACC 59.136 57.895 10.02 0.00 38.47 2.85
3796 3990 1.205820 GCCGTTGTCGCAAGGTAAC 59.794 57.895 10.02 0.00 38.47 2.50
3797 3991 0.947180 GAGCCGTTGTCGCAAGGTAA 60.947 55.000 10.02 0.00 38.47 2.85
3798 3992 1.373748 GAGCCGTTGTCGCAAGGTA 60.374 57.895 10.02 0.00 38.47 3.08
3799 3993 2.665185 GAGCCGTTGTCGCAAGGT 60.665 61.111 10.02 0.00 38.47 3.50
3800 3994 2.357517 AGAGCCGTTGTCGCAAGG 60.358 61.111 5.62 5.62 38.47 3.61
3801 3995 2.720758 CGAGAGCCGTTGTCGCAAG 61.721 63.158 0.00 0.00 35.70 4.01
3802 3996 2.733218 CGAGAGCCGTTGTCGCAA 60.733 61.111 0.00 0.00 35.70 4.85
3811 4005 4.421479 AACTCCGCACGAGAGCCG 62.421 66.667 4.86 0.00 41.63 5.52
3812 4006 2.209064 TACAACTCCGCACGAGAGCC 62.209 60.000 4.86 0.00 41.63 4.70
3813 4007 0.179134 ATACAACTCCGCACGAGAGC 60.179 55.000 4.86 0.00 41.63 4.09
3814 4008 1.132453 TGATACAACTCCGCACGAGAG 59.868 52.381 4.86 6.90 41.63 3.20
3815 4009 1.170442 TGATACAACTCCGCACGAGA 58.830 50.000 4.86 0.00 41.63 4.04
3816 4010 1.990799 TTGATACAACTCCGCACGAG 58.009 50.000 0.00 0.00 44.95 4.18
3817 4011 2.442212 TTTGATACAACTCCGCACGA 57.558 45.000 0.00 0.00 0.00 4.35
3818 4012 2.223021 CCATTTGATACAACTCCGCACG 60.223 50.000 0.00 0.00 0.00 5.34
3819 4013 2.097466 CCCATTTGATACAACTCCGCAC 59.903 50.000 0.00 0.00 0.00 5.34
3820 4014 2.290641 ACCCATTTGATACAACTCCGCA 60.291 45.455 0.00 0.00 0.00 5.69
3821 4015 2.365582 ACCCATTTGATACAACTCCGC 58.634 47.619 0.00 0.00 0.00 5.54
3822 4016 6.238648 GGAATTACCCATTTGATACAACTCCG 60.239 42.308 0.00 0.00 0.00 4.63
3823 4017 7.039313 GGAATTACCCATTTGATACAACTCC 57.961 40.000 0.00 0.00 0.00 3.85
3839 4033 1.173913 GCACCTGTGTGGGAATTACC 58.826 55.000 0.00 0.00 42.99 2.85
3840 4034 1.173913 GGCACCTGTGTGGGAATTAC 58.826 55.000 0.00 0.00 42.99 1.89
3841 4035 1.072266 AGGCACCTGTGTGGGAATTA 58.928 50.000 0.00 0.00 42.99 1.40
3842 4036 0.188342 AAGGCACCTGTGTGGGAATT 59.812 50.000 0.00 0.00 42.99 2.17
3843 4037 0.540365 CAAGGCACCTGTGTGGGAAT 60.540 55.000 0.00 0.00 42.99 3.01
3844 4038 1.152777 CAAGGCACCTGTGTGGGAA 60.153 57.895 0.00 0.00 42.99 3.97
3845 4039 2.515398 CAAGGCACCTGTGTGGGA 59.485 61.111 0.00 0.00 42.99 4.37
3846 4040 2.430704 ATCCAAGGCACCTGTGTGGG 62.431 60.000 6.14 0.71 42.99 4.61
3847 4041 1.075482 ATCCAAGGCACCTGTGTGG 59.925 57.895 0.11 0.11 42.99 4.17
3848 4042 1.870055 GCATCCAAGGCACCTGTGTG 61.870 60.000 0.00 0.00 45.65 3.82
3849 4043 1.604593 GCATCCAAGGCACCTGTGT 60.605 57.895 0.00 0.00 0.00 3.72
3850 4044 2.693762 CGCATCCAAGGCACCTGTG 61.694 63.158 0.00 0.00 0.00 3.66
3851 4045 2.360350 CGCATCCAAGGCACCTGT 60.360 61.111 0.00 0.00 0.00 4.00
3852 4046 3.136123 CCGCATCCAAGGCACCTG 61.136 66.667 0.00 0.00 0.00 4.00
3853 4047 2.424842 TTTCCGCATCCAAGGCACCT 62.425 55.000 0.00 0.00 0.00 4.00
3854 4048 1.937546 CTTTCCGCATCCAAGGCACC 61.938 60.000 0.00 0.00 0.00 5.01
3855 4049 1.244019 ACTTTCCGCATCCAAGGCAC 61.244 55.000 0.00 0.00 0.00 5.01
3856 4050 0.960364 GACTTTCCGCATCCAAGGCA 60.960 55.000 0.00 0.00 0.00 4.75
3857 4051 0.678048 AGACTTTCCGCATCCAAGGC 60.678 55.000 0.00 0.00 0.00 4.35
3858 4052 1.826385 AAGACTTTCCGCATCCAAGG 58.174 50.000 0.00 0.00 0.00 3.61
3859 4053 2.813754 TGAAAGACTTTCCGCATCCAAG 59.186 45.455 22.23 0.00 38.90 3.61
3860 4054 2.813754 CTGAAAGACTTTCCGCATCCAA 59.186 45.455 22.23 3.37 38.90 3.53
3861 4055 2.224523 ACTGAAAGACTTTCCGCATCCA 60.225 45.455 22.23 4.61 38.90 3.41
3862 4056 2.160417 CACTGAAAGACTTTCCGCATCC 59.840 50.000 22.23 0.20 38.90 3.51
3863 4057 2.413371 GCACTGAAAGACTTTCCGCATC 60.413 50.000 22.23 7.60 38.90 3.91
3864 4058 1.537202 GCACTGAAAGACTTTCCGCAT 59.463 47.619 22.23 5.28 38.90 4.73
3865 4059 0.944386 GCACTGAAAGACTTTCCGCA 59.056 50.000 22.23 6.56 38.90 5.69
3866 4060 0.238553 GGCACTGAAAGACTTTCCGC 59.761 55.000 22.23 20.22 38.90 5.54
3867 4061 1.264288 GTGGCACTGAAAGACTTTCCG 59.736 52.381 22.23 18.75 38.90 4.30
3868 4062 1.609072 GGTGGCACTGAAAGACTTTCC 59.391 52.381 22.23 9.95 38.90 3.13
3869 4063 2.576615 AGGTGGCACTGAAAGACTTTC 58.423 47.619 19.17 19.17 40.08 2.62
3870 4064 2.736670 AGGTGGCACTGAAAGACTTT 57.263 45.000 18.45 0.00 37.43 2.66
3871 4065 2.706190 ACTAGGTGGCACTGAAAGACTT 59.294 45.455 18.45 0.00 37.43 3.01
3872 4066 2.330216 ACTAGGTGGCACTGAAAGACT 58.670 47.619 18.45 6.57 37.43 3.24
3873 4067 2.841442 ACTAGGTGGCACTGAAAGAC 57.159 50.000 18.45 0.00 37.43 3.01
3874 4068 5.012664 TGAATAACTAGGTGGCACTGAAAGA 59.987 40.000 18.45 0.00 37.43 2.52
3875 4069 5.245531 TGAATAACTAGGTGGCACTGAAAG 58.754 41.667 18.45 11.74 42.29 2.62
3876 4070 5.235850 TGAATAACTAGGTGGCACTGAAA 57.764 39.130 18.45 0.00 0.00 2.69
3877 4071 4.901197 TGAATAACTAGGTGGCACTGAA 57.099 40.909 18.45 2.31 0.00 3.02
3878 4072 4.469586 TGATGAATAACTAGGTGGCACTGA 59.530 41.667 18.45 4.70 0.00 3.41
3879 4073 4.769688 TGATGAATAACTAGGTGGCACTG 58.230 43.478 18.45 10.54 0.00 3.66
3880 4074 5.130975 TGATGATGAATAACTAGGTGGCACT 59.869 40.000 18.45 6.21 0.00 4.40
3881 4075 5.368145 TGATGATGAATAACTAGGTGGCAC 58.632 41.667 9.70 9.70 0.00 5.01
3882 4076 5.628797 TGATGATGAATAACTAGGTGGCA 57.371 39.130 0.00 0.00 0.00 4.92
3883 4077 5.413833 CCATGATGATGAATAACTAGGTGGC 59.586 44.000 0.00 0.00 0.00 5.01
3884 4078 6.772605 TCCATGATGATGAATAACTAGGTGG 58.227 40.000 0.00 0.00 0.00 4.61
3885 4079 7.448420 ACTCCATGATGATGAATAACTAGGTG 58.552 38.462 0.00 0.00 0.00 4.00
3886 4080 7.623999 ACTCCATGATGATGAATAACTAGGT 57.376 36.000 0.00 0.00 0.00 3.08
3894 4088 9.490083 TCTCTGATATACTCCATGATGATGAAT 57.510 33.333 0.00 0.00 0.00 2.57
3895 4089 8.890410 TCTCTGATATACTCCATGATGATGAA 57.110 34.615 0.00 0.00 0.00 2.57
3902 4096 9.759473 TGACAATATCTCTGATATACTCCATGA 57.241 33.333 0.00 0.00 0.00 3.07
3903 4097 9.800433 GTGACAATATCTCTGATATACTCCATG 57.200 37.037 1.13 0.00 0.00 3.66
3904 4098 9.539194 TGTGACAATATCTCTGATATACTCCAT 57.461 33.333 1.13 0.00 0.00 3.41
3905 4099 8.940397 TGTGACAATATCTCTGATATACTCCA 57.060 34.615 1.13 0.00 0.00 3.86
3924 4118 9.406113 TGATGTTGAATCCATATAAATGTGACA 57.594 29.630 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.