Multiple sequence alignment - TraesCS1A01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G191300 chr1A 100.000 4780 0 0 1 4780 345782702 345787481 0.000000e+00 8828.0
1 TraesCS1A01G191300 chr1D 93.536 1516 66 19 3281 4780 273813873 273815372 0.000000e+00 2228.0
2 TraesCS1A01G191300 chr1D 88.395 1508 122 40 1671 3156 273812371 273813847 0.000000e+00 1766.0
3 TraesCS1A01G191300 chr1D 91.624 788 44 11 566 1351 273811247 273812014 0.000000e+00 1070.0
4 TraesCS1A01G191300 chr1D 90.423 449 29 6 1 448 273810746 273811181 3.210000e-161 579.0
5 TraesCS1A01G191300 chr1B 88.661 1561 101 35 3219 4753 373143007 373144517 0.000000e+00 1832.0
6 TraesCS1A01G191300 chr1B 88.707 1470 93 25 1618 3060 373141561 373142984 0.000000e+00 1727.0
7 TraesCS1A01G191300 chr1B 89.979 938 59 19 610 1533 373140535 373141451 0.000000e+00 1179.0
8 TraesCS1A01G191300 chr1B 90.135 446 31 6 1 445 373139967 373140400 6.940000e-158 568.0
9 TraesCS1A01G191300 chr1B 94.737 57 1 2 393 448 373140400 373140455 2.370000e-13 87.9
10 TraesCS1A01G191300 chr1B 96.078 51 2 0 1554 1604 373141517 373141567 3.070000e-12 84.2
11 TraesCS1A01G191300 chr3A 100.000 28 0 0 4753 4780 171034880 171034907 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G191300 chr1A 345782702 345787481 4779 False 8828.000000 8828 100.000000 1 4780 1 chr1A.!!$F1 4779
1 TraesCS1A01G191300 chr1D 273810746 273815372 4626 False 1410.750000 2228 90.994500 1 4780 4 chr1D.!!$F1 4779
2 TraesCS1A01G191300 chr1B 373139967 373144517 4550 False 913.016667 1832 91.382833 1 4753 6 chr1B.!!$F1 4752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 528 0.255318 GGAGAGGACTAGGACACCGA 59.745 60.0 0.0 0.0 0.00 4.69 F
1699 1883 0.035056 AATAGGCTGTGGTGGCTGTC 60.035 55.0 0.0 0.0 42.92 3.51 F
2517 2712 0.034337 TGGGTACTTCGGAGTTGTGC 59.966 55.0 0.0 0.0 37.33 4.57 F
3009 3223 0.037326 TCTCGTCCCAGTTGCACATC 60.037 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1963 0.317770 GGCACCAACAACACATGACG 60.318 55.0 0.0 0.0 0.00 4.35 R
3287 3517 0.252696 AGGTCAGTGGTGCTGGGATA 60.253 55.0 0.0 0.0 45.08 2.59 R
3698 3928 1.429463 ACTCGAACGATTCAGCCAAC 58.571 50.0 0.0 0.0 0.00 3.77 R
4533 4793 0.390209 GCCACGCAGCATCCAAAAAT 60.390 50.0 0.0 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.691575 TGAATTCTTGTCCGCCCATTTA 58.308 40.909 7.05 0.00 0.00 1.40
63 64 3.886505 GTCCGCCCATTTATTTATCACCA 59.113 43.478 0.00 0.00 0.00 4.17
87 88 8.028938 CCACTTTGGTCTTTTATTAGTCAATGG 58.971 37.037 0.00 0.00 31.35 3.16
114 115 3.791320 AGATGAGAGGACACCCTAACAA 58.209 45.455 0.00 0.00 44.53 2.83
117 118 6.146760 AGATGAGAGGACACCCTAACAATAT 58.853 40.000 0.00 0.00 44.53 1.28
125 126 7.798071 AGGACACCCTAACAATATCGATTTAA 58.202 34.615 1.71 0.00 42.15 1.52
151 152 9.799106 ACATTCCATTATCGAATCTCCTAAATT 57.201 29.630 0.00 0.00 0.00 1.82
159 160 6.985188 TCGAATCTCCTAAATTGGAAACAG 57.015 37.500 0.00 0.00 44.54 3.16
186 187 5.551760 AGTAATCGAAATCTTGTGCCAAG 57.448 39.130 8.22 8.22 0.00 3.61
206 207 1.947456 GGGGCCATACGAAATTCACTC 59.053 52.381 4.39 0.00 0.00 3.51
219 220 5.556382 CGAAATTCACTCGTGATAAATCCCG 60.556 44.000 0.00 0.00 39.64 5.14
298 299 6.716628 AGCAATTTTAGACTTGATGTTGGAGA 59.283 34.615 0.00 0.00 0.00 3.71
320 321 7.926018 GGAGAAGAGAAATGATTCCTAAGACTC 59.074 40.741 0.00 0.00 36.12 3.36
327 328 6.838401 AATGATTCCTAAGACTCATCCCTT 57.162 37.500 0.00 0.00 40.46 3.95
433 487 6.184068 TGAGCAAATGCCATAGTTAGGTTTA 58.816 36.000 0.94 0.00 43.38 2.01
434 488 6.833416 TGAGCAAATGCCATAGTTAGGTTTAT 59.167 34.615 0.94 0.00 43.38 1.40
435 489 7.042797 AGCAAATGCCATAGTTAGGTTTATG 57.957 36.000 0.94 0.00 43.38 1.90
436 490 6.833416 AGCAAATGCCATAGTTAGGTTTATGA 59.167 34.615 0.94 0.00 43.38 2.15
437 491 7.506938 AGCAAATGCCATAGTTAGGTTTATGAT 59.493 33.333 0.94 0.00 43.38 2.45
441 495 8.766994 ATGCCATAGTTAGGTTTATGATTTGT 57.233 30.769 0.00 0.00 30.54 2.83
442 496 7.995289 TGCCATAGTTAGGTTTATGATTTGTG 58.005 34.615 0.00 0.00 30.54 3.33
443 497 7.831690 TGCCATAGTTAGGTTTATGATTTGTGA 59.168 33.333 0.00 0.00 30.54 3.58
448 502 8.511604 AGTTAGGTTTATGATTTGTGATCCTG 57.488 34.615 0.00 0.00 0.00 3.86
449 503 8.109634 AGTTAGGTTTATGATTTGTGATCCTGT 58.890 33.333 0.00 0.00 0.00 4.00
450 504 9.391006 GTTAGGTTTATGATTTGTGATCCTGTA 57.609 33.333 0.00 0.00 0.00 2.74
451 505 9.967451 TTAGGTTTATGATTTGTGATCCTGTAA 57.033 29.630 0.00 0.00 0.00 2.41
452 506 8.281212 AGGTTTATGATTTGTGATCCTGTAAC 57.719 34.615 0.00 0.00 0.00 2.50
453 507 7.065803 AGGTTTATGATTTGTGATCCTGTAACG 59.934 37.037 0.00 0.00 0.00 3.18
454 508 7.065324 GGTTTATGATTTGTGATCCTGTAACGA 59.935 37.037 0.00 0.00 0.00 3.85
455 509 7.770801 TTATGATTTGTGATCCTGTAACGAG 57.229 36.000 0.00 0.00 0.00 4.18
456 510 4.503910 TGATTTGTGATCCTGTAACGAGG 58.496 43.478 0.00 0.00 0.00 4.63
457 511 4.221924 TGATTTGTGATCCTGTAACGAGGA 59.778 41.667 0.00 0.00 46.47 3.71
458 512 3.868757 TTGTGATCCTGTAACGAGGAG 57.131 47.619 0.00 0.00 45.60 3.69
459 513 3.081710 TGTGATCCTGTAACGAGGAGA 57.918 47.619 0.00 0.00 45.60 3.71
460 514 3.017442 TGTGATCCTGTAACGAGGAGAG 58.983 50.000 0.00 0.00 45.60 3.20
461 515 2.359531 GTGATCCTGTAACGAGGAGAGG 59.640 54.545 0.00 0.00 45.60 3.69
462 516 2.241430 TGATCCTGTAACGAGGAGAGGA 59.759 50.000 0.00 0.00 45.60 3.71
463 517 2.125773 TCCTGTAACGAGGAGAGGAC 57.874 55.000 0.00 0.00 37.20 3.85
464 518 1.634459 TCCTGTAACGAGGAGAGGACT 59.366 52.381 0.00 0.00 37.20 3.85
465 519 2.842496 TCCTGTAACGAGGAGAGGACTA 59.158 50.000 0.00 0.00 37.20 2.59
466 520 3.118334 TCCTGTAACGAGGAGAGGACTAG 60.118 52.174 0.00 0.00 37.20 2.57
467 521 3.207778 CTGTAACGAGGAGAGGACTAGG 58.792 54.545 0.00 0.00 0.00 3.02
468 522 2.842496 TGTAACGAGGAGAGGACTAGGA 59.158 50.000 0.00 0.00 0.00 2.94
469 523 2.423446 AACGAGGAGAGGACTAGGAC 57.577 55.000 0.00 0.00 0.00 3.85
470 524 1.287217 ACGAGGAGAGGACTAGGACA 58.713 55.000 0.00 0.00 0.00 4.02
471 525 1.065272 ACGAGGAGAGGACTAGGACAC 60.065 57.143 0.00 0.00 0.00 3.67
472 526 1.747898 CGAGGAGAGGACTAGGACACC 60.748 61.905 0.00 0.00 0.00 4.16
473 527 0.256464 AGGAGAGGACTAGGACACCG 59.744 60.000 0.00 0.00 0.00 4.94
474 528 0.255318 GGAGAGGACTAGGACACCGA 59.745 60.000 0.00 0.00 0.00 4.69
475 529 1.133730 GGAGAGGACTAGGACACCGAT 60.134 57.143 0.00 0.00 0.00 4.18
476 530 1.950909 GAGAGGACTAGGACACCGATG 59.049 57.143 0.00 0.00 0.00 3.84
477 531 1.285373 AGAGGACTAGGACACCGATGT 59.715 52.381 0.00 0.00 43.71 3.06
478 532 2.508716 AGAGGACTAGGACACCGATGTA 59.491 50.000 0.00 0.00 39.95 2.29
479 533 3.138653 AGAGGACTAGGACACCGATGTAT 59.861 47.826 0.00 0.00 39.95 2.29
480 534 4.350225 AGAGGACTAGGACACCGATGTATA 59.650 45.833 0.00 0.00 39.95 1.47
493 547 5.048013 CACCGATGTATATAGTCAGGAGCAA 60.048 44.000 0.00 0.00 0.00 3.91
505 559 2.236146 TCAGGAGCAACGTTACATCCAT 59.764 45.455 21.12 8.90 32.21 3.41
518 572 7.103641 ACGTTACATCCATGACTGACTTTTAT 58.896 34.615 0.00 0.00 0.00 1.40
525 579 5.939883 TCCATGACTGACTTTTATGGAGTTG 59.060 40.000 0.00 0.00 41.60 3.16
536 590 6.861055 ACTTTTATGGAGTTGCGTTTTACATG 59.139 34.615 0.00 0.00 0.00 3.21
537 591 5.950758 TTATGGAGTTGCGTTTTACATGT 57.049 34.783 2.69 2.69 0.00 3.21
538 592 4.846779 ATGGAGTTGCGTTTTACATGTT 57.153 36.364 2.30 0.00 0.00 2.71
539 593 4.640789 TGGAGTTGCGTTTTACATGTTT 57.359 36.364 2.30 0.00 0.00 2.83
541 595 4.336993 TGGAGTTGCGTTTTACATGTTTCT 59.663 37.500 2.30 0.00 0.00 2.52
543 597 6.205853 TGGAGTTGCGTTTTACATGTTTCTAT 59.794 34.615 2.30 0.00 0.00 1.98
544 598 6.523201 GGAGTTGCGTTTTACATGTTTCTATG 59.477 38.462 2.30 0.00 0.00 2.23
545 599 6.378582 AGTTGCGTTTTACATGTTTCTATGG 58.621 36.000 2.30 0.00 32.32 2.74
546 600 4.728534 TGCGTTTTACATGTTTCTATGGC 58.271 39.130 2.30 0.33 32.32 4.40
547 601 4.216472 TGCGTTTTACATGTTTCTATGGCA 59.784 37.500 2.30 3.15 32.32 4.92
548 602 5.157781 GCGTTTTACATGTTTCTATGGCAA 58.842 37.500 2.30 0.00 32.32 4.52
549 603 5.286082 GCGTTTTACATGTTTCTATGGCAAG 59.714 40.000 2.30 0.00 32.32 4.01
550 604 6.378582 CGTTTTACATGTTTCTATGGCAAGT 58.621 36.000 2.30 0.00 32.32 3.16
551 605 6.861055 CGTTTTACATGTTTCTATGGCAAGTT 59.139 34.615 2.30 0.00 32.32 2.66
552 606 7.381139 CGTTTTACATGTTTCTATGGCAAGTTT 59.619 33.333 2.30 0.00 32.32 2.66
553 607 9.040939 GTTTTACATGTTTCTATGGCAAGTTTT 57.959 29.630 2.30 0.00 32.32 2.43
554 608 8.586570 TTTACATGTTTCTATGGCAAGTTTTG 57.413 30.769 2.30 0.00 32.32 2.44
555 609 5.540911 ACATGTTTCTATGGCAAGTTTTGG 58.459 37.500 0.00 0.00 32.32 3.28
556 610 4.599047 TGTTTCTATGGCAAGTTTTGGG 57.401 40.909 0.00 0.00 0.00 4.12
557 611 4.219115 TGTTTCTATGGCAAGTTTTGGGA 58.781 39.130 0.00 0.00 0.00 4.37
558 612 4.651503 TGTTTCTATGGCAAGTTTTGGGAA 59.348 37.500 0.00 0.00 0.00 3.97
559 613 5.129485 TGTTTCTATGGCAAGTTTTGGGAAA 59.871 36.000 0.00 0.00 0.00 3.13
560 614 6.183361 TGTTTCTATGGCAAGTTTTGGGAAAT 60.183 34.615 0.00 0.00 0.00 2.17
561 615 5.404466 TCTATGGCAAGTTTTGGGAAATG 57.596 39.130 0.00 0.00 0.00 2.32
562 616 2.926778 TGGCAAGTTTTGGGAAATGG 57.073 45.000 0.00 0.00 0.00 3.16
563 617 2.402564 TGGCAAGTTTTGGGAAATGGA 58.597 42.857 0.00 0.00 0.00 3.41
564 618 2.368221 TGGCAAGTTTTGGGAAATGGAG 59.632 45.455 0.00 0.00 0.00 3.86
568 622 0.613260 GTTTTGGGAAATGGAGCCCC 59.387 55.000 0.00 0.00 44.03 5.80
588 642 1.812571 CCCCACACTTGAAATTCGGAG 59.187 52.381 0.00 0.00 0.00 4.63
594 648 4.511454 CACACTTGAAATTCGGAGTGAAGA 59.489 41.667 25.55 0.00 41.46 2.87
596 650 5.588648 ACACTTGAAATTCGGAGTGAAGAAA 59.411 36.000 25.55 0.00 41.46 2.52
603 657 3.570912 TCGGAGTGAAGAAAAAGGGTT 57.429 42.857 0.00 0.00 0.00 4.11
624 678 6.014584 GGGTTTGTAGGACTTTTCATTGGATT 60.015 38.462 0.00 0.00 0.00 3.01
627 681 6.817765 TGTAGGACTTTTCATTGGATTCAC 57.182 37.500 0.00 0.00 0.00 3.18
628 682 6.542821 TGTAGGACTTTTCATTGGATTCACT 58.457 36.000 0.00 0.00 0.00 3.41
643 697 9.645128 ATTGGATTCACTCATAAATTGTATCCA 57.355 29.630 5.37 5.37 37.74 3.41
650 704 8.708378 TCACTCATAAATTGTATCCACTCTGAT 58.292 33.333 0.00 0.00 0.00 2.90
661 715 8.918202 TGTATCCACTCTGATTTAAAACAAGT 57.082 30.769 0.00 4.20 0.00 3.16
664 718 7.259290 TCCACTCTGATTTAAAACAAGTGTC 57.741 36.000 23.09 7.48 32.69 3.67
666 720 6.238374 CCACTCTGATTTAAAACAAGTGTCGT 60.238 38.462 23.09 7.19 32.69 4.34
668 722 8.332464 CACTCTGATTTAAAACAAGTGTCGTAA 58.668 33.333 20.15 0.00 0.00 3.18
669 723 9.052759 ACTCTGATTTAAAACAAGTGTCGTAAT 57.947 29.630 10.33 0.00 0.00 1.89
701 755 9.349713 ACTAAAGTCCAAAATAAATGTCACAGA 57.650 29.630 0.00 0.00 0.00 3.41
721 775 9.667107 TCACAGATTTAAACTAATGTTAGGAGG 57.333 33.333 4.92 0.00 34.96 4.30
722 776 9.667107 CACAGATTTAAACTAATGTTAGGAGGA 57.333 33.333 4.92 0.00 34.96 3.71
728 782 9.662947 TTTAAACTAATGTTAGGAGGAAGTAGC 57.337 33.333 4.92 0.00 34.96 3.58
729 783 6.869206 AACTAATGTTAGGAGGAAGTAGCA 57.131 37.500 4.92 0.00 35.08 3.49
730 784 6.869206 ACTAATGTTAGGAGGAAGTAGCAA 57.131 37.500 4.92 0.00 35.08 3.91
731 785 7.439108 ACTAATGTTAGGAGGAAGTAGCAAT 57.561 36.000 4.92 0.00 35.08 3.56
732 786 7.862675 ACTAATGTTAGGAGGAAGTAGCAATT 58.137 34.615 4.92 0.00 35.08 2.32
733 787 8.329502 ACTAATGTTAGGAGGAAGTAGCAATTT 58.670 33.333 4.92 0.00 35.08 1.82
734 788 7.631717 AATGTTAGGAGGAAGTAGCAATTTC 57.368 36.000 0.00 0.00 0.00 2.17
735 789 5.175859 TGTTAGGAGGAAGTAGCAATTTCG 58.824 41.667 0.00 0.00 0.00 3.46
736 790 3.268023 AGGAGGAAGTAGCAATTTCGG 57.732 47.619 0.00 0.00 0.00 4.30
739 793 4.409247 AGGAGGAAGTAGCAATTTCGGTAT 59.591 41.667 0.00 0.00 0.00 2.73
741 795 5.927115 GGAGGAAGTAGCAATTTCGGTATAG 59.073 44.000 0.00 0.00 0.00 1.31
784 838 5.915758 TGGTGTATTTTTGTCATGCGTTTAC 59.084 36.000 0.00 0.00 0.00 2.01
796 850 3.048337 TGCGTTTACCGAAGATTTCCT 57.952 42.857 0.00 0.00 39.56 3.36
997 1052 0.327000 CCCACTCCCATCCTCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
1221 1276 3.917760 GACGAGGAGGATGGCCCG 61.918 72.222 0.00 0.00 40.87 6.13
1351 1406 4.746309 AGGCCATGGTGCGCACAT 62.746 61.111 38.60 26.63 0.00 3.21
1358 1424 1.094785 ATGGTGCGCACATTCTTACC 58.905 50.000 38.60 21.31 0.00 2.85
1368 1458 4.588278 GCACATTCTTACCGTTGCTAATC 58.412 43.478 0.00 0.00 0.00 1.75
1397 1487 1.338200 ACCAGTAGCTTCAAGCCTTCG 60.338 52.381 5.53 0.00 43.77 3.79
1446 1555 4.137543 GGACTCTGACAAGATTTTGGTGT 58.862 43.478 0.57 0.00 38.66 4.16
1498 1607 1.132262 CTTGTGCAAGTTTGACGGTGT 59.868 47.619 3.91 0.00 33.87 4.16
1505 1621 4.634883 TGCAAGTTTGACGGTGTTTACTAA 59.365 37.500 0.00 0.00 0.00 2.24
1513 1629 4.281435 TGACGGTGTTTACTAATGACCTGA 59.719 41.667 0.00 0.00 0.00 3.86
1514 1630 5.217978 ACGGTGTTTACTAATGACCTGAA 57.782 39.130 0.00 0.00 0.00 3.02
1518 1634 6.148811 CGGTGTTTACTAATGACCTGAATGTT 59.851 38.462 0.00 0.00 0.00 2.71
1519 1635 7.308348 CGGTGTTTACTAATGACCTGAATGTTT 60.308 37.037 0.00 0.00 0.00 2.83
1520 1636 8.021396 GGTGTTTACTAATGACCTGAATGTTTC 58.979 37.037 0.00 0.00 0.00 2.78
1522 1638 7.942341 TGTTTACTAATGACCTGAATGTTTCCT 59.058 33.333 0.00 0.00 0.00 3.36
1523 1639 8.451748 GTTTACTAATGACCTGAATGTTTCCTC 58.548 37.037 0.00 0.00 0.00 3.71
1526 1642 3.981071 TGACCTGAATGTTTCCTCGAT 57.019 42.857 0.00 0.00 0.00 3.59
1529 1645 4.003648 GACCTGAATGTTTCCTCGATGTT 58.996 43.478 0.00 0.00 0.00 2.71
1530 1646 4.398319 ACCTGAATGTTTCCTCGATGTTT 58.602 39.130 0.00 0.00 0.00 2.83
1532 1648 4.379813 CCTGAATGTTTCCTCGATGTTTGG 60.380 45.833 0.00 0.00 0.00 3.28
1533 1649 4.141287 TGAATGTTTCCTCGATGTTTGGT 58.859 39.130 0.00 0.00 0.00 3.67
1534 1650 4.215399 TGAATGTTTCCTCGATGTTTGGTC 59.785 41.667 0.00 0.00 0.00 4.02
1535 1651 2.139917 TGTTTCCTCGATGTTTGGTCG 58.860 47.619 0.00 0.00 40.30 4.79
1537 1653 1.790755 TTCCTCGATGTTTGGTCGTG 58.209 50.000 0.00 0.00 39.91 4.35
1583 1766 2.299013 GTGGAATTGAAGGTGGTTTCCC 59.701 50.000 0.00 0.00 35.94 3.97
1601 1784 1.067000 CCCGATGCCAAATTGCAAGAA 60.067 47.619 4.94 0.00 45.84 2.52
1602 1785 2.612471 CCCGATGCCAAATTGCAAGAAA 60.612 45.455 4.94 0.00 45.84 2.52
1603 1786 2.412770 CCGATGCCAAATTGCAAGAAAC 59.587 45.455 4.94 0.00 45.84 2.78
1604 1787 2.412770 CGATGCCAAATTGCAAGAAACC 59.587 45.455 4.94 0.00 45.84 3.27
1605 1788 2.996249 TGCCAAATTGCAAGAAACCA 57.004 40.000 4.94 0.00 38.56 3.67
1606 1789 2.836262 TGCCAAATTGCAAGAAACCAG 58.164 42.857 4.94 0.00 38.56 4.00
1607 1790 2.170187 TGCCAAATTGCAAGAAACCAGT 59.830 40.909 4.94 0.00 38.56 4.00
1608 1791 3.386078 TGCCAAATTGCAAGAAACCAGTA 59.614 39.130 4.94 0.00 38.56 2.74
1609 1792 3.989817 GCCAAATTGCAAGAAACCAGTAG 59.010 43.478 4.94 0.00 0.00 2.57
1610 1793 3.989817 CCAAATTGCAAGAAACCAGTAGC 59.010 43.478 4.94 0.00 0.00 3.58
1611 1794 4.262164 CCAAATTGCAAGAAACCAGTAGCT 60.262 41.667 4.94 0.00 0.00 3.32
1612 1795 4.510038 AATTGCAAGAAACCAGTAGCTG 57.490 40.909 4.94 0.00 0.00 4.24
1661 1844 3.305267 GCACCACAAATGCAGAATACACA 60.305 43.478 0.00 0.00 42.88 3.72
1684 1868 8.124823 CACATTGCTAGTAATTGGTGTGAATAG 58.875 37.037 15.77 0.11 38.29 1.73
1699 1883 0.035056 AATAGGCTGTGGTGGCTGTC 60.035 55.000 0.00 0.00 42.92 3.51
1721 1905 3.193691 CACTAGTGTCAGGGATTCGTCTT 59.806 47.826 15.06 0.00 0.00 3.01
1728 1912 1.201429 AGGGATTCGTCTTGTGGCCT 61.201 55.000 3.32 0.00 0.00 5.19
1729 1913 0.539986 GGGATTCGTCTTGTGGCCTA 59.460 55.000 3.32 0.00 0.00 3.93
1730 1914 1.141053 GGGATTCGTCTTGTGGCCTAT 59.859 52.381 3.32 0.00 0.00 2.57
1731 1915 2.484889 GGATTCGTCTTGTGGCCTATC 58.515 52.381 3.32 0.00 0.00 2.08
1732 1916 2.103263 GGATTCGTCTTGTGGCCTATCT 59.897 50.000 3.32 0.00 0.00 1.98
1733 1917 2.961526 TTCGTCTTGTGGCCTATCTC 57.038 50.000 3.32 0.00 0.00 2.75
1734 1918 0.738975 TCGTCTTGTGGCCTATCTCG 59.261 55.000 3.32 2.30 0.00 4.04
1735 1919 0.456221 CGTCTTGTGGCCTATCTCGT 59.544 55.000 3.32 0.00 0.00 4.18
1760 1947 4.780275 TTATTTGCTGCTTGTATGTGCA 57.220 36.364 0.00 0.00 37.63 4.57
1808 1998 5.991933 TGTTGGTGCCAAATATGTAATGT 57.008 34.783 5.09 0.00 37.70 2.71
1814 2004 5.358442 GGTGCCAAATATGTAATGTACACCA 59.642 40.000 0.00 0.00 42.23 4.17
1815 2005 6.459573 GGTGCCAAATATGTAATGTACACCAG 60.460 42.308 0.00 0.00 42.23 4.00
1816 2006 6.094881 GTGCCAAATATGTAATGTACACCAGT 59.905 38.462 0.00 0.00 42.23 4.00
1817 2007 7.281324 GTGCCAAATATGTAATGTACACCAGTA 59.719 37.037 0.00 0.00 42.23 2.74
1880 2070 7.990886 TGGGATCAATGGTACTAACTTATGAAC 59.009 37.037 0.00 0.00 0.00 3.18
1973 2163 4.015764 AGAAGGGTACTAGAAAGGTCGTC 58.984 47.826 0.00 0.00 0.00 4.20
2126 2316 3.480470 TGAGCTTAGAATAGCAATGGCC 58.520 45.455 0.00 0.00 43.68 5.36
2167 2357 4.529377 CCCACTTGGTAGTTTCTACAGGTA 59.471 45.833 8.78 0.00 30.26 3.08
2224 2417 7.041721 TGATCTTGTTGTACTATTGCTACCAG 58.958 38.462 0.00 0.00 0.00 4.00
2258 2451 5.589855 TGAACATTGTCTGACATCAAACTGT 59.410 36.000 11.86 6.16 0.00 3.55
2286 2479 3.442100 GATCATGCTGTTAGGCAAAAGC 58.558 45.455 5.28 5.28 45.68 3.51
2342 2535 2.633488 GTCAAAGATGGGACTACTGGC 58.367 52.381 0.00 0.00 0.00 4.85
2390 2583 1.081892 CACAGCGAACTATGCTTGCT 58.918 50.000 0.00 0.00 41.72 3.91
2411 2604 4.454847 GCTTACCAGGTTAGTTTCTTCACC 59.545 45.833 7.45 0.00 0.00 4.02
2414 2607 4.204799 ACCAGGTTAGTTTCTTCACCAAC 58.795 43.478 0.00 0.00 0.00 3.77
2452 2646 8.749026 TTTACAATAGTTGGTAAACTTGTCCA 57.251 30.769 0.00 0.00 44.47 4.02
2467 2661 7.953158 AACTTGTCCAGATTATGATGTATCG 57.047 36.000 0.00 0.00 0.00 2.92
2517 2712 0.034337 TGGGTACTTCGGAGTTGTGC 59.966 55.000 0.00 0.00 37.33 4.57
2529 2724 1.398390 GAGTTGTGCTAATGCCTTCCG 59.602 52.381 0.00 0.00 38.71 4.30
2531 2726 0.326595 TTGTGCTAATGCCTTCCGGA 59.673 50.000 0.00 0.00 38.71 5.14
2533 2728 1.017387 GTGCTAATGCCTTCCGGAAG 58.983 55.000 33.29 33.29 38.71 3.46
2537 2732 1.876156 CTAATGCCTTCCGGAAGATGC 59.124 52.381 39.78 33.57 40.79 3.91
2539 2734 0.184451 ATGCCTTCCGGAAGATGCAT 59.816 50.000 35.90 35.90 39.66 3.96
2565 2760 5.751243 TTCACTGTTTGGCTTCTTAAGAC 57.249 39.130 4.18 0.00 36.92 3.01
2610 2820 7.551262 TCTTATTTGAAGTACGTATGGCATTGT 59.449 33.333 4.78 7.82 0.00 2.71
2633 2843 9.904198 TTGTGAACATCCATCTTATATCAAAGA 57.096 29.630 0.00 0.00 39.71 2.52
2681 2891 7.652524 TTTGCTGGCCATTTATGTAGAAATA 57.347 32.000 5.51 0.00 0.00 1.40
2689 2899 6.998673 GCCATTTATGTAGAAATACTCCTGGT 59.001 38.462 0.00 0.00 0.00 4.00
2792 3002 6.995091 GGCAGAGATAGTATCCAAGTCAAATT 59.005 38.462 6.53 0.00 0.00 1.82
2950 3160 5.530915 CCACAGTGATTTTTGGTGAGACTAA 59.469 40.000 0.62 0.00 0.00 2.24
2957 3167 1.263356 TTGGTGAGACTAACCTCCGG 58.737 55.000 10.56 0.00 38.60 5.14
3008 3222 0.615331 ATCTCGTCCCAGTTGCACAT 59.385 50.000 0.00 0.00 0.00 3.21
3009 3223 0.037326 TCTCGTCCCAGTTGCACATC 60.037 55.000 0.00 0.00 0.00 3.06
3014 3228 1.067295 TCCCAGTTGCACATCCTCTT 58.933 50.000 0.00 0.00 0.00 2.85
3020 3234 2.636893 AGTTGCACATCCTCTTCAGTCT 59.363 45.455 0.00 0.00 0.00 3.24
3031 3245 7.232534 ACATCCTCTTCAGTCTATAAGTCATCC 59.767 40.741 0.00 0.00 0.00 3.51
3044 3258 8.781951 TCTATAAGTCATCCTCCATTTCCTTTT 58.218 33.333 0.00 0.00 0.00 2.27
3047 3261 9.942526 ATAAGTCATCCTCCATTTCCTTTTAAT 57.057 29.630 0.00 0.00 0.00 1.40
3062 3276 8.950007 TTCCTTTTAATTAACAAGAGGTCCAT 57.050 30.769 15.70 0.00 0.00 3.41
3064 3278 8.167392 TCCTTTTAATTAACAAGAGGTCCATGA 58.833 33.333 15.70 5.40 0.00 3.07
3065 3279 8.462016 CCTTTTAATTAACAAGAGGTCCATGAG 58.538 37.037 15.70 0.00 0.00 2.90
3068 3283 9.667107 TTTAATTAACAAGAGGTCCATGAGTAG 57.333 33.333 0.00 0.00 0.00 2.57
3083 3298 3.791320 TGAGTAGATCAGGGAAAGGTGT 58.209 45.455 0.00 0.00 32.77 4.16
3086 3301 2.206576 AGATCAGGGAAAGGTGTTGC 57.793 50.000 0.00 0.00 0.00 4.17
3087 3302 1.707427 AGATCAGGGAAAGGTGTTGCT 59.293 47.619 0.00 0.00 0.00 3.91
3103 3320 5.212934 GTGTTGCTTTTACTTGCTTCCTAC 58.787 41.667 0.00 0.00 0.00 3.18
3106 3323 3.072211 GCTTTTACTTGCTTCCTACGGT 58.928 45.455 0.00 0.00 0.00 4.83
3116 3333 1.548719 CTTCCTACGGTGGTGATGACA 59.451 52.381 0.00 0.00 0.00 3.58
3119 3336 1.207089 CCTACGGTGGTGATGACATGT 59.793 52.381 0.00 0.00 0.00 3.21
3121 3338 0.955428 ACGGTGGTGATGACATGTGC 60.955 55.000 1.15 0.00 0.00 4.57
3129 3346 1.832998 TGATGACATGTGCCTGCTCTA 59.167 47.619 1.15 0.00 0.00 2.43
3130 3347 2.159000 TGATGACATGTGCCTGCTCTAG 60.159 50.000 1.15 0.00 0.00 2.43
3134 3351 3.244526 TGACATGTGCCTGCTCTAGAAAA 60.245 43.478 1.15 0.00 0.00 2.29
3143 3360 4.213059 GCCTGCTCTAGAAAATGCTACATC 59.787 45.833 0.00 0.00 0.00 3.06
3156 3373 2.158914 TGCTACATCAGTGGGCTACATG 60.159 50.000 3.15 1.69 32.19 3.21
3157 3374 2.103094 GCTACATCAGTGGGCTACATGA 59.897 50.000 3.15 4.79 0.00 3.07
3158 3375 2.698855 ACATCAGTGGGCTACATGAC 57.301 50.000 3.15 0.00 0.00 3.06
3159 3376 1.908619 ACATCAGTGGGCTACATGACA 59.091 47.619 3.15 0.00 0.00 3.58
3160 3377 2.507058 ACATCAGTGGGCTACATGACAT 59.493 45.455 3.15 0.00 0.00 3.06
3161 3378 2.696989 TCAGTGGGCTACATGACATG 57.303 50.000 14.02 14.02 0.00 3.21
3162 3379 1.210234 TCAGTGGGCTACATGACATGG 59.790 52.381 19.39 4.01 33.60 3.66
3174 3404 6.422100 GCTACATGACATGGTAGTTCTATGTG 59.578 42.308 19.39 0.00 45.81 3.21
3175 3405 6.299805 ACATGACATGGTAGTTCTATGTGT 57.700 37.500 19.39 0.00 45.81 3.72
3176 3406 6.711277 ACATGACATGGTAGTTCTATGTGTT 58.289 36.000 19.39 0.00 45.81 3.32
3177 3407 6.595326 ACATGACATGGTAGTTCTATGTGTTG 59.405 38.462 19.39 4.13 45.81 3.33
3178 3408 6.353404 TGACATGGTAGTTCTATGTGTTGA 57.647 37.500 3.46 0.00 45.81 3.18
3179 3409 6.946340 TGACATGGTAGTTCTATGTGTTGAT 58.054 36.000 3.46 0.00 45.81 2.57
3180 3410 7.041721 TGACATGGTAGTTCTATGTGTTGATC 58.958 38.462 3.46 0.00 45.81 2.92
3181 3411 6.946340 ACATGGTAGTTCTATGTGTTGATCA 58.054 36.000 0.00 0.00 44.51 2.92
3182 3412 7.568349 ACATGGTAGTTCTATGTGTTGATCAT 58.432 34.615 0.00 0.00 44.51 2.45
3183 3413 7.496920 ACATGGTAGTTCTATGTGTTGATCATG 59.503 37.037 0.00 0.00 44.51 3.07
3184 3414 6.946340 TGGTAGTTCTATGTGTTGATCATGT 58.054 36.000 0.00 0.00 0.00 3.21
3185 3415 6.818142 TGGTAGTTCTATGTGTTGATCATGTG 59.182 38.462 0.00 0.00 0.00 3.21
3186 3416 7.041721 GGTAGTTCTATGTGTTGATCATGTGA 58.958 38.462 0.00 0.00 0.00 3.58
3187 3417 6.974932 AGTTCTATGTGTTGATCATGTGAC 57.025 37.500 0.00 0.00 0.00 3.67
3188 3418 6.705302 AGTTCTATGTGTTGATCATGTGACT 58.295 36.000 0.00 0.00 0.00 3.41
3189 3419 6.592994 AGTTCTATGTGTTGATCATGTGACTG 59.407 38.462 0.00 0.00 0.00 3.51
3190 3420 6.284891 TCTATGTGTTGATCATGTGACTGA 57.715 37.500 0.00 0.00 0.00 3.41
3191 3421 6.101997 TCTATGTGTTGATCATGTGACTGAC 58.898 40.000 0.00 0.00 0.00 3.51
3192 3422 4.070630 TGTGTTGATCATGTGACTGACA 57.929 40.909 0.00 0.00 39.53 3.58
3193 3423 4.644498 TGTGTTGATCATGTGACTGACAT 58.356 39.130 0.00 0.00 46.98 3.06
3194 3424 4.692155 TGTGTTGATCATGTGACTGACATC 59.308 41.667 0.00 0.00 43.96 3.06
3195 3425 4.692155 GTGTTGATCATGTGACTGACATCA 59.308 41.667 0.00 0.00 43.96 3.07
3196 3426 5.353400 GTGTTGATCATGTGACTGACATCAT 59.647 40.000 0.00 0.00 43.96 2.45
3197 3427 5.583457 TGTTGATCATGTGACTGACATCATC 59.417 40.000 0.00 0.00 43.96 2.92
3198 3428 5.347620 TGATCATGTGACTGACATCATCA 57.652 39.130 0.00 0.00 46.86 3.07
3199 3429 5.736813 TGATCATGTGACTGACATCATCAA 58.263 37.500 0.00 0.00 46.27 2.57
3200 3430 5.583457 TGATCATGTGACTGACATCATCAAC 59.417 40.000 0.00 0.00 46.27 3.18
3201 3431 4.897140 TCATGTGACTGACATCATCAACA 58.103 39.130 0.00 0.00 43.96 3.33
3202 3432 4.933400 TCATGTGACTGACATCATCAACAG 59.067 41.667 0.00 0.00 43.96 3.16
3203 3433 4.605640 TGTGACTGACATCATCAACAGA 57.394 40.909 0.00 0.00 36.69 3.41
3204 3434 4.563061 TGTGACTGACATCATCAACAGAG 58.437 43.478 0.00 0.00 36.69 3.35
3205 3435 3.370366 GTGACTGACATCATCAACAGAGC 59.630 47.826 0.00 0.00 36.69 4.09
3206 3436 2.935201 GACTGACATCATCAACAGAGCC 59.065 50.000 0.00 0.00 36.69 4.70
3207 3437 2.303890 ACTGACATCATCAACAGAGCCA 59.696 45.455 0.00 0.00 36.69 4.75
3208 3438 3.054582 ACTGACATCATCAACAGAGCCAT 60.055 43.478 0.00 0.00 36.69 4.40
3209 3439 4.162888 ACTGACATCATCAACAGAGCCATA 59.837 41.667 0.00 0.00 36.69 2.74
3210 3440 5.163227 ACTGACATCATCAACAGAGCCATAT 60.163 40.000 0.00 0.00 36.69 1.78
3211 3441 6.042437 ACTGACATCATCAACAGAGCCATATA 59.958 38.462 0.00 0.00 36.69 0.86
3212 3442 6.461640 TGACATCATCAACAGAGCCATATAG 58.538 40.000 0.00 0.00 33.02 1.31
3213 3443 6.042437 TGACATCATCAACAGAGCCATATAGT 59.958 38.462 0.00 0.00 33.02 2.12
3214 3444 6.835174 ACATCATCAACAGAGCCATATAGTT 58.165 36.000 0.00 0.00 0.00 2.24
3215 3445 6.933521 ACATCATCAACAGAGCCATATAGTTC 59.066 38.462 0.00 0.00 0.00 3.01
3216 3446 6.737720 TCATCAACAGAGCCATATAGTTCT 57.262 37.500 0.00 0.00 0.00 3.01
3217 3447 6.519382 TCATCAACAGAGCCATATAGTTCTG 58.481 40.000 12.25 12.25 42.07 3.02
3225 3455 6.368243 CAGAGCCATATAGTTCTGTATGCTTG 59.632 42.308 6.81 8.45 33.95 4.01
3244 3474 4.984161 GCTTGTTTGTGATTGCAAGTGTAT 59.016 37.500 4.94 0.00 40.09 2.29
3245 3475 5.463061 GCTTGTTTGTGATTGCAAGTGTATT 59.537 36.000 4.94 0.00 40.09 1.89
3256 3486 2.979813 GCAAGTGTATTTTTGCTCCACG 59.020 45.455 2.22 0.00 44.70 4.94
3257 3487 3.550030 GCAAGTGTATTTTTGCTCCACGT 60.550 43.478 2.22 0.00 44.70 4.49
3258 3488 4.606961 CAAGTGTATTTTTGCTCCACGTT 58.393 39.130 0.00 0.00 0.00 3.99
3259 3489 4.483476 AGTGTATTTTTGCTCCACGTTC 57.517 40.909 0.00 0.00 0.00 3.95
3260 3490 4.134563 AGTGTATTTTTGCTCCACGTTCT 58.865 39.130 0.00 0.00 0.00 3.01
3261 3491 4.213482 AGTGTATTTTTGCTCCACGTTCTC 59.787 41.667 0.00 0.00 0.00 2.87
3273 3503 5.449107 TCCACGTTCTCTATTATGGTAGC 57.551 43.478 0.00 0.00 0.00 3.58
3275 3505 4.982916 CCACGTTCTCTATTATGGTAGCAC 59.017 45.833 0.00 0.00 0.00 4.40
3277 3507 6.040247 CACGTTCTCTATTATGGTAGCACAA 58.960 40.000 0.00 0.00 0.00 3.33
3297 3527 3.692257 ATGCTCTGTATATCCCAGCAC 57.308 47.619 0.00 0.00 42.69 4.40
3298 3528 1.694150 TGCTCTGTATATCCCAGCACC 59.306 52.381 0.00 0.00 35.17 5.01
3329 3559 3.439129 CGGTCCTAAACATTTTCAGGGAC 59.561 47.826 0.00 0.00 40.44 4.46
3338 3568 3.206150 CATTTTCAGGGACATCGTAGGG 58.794 50.000 0.00 0.00 0.00 3.53
3354 3584 4.547532 CGTAGGGAACTATGCAGACATAC 58.452 47.826 0.00 0.00 46.56 2.39
3383 3613 3.294493 GCCAACGAAGCAAGGGCA 61.294 61.111 0.00 0.00 44.01 5.36
3416 3646 0.172352 CCTCAGAAGAGAGCACGGTC 59.828 60.000 0.00 0.00 44.98 4.79
3437 3667 2.095461 TCAGCTGCGAGATACTTGAGT 58.905 47.619 9.47 0.00 0.00 3.41
3476 3706 5.104776 AGTGTCTGTTACAGATGGTATGCAT 60.105 40.000 18.52 3.79 42.73 3.96
3482 3712 3.939740 ACAGATGGTATGCATGGTTCT 57.060 42.857 10.16 3.55 0.00 3.01
3698 3928 1.561542 AGGGTTAAGGATGCTGACAGG 59.438 52.381 4.26 0.00 0.00 4.00
3799 4029 2.971901 TTTTTCCTCCCCCTCAAGTC 57.028 50.000 0.00 0.00 0.00 3.01
3800 4030 1.073098 TTTTCCTCCCCCTCAAGTCC 58.927 55.000 0.00 0.00 0.00 3.85
3835 4067 1.814527 GGCGACGATGGGAACTACT 59.185 57.895 0.00 0.00 0.00 2.57
3837 4069 0.527817 GCGACGATGGGAACTACTGG 60.528 60.000 0.00 0.00 0.00 4.00
3948 4181 3.532641 AAACCAGCATCTCCTTCCTTT 57.467 42.857 0.00 0.00 0.00 3.11
4046 4279 5.994054 AGGCACATTCACTTGTATATAGCAG 59.006 40.000 0.00 0.00 0.00 4.24
4100 4333 0.036010 CTCGGCCTCTGTCACCATTT 60.036 55.000 0.00 0.00 0.00 2.32
4104 4337 2.019984 GGCCTCTGTCACCATTTCATC 58.980 52.381 0.00 0.00 0.00 2.92
4152 4399 5.550290 TGCTACATACATGATACATGGGTG 58.450 41.667 14.70 13.76 0.00 4.61
4265 4516 0.887836 AACTTCTTTCGGCGGAACCC 60.888 55.000 7.21 0.00 33.26 4.11
4325 4576 5.708948 TGCTTATCACCAAAACTGTAATGC 58.291 37.500 0.00 0.00 0.00 3.56
4326 4577 4.793216 GCTTATCACCAAAACTGTAATGCG 59.207 41.667 0.00 0.00 0.00 4.73
4327 4578 5.391523 GCTTATCACCAAAACTGTAATGCGA 60.392 40.000 0.00 0.00 0.00 5.10
4328 4579 6.677920 GCTTATCACCAAAACTGTAATGCGAT 60.678 38.462 0.00 0.00 0.00 4.58
4415 4672 7.982354 GGCGAAAGGTATAATATCTTGAGCTAT 59.018 37.037 0.00 0.00 34.56 2.97
4430 4687 5.042463 TGAGCTATACTAGTCAGAGCTGT 57.958 43.478 23.54 7.60 43.39 4.40
4455 4712 0.740737 AACCAAGTGCAGTTCAGTGC 59.259 50.000 3.08 0.00 44.27 4.40
4521 4781 5.924475 TGTTCTGCTAGCTTTGTTTCTAC 57.076 39.130 17.23 2.23 0.00 2.59
4522 4782 5.611374 TGTTCTGCTAGCTTTGTTTCTACT 58.389 37.500 17.23 0.00 0.00 2.57
4523 4783 6.755206 TGTTCTGCTAGCTTTGTTTCTACTA 58.245 36.000 17.23 0.00 0.00 1.82
4533 4793 8.446599 AGCTTTGTTTCTACTAGCTTGTTAAA 57.553 30.769 6.03 5.40 38.77 1.52
4614 4875 2.124695 GATCTGGGAACGCCACCC 60.125 66.667 0.00 0.00 46.87 4.61
4632 4893 3.818773 CACCCGACTGTAAAATGTTTCCT 59.181 43.478 0.00 0.00 0.00 3.36
4700 4961 3.936453 CGAGAGCTGTAGACTGTAGAGTT 59.064 47.826 0.00 0.00 30.16 3.01
4701 4962 4.201773 CGAGAGCTGTAGACTGTAGAGTTG 60.202 50.000 0.00 0.00 30.16 3.16
4702 4970 4.658063 AGAGCTGTAGACTGTAGAGTTGT 58.342 43.478 0.00 0.00 30.16 3.32
4765 5034 8.577164 AAGTTTTACATATATACCCCCTCTGT 57.423 34.615 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.311463 TGGGCGGACAAGAATTCAAAA 58.689 42.857 8.44 0.00 0.00 2.44
63 64 8.706322 ACCATTGACTAATAAAAGACCAAAGT 57.294 30.769 0.00 0.00 0.00 2.66
87 88 7.069578 TGTTAGGGTGTCCTCTCATCTATAAAC 59.930 40.741 0.00 0.00 43.66 2.01
98 99 4.543689 TCGATATTGTTAGGGTGTCCTCT 58.456 43.478 0.00 0.00 43.66 3.69
117 118 9.489084 AGATTCGATAATGGAATGTTAAATCGA 57.511 29.630 0.00 0.00 34.41 3.59
125 126 9.799106 AATTTAGGAGATTCGATAATGGAATGT 57.201 29.630 0.00 0.00 34.41 2.71
139 140 8.491045 TTTTCCTGTTTCCAATTTAGGAGATT 57.509 30.769 0.00 0.00 38.65 2.40
151 152 6.945938 TTTCGATTACTTTTCCTGTTTCCA 57.054 33.333 0.00 0.00 0.00 3.53
159 160 5.800438 GGCACAAGATTTCGATTACTTTTCC 59.200 40.000 0.00 0.00 0.00 3.13
186 187 1.947456 GAGTGAATTTCGTATGGCCCC 59.053 52.381 0.00 0.00 0.00 5.80
219 220 9.376075 TCTCTTCTTCACATTCAAACTATCATC 57.624 33.333 0.00 0.00 0.00 2.92
252 253 4.401202 GCTTGCCTACCTTTTATTTGGCTA 59.599 41.667 0.00 0.00 40.82 3.93
253 254 3.195610 GCTTGCCTACCTTTTATTTGGCT 59.804 43.478 0.00 0.00 40.82 4.75
254 255 3.056179 TGCTTGCCTACCTTTTATTTGGC 60.056 43.478 0.00 0.00 40.62 4.52
255 256 4.799564 TGCTTGCCTACCTTTTATTTGG 57.200 40.909 0.00 0.00 0.00 3.28
256 257 7.671495 AAATTGCTTGCCTACCTTTTATTTG 57.329 32.000 0.00 0.00 0.00 2.32
257 258 9.435688 CTAAAATTGCTTGCCTACCTTTTATTT 57.564 29.630 0.00 0.00 0.00 1.40
258 259 8.811994 TCTAAAATTGCTTGCCTACCTTTTATT 58.188 29.630 0.00 0.00 0.00 1.40
259 260 8.251026 GTCTAAAATTGCTTGCCTACCTTTTAT 58.749 33.333 0.00 0.00 0.00 1.40
260 261 7.450323 AGTCTAAAATTGCTTGCCTACCTTTTA 59.550 33.333 0.00 0.00 0.00 1.52
261 262 6.267699 AGTCTAAAATTGCTTGCCTACCTTTT 59.732 34.615 0.00 0.00 0.00 2.27
262 263 5.775195 AGTCTAAAATTGCTTGCCTACCTTT 59.225 36.000 0.00 0.00 0.00 3.11
263 264 5.325239 AGTCTAAAATTGCTTGCCTACCTT 58.675 37.500 0.00 0.00 0.00 3.50
264 265 4.923415 AGTCTAAAATTGCTTGCCTACCT 58.077 39.130 0.00 0.00 0.00 3.08
265 266 5.183140 TCAAGTCTAAAATTGCTTGCCTACC 59.817 40.000 0.00 0.00 38.44 3.18
266 267 6.254281 TCAAGTCTAAAATTGCTTGCCTAC 57.746 37.500 0.00 0.00 38.44 3.18
340 341 6.771749 ACCCAAAAATGATGATCAAAAAGCAA 59.228 30.769 0.00 0.00 0.00 3.91
349 350 7.039313 GGTAGGTTACCCAAAAATGATGATC 57.961 40.000 0.00 0.00 43.18 2.92
433 487 5.104941 TCCTCGTTACAGGATCACAAATCAT 60.105 40.000 0.00 0.00 37.68 2.45
434 488 4.221924 TCCTCGTTACAGGATCACAAATCA 59.778 41.667 0.00 0.00 37.68 2.57
435 489 4.755411 TCCTCGTTACAGGATCACAAATC 58.245 43.478 0.00 0.00 37.68 2.17
436 490 4.466370 TCTCCTCGTTACAGGATCACAAAT 59.534 41.667 0.00 0.00 42.02 2.32
437 491 3.830178 TCTCCTCGTTACAGGATCACAAA 59.170 43.478 0.00 0.00 42.02 2.83
440 494 2.359531 CCTCTCCTCGTTACAGGATCAC 59.640 54.545 0.00 0.00 42.02 3.06
441 495 2.241430 TCCTCTCCTCGTTACAGGATCA 59.759 50.000 0.00 0.00 42.02 2.92
442 496 2.619646 GTCCTCTCCTCGTTACAGGATC 59.380 54.545 4.51 0.00 42.02 3.36
443 497 2.242708 AGTCCTCTCCTCGTTACAGGAT 59.757 50.000 4.51 0.00 42.02 3.24
447 501 2.842496 TCCTAGTCCTCTCCTCGTTACA 59.158 50.000 0.00 0.00 0.00 2.41
448 502 3.205338 GTCCTAGTCCTCTCCTCGTTAC 58.795 54.545 0.00 0.00 0.00 2.50
449 503 2.842496 TGTCCTAGTCCTCTCCTCGTTA 59.158 50.000 0.00 0.00 0.00 3.18
450 504 1.634459 TGTCCTAGTCCTCTCCTCGTT 59.366 52.381 0.00 0.00 0.00 3.85
451 505 1.065272 GTGTCCTAGTCCTCTCCTCGT 60.065 57.143 0.00 0.00 0.00 4.18
452 506 1.670791 GTGTCCTAGTCCTCTCCTCG 58.329 60.000 0.00 0.00 0.00 4.63
453 507 1.747898 CGGTGTCCTAGTCCTCTCCTC 60.748 61.905 0.00 0.00 0.00 3.71
454 508 0.256464 CGGTGTCCTAGTCCTCTCCT 59.744 60.000 0.00 0.00 0.00 3.69
455 509 0.255318 TCGGTGTCCTAGTCCTCTCC 59.745 60.000 0.00 0.00 0.00 3.71
456 510 1.950909 CATCGGTGTCCTAGTCCTCTC 59.049 57.143 0.00 0.00 0.00 3.20
457 511 1.285373 ACATCGGTGTCCTAGTCCTCT 59.715 52.381 0.00 0.00 31.41 3.69
458 512 1.765230 ACATCGGTGTCCTAGTCCTC 58.235 55.000 0.00 0.00 31.41 3.71
459 513 3.596940 ATACATCGGTGTCCTAGTCCT 57.403 47.619 3.56 0.00 39.77 3.85
460 514 6.179040 ACTATATACATCGGTGTCCTAGTCC 58.821 44.000 3.56 0.00 39.77 3.85
461 515 6.877855 TGACTATATACATCGGTGTCCTAGTC 59.122 42.308 24.45 24.45 40.16 2.59
462 516 6.776744 TGACTATATACATCGGTGTCCTAGT 58.223 40.000 3.56 10.89 39.77 2.57
463 517 6.316640 CCTGACTATATACATCGGTGTCCTAG 59.683 46.154 3.56 7.59 39.77 3.02
464 518 6.013119 TCCTGACTATATACATCGGTGTCCTA 60.013 42.308 3.56 0.00 39.77 2.94
465 519 5.010933 CCTGACTATATACATCGGTGTCCT 58.989 45.833 3.56 0.00 39.77 3.85
466 520 5.008331 TCCTGACTATATACATCGGTGTCC 58.992 45.833 3.56 0.00 39.77 4.02
467 521 5.392165 GCTCCTGACTATATACATCGGTGTC 60.392 48.000 3.56 0.00 39.77 3.67
468 522 4.459685 GCTCCTGACTATATACATCGGTGT 59.540 45.833 6.54 6.54 42.39 4.16
469 523 4.459337 TGCTCCTGACTATATACATCGGTG 59.541 45.833 0.00 0.00 0.00 4.94
470 524 4.663334 TGCTCCTGACTATATACATCGGT 58.337 43.478 0.00 0.00 0.00 4.69
471 525 5.403246 GTTGCTCCTGACTATATACATCGG 58.597 45.833 0.00 0.00 0.00 4.18
472 526 5.089411 CGTTGCTCCTGACTATATACATCG 58.911 45.833 0.00 0.00 0.00 3.84
473 527 6.015027 ACGTTGCTCCTGACTATATACATC 57.985 41.667 0.00 0.00 0.00 3.06
474 528 6.406692 AACGTTGCTCCTGACTATATACAT 57.593 37.500 0.00 0.00 0.00 2.29
475 529 5.847111 AACGTTGCTCCTGACTATATACA 57.153 39.130 0.00 0.00 0.00 2.29
476 530 6.732154 TGTAACGTTGCTCCTGACTATATAC 58.268 40.000 17.37 0.00 0.00 1.47
477 531 6.947644 TGTAACGTTGCTCCTGACTATATA 57.052 37.500 17.37 0.00 0.00 0.86
478 532 5.847111 TGTAACGTTGCTCCTGACTATAT 57.153 39.130 17.37 0.00 0.00 0.86
479 533 5.221185 GGATGTAACGTTGCTCCTGACTATA 60.221 44.000 17.37 0.00 0.00 1.31
480 534 4.441634 GGATGTAACGTTGCTCCTGACTAT 60.442 45.833 17.37 0.00 0.00 2.12
493 547 4.537135 AAGTCAGTCATGGATGTAACGT 57.463 40.909 0.00 0.00 0.00 3.99
505 559 3.745975 CGCAACTCCATAAAAGTCAGTCA 59.254 43.478 0.00 0.00 0.00 3.41
518 572 4.336993 AGAAACATGTAAAACGCAACTCCA 59.663 37.500 0.00 0.00 0.00 3.86
525 579 4.728534 TGCCATAGAAACATGTAAAACGC 58.271 39.130 0.00 0.00 0.00 4.84
536 590 4.864704 TCCCAAAACTTGCCATAGAAAC 57.135 40.909 0.00 0.00 0.00 2.78
537 591 5.878406 TTTCCCAAAACTTGCCATAGAAA 57.122 34.783 0.00 0.00 0.00 2.52
538 592 5.279910 CCATTTCCCAAAACTTGCCATAGAA 60.280 40.000 0.00 0.00 0.00 2.10
539 593 4.222588 CCATTTCCCAAAACTTGCCATAGA 59.777 41.667 0.00 0.00 0.00 1.98
541 595 4.163427 TCCATTTCCCAAAACTTGCCATA 58.837 39.130 0.00 0.00 0.00 2.74
543 597 2.368221 CTCCATTTCCCAAAACTTGCCA 59.632 45.455 0.00 0.00 0.00 4.92
544 598 2.871637 GCTCCATTTCCCAAAACTTGCC 60.872 50.000 0.00 0.00 0.00 4.52
545 599 2.416747 GCTCCATTTCCCAAAACTTGC 58.583 47.619 0.00 0.00 0.00 4.01
546 600 2.289631 GGGCTCCATTTCCCAAAACTTG 60.290 50.000 0.00 0.00 42.18 3.16
547 601 1.977854 GGGCTCCATTTCCCAAAACTT 59.022 47.619 0.00 0.00 42.18 2.66
548 602 1.644509 GGGCTCCATTTCCCAAAACT 58.355 50.000 0.00 0.00 42.18 2.66
549 603 0.613260 GGGGCTCCATTTCCCAAAAC 59.387 55.000 0.00 0.00 44.43 2.43
550 604 0.546507 GGGGGCTCCATTTCCCAAAA 60.547 55.000 4.16 0.00 44.43 2.44
551 605 1.080170 GGGGGCTCCATTTCCCAAA 59.920 57.895 4.16 0.00 44.43 3.28
552 606 2.777146 GGGGGCTCCATTTCCCAA 59.223 61.111 4.16 0.00 44.43 4.12
568 622 1.812571 CTCCGAATTTCAAGTGTGGGG 59.187 52.381 0.00 0.00 0.00 4.96
570 624 3.138304 TCACTCCGAATTTCAAGTGTGG 58.862 45.455 20.07 4.75 40.01 4.17
588 642 5.593095 AGTCCTACAAACCCTTTTTCTTCAC 59.407 40.000 0.00 0.00 0.00 3.18
594 648 6.860790 TGAAAAGTCCTACAAACCCTTTTT 57.139 33.333 0.00 0.00 35.96 1.94
596 650 6.183360 CCAATGAAAAGTCCTACAAACCCTTT 60.183 38.462 0.00 0.00 0.00 3.11
603 657 7.004086 AGTGAATCCAATGAAAAGTCCTACAA 58.996 34.615 0.00 0.00 0.00 2.41
640 694 6.018262 CGACACTTGTTTTAAATCAGAGTGGA 60.018 38.462 25.23 6.37 37.82 4.02
643 697 6.920569 ACGACACTTGTTTTAAATCAGAGT 57.079 33.333 0.00 4.46 0.00 3.24
705 759 7.253905 TGCTACTTCCTCCTAACATTAGTTT 57.746 36.000 0.00 0.00 39.15 2.66
712 766 5.175859 CGAAATTGCTACTTCCTCCTAACA 58.824 41.667 0.00 0.00 0.00 2.41
713 767 4.571176 CCGAAATTGCTACTTCCTCCTAAC 59.429 45.833 0.00 0.00 0.00 2.34
716 770 2.572104 ACCGAAATTGCTACTTCCTCCT 59.428 45.455 0.00 0.00 0.00 3.69
723 777 9.614792 AGAAAAATCTATACCGAAATTGCTACT 57.385 29.630 0.00 0.00 0.00 2.57
762 816 5.058734 CGGTAAACGCATGACAAAAATACAC 59.941 40.000 0.00 0.00 34.82 2.90
765 819 5.608676 TCGGTAAACGCATGACAAAAATA 57.391 34.783 0.00 0.00 43.86 1.40
772 826 4.331962 GAAATCTTCGGTAAACGCATGAC 58.668 43.478 0.00 0.00 43.86 3.06
784 838 6.836577 CTAGCTTTTCTAGGAAATCTTCGG 57.163 41.667 5.21 0.00 40.85 4.30
796 850 3.519510 ACCACATGCTCCTAGCTTTTCTA 59.480 43.478 0.00 0.00 42.97 2.10
895 950 2.875684 GAAGAGGACGTGGAGCTCGC 62.876 65.000 7.83 2.06 0.00 5.03
974 1029 0.762461 GGAGGATGGGAGTGGGAGAG 60.762 65.000 0.00 0.00 0.00 3.20
975 1030 1.231751 AGGAGGATGGGAGTGGGAGA 61.232 60.000 0.00 0.00 0.00 3.71
976 1031 0.762461 GAGGAGGATGGGAGTGGGAG 60.762 65.000 0.00 0.00 0.00 4.30
1158 1213 1.739338 CGTCCGAGAATCCTCCCAGG 61.739 65.000 0.00 0.00 36.04 4.45
1159 1214 1.736586 CGTCCGAGAATCCTCCCAG 59.263 63.158 0.00 0.00 36.04 4.45
1182 1237 1.446099 GTCGTCGCTGGCATCTTCA 60.446 57.895 0.00 0.00 0.00 3.02
1259 1314 1.983196 CTCGATGACGTCCTCGCACT 61.983 60.000 30.57 1.72 41.18 4.40
1351 1406 3.932822 TGCAGATTAGCAACGGTAAGAA 58.067 40.909 0.00 0.00 42.46 2.52
1368 1458 3.076621 TGAAGCTACTGGTTGATTGCAG 58.923 45.455 0.00 0.00 33.64 4.41
1397 1487 3.555956 CAGTCAATGCCCTACGTTATGTC 59.444 47.826 0.00 0.00 0.00 3.06
1495 1604 8.021396 GGAAACATTCAGGTCATTAGTAAACAC 58.979 37.037 0.00 0.00 0.00 3.32
1498 1607 7.333423 CGAGGAAACATTCAGGTCATTAGTAAA 59.667 37.037 0.00 0.00 0.00 2.01
1505 1621 3.981071 TCGAGGAAACATTCAGGTCAT 57.019 42.857 0.00 0.00 0.00 3.06
1513 1629 3.188460 CGACCAAACATCGAGGAAACATT 59.812 43.478 3.06 0.00 42.25 2.71
1514 1630 2.742053 CGACCAAACATCGAGGAAACAT 59.258 45.455 3.06 0.00 42.25 2.71
1518 1634 1.790755 CACGACCAAACATCGAGGAA 58.209 50.000 3.06 0.00 42.25 3.36
1519 1635 0.669318 GCACGACCAAACATCGAGGA 60.669 55.000 3.06 0.00 42.25 3.71
1520 1636 0.670546 AGCACGACCAAACATCGAGG 60.671 55.000 0.00 0.00 42.25 4.63
1522 1638 1.271379 AGTAGCACGACCAAACATCGA 59.729 47.619 0.78 0.00 42.25 3.59
1523 1639 1.710013 AGTAGCACGACCAAACATCG 58.290 50.000 0.00 0.00 45.17 3.84
1526 1642 5.726397 ACAATATAGTAGCACGACCAAACA 58.274 37.500 0.00 0.00 0.00 2.83
1529 1645 6.636705 AGAAACAATATAGTAGCACGACCAA 58.363 36.000 0.00 0.00 0.00 3.67
1530 1646 6.216801 AGAAACAATATAGTAGCACGACCA 57.783 37.500 0.00 0.00 0.00 4.02
1532 1648 8.853469 ACTTAGAAACAATATAGTAGCACGAC 57.147 34.615 0.00 0.00 0.00 4.34
1583 1766 2.412770 GGTTTCTTGCAATTTGGCATCG 59.587 45.455 0.00 0.00 44.48 3.84
1604 1787 4.853924 ATGTTTGTTTTCCCAGCTACTG 57.146 40.909 0.00 0.00 0.00 2.74
1605 1788 4.892934 TCAATGTTTGTTTTCCCAGCTACT 59.107 37.500 0.00 0.00 0.00 2.57
1606 1789 4.982295 GTCAATGTTTGTTTTCCCAGCTAC 59.018 41.667 0.00 0.00 0.00 3.58
1607 1790 4.038642 GGTCAATGTTTGTTTTCCCAGCTA 59.961 41.667 0.00 0.00 0.00 3.32
1608 1791 3.181466 GGTCAATGTTTGTTTTCCCAGCT 60.181 43.478 0.00 0.00 0.00 4.24
1609 1792 3.130633 GGTCAATGTTTGTTTTCCCAGC 58.869 45.455 0.00 0.00 0.00 4.85
1610 1793 3.494223 GGGGTCAATGTTTGTTTTCCCAG 60.494 47.826 0.00 0.00 35.77 4.45
1611 1794 2.436173 GGGGTCAATGTTTGTTTTCCCA 59.564 45.455 0.00 0.00 35.77 4.37
1612 1795 2.703536 AGGGGTCAATGTTTGTTTTCCC 59.296 45.455 0.00 0.00 0.00 3.97
1613 1796 4.377021 GAAGGGGTCAATGTTTGTTTTCC 58.623 43.478 0.00 0.00 0.00 3.13
1614 1797 4.141824 TGGAAGGGGTCAATGTTTGTTTTC 60.142 41.667 0.00 0.00 0.00 2.29
1615 1798 3.777522 TGGAAGGGGTCAATGTTTGTTTT 59.222 39.130 0.00 0.00 0.00 2.43
1616 1799 3.379452 TGGAAGGGGTCAATGTTTGTTT 58.621 40.909 0.00 0.00 0.00 2.83
1617 1800 3.039252 TGGAAGGGGTCAATGTTTGTT 57.961 42.857 0.00 0.00 0.00 2.83
1618 1801 2.765689 TGGAAGGGGTCAATGTTTGT 57.234 45.000 0.00 0.00 0.00 2.83
1619 1802 2.354003 GCATGGAAGGGGTCAATGTTTG 60.354 50.000 0.00 0.00 39.61 2.93
1620 1803 1.901833 GCATGGAAGGGGTCAATGTTT 59.098 47.619 0.00 0.00 39.61 2.83
1661 1844 6.263168 GCCTATTCACACCAATTACTAGCAAT 59.737 38.462 0.00 0.00 0.00 3.56
1684 1868 2.111999 TAGTGACAGCCACCACAGCC 62.112 60.000 0.00 0.00 46.87 4.85
1699 1883 2.755655 AGACGAATCCCTGACACTAGTG 59.244 50.000 21.44 21.44 0.00 2.74
1721 1905 4.955811 ATAATCAACGAGATAGGCCACA 57.044 40.909 5.01 0.00 35.39 4.17
1728 1912 6.316140 ACAAGCAGCAAATAATCAACGAGATA 59.684 34.615 0.00 0.00 35.39 1.98
1729 1913 5.124457 ACAAGCAGCAAATAATCAACGAGAT 59.876 36.000 0.00 0.00 39.09 2.75
1730 1914 4.455533 ACAAGCAGCAAATAATCAACGAGA 59.544 37.500 0.00 0.00 0.00 4.04
1731 1915 4.726416 ACAAGCAGCAAATAATCAACGAG 58.274 39.130 0.00 0.00 0.00 4.18
1732 1916 4.764679 ACAAGCAGCAAATAATCAACGA 57.235 36.364 0.00 0.00 0.00 3.85
1733 1917 6.021232 CACATACAAGCAGCAAATAATCAACG 60.021 38.462 0.00 0.00 0.00 4.10
1734 1918 6.237648 GCACATACAAGCAGCAAATAATCAAC 60.238 38.462 0.00 0.00 0.00 3.18
1735 1919 5.806502 GCACATACAAGCAGCAAATAATCAA 59.193 36.000 0.00 0.00 0.00 2.57
1760 1947 9.906660 AACACATGACGAATAAATTGTATTTGT 57.093 25.926 0.00 0.00 35.01 2.83
1776 1963 0.317770 GGCACCAACAACACATGACG 60.318 55.000 0.00 0.00 0.00 4.35
1808 1998 4.976864 TGTCTGTACTCTGTACTGGTGTA 58.023 43.478 12.45 2.02 0.00 2.90
1814 2004 6.116806 AGATCGAATGTCTGTACTCTGTACT 58.883 40.000 8.94 0.00 0.00 2.73
1815 2005 6.366315 AGATCGAATGTCTGTACTCTGTAC 57.634 41.667 0.00 1.33 0.00 2.90
1816 2006 8.678593 AATAGATCGAATGTCTGTACTCTGTA 57.321 34.615 0.00 0.00 0.00 2.74
1817 2007 7.575414 AATAGATCGAATGTCTGTACTCTGT 57.425 36.000 0.00 0.00 0.00 3.41
1818 2008 7.380870 CCAAATAGATCGAATGTCTGTACTCTG 59.619 40.741 0.00 0.00 0.00 3.35
1819 2009 7.285629 TCCAAATAGATCGAATGTCTGTACTCT 59.714 37.037 0.00 0.00 0.00 3.24
1820 2010 7.426410 TCCAAATAGATCGAATGTCTGTACTC 58.574 38.462 0.00 0.00 0.00 2.59
1880 2070 4.215399 TCAACCTATTTGAGCAAGAAACCG 59.785 41.667 0.00 0.00 39.45 4.44
1973 2163 0.543749 GTCCCCTCTCCTCATGGTTG 59.456 60.000 0.00 0.00 34.23 3.77
2046 2236 1.444119 GCCACAAGCGAGTTGGACAA 61.444 55.000 3.35 0.00 40.90 3.18
2126 2316 4.624364 TCACTGCCCACACTGCCG 62.624 66.667 0.00 0.00 0.00 5.69
2224 2417 5.915196 GTCAGACAATGTTCAAAAGCCTTAC 59.085 40.000 0.00 0.00 0.00 2.34
2258 2451 3.193267 GCCTAACAGCATGATCCAAACAA 59.807 43.478 0.00 0.00 39.69 2.83
2390 2583 5.633655 TGGTGAAGAAACTAACCTGGTAA 57.366 39.130 0.00 0.00 33.65 2.85
2478 2672 9.609346 GTACCCAAAGACTAAAGAGCATATAAA 57.391 33.333 0.00 0.00 0.00 1.40
2486 2681 5.047519 TCCGAAGTACCCAAAGACTAAAGAG 60.048 44.000 0.00 0.00 0.00 2.85
2493 2688 3.064931 CAACTCCGAAGTACCCAAAGAC 58.935 50.000 0.00 0.00 33.48 3.01
2529 2724 4.978083 ACAGTGAATTGATGCATCTTCC 57.022 40.909 26.32 15.42 0.00 3.46
2531 2726 5.475719 CCAAACAGTGAATTGATGCATCTT 58.524 37.500 26.32 14.10 0.00 2.40
2533 2728 3.615496 GCCAAACAGTGAATTGATGCATC 59.385 43.478 20.14 20.14 0.00 3.91
2537 2732 5.130292 AGAAGCCAAACAGTGAATTGATG 57.870 39.130 12.83 1.93 0.00 3.07
2539 2734 6.545666 TCTTAAGAAGCCAAACAGTGAATTGA 59.454 34.615 1.68 0.00 0.00 2.57
2583 2791 8.559536 CAATGCCATACGTACTTCAAATAAGAT 58.440 33.333 0.00 0.00 0.00 2.40
2598 2806 2.682352 TGGATGTTCACAATGCCATACG 59.318 45.455 0.00 0.00 0.00 3.06
2603 2813 5.779529 ATAAGATGGATGTTCACAATGCC 57.220 39.130 0.00 0.00 0.00 4.40
2661 2871 7.173907 CAGGAGTATTTCTACATAAATGGCCAG 59.826 40.741 13.05 0.00 31.63 4.85
2681 2891 6.344232 AGAGAATAAGGTAGTACCAGGAGT 57.656 41.667 21.49 5.04 41.95 3.85
2689 2899 8.958060 AGGCATCATTAGAGAATAAGGTAGTA 57.042 34.615 0.00 0.00 0.00 1.82
2737 2947 5.179368 TGAATCGTAAGCCAAAGTTGAAGAG 59.821 40.000 0.00 0.00 37.18 2.85
2792 3002 5.216665 AGGTACCCTTCCACTATCAGTAA 57.783 43.478 8.74 0.00 0.00 2.24
2815 3025 9.677567 GCTTCAATTGTATGACTAAACTCAAAA 57.322 29.630 5.13 0.00 0.00 2.44
2818 3028 6.939730 TGGCTTCAATTGTATGACTAAACTCA 59.060 34.615 5.13 0.00 0.00 3.41
2957 3167 2.033424 GCCATAGAAACAGGAAATCGCC 59.967 50.000 0.00 0.00 0.00 5.54
3008 3222 6.916909 AGGATGACTTATAGACTGAAGAGGA 58.083 40.000 6.07 0.00 0.00 3.71
3009 3223 6.208599 GGAGGATGACTTATAGACTGAAGAGG 59.791 46.154 6.07 0.00 0.00 3.69
3014 3228 7.015682 GGAAATGGAGGATGACTTATAGACTGA 59.984 40.741 0.00 0.00 0.00 3.41
3031 3245 9.860898 CCTCTTGTTAATTAAAAGGAAATGGAG 57.139 33.333 0.00 0.00 0.00 3.86
3044 3258 8.603898 TCTACTCATGGACCTCTTGTTAATTA 57.396 34.615 0.00 0.00 0.00 1.40
3047 3261 6.667848 TGATCTACTCATGGACCTCTTGTTAA 59.332 38.462 0.00 0.00 0.00 2.01
3062 3276 3.791320 ACACCTTTCCCTGATCTACTCA 58.209 45.455 0.00 0.00 0.00 3.41
3064 3278 3.307762 GCAACACCTTTCCCTGATCTACT 60.308 47.826 0.00 0.00 0.00 2.57
3065 3279 3.010420 GCAACACCTTTCCCTGATCTAC 58.990 50.000 0.00 0.00 0.00 2.59
3068 3283 2.206576 AGCAACACCTTTCCCTGATC 57.793 50.000 0.00 0.00 0.00 2.92
3075 3290 4.682787 AGCAAGTAAAAGCAACACCTTTC 58.317 39.130 0.00 0.00 34.12 2.62
3079 3294 3.068165 AGGAAGCAAGTAAAAGCAACACC 59.932 43.478 0.00 0.00 0.00 4.16
3081 3296 4.024387 CGTAGGAAGCAAGTAAAAGCAACA 60.024 41.667 0.00 0.00 0.00 3.33
3083 3298 4.742438 CGTAGGAAGCAAGTAAAAGCAA 57.258 40.909 0.00 0.00 0.00 3.91
3103 3320 1.647545 GGCACATGTCATCACCACCG 61.648 60.000 0.00 0.00 0.00 4.94
3106 3323 0.961857 GCAGGCACATGTCATCACCA 60.962 55.000 0.00 0.00 0.00 4.17
3116 3333 2.686915 GCATTTTCTAGAGCAGGCACAT 59.313 45.455 5.31 0.00 0.00 3.21
3119 3336 2.795231 AGCATTTTCTAGAGCAGGCA 57.205 45.000 11.20 0.00 0.00 4.75
3121 3338 5.363101 TGATGTAGCATTTTCTAGAGCAGG 58.637 41.667 4.70 0.00 0.00 4.85
3129 3346 3.019564 GCCCACTGATGTAGCATTTTCT 58.980 45.455 0.00 0.00 0.00 2.52
3130 3347 3.019564 AGCCCACTGATGTAGCATTTTC 58.980 45.455 0.00 0.00 0.00 2.29
3134 3351 2.118679 TGTAGCCCACTGATGTAGCAT 58.881 47.619 0.00 0.00 0.00 3.79
3143 3360 1.065199 ACCATGTCATGTAGCCCACTG 60.065 52.381 11.84 0.00 0.00 3.66
3156 3373 7.041721 TGATCAACACATAGAACTACCATGTC 58.958 38.462 0.00 0.00 30.59 3.06
3157 3374 6.946340 TGATCAACACATAGAACTACCATGT 58.054 36.000 0.00 0.00 33.22 3.21
3158 3375 7.496920 ACATGATCAACACATAGAACTACCATG 59.503 37.037 0.00 0.00 33.52 3.66
3159 3376 7.496920 CACATGATCAACACATAGAACTACCAT 59.503 37.037 0.00 0.00 0.00 3.55
3160 3377 6.818142 CACATGATCAACACATAGAACTACCA 59.182 38.462 0.00 0.00 0.00 3.25
3161 3378 7.010552 GTCACATGATCAACACATAGAACTACC 59.989 40.741 0.00 0.00 0.00 3.18
3162 3379 7.761704 AGTCACATGATCAACACATAGAACTAC 59.238 37.037 0.00 0.00 0.00 2.73
3178 3408 5.493809 TGTTGATGATGTCAGTCACATGAT 58.506 37.500 0.00 0.00 46.53 2.45
3179 3409 4.897140 TGTTGATGATGTCAGTCACATGA 58.103 39.130 0.00 0.00 46.53 3.07
3180 3410 4.933400 TCTGTTGATGATGTCAGTCACATG 59.067 41.667 0.00 0.00 46.53 3.21
3182 3412 4.563061 CTCTGTTGATGATGTCAGTCACA 58.437 43.478 0.00 0.00 38.29 3.58
3183 3413 3.370366 GCTCTGTTGATGATGTCAGTCAC 59.630 47.826 0.00 0.00 38.29 3.67
3184 3414 3.593096 GCTCTGTTGATGATGTCAGTCA 58.407 45.455 0.00 0.00 38.29 3.41
3185 3415 2.935201 GGCTCTGTTGATGATGTCAGTC 59.065 50.000 0.00 0.00 38.29 3.51
3186 3416 2.303890 TGGCTCTGTTGATGATGTCAGT 59.696 45.455 0.00 0.00 38.29 3.41
3187 3417 2.981898 TGGCTCTGTTGATGATGTCAG 58.018 47.619 0.00 0.00 38.29 3.51
3188 3418 3.639672 ATGGCTCTGTTGATGATGTCA 57.360 42.857 0.00 0.00 34.25 3.58
3189 3419 6.462500 ACTATATGGCTCTGTTGATGATGTC 58.538 40.000 0.00 0.00 0.00 3.06
3190 3420 6.430962 ACTATATGGCTCTGTTGATGATGT 57.569 37.500 0.00 0.00 0.00 3.06
3191 3421 7.117956 CAGAACTATATGGCTCTGTTGATGATG 59.882 40.741 10.47 0.00 32.38 3.07
3192 3422 7.160049 CAGAACTATATGGCTCTGTTGATGAT 58.840 38.462 10.47 0.00 32.38 2.45
3193 3423 6.098838 ACAGAACTATATGGCTCTGTTGATGA 59.901 38.462 16.79 0.00 44.71 2.92
3194 3424 6.286758 ACAGAACTATATGGCTCTGTTGATG 58.713 40.000 16.79 0.00 44.71 3.07
3195 3425 6.491714 ACAGAACTATATGGCTCTGTTGAT 57.508 37.500 16.79 0.00 44.71 2.57
3196 3426 5.939764 ACAGAACTATATGGCTCTGTTGA 57.060 39.130 16.79 0.00 44.71 3.18
3197 3427 6.146837 GCATACAGAACTATATGGCTCTGTTG 59.853 42.308 24.54 21.25 44.71 3.33
3198 3428 6.042552 AGCATACAGAACTATATGGCTCTGTT 59.957 38.462 24.54 13.11 44.71 3.16
3200 3430 6.035368 AGCATACAGAACTATATGGCTCTG 57.965 41.667 15.63 15.63 40.92 3.35
3201 3431 6.042552 ACAAGCATACAGAACTATATGGCTCT 59.957 38.462 2.95 0.00 30.75 4.09
3202 3432 6.226787 ACAAGCATACAGAACTATATGGCTC 58.773 40.000 2.95 0.00 30.75 4.70
3203 3433 6.179906 ACAAGCATACAGAACTATATGGCT 57.820 37.500 2.95 0.00 30.75 4.75
3204 3434 6.867662 AACAAGCATACAGAACTATATGGC 57.132 37.500 2.95 0.00 30.75 4.40
3205 3435 8.124823 CACAAACAAGCATACAGAACTATATGG 58.875 37.037 2.95 0.00 30.75 2.74
3206 3436 8.882736 TCACAAACAAGCATACAGAACTATATG 58.117 33.333 0.00 0.00 32.83 1.78
3207 3437 9.618890 ATCACAAACAAGCATACAGAACTATAT 57.381 29.630 0.00 0.00 0.00 0.86
3208 3438 9.448438 AATCACAAACAAGCATACAGAACTATA 57.552 29.630 0.00 0.00 0.00 1.31
3209 3439 7.928307 ATCACAAACAAGCATACAGAACTAT 57.072 32.000 0.00 0.00 0.00 2.12
3210 3440 7.584108 CAATCACAAACAAGCATACAGAACTA 58.416 34.615 0.00 0.00 0.00 2.24
3211 3441 6.441274 CAATCACAAACAAGCATACAGAACT 58.559 36.000 0.00 0.00 0.00 3.01
3212 3442 5.117592 GCAATCACAAACAAGCATACAGAAC 59.882 40.000 0.00 0.00 0.00 3.01
3213 3443 5.221204 TGCAATCACAAACAAGCATACAGAA 60.221 36.000 0.00 0.00 0.00 3.02
3214 3444 4.277921 TGCAATCACAAACAAGCATACAGA 59.722 37.500 0.00 0.00 0.00 3.41
3215 3445 4.548494 TGCAATCACAAACAAGCATACAG 58.452 39.130 0.00 0.00 0.00 2.74
3216 3446 4.581077 TGCAATCACAAACAAGCATACA 57.419 36.364 0.00 0.00 0.00 2.29
3217 3447 4.984161 ACTTGCAATCACAAACAAGCATAC 59.016 37.500 0.00 0.00 42.55 2.39
3225 3455 6.628461 GCAAAAATACACTTGCAATCACAAAC 59.372 34.615 0.00 0.00 45.81 2.93
3244 3474 6.093495 CCATAATAGAGAACGTGGAGCAAAAA 59.907 38.462 0.00 0.00 0.00 1.94
3245 3475 5.584649 CCATAATAGAGAACGTGGAGCAAAA 59.415 40.000 0.00 0.00 0.00 2.44
3251 3481 4.891168 TGCTACCATAATAGAGAACGTGGA 59.109 41.667 0.00 0.00 0.00 4.02
3255 3485 6.346919 GCATTGTGCTACCATAATAGAGAACG 60.347 42.308 0.00 0.00 40.96 3.95
3256 3486 6.892691 GCATTGTGCTACCATAATAGAGAAC 58.107 40.000 0.00 0.00 40.96 3.01
3273 3503 3.750130 GCTGGGATATACAGAGCATTGTG 59.250 47.826 10.27 0.00 38.20 3.33
3275 3505 3.750130 GTGCTGGGATATACAGAGCATTG 59.250 47.826 12.69 0.00 41.46 2.82
3277 3507 2.304180 GGTGCTGGGATATACAGAGCAT 59.696 50.000 12.69 0.00 41.46 3.79
3282 3512 2.700371 TCAGTGGTGCTGGGATATACAG 59.300 50.000 3.17 3.17 45.08 2.74
3287 3517 0.252696 AGGTCAGTGGTGCTGGGATA 60.253 55.000 0.00 0.00 45.08 2.59
3288 3518 1.539869 AGGTCAGTGGTGCTGGGAT 60.540 57.895 0.00 0.00 45.08 3.85
3297 3527 1.067071 GTTTAGGACCGAGGTCAGTGG 60.067 57.143 22.17 0.00 46.20 4.00
3298 3528 1.616865 TGTTTAGGACCGAGGTCAGTG 59.383 52.381 22.17 0.00 46.20 3.66
3305 3535 3.689649 CCCTGAAAATGTTTAGGACCGAG 59.310 47.826 8.04 0.00 41.98 4.63
3306 3536 3.328343 TCCCTGAAAATGTTTAGGACCGA 59.672 43.478 8.04 0.00 41.98 4.69
3329 3559 3.068165 TGTCTGCATAGTTCCCTACGATG 59.932 47.826 0.00 0.00 41.29 3.84
3383 3613 2.103373 TCTGAGGTTAGCTCGCAGAAT 58.897 47.619 6.94 0.00 34.09 2.40
3416 3646 2.098934 ACTCAAGTATCTCGCAGCTGAG 59.901 50.000 20.43 15.90 37.33 3.35
3437 3667 6.019656 ACAGACACTAGAGGGATAGAATGA 57.980 41.667 0.00 0.00 0.00 2.57
3476 3706 3.755112 TTCACACCGATGTAAGAACCA 57.245 42.857 0.00 0.00 36.72 3.67
3482 3712 3.755112 TCACCTTTCACACCGATGTAA 57.245 42.857 0.00 0.00 36.72 2.41
3698 3928 1.429463 ACTCGAACGATTCAGCCAAC 58.571 50.000 0.00 0.00 0.00 3.77
3799 4029 2.266055 GCCTGTCGAGGACTTGGG 59.734 66.667 0.00 5.21 42.93 4.12
3800 4030 2.125912 CGCCTGTCGAGGACTTGG 60.126 66.667 0.00 1.54 42.93 3.61
3937 4170 5.880901 AGTATGCTTTTCAAAGGAAGGAGA 58.119 37.500 0.00 0.00 39.81 3.71
3948 4181 7.067008 GGAATTTACCTGCTAGTATGCTTTTCA 59.933 37.037 0.00 0.00 0.00 2.69
4046 4279 4.100189 TGAGCTAGGACTAAAGGAATGAGC 59.900 45.833 0.00 0.00 0.00 4.26
4100 4333 4.320861 CCCGTGCAAAAATGTAAGTGATGA 60.321 41.667 0.00 0.00 0.00 2.92
4104 4337 3.634568 TCCCGTGCAAAAATGTAAGTG 57.365 42.857 0.00 0.00 0.00 3.16
4326 4577 2.190325 ACAAAGTCGGACGATCGATC 57.810 50.000 24.34 15.68 41.40 3.69
4327 4578 2.259618 CAACAAAGTCGGACGATCGAT 58.740 47.619 24.34 5.96 41.40 3.59
4328 4579 1.667756 CCAACAAAGTCGGACGATCGA 60.668 52.381 24.34 0.00 36.76 3.59
4389 4646 6.166982 AGCTCAAGATATTATACCTTTCGCC 58.833 40.000 0.00 0.00 0.00 5.54
4415 4672 3.951663 TGCAGTACAGCTCTGACTAGTA 58.048 45.455 11.81 0.00 35.20 1.82
4416 4673 2.796557 TGCAGTACAGCTCTGACTAGT 58.203 47.619 11.81 0.00 35.20 2.57
4521 4781 7.412237 GCAGCATCCAAAAATTTAACAAGCTAG 60.412 37.037 0.00 0.00 0.00 3.42
4522 4782 6.368516 GCAGCATCCAAAAATTTAACAAGCTA 59.631 34.615 0.00 0.00 0.00 3.32
4523 4783 5.179929 GCAGCATCCAAAAATTTAACAAGCT 59.820 36.000 0.00 0.00 0.00 3.74
4533 4793 0.390209 GCCACGCAGCATCCAAAAAT 60.390 50.000 0.00 0.00 0.00 1.82
4590 4851 1.200020 GGCGTTCCCAGATCAAACAAG 59.800 52.381 0.00 0.00 0.00 3.16
4632 4893 4.024302 CAGCAGGTCGACACGTATCTATAA 60.024 45.833 18.91 0.00 0.00 0.98
4700 4961 2.436417 GCTCCTCAAATGGTGCTAACA 58.564 47.619 0.00 0.00 41.72 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.