Multiple sequence alignment - TraesCS1A01G191200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G191200 chr1A 100.000 3541 0 0 1 3541 345307637 345311177 0.000000e+00 6540.0
1 TraesCS1A01G191200 chr1A 97.015 335 10 0 3207 3541 345320485 345320819 6.640000e-157 564.0
2 TraesCS1A01G191200 chr1A 97.006 334 10 0 3208 3541 388903016 388903349 2.390000e-156 562.0
3 TraesCS1A01G191200 chr1A 95.283 318 14 1 344 661 345327388 345327704 1.470000e-138 503.0
4 TraesCS1A01G191200 chr5B 86.740 2813 341 22 340 3127 18139382 18136577 0.000000e+00 3099.0
5 TraesCS1A01G191200 chr5B 90.909 187 16 1 158 343 456276465 456276651 2.110000e-62 250.0
6 TraesCS1A01G191200 chr5B 92.857 140 9 1 1 139 456276089 456276228 5.990000e-48 202.0
7 TraesCS1A01G191200 chr3B 86.310 2805 355 25 344 3127 82452410 82449614 0.000000e+00 3025.0
8 TraesCS1A01G191200 chr3B 84.076 314 43 5 344 653 82447491 82447181 2.670000e-76 296.0
9 TraesCS1A01G191200 chr3B 93.617 47 3 0 6 52 52884493 52884539 1.760000e-08 71.3
10 TraesCS1A01G191200 chr4A 88.052 2402 271 16 731 3123 735812336 735814730 0.000000e+00 2832.0
11 TraesCS1A01G191200 chr4A 76.790 2542 503 63 639 3127 676213069 676210562 0.000000e+00 1345.0
12 TraesCS1A01G191200 chr4A 94.988 419 16 3 3127 3541 307772655 307772238 0.000000e+00 652.0
13 TraesCS1A01G191200 chr4A 97.605 334 8 0 3208 3541 290380385 290380718 1.100000e-159 573.0
14 TraesCS1A01G191200 chr4A 97.305 334 9 0 3208 3541 121395683 121396016 5.130000e-158 568.0
15 TraesCS1A01G191200 chr4A 89.499 419 38 6 3128 3541 185075567 185075984 3.130000e-145 525.0
16 TraesCS1A01G191200 chr6B 75.040 2512 540 69 641 3102 275303210 275300736 0.000000e+00 1085.0
17 TraesCS1A01G191200 chr2A 74.363 2395 543 59 761 3124 161600683 161598329 0.000000e+00 955.0
18 TraesCS1A01G191200 chr2A 71.028 535 115 33 2584 3096 692927417 692927933 3.760000e-15 93.5
19 TraesCS1A01G191200 chr7A 90.667 450 14 1 3120 3541 453161076 453161525 1.100000e-159 573.0
20 TraesCS1A01G191200 chr7A 87.309 457 27 7 3114 3541 574401342 574400888 8.830000e-136 494.0
21 TraesCS1A01G191200 chr6A 91.011 445 11 3 3125 3541 258094232 258093789 1.100000e-159 573.0
22 TraesCS1A01G191200 chr6A 97.289 332 9 0 3208 3539 225718990 225719321 6.640000e-157 564.0
23 TraesCS1A01G191200 chr6A 88.235 459 22 8 3112 3541 426843138 426842683 1.460000e-143 520.0
24 TraesCS1A01G191200 chr6A 88.009 442 24 3 3124 3537 134014345 134013905 2.460000e-136 496.0
25 TraesCS1A01G191200 chr1D 95.930 344 13 1 1 343 137633580 137633923 1.110000e-154 556.0
26 TraesCS1A01G191200 chr1D 93.617 47 3 0 6 52 50029723 50029677 1.760000e-08 71.3
27 TraesCS1A01G191200 chr2D 95.349 344 15 1 1 343 34666420 34666763 2.400000e-151 545.0
28 TraesCS1A01G191200 chr2D 94.910 334 16 1 1 333 626640037 626640370 4.050000e-144 521.0
29 TraesCS1A01G191200 chr2D 97.500 40 1 0 655 694 351760155 351760116 6.340000e-08 69.4
30 TraesCS1A01G191200 chr3A 90.361 415 36 3 3128 3539 51077865 51077452 3.110000e-150 542.0
31 TraesCS1A01G191200 chr3A 82.487 394 48 15 655 1030 515255495 515255105 3.410000e-85 326.0
32 TraesCS1A01G191200 chr2B 94.556 349 13 2 1 343 144249100 144249448 5.200000e-148 534.0
33 TraesCS1A01G191200 chr5A 89.762 420 35 4 3128 3539 449120414 449119995 6.730000e-147 531.0
34 TraesCS1A01G191200 chr5A 87.097 62 6 1 10 69 288899997 288899936 6.340000e-08 69.4
35 TraesCS1A01G191200 chr3D 91.570 344 11 2 1 343 45767280 45766954 3.220000e-125 459.0
36 TraesCS1A01G191200 chr3D 100.000 30 0 0 652 681 563872409 563872438 4.940000e-04 56.5
37 TraesCS1A01G191200 chr4D 90.343 321 29 2 344 663 501804369 501804050 1.520000e-113 420.0
38 TraesCS1A01G191200 chr4B 78.057 597 98 19 641 1208 315060511 315059919 2.620000e-91 346.0
39 TraesCS1A01G191200 chr5D 75.418 598 133 14 1537 2127 413465700 413465110 9.680000e-71 278.0
40 TraesCS1A01G191200 chr5D 93.617 47 3 0 6 52 103648316 103648362 1.760000e-08 71.3
41 TraesCS1A01G191200 chr7D 88.235 68 6 2 652 717 511542148 511542081 2.930000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G191200 chr1A 345307637 345311177 3540 False 6540.0 6540 100.000 1 3541 1 chr1A.!!$F1 3540
1 TraesCS1A01G191200 chr5B 18136577 18139382 2805 True 3099.0 3099 86.740 340 3127 1 chr5B.!!$R1 2787
2 TraesCS1A01G191200 chr5B 456276089 456276651 562 False 226.0 250 91.883 1 343 2 chr5B.!!$F1 342
3 TraesCS1A01G191200 chr3B 82447181 82452410 5229 True 1660.5 3025 85.193 344 3127 2 chr3B.!!$R1 2783
4 TraesCS1A01G191200 chr4A 735812336 735814730 2394 False 2832.0 2832 88.052 731 3123 1 chr4A.!!$F4 2392
5 TraesCS1A01G191200 chr4A 676210562 676213069 2507 True 1345.0 1345 76.790 639 3127 1 chr4A.!!$R2 2488
6 TraesCS1A01G191200 chr6B 275300736 275303210 2474 True 1085.0 1085 75.040 641 3102 1 chr6B.!!$R1 2461
7 TraesCS1A01G191200 chr2A 161598329 161600683 2354 True 955.0 955 74.363 761 3124 1 chr2A.!!$R1 2363
8 TraesCS1A01G191200 chr4B 315059919 315060511 592 True 346.0 346 78.057 641 1208 1 chr4B.!!$R1 567
9 TraesCS1A01G191200 chr5D 413465110 413465700 590 True 278.0 278 75.418 1537 2127 1 chr5D.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 1146 0.029567 CGCGTTCTAAGCTCCGATCT 59.970 55.0 0.0 0.0 0.0 2.75 F
958 1211 0.613012 ATTGGGAAGGGTTGCTGAGC 60.613 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 2564 1.065854 AGCATTCTCCCACTTTCCTCG 60.066 52.381 0.0 0.0 0.00 4.63 R
2941 3211 1.274447 AGCAAAAATGCTTCAGCTCCC 59.726 47.619 0.0 0.0 43.52 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.422012 ACTCCCAGTCTGAAAAACAACATTT 59.578 36.000 0.00 0.00 0.00 2.32
54 55 4.270808 CCCAGTCTGAAAAACAACATTTGC 59.729 41.667 0.00 0.00 0.00 3.68
57 58 5.577945 CAGTCTGAAAAACAACATTTGCTGT 59.422 36.000 0.00 0.00 40.84 4.40
89 90 3.136077 CCAGATCACACCCATCTCAGATT 59.864 47.826 0.00 0.00 0.00 2.40
103 104 4.511527 TCTCAGATTGGATTTGCTCTCAC 58.488 43.478 0.00 0.00 0.00 3.51
121 122 0.956633 ACTGTGGATTTGCTGCACTG 59.043 50.000 0.00 0.00 45.74 3.66
129 131 2.582728 TTTGCTGCACTGAAACAAGG 57.417 45.000 0.00 0.00 0.00 3.61
139 141 1.202348 CTGAAACAAGGAAATCCGCCC 59.798 52.381 0.00 0.00 42.08 6.13
140 142 1.203001 TGAAACAAGGAAATCCGCCCT 60.203 47.619 0.00 0.00 42.08 5.19
141 143 1.202348 GAAACAAGGAAATCCGCCCTG 59.798 52.381 0.00 0.00 42.08 4.45
142 144 0.404040 AACAAGGAAATCCGCCCTGA 59.596 50.000 0.00 0.00 42.08 3.86
143 145 0.322546 ACAAGGAAATCCGCCCTGAC 60.323 55.000 0.00 0.00 42.08 3.51
144 146 1.078426 AAGGAAATCCGCCCTGACG 60.078 57.895 0.00 0.00 42.08 4.35
145 147 1.550130 AAGGAAATCCGCCCTGACGA 61.550 55.000 0.00 0.00 42.08 4.20
146 148 1.521681 GGAAATCCGCCCTGACGAG 60.522 63.158 0.00 0.00 34.06 4.18
147 149 2.125106 AAATCCGCCCTGACGAGC 60.125 61.111 0.00 0.00 34.06 5.03
148 150 3.682292 AAATCCGCCCTGACGAGCC 62.682 63.158 0.00 0.00 34.06 4.70
154 156 2.685380 CCCTGACGAGCCCCTCTT 60.685 66.667 0.00 0.00 0.00 2.85
155 157 2.726351 CCCTGACGAGCCCCTCTTC 61.726 68.421 0.00 0.00 30.78 2.87
156 158 2.726351 CCTGACGAGCCCCTCTTCC 61.726 68.421 0.00 0.00 29.29 3.46
170 390 2.517959 CTCTTCCCCAAAATCACAGCA 58.482 47.619 0.00 0.00 0.00 4.41
171 391 2.229784 CTCTTCCCCAAAATCACAGCAC 59.770 50.000 0.00 0.00 0.00 4.40
178 398 3.319755 CCAAAATCACAGCACCATTGAC 58.680 45.455 0.00 0.00 0.00 3.18
186 406 0.548682 AGCACCATTGACTCCCCTCT 60.549 55.000 0.00 0.00 0.00 3.69
219 439 4.899239 CTCATCGAGCCCCCGCAC 62.899 72.222 0.00 0.00 37.52 5.34
241 461 4.020039 ACGTGTACCCCTGATTTTGTATCA 60.020 41.667 0.00 0.00 0.00 2.15
271 492 2.577606 TTTCAGCTCGATTTGGGGAA 57.422 45.000 0.00 0.00 0.00 3.97
288 509 2.488153 GGGAAGTGTGTTGAATACCTGC 59.512 50.000 0.00 0.00 0.00 4.85
321 542 3.731717 GCCATCGTCGATTCTCTTAGTTC 59.268 47.826 4.63 0.00 0.00 3.01
361 582 3.384816 TGTCAGGCACAAGTGACAG 57.615 52.632 9.00 0.00 46.35 3.51
362 583 0.541392 TGTCAGGCACAAGTGACAGT 59.459 50.000 9.00 0.00 46.35 3.55
364 585 0.829990 TCAGGCACAAGTGACAGTGA 59.170 50.000 9.00 1.32 42.32 3.41
373 594 1.704641 AGTGACAGTGAGGTGTAGCA 58.295 50.000 0.00 0.00 0.00 3.49
377 598 3.433615 GTGACAGTGAGGTGTAGCATTTC 59.566 47.826 0.00 0.00 0.00 2.17
386 607 2.032924 GGTGTAGCATTTCCGGCAATAC 59.967 50.000 0.00 0.00 0.00 1.89
405 626 3.848272 ACCGATTTAGTTAACGGACGA 57.152 42.857 11.27 0.00 46.94 4.20
425 646 2.764128 ACGATGGATCCCCTGCGT 60.764 61.111 9.90 10.63 37.81 5.24
467 688 3.005791 GGATTTACTTTGCCAGCTGTTGT 59.994 43.478 13.81 6.29 0.00 3.32
495 716 0.834612 TTCACCTATAACAGCCGGGG 59.165 55.000 2.18 0.00 0.00 5.73
510 731 4.489771 GGGTGTGGCTGGGATCGG 62.490 72.222 0.00 0.00 0.00 4.18
511 732 3.399181 GGTGTGGCTGGGATCGGA 61.399 66.667 0.00 0.00 0.00 4.55
513 734 1.227674 GTGTGGCTGGGATCGGATC 60.228 63.158 9.54 9.54 0.00 3.36
514 735 1.688884 TGTGGCTGGGATCGGATCA 60.689 57.895 18.99 0.00 0.00 2.92
531 753 4.947388 CGGATCACTTTTTCCCCAATTCTA 59.053 41.667 0.00 0.00 0.00 2.10
566 788 2.054799 ACCCTAACACTTGAGCTCCAA 58.945 47.619 12.15 4.89 0.00 3.53
567 789 2.644798 ACCCTAACACTTGAGCTCCAAT 59.355 45.455 12.15 0.00 33.68 3.16
573 795 3.944087 ACACTTGAGCTCCAATTACTCC 58.056 45.455 12.15 0.00 33.68 3.85
574 796 2.932614 CACTTGAGCTCCAATTACTCCG 59.067 50.000 12.15 0.00 33.68 4.63
582 804 6.266786 TGAGCTCCAATTACTCCGAATATACA 59.733 38.462 12.15 0.00 0.00 2.29
587 809 5.810587 CCAATTACTCCGAATATACATCCGG 59.189 44.000 0.00 0.00 43.02 5.14
597 819 1.470051 ATACATCCGGTTTTGGCCAC 58.530 50.000 3.88 0.00 0.00 5.01
602 824 0.676736 TCCGGTTTTGGCCACAATTC 59.323 50.000 3.88 1.06 36.29 2.17
605 827 1.496934 GGTTTTGGCCACAATTCGTG 58.503 50.000 3.88 2.22 45.92 4.35
607 829 0.461548 TTTTGGCCACAATTCGTGCA 59.538 45.000 3.88 0.00 44.91 4.57
612 834 0.804364 GCCACAATTCGTGCATCTCA 59.196 50.000 0.00 0.00 44.91 3.27
614 836 2.613595 GCCACAATTCGTGCATCTCATA 59.386 45.455 0.00 0.00 44.91 2.15
624 846 8.709386 ATTCGTGCATCTCATACCTATAATTC 57.291 34.615 0.00 0.00 0.00 2.17
625 847 7.468141 TCGTGCATCTCATACCTATAATTCT 57.532 36.000 0.00 0.00 0.00 2.40
628 850 7.363355 CGTGCATCTCATACCTATAATTCTCCT 60.363 40.741 0.00 0.00 0.00 3.69
630 852 9.720874 TGCATCTCATACCTATAATTCTCCTAT 57.279 33.333 0.00 0.00 0.00 2.57
657 880 5.318630 AGTTTATAGATCCTCTCGGTCCTC 58.681 45.833 0.00 0.00 0.00 3.71
718 945 2.982470 GCTCTGCTGGTGAAATTTTTCG 59.018 45.455 0.00 0.00 40.01 3.46
893 1146 0.029567 CGCGTTCTAAGCTCCGATCT 59.970 55.000 0.00 0.00 0.00 2.75
916 1169 3.136750 CCAGGGAGGCGAGATCAG 58.863 66.667 0.00 0.00 0.00 2.90
958 1211 0.613012 ATTGGGAAGGGTTGCTGAGC 60.613 55.000 0.00 0.00 0.00 4.26
959 1212 2.361737 GGGAAGGGTTGCTGAGCC 60.362 66.667 0.23 1.26 46.62 4.70
1053 1307 7.813087 TGATCTCCAGGAAATATTAGCCATA 57.187 36.000 9.27 0.00 0.00 2.74
1119 1373 3.072184 AGACTCAGGTGTCAAAGCTTCAT 59.928 43.478 0.00 0.00 39.27 2.57
1133 1387 1.405526 GCTTCATACGGAGGTGCAAGA 60.406 52.381 0.00 0.00 0.00 3.02
1149 1403 3.507233 TGCAAGAAATTGGGTCTAAGCAG 59.493 43.478 0.00 0.00 33.74 4.24
1150 1404 3.758554 GCAAGAAATTGGGTCTAAGCAGA 59.241 43.478 0.00 0.00 0.00 4.26
1212 1466 2.293399 GCTGGACTTGGGTAAACAGTTG 59.707 50.000 0.00 0.00 0.00 3.16
1260 1514 5.440610 ACTCTGGTGAAAACAACTCAATCT 58.559 37.500 0.00 0.00 0.00 2.40
1455 1709 5.163426 ACCAATCAGAGTGAATAGAGCAGAG 60.163 44.000 0.00 0.00 0.00 3.35
1458 1718 3.030291 CAGAGTGAATAGAGCAGAGGGT 58.970 50.000 0.00 0.00 0.00 4.34
1508 1768 4.347000 ACAGGAACAACATAGTACAGTGGT 59.653 41.667 0.00 0.00 0.00 4.16
1519 1779 1.549170 GTACAGTGGTCACCCCTACAG 59.451 57.143 0.00 0.00 0.00 2.74
1617 1877 8.739039 CAGGGTTATCACAGAAATTATGAACAA 58.261 33.333 0.00 0.00 0.00 2.83
1714 1974 2.421107 CCAGTGGGATGGATCAGACAAG 60.421 54.545 0.00 0.00 43.57 3.16
1761 2021 4.808364 GCTGCTCCAGAAGAGTATAAAGTG 59.192 45.833 0.00 0.00 45.21 3.16
1866 2126 5.823861 AACAATTTGGGGCAGAAATAGTT 57.176 34.783 0.78 0.00 0.00 2.24
1943 2205 3.658757 ACAAGCAAACAACACAGTTGT 57.341 38.095 9.54 9.54 37.67 3.32
2107 2371 4.160626 AGTCCTTAACTGATGCCTACTGTC 59.839 45.833 0.00 0.00 36.65 3.51
2148 2412 3.181447 CCAATCATCCACCTATCAGTGCT 60.181 47.826 0.00 0.00 36.38 4.40
2163 2427 4.088634 TCAGTGCTATGCCCAAGAAAAAT 58.911 39.130 0.00 0.00 0.00 1.82
2225 2489 6.096695 GTGCCTTTCAGAACAAAACTAACAA 58.903 36.000 0.00 0.00 0.00 2.83
2272 2536 3.142174 ACTCCAGCAAAGCAAGTAGAAC 58.858 45.455 0.00 0.00 0.00 3.01
2280 2547 4.674101 GCAAAGCAAGTAGAACACAACACA 60.674 41.667 0.00 0.00 0.00 3.72
2297 2564 5.235401 ACAACACAAACACTTTCACAAAACC 59.765 36.000 0.00 0.00 0.00 3.27
2326 2593 2.435805 GTGGGAGAATGCTGGAGATGTA 59.564 50.000 0.00 0.00 0.00 2.29
2364 2631 7.088589 ACATGGTCATAAGTGCAAGTTAATC 57.911 36.000 0.00 0.00 34.97 1.75
2367 2634 4.947388 GGTCATAAGTGCAAGTTAATCCCA 59.053 41.667 0.00 0.00 34.97 4.37
2386 2653 3.937706 CCCAAATGTTCACTTGTTGCAAA 59.062 39.130 0.00 0.00 0.00 3.68
2409 2676 5.725362 ACAGATAGTGTAGAGCAAGAAACC 58.275 41.667 0.00 0.00 37.75 3.27
2451 2718 6.008960 ACATCAAGAGCAAGAAGAAATTCCT 58.991 36.000 0.00 0.00 0.00 3.36
2524 2791 6.040166 GCAAATAGCAGTACCTACACCTACTA 59.960 42.308 0.00 0.00 44.79 1.82
2632 2899 9.248291 CTGTTAAAGCAAATTGTCACTTATTGT 57.752 29.630 0.00 0.00 0.00 2.71
2656 2924 3.740832 GTGAAACCCAAACTTATTGCAGC 59.259 43.478 0.00 0.00 0.00 5.25
2663 2931 1.915141 AACTTATTGCAGCAGCTGGT 58.085 45.000 24.13 13.85 42.74 4.00
2666 2934 0.966875 TTATTGCAGCAGCTGGTGGG 60.967 55.000 38.56 21.09 43.24 4.61
2726 2994 1.040339 TCCAACTGGCCAAACACACC 61.040 55.000 7.01 0.00 34.44 4.16
2783 3051 6.950842 TGGATATGATGTGATTCTGGGATAC 58.049 40.000 0.00 0.00 0.00 2.24
2828 3096 5.419155 TCCAGTAGTCTTCAACATACCAGAG 59.581 44.000 0.00 0.00 0.00 3.35
2905 3174 6.927294 AACACACCAGAGAAAGTTAAAGAG 57.073 37.500 0.00 0.00 0.00 2.85
2925 3194 1.888512 GGTGCCAGCTGAGAAAATGAA 59.111 47.619 17.39 0.00 0.00 2.57
2927 3196 2.294233 GTGCCAGCTGAGAAAATGAACA 59.706 45.455 17.39 0.00 0.00 3.18
3028 3298 4.077822 CTCCTCCTCAAGTGCAGAAATTT 58.922 43.478 0.00 0.00 0.00 1.82
3030 3300 5.630121 TCCTCCTCAAGTGCAGAAATTTTA 58.370 37.500 0.00 0.00 0.00 1.52
3065 3336 6.519891 GCAGATTTATTTGAGGAACCCCAAAA 60.520 38.462 4.77 0.00 36.10 2.44
3134 3405 5.919272 GGTACTGAACCTTCTTGTAACAC 57.081 43.478 0.00 0.00 45.75 3.32
3135 3406 4.753610 GGTACTGAACCTTCTTGTAACACC 59.246 45.833 0.00 0.00 45.75 4.16
3138 3409 2.148768 GAACCTTCTTGTAACACCCCG 58.851 52.381 0.00 0.00 0.00 5.73
3139 3410 0.399075 ACCTTCTTGTAACACCCCGG 59.601 55.000 0.00 0.00 0.00 5.73
3141 3412 1.280998 CCTTCTTGTAACACCCCGGAT 59.719 52.381 0.73 0.00 0.00 4.18
3142 3413 2.356135 CTTCTTGTAACACCCCGGATG 58.644 52.381 0.73 2.98 0.00 3.51
3143 3414 1.354101 TCTTGTAACACCCCGGATGT 58.646 50.000 0.73 3.79 0.00 3.06
3145 3416 2.905085 TCTTGTAACACCCCGGATGTAA 59.095 45.455 0.73 0.00 0.00 2.41
3147 3418 4.019141 TCTTGTAACACCCCGGATGTAATT 60.019 41.667 0.73 0.66 0.00 1.40
3148 3419 4.304048 TGTAACACCCCGGATGTAATTT 57.696 40.909 0.73 0.00 0.00 1.82
3149 3420 5.432680 TGTAACACCCCGGATGTAATTTA 57.567 39.130 0.73 0.00 0.00 1.40
3150 3421 5.184711 TGTAACACCCCGGATGTAATTTAC 58.815 41.667 0.73 7.18 0.00 2.01
3151 3422 3.286329 ACACCCCGGATGTAATTTACC 57.714 47.619 0.73 0.00 0.00 2.85
3152 3423 2.848071 ACACCCCGGATGTAATTTACCT 59.152 45.455 0.73 0.00 0.00 3.08
3153 3424 3.267551 ACACCCCGGATGTAATTTACCTT 59.732 43.478 0.73 0.00 0.00 3.50
3154 3425 4.474287 ACACCCCGGATGTAATTTACCTTA 59.526 41.667 0.73 0.00 0.00 2.69
3155 3426 5.133153 ACACCCCGGATGTAATTTACCTTAT 59.867 40.000 0.73 0.00 0.00 1.73
3156 3427 6.329723 ACACCCCGGATGTAATTTACCTTATA 59.670 38.462 0.73 0.00 0.00 0.98
3157 3428 6.652062 CACCCCGGATGTAATTTACCTTATAC 59.348 42.308 0.73 0.00 0.00 1.47
3158 3429 5.870978 CCCCGGATGTAATTTACCTTATACG 59.129 44.000 0.73 4.06 0.00 3.06
3159 3430 6.458210 CCCGGATGTAATTTACCTTATACGT 58.542 40.000 0.73 0.00 0.00 3.57
3160 3431 7.309744 CCCCGGATGTAATTTACCTTATACGTA 60.310 40.741 0.73 0.00 0.00 3.57
3161 3432 8.253113 CCCGGATGTAATTTACCTTATACGTAT 58.747 37.037 13.54 13.54 0.00 3.06
3162 3433 9.294030 CCGGATGTAATTTACCTTATACGTATC 57.706 37.037 12.24 0.00 0.00 2.24
3163 3434 9.294030 CGGATGTAATTTACCTTATACGTATCC 57.706 37.037 12.24 2.06 0.00 2.59
3164 3435 9.591792 GGATGTAATTTACCTTATACGTATCCC 57.408 37.037 12.24 0.00 0.00 3.85
3167 3438 9.762933 TGTAATTTACCTTATACGTATCCCAAC 57.237 33.333 12.24 0.00 0.00 3.77
3168 3439 9.987272 GTAATTTACCTTATACGTATCCCAACT 57.013 33.333 12.24 0.00 0.00 3.16
3170 3441 7.902920 TTTACCTTATACGTATCCCAACTCT 57.097 36.000 12.24 0.00 0.00 3.24
3171 3442 7.902920 TTACCTTATACGTATCCCAACTCTT 57.097 36.000 12.24 0.00 0.00 2.85
3172 3443 6.158023 ACCTTATACGTATCCCAACTCTTG 57.842 41.667 12.24 0.00 0.00 3.02
3173 3444 4.989168 CCTTATACGTATCCCAACTCTTGC 59.011 45.833 12.24 0.00 0.00 4.01
3174 3445 2.973694 TACGTATCCCAACTCTTGCC 57.026 50.000 0.00 0.00 0.00 4.52
3175 3446 0.108329 ACGTATCCCAACTCTTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
3176 3447 0.108329 CGTATCCCAACTCTTGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
3177 3448 1.674817 CGTATCCCAACTCTTGCCGTT 60.675 52.381 0.00 0.00 0.00 4.44
3178 3449 2.433436 GTATCCCAACTCTTGCCGTTT 58.567 47.619 0.00 0.00 0.00 3.60
3179 3450 1.534729 ATCCCAACTCTTGCCGTTTC 58.465 50.000 0.00 0.00 0.00 2.78
3180 3451 0.536460 TCCCAACTCTTGCCGTTTCC 60.536 55.000 0.00 0.00 0.00 3.13
3181 3452 1.574428 CCAACTCTTGCCGTTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
3191 3462 3.557824 CGTTTCCGGCGCTAAGTT 58.442 55.556 7.64 0.00 0.00 2.66
3192 3463 2.740668 CGTTTCCGGCGCTAAGTTA 58.259 52.632 7.64 0.00 0.00 2.24
3193 3464 1.283736 CGTTTCCGGCGCTAAGTTAT 58.716 50.000 7.64 0.00 0.00 1.89
3194 3465 1.662122 CGTTTCCGGCGCTAAGTTATT 59.338 47.619 7.64 0.00 0.00 1.40
3195 3466 2.094734 CGTTTCCGGCGCTAAGTTATTT 59.905 45.455 7.64 0.00 0.00 1.40
3196 3467 3.425227 CGTTTCCGGCGCTAAGTTATTTT 60.425 43.478 7.64 0.00 0.00 1.82
3197 3468 4.201705 CGTTTCCGGCGCTAAGTTATTTTA 60.202 41.667 7.64 0.00 0.00 1.52
3198 3469 5.502869 CGTTTCCGGCGCTAAGTTATTTTAT 60.503 40.000 7.64 0.00 0.00 1.40
3199 3470 6.260377 GTTTCCGGCGCTAAGTTATTTTATT 58.740 36.000 7.64 0.00 0.00 1.40
3200 3471 6.439675 TTCCGGCGCTAAGTTATTTTATTT 57.560 33.333 7.64 0.00 0.00 1.40
3201 3472 6.051646 TCCGGCGCTAAGTTATTTTATTTC 57.948 37.500 7.64 0.00 0.00 2.17
3202 3473 5.007921 TCCGGCGCTAAGTTATTTTATTTCC 59.992 40.000 7.64 0.00 0.00 3.13
3203 3474 5.008316 CCGGCGCTAAGTTATTTTATTTCCT 59.992 40.000 7.64 0.00 0.00 3.36
3204 3475 6.134061 CGGCGCTAAGTTATTTTATTTCCTC 58.866 40.000 7.64 0.00 0.00 3.71
3205 3476 6.134061 GGCGCTAAGTTATTTTATTTCCTCG 58.866 40.000 7.64 0.00 0.00 4.63
3206 3477 6.134061 GCGCTAAGTTATTTTATTTCCTCGG 58.866 40.000 0.00 0.00 0.00 4.63
3207 3478 6.656003 CGCTAAGTTATTTTATTTCCTCGGG 58.344 40.000 0.00 0.00 0.00 5.14
3208 3479 6.259387 CGCTAAGTTATTTTATTTCCTCGGGT 59.741 38.462 0.00 0.00 0.00 5.28
3209 3480 7.517893 CGCTAAGTTATTTTATTTCCTCGGGTC 60.518 40.741 0.00 0.00 0.00 4.46
3210 3481 6.673154 AAGTTATTTTATTTCCTCGGGTCG 57.327 37.500 0.00 0.00 0.00 4.79
3211 3482 5.737860 AGTTATTTTATTTCCTCGGGTCGT 58.262 37.500 0.00 0.00 0.00 4.34
3212 3483 6.175471 AGTTATTTTATTTCCTCGGGTCGTT 58.825 36.000 0.00 0.00 0.00 3.85
3213 3484 4.957759 ATTTTATTTCCTCGGGTCGTTG 57.042 40.909 0.00 0.00 0.00 4.10
3214 3485 3.405823 TTTATTTCCTCGGGTCGTTGT 57.594 42.857 0.00 0.00 0.00 3.32
3215 3486 2.660189 TATTTCCTCGGGTCGTTGTC 57.340 50.000 0.00 0.00 0.00 3.18
3216 3487 0.682852 ATTTCCTCGGGTCGTTGTCA 59.317 50.000 0.00 0.00 0.00 3.58
3217 3488 0.682852 TTTCCTCGGGTCGTTGTCAT 59.317 50.000 0.00 0.00 0.00 3.06
3218 3489 0.037697 TTCCTCGGGTCGTTGTCATG 60.038 55.000 0.00 0.00 0.00 3.07
3219 3490 2.100631 CCTCGGGTCGTTGTCATGC 61.101 63.158 0.00 0.00 0.00 4.06
3220 3491 1.374125 CTCGGGTCGTTGTCATGCA 60.374 57.895 0.00 0.00 0.00 3.96
3221 3492 0.740868 CTCGGGTCGTTGTCATGCAT 60.741 55.000 0.00 0.00 0.00 3.96
3222 3493 0.739462 TCGGGTCGTTGTCATGCATC 60.739 55.000 0.00 0.00 0.00 3.91
3223 3494 0.740868 CGGGTCGTTGTCATGCATCT 60.741 55.000 0.00 0.00 0.00 2.90
3224 3495 1.009829 GGGTCGTTGTCATGCATCTC 58.990 55.000 0.00 0.00 0.00 2.75
3225 3496 1.675714 GGGTCGTTGTCATGCATCTCA 60.676 52.381 0.00 0.00 0.00 3.27
3226 3497 2.283298 GGTCGTTGTCATGCATCTCAT 58.717 47.619 0.00 0.00 35.31 2.90
3227 3498 3.457234 GGTCGTTGTCATGCATCTCATA 58.543 45.455 0.00 0.00 33.19 2.15
3228 3499 4.060900 GGTCGTTGTCATGCATCTCATAT 58.939 43.478 0.00 0.00 33.19 1.78
3229 3500 4.151335 GGTCGTTGTCATGCATCTCATATC 59.849 45.833 0.00 0.00 33.19 1.63
3230 3501 4.746611 GTCGTTGTCATGCATCTCATATCA 59.253 41.667 0.00 0.00 33.19 2.15
3231 3502 5.407691 GTCGTTGTCATGCATCTCATATCAT 59.592 40.000 0.00 0.00 33.19 2.45
3232 3503 5.407387 TCGTTGTCATGCATCTCATATCATG 59.593 40.000 0.00 0.00 38.05 3.07
3233 3504 5.178809 CGTTGTCATGCATCTCATATCATGT 59.821 40.000 0.00 0.00 37.95 3.21
3234 3505 6.600350 GTTGTCATGCATCTCATATCATGTC 58.400 40.000 0.00 0.00 37.95 3.06
3235 3506 5.860611 TGTCATGCATCTCATATCATGTCA 58.139 37.500 0.00 0.00 37.95 3.58
3236 3507 6.472887 TGTCATGCATCTCATATCATGTCAT 58.527 36.000 0.00 0.00 37.95 3.06
3237 3508 6.594159 TGTCATGCATCTCATATCATGTCATC 59.406 38.462 0.00 0.00 37.95 2.92
3238 3509 6.594159 GTCATGCATCTCATATCATGTCATCA 59.406 38.462 0.00 0.00 37.95 3.07
3239 3510 7.281100 GTCATGCATCTCATATCATGTCATCAT 59.719 37.037 0.00 0.00 37.95 2.45
3240 3511 7.280876 TCATGCATCTCATATCATGTCATCATG 59.719 37.037 0.00 2.27 41.82 3.07
3241 3512 7.066284 CATGCATCTCATATCATGTCATCATGT 59.934 37.037 0.00 0.27 41.53 3.21
3242 3513 7.066284 ATGCATCTCATATCATGTCATCATGTG 59.934 37.037 0.00 0.00 41.56 3.21
3249 3520 3.157932 CATGTCATCATGTGCATTGCA 57.842 42.857 7.38 7.38 44.37 4.08
3250 3521 3.716601 CATGTCATCATGTGCATTGCAT 58.283 40.909 15.49 0.00 44.37 3.96
3251 3522 3.878160 TGTCATCATGTGCATTGCATT 57.122 38.095 15.49 2.84 41.91 3.56
3252 3523 4.195225 TGTCATCATGTGCATTGCATTT 57.805 36.364 15.49 2.46 41.91 2.32
3253 3524 3.929610 TGTCATCATGTGCATTGCATTTG 59.070 39.130 15.49 14.76 41.91 2.32
3254 3525 2.933260 TCATCATGTGCATTGCATTTGC 59.067 40.909 15.49 13.65 41.91 3.68
3266 3537 1.685302 GCATTTGCATTCGTGTTCGT 58.315 45.000 0.00 0.00 41.59 3.85
3267 3538 1.643810 GCATTTGCATTCGTGTTCGTC 59.356 47.619 0.00 0.00 41.59 4.20
3268 3539 2.665519 GCATTTGCATTCGTGTTCGTCT 60.666 45.455 0.00 0.00 41.59 4.18
3269 3540 2.941891 TTTGCATTCGTGTTCGTCTC 57.058 45.000 0.00 0.00 38.33 3.36
3280 3551 1.203928 GTTCGTCTCATGCATCCGAG 58.796 55.000 7.55 7.55 0.00 4.63
3281 3552 0.528466 TTCGTCTCATGCATCCGAGC 60.528 55.000 8.78 4.49 0.00 5.03
3289 3560 2.492418 TGCATCCGAGCATTTTCCC 58.508 52.632 0.00 0.00 40.11 3.97
3290 3561 1.037030 TGCATCCGAGCATTTTCCCC 61.037 55.000 0.00 0.00 40.11 4.81
3292 3563 0.748005 CATCCGAGCATTTTCCCCGT 60.748 55.000 0.00 0.00 0.00 5.28
3293 3564 0.034477 ATCCGAGCATTTTCCCCGTT 60.034 50.000 0.00 0.00 0.00 4.44
3295 3566 1.241315 CCGAGCATTTTCCCCGTTGT 61.241 55.000 0.00 0.00 0.00 3.32
3296 3567 0.168128 CGAGCATTTTCCCCGTTGTC 59.832 55.000 0.00 0.00 0.00 3.18
3298 3569 1.211709 GCATTTTCCCCGTTGTCCG 59.788 57.895 0.00 0.00 0.00 4.79
3299 3570 1.520600 GCATTTTCCCCGTTGTCCGT 61.521 55.000 0.00 0.00 33.66 4.69
3300 3571 0.955905 CATTTTCCCCGTTGTCCGTT 59.044 50.000 0.00 0.00 33.66 4.44
3302 3573 1.472188 TTTTCCCCGTTGTCCGTTTT 58.528 45.000 0.00 0.00 33.66 2.43
3303 3574 0.739561 TTTCCCCGTTGTCCGTTTTG 59.260 50.000 0.00 0.00 33.66 2.44
3304 3575 1.726533 TTCCCCGTTGTCCGTTTTGC 61.727 55.000 0.00 0.00 33.66 3.68
3305 3576 2.482333 CCCCGTTGTCCGTTTTGCA 61.482 57.895 0.00 0.00 33.66 4.08
3306 3577 1.657556 CCCGTTGTCCGTTTTGCAT 59.342 52.632 0.00 0.00 33.66 3.96
3307 3578 0.031449 CCCGTTGTCCGTTTTGCATT 59.969 50.000 0.00 0.00 33.66 3.56
3308 3579 1.404477 CCGTTGTCCGTTTTGCATTC 58.596 50.000 0.00 0.00 33.66 2.67
3309 3580 1.404477 CGTTGTCCGTTTTGCATTCC 58.596 50.000 0.00 0.00 0.00 3.01
3310 3581 1.404477 GTTGTCCGTTTTGCATTCCG 58.596 50.000 0.00 0.00 0.00 4.30
3311 3582 0.312416 TTGTCCGTTTTGCATTCCGG 59.688 50.000 11.08 11.08 41.75 5.14
3312 3583 1.443702 GTCCGTTTTGCATTCCGGC 60.444 57.895 12.17 5.68 40.23 6.13
3313 3584 2.503809 CCGTTTTGCATTCCGGCG 60.504 61.111 0.00 0.00 36.28 6.46
3314 3585 3.171911 CGTTTTGCATTCCGGCGC 61.172 61.111 0.00 0.00 36.28 6.53
3315 3586 2.258286 GTTTTGCATTCCGGCGCT 59.742 55.556 7.64 0.00 36.28 5.92
3317 3588 2.988688 TTTTGCATTCCGGCGCTCC 61.989 57.895 7.64 0.00 36.28 4.70
3318 3589 3.918253 TTTGCATTCCGGCGCTCCT 62.918 57.895 7.64 0.00 36.28 3.69
3321 5535 2.029844 GCATTCCGGCGCTCCTATC 61.030 63.158 7.64 0.00 0.00 2.08
3327 5541 1.214062 CGGCGCTCCTATCTCATCC 59.786 63.158 7.64 0.00 0.00 3.51
3328 5542 1.214062 GGCGCTCCTATCTCATCCG 59.786 63.158 7.64 0.00 0.00 4.18
3331 5545 0.242286 CGCTCCTATCTCATCCGGTG 59.758 60.000 0.00 0.00 0.00 4.94
3332 5546 0.605589 GCTCCTATCTCATCCGGTGG 59.394 60.000 0.00 0.00 0.00 4.61
3333 5547 2.002505 CTCCTATCTCATCCGGTGGT 57.997 55.000 0.00 0.00 0.00 4.16
3335 5549 0.969894 CCTATCTCATCCGGTGGTCC 59.030 60.000 0.00 0.00 0.00 4.46
3340 5554 0.905357 CTCATCCGGTGGTCCTTTCT 59.095 55.000 0.00 0.00 0.00 2.52
3342 5556 1.829222 TCATCCGGTGGTCCTTTCTAC 59.171 52.381 0.00 0.00 0.00 2.59
3344 5558 0.115745 TCCGGTGGTCCTTTCTACCT 59.884 55.000 0.00 0.00 36.92 3.08
3346 5560 1.066358 CCGGTGGTCCTTTCTACCTTC 60.066 57.143 0.00 0.00 36.92 3.46
3350 5564 4.726583 GGTGGTCCTTTCTACCTTCTTTT 58.273 43.478 0.00 0.00 37.91 2.27
3353 5567 4.102054 TGGTCCTTTCTACCTTCTTTTCGT 59.898 41.667 0.00 0.00 37.91 3.85
3355 5569 5.055144 GTCCTTTCTACCTTCTTTTCGTGT 58.945 41.667 0.00 0.00 0.00 4.49
3356 5570 5.050295 GTCCTTTCTACCTTCTTTTCGTGTG 60.050 44.000 0.00 0.00 0.00 3.82
3357 5571 4.814771 CCTTTCTACCTTCTTTTCGTGTGT 59.185 41.667 0.00 0.00 0.00 3.72
3358 5572 5.277345 CCTTTCTACCTTCTTTTCGTGTGTG 60.277 44.000 0.00 0.00 0.00 3.82
3359 5573 3.724374 TCTACCTTCTTTTCGTGTGTGG 58.276 45.455 0.00 0.00 0.00 4.17
3360 5574 1.675552 ACCTTCTTTTCGTGTGTGGG 58.324 50.000 0.00 0.00 0.00 4.61
3361 5575 0.951558 CCTTCTTTTCGTGTGTGGGG 59.048 55.000 0.00 0.00 0.00 4.96
3362 5576 0.951558 CTTCTTTTCGTGTGTGGGGG 59.048 55.000 0.00 0.00 0.00 5.40
3363 5577 0.256464 TTCTTTTCGTGTGTGGGGGT 59.744 50.000 0.00 0.00 0.00 4.95
3364 5578 0.256464 TCTTTTCGTGTGTGGGGGTT 59.744 50.000 0.00 0.00 0.00 4.11
3365 5579 0.383949 CTTTTCGTGTGTGGGGGTTG 59.616 55.000 0.00 0.00 0.00 3.77
3366 5580 0.034380 TTTTCGTGTGTGGGGGTTGA 60.034 50.000 0.00 0.00 0.00 3.18
3368 5582 0.034380 TTCGTGTGTGGGGGTTGAAA 60.034 50.000 0.00 0.00 0.00 2.69
3369 5583 0.034380 TCGTGTGTGGGGGTTGAAAA 60.034 50.000 0.00 0.00 0.00 2.29
3370 5584 1.036707 CGTGTGTGGGGGTTGAAAAT 58.963 50.000 0.00 0.00 0.00 1.82
3371 5585 1.410882 CGTGTGTGGGGGTTGAAAATT 59.589 47.619 0.00 0.00 0.00 1.82
3372 5586 2.159028 CGTGTGTGGGGGTTGAAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
3373 5587 3.462982 GTGTGTGGGGGTTGAAAATTTC 58.537 45.455 0.00 0.00 0.00 2.17
3374 5588 2.436173 TGTGTGGGGGTTGAAAATTTCC 59.564 45.455 3.00 0.00 0.00 3.13
3376 5590 1.001520 GTGGGGGTTGAAAATTTCCGG 59.998 52.381 3.00 0.00 0.00 5.14
3378 5592 2.184533 GGGGGTTGAAAATTTCCGGAT 58.815 47.619 4.15 0.00 0.00 4.18
3379 5593 2.569853 GGGGGTTGAAAATTTCCGGATT 59.430 45.455 4.15 0.00 0.00 3.01
3380 5594 3.595173 GGGGTTGAAAATTTCCGGATTG 58.405 45.455 4.15 0.00 0.00 2.67
3381 5595 3.595173 GGGTTGAAAATTTCCGGATTGG 58.405 45.455 4.15 0.00 40.09 3.16
3391 5605 1.938585 TCCGGATTGGACTGAGACTT 58.061 50.000 0.00 0.00 43.74 3.01
3393 5607 1.363744 CGGATTGGACTGAGACTTGC 58.636 55.000 0.00 0.00 0.00 4.01
3394 5608 1.743996 GGATTGGACTGAGACTTGCC 58.256 55.000 0.00 0.00 0.00 4.52
3396 5610 2.553028 GGATTGGACTGAGACTTGCCAA 60.553 50.000 0.00 0.00 42.23 4.52
3398 5612 0.250467 TGGACTGAGACTTGCCAAGC 60.250 55.000 3.88 0.00 0.00 4.01
3399 5613 1.294659 GGACTGAGACTTGCCAAGCG 61.295 60.000 3.88 0.00 0.00 4.68
3400 5614 1.294659 GACTGAGACTTGCCAAGCGG 61.295 60.000 3.88 0.00 0.00 5.52
3414 5628 1.467342 CAAGCGGCCTTGGTTTACTAC 59.533 52.381 0.00 0.00 43.75 2.73
3438 5652 1.860078 GACCGCCTGTCAAGTTTCG 59.140 57.895 0.00 0.00 43.85 3.46
3439 5653 0.878961 GACCGCCTGTCAAGTTTCGT 60.879 55.000 0.00 0.00 43.85 3.85
3440 5654 0.390124 ACCGCCTGTCAAGTTTCGTA 59.610 50.000 0.00 0.00 0.00 3.43
3442 5656 0.788391 CGCCTGTCAAGTTTCGTACC 59.212 55.000 0.00 0.00 0.00 3.34
3444 5658 2.423577 GCCTGTCAAGTTTCGTACCAT 58.576 47.619 0.00 0.00 0.00 3.55
3445 5659 2.812011 GCCTGTCAAGTTTCGTACCATT 59.188 45.455 0.00 0.00 0.00 3.16
3446 5660 3.252458 GCCTGTCAAGTTTCGTACCATTT 59.748 43.478 0.00 0.00 0.00 2.32
3449 5663 4.452825 TGTCAAGTTTCGTACCATTTGGA 58.547 39.130 3.01 0.00 38.94 3.53
3450 5664 4.273969 TGTCAAGTTTCGTACCATTTGGAC 59.726 41.667 3.01 0.00 38.94 4.02
3452 5666 5.008316 GTCAAGTTTCGTACCATTTGGACTT 59.992 40.000 3.01 0.00 38.94 3.01
3453 5667 5.237779 TCAAGTTTCGTACCATTTGGACTTC 59.762 40.000 3.01 0.00 38.94 3.01
3454 5668 3.744426 AGTTTCGTACCATTTGGACTTCG 59.256 43.478 3.01 2.98 38.94 3.79
3456 5670 3.389925 TCGTACCATTTGGACTTCGTT 57.610 42.857 3.01 0.00 38.94 3.85
3458 5672 3.495377 TCGTACCATTTGGACTTCGTTTG 59.505 43.478 3.01 0.00 38.94 2.93
3460 5674 4.153475 CGTACCATTTGGACTTCGTTTGAT 59.847 41.667 3.01 0.00 38.94 2.57
3461 5675 5.349270 CGTACCATTTGGACTTCGTTTGATA 59.651 40.000 3.01 0.00 38.94 2.15
3462 5676 5.622770 ACCATTTGGACTTCGTTTGATAC 57.377 39.130 3.01 0.00 38.94 2.24
3463 5677 5.313712 ACCATTTGGACTTCGTTTGATACT 58.686 37.500 3.01 0.00 38.94 2.12
3464 5678 5.411669 ACCATTTGGACTTCGTTTGATACTC 59.588 40.000 3.01 0.00 38.94 2.59
3465 5679 5.163754 CCATTTGGACTTCGTTTGATACTCC 60.164 44.000 0.00 0.00 37.39 3.85
3466 5680 4.610605 TTGGACTTCGTTTGATACTCCA 57.389 40.909 0.00 0.00 0.00 3.86
3468 5682 4.312443 TGGACTTCGTTTGATACTCCAAC 58.688 43.478 0.00 0.00 0.00 3.77
3469 5683 3.367025 GGACTTCGTTTGATACTCCAACG 59.633 47.826 7.05 7.05 0.00 4.10
3473 5687 4.517952 TCGTTTGATACTCCAACGGTTA 57.482 40.909 11.87 0.00 0.00 2.85
3474 5688 4.880759 TCGTTTGATACTCCAACGGTTAA 58.119 39.130 11.87 0.00 0.00 2.01
3475 5689 4.685628 TCGTTTGATACTCCAACGGTTAAC 59.314 41.667 11.87 0.00 0.00 2.01
3476 5690 4.143052 CGTTTGATACTCCAACGGTTAACC 60.143 45.833 15.13 15.13 0.00 2.85
3486 5700 3.698765 GGTTAACCGAGGGACCGA 58.301 61.111 9.34 0.00 0.00 4.69
3488 5702 0.967380 GGTTAACCGAGGGACCGAGA 60.967 60.000 9.34 0.00 0.00 4.04
3489 5703 0.890683 GTTAACCGAGGGACCGAGAA 59.109 55.000 0.00 0.00 0.00 2.87
3490 5704 1.135170 GTTAACCGAGGGACCGAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
3492 5706 3.839432 CCGAGGGACCGAGAAGGC 61.839 72.222 0.00 0.00 46.52 4.35
3493 5707 3.839432 CGAGGGACCGAGAAGGCC 61.839 72.222 0.00 0.00 46.52 5.19
3495 5709 2.364448 AGGGACCGAGAAGGCCTC 60.364 66.667 5.23 0.00 46.52 4.70
3502 5716 4.268687 GAGAAGGCCTCGTGTGTG 57.731 61.111 5.23 0.00 31.32 3.82
3504 5718 0.249911 GAGAAGGCCTCGTGTGTGTT 60.250 55.000 5.23 0.00 31.32 3.32
3505 5719 0.532862 AGAAGGCCTCGTGTGTGTTG 60.533 55.000 5.23 0.00 0.00 3.33
3506 5720 2.117941 GAAGGCCTCGTGTGTGTTGC 62.118 60.000 5.23 0.00 0.00 4.17
3507 5721 2.884997 AAGGCCTCGTGTGTGTTGCA 62.885 55.000 5.23 0.00 0.00 4.08
3510 5870 2.633657 CTCGTGTGTGTTGCAGCC 59.366 61.111 0.00 0.00 0.00 4.85
3521 5881 2.114638 TTGCAGCCCAACACACTTC 58.885 52.632 0.00 0.00 0.00 3.01
3523 5883 1.827789 GCAGCCCAACACACTTCCA 60.828 57.895 0.00 0.00 0.00 3.53
3528 5888 2.102925 AGCCCAACACACTTCCAATTTG 59.897 45.455 0.00 0.00 0.00 2.32
3530 5890 2.482864 CCAACACACTTCCAATTTGGC 58.517 47.619 10.76 0.00 37.47 4.52
3534 5894 1.415659 CACACTTCCAATTTGGCCCAA 59.584 47.619 10.76 0.00 37.47 4.12
3537 5897 2.877786 CACTTCCAATTTGGCCCAAAAC 59.122 45.455 13.87 0.00 36.90 2.43
3538 5898 2.158682 ACTTCCAATTTGGCCCAAAACC 60.159 45.455 13.87 0.00 36.90 3.27
3539 5899 0.767998 TCCAATTTGGCCCAAAACCC 59.232 50.000 13.87 0.00 36.90 4.11
3540 5900 0.475906 CCAATTTGGCCCAAAACCCA 59.524 50.000 13.87 0.00 36.90 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.529010 CTGGGGCTTCACAACAGCA 60.529 57.895 0.00 0.00 39.21 4.41
54 55 1.271543 TGATCTGGGGCTTCACAACAG 60.272 52.381 0.00 0.00 0.00 3.16
57 58 0.770499 TGTGATCTGGGGCTTCACAA 59.230 50.000 2.71 0.00 44.85 3.33
59 60 0.678048 GGTGTGATCTGGGGCTTCAC 60.678 60.000 0.00 0.00 40.10 3.18
89 90 1.699083 TCCACAGTGAGAGCAAATCCA 59.301 47.619 0.62 0.00 0.00 3.41
103 104 1.241165 TCAGTGCAGCAAATCCACAG 58.759 50.000 0.00 0.00 32.09 3.66
121 122 1.202348 CAGGGCGGATTTCCTTGTTTC 59.798 52.381 0.00 0.00 0.00 2.78
129 131 2.174319 GCTCGTCAGGGCGGATTTC 61.174 63.158 0.00 0.00 32.17 2.17
139 141 2.726351 GGGAAGAGGGGCTCGTCAG 61.726 68.421 9.32 0.00 39.94 3.51
140 142 2.683933 GGGAAGAGGGGCTCGTCA 60.684 66.667 9.32 0.00 39.94 4.35
141 143 3.471806 GGGGAAGAGGGGCTCGTC 61.472 72.222 0.00 0.00 38.05 4.20
142 144 3.864983 TTGGGGAAGAGGGGCTCGT 62.865 63.158 0.00 0.00 35.36 4.18
143 145 2.137177 TTTTGGGGAAGAGGGGCTCG 62.137 60.000 0.00 0.00 35.36 5.03
144 146 0.336392 ATTTTGGGGAAGAGGGGCTC 59.664 55.000 0.00 0.00 0.00 4.70
145 147 0.336392 GATTTTGGGGAAGAGGGGCT 59.664 55.000 0.00 0.00 0.00 5.19
146 148 0.041090 TGATTTTGGGGAAGAGGGGC 59.959 55.000 0.00 0.00 0.00 5.80
147 149 1.077005 TGTGATTTTGGGGAAGAGGGG 59.923 52.381 0.00 0.00 0.00 4.79
148 150 2.450476 CTGTGATTTTGGGGAAGAGGG 58.550 52.381 0.00 0.00 0.00 4.30
149 151 1.821136 GCTGTGATTTTGGGGAAGAGG 59.179 52.381 0.00 0.00 0.00 3.69
150 152 2.229784 GTGCTGTGATTTTGGGGAAGAG 59.770 50.000 0.00 0.00 0.00 2.85
151 153 2.238521 GTGCTGTGATTTTGGGGAAGA 58.761 47.619 0.00 0.00 0.00 2.87
152 154 1.273327 GGTGCTGTGATTTTGGGGAAG 59.727 52.381 0.00 0.00 0.00 3.46
153 155 1.337118 GGTGCTGTGATTTTGGGGAA 58.663 50.000 0.00 0.00 0.00 3.97
154 156 0.187117 TGGTGCTGTGATTTTGGGGA 59.813 50.000 0.00 0.00 0.00 4.81
155 157 1.269012 ATGGTGCTGTGATTTTGGGG 58.731 50.000 0.00 0.00 0.00 4.96
156 158 2.299582 TCAATGGTGCTGTGATTTTGGG 59.700 45.455 0.00 0.00 0.00 4.12
170 390 1.566298 GGCAGAGGGGAGTCAATGGT 61.566 60.000 0.00 0.00 0.00 3.55
171 391 1.225704 GGCAGAGGGGAGTCAATGG 59.774 63.158 0.00 0.00 0.00 3.16
178 398 2.363018 TCGTGAGGCAGAGGGGAG 60.363 66.667 0.00 0.00 0.00 4.30
219 439 4.509616 TGATACAAAATCAGGGGTACACG 58.490 43.478 0.00 0.00 0.00 4.49
221 441 6.177610 GTCTTGATACAAAATCAGGGGTACA 58.822 40.000 0.00 0.00 0.00 2.90
241 461 2.497675 TCGAGCTGAAATGCTAGGTCTT 59.502 45.455 0.00 0.00 44.17 3.01
271 492 2.143122 CACGCAGGTATTCAACACACT 58.857 47.619 0.00 0.00 0.00 3.55
296 517 1.299468 GAGAATCGACGATGGCGCT 60.299 57.895 11.83 6.78 42.48 5.92
299 520 3.357166 ACTAAGAGAATCGACGATGGC 57.643 47.619 11.83 6.97 42.67 4.40
300 521 3.969352 CGAACTAAGAGAATCGACGATGG 59.031 47.826 11.83 0.00 42.67 3.51
302 523 5.334260 GGATCGAACTAAGAGAATCGACGAT 60.334 44.000 4.05 4.05 45.77 3.73
356 577 3.557054 GGAAATGCTACACCTCACTGTCA 60.557 47.826 0.00 0.00 0.00 3.58
358 579 2.612972 CGGAAATGCTACACCTCACTGT 60.613 50.000 0.00 0.00 0.00 3.55
361 582 1.369625 CCGGAAATGCTACACCTCAC 58.630 55.000 0.00 0.00 0.00 3.51
362 583 0.392461 GCCGGAAATGCTACACCTCA 60.392 55.000 5.05 0.00 0.00 3.86
364 585 0.037590 TTGCCGGAAATGCTACACCT 59.962 50.000 5.05 0.00 0.00 4.00
386 607 2.854185 GGTCGTCCGTTAACTAAATCGG 59.146 50.000 3.71 0.00 43.65 4.18
389 610 3.057596 TCGTGGTCGTCCGTTAACTAAAT 60.058 43.478 3.71 0.00 38.33 1.40
392 613 1.518325 TCGTGGTCGTCCGTTAACTA 58.482 50.000 3.71 0.00 38.33 2.24
405 626 2.746375 GCAGGGGATCCATCGTGGT 61.746 63.158 15.23 0.00 39.03 4.16
425 646 1.484653 CAACGGTGGATATCAGTCCCA 59.515 52.381 4.83 0.00 37.48 4.37
456 677 2.633860 AGCTACAACAACAGCTGGC 58.366 52.632 19.93 8.97 46.21 4.85
467 688 5.646360 GGCTGTTATAGGTGAAAAGCTACAA 59.354 40.000 0.00 0.00 0.00 2.41
495 716 1.227674 GATCCGATCCCAGCCACAC 60.228 63.158 0.00 0.00 0.00 3.82
510 731 8.531146 TGATTTAGAATTGGGGAAAAAGTGATC 58.469 33.333 0.00 0.00 0.00 2.92
511 732 8.434589 TGATTTAGAATTGGGGAAAAAGTGAT 57.565 30.769 0.00 0.00 0.00 3.06
513 734 7.550196 CCATGATTTAGAATTGGGGAAAAAGTG 59.450 37.037 0.00 0.00 0.00 3.16
514 735 7.311234 CCCATGATTTAGAATTGGGGAAAAAGT 60.311 37.037 0.00 0.00 42.79 2.66
557 779 5.808366 ATATTCGGAGTAATTGGAGCTCA 57.192 39.130 17.19 0.00 0.00 4.26
573 795 3.058501 GGCCAAAACCGGATGTATATTCG 60.059 47.826 9.46 0.00 34.99 3.34
574 796 3.886505 TGGCCAAAACCGGATGTATATTC 59.113 43.478 9.46 0.00 0.00 1.75
582 804 1.275010 GAATTGTGGCCAAAACCGGAT 59.725 47.619 11.56 0.00 33.44 4.18
597 819 7.889589 TTATAGGTATGAGATGCACGAATTG 57.110 36.000 0.00 0.00 0.00 2.32
602 824 6.754209 GGAGAATTATAGGTATGAGATGCACG 59.246 42.308 0.00 0.00 0.00 5.34
657 880 4.987408 TGGCTCATGATACCAATTTGTG 57.013 40.909 13.74 0.00 0.00 3.33
724 951 0.323451 GAAAAGGGTGGGATTCGCCT 60.323 55.000 0.00 0.00 45.18 5.52
807 1058 2.420722 GACCGATTTGTGCCCGAATTAA 59.579 45.455 0.00 0.00 0.00 1.40
808 1059 2.011222 GACCGATTTGTGCCCGAATTA 58.989 47.619 0.00 0.00 0.00 1.40
958 1211 3.937079 GGTACGGAATTTACCACTGAAGG 59.063 47.826 0.71 0.00 39.17 3.46
959 1212 3.937079 GGGTACGGAATTTACCACTGAAG 59.063 47.826 7.05 0.00 40.88 3.02
1009 1263 5.147330 TCAGTGTCATCGATTACCTTGTT 57.853 39.130 7.25 0.00 0.00 2.83
1010 1264 4.801330 TCAGTGTCATCGATTACCTTGT 57.199 40.909 7.25 0.00 0.00 3.16
1044 1298 6.061441 TCCAAATTCATCACGTATGGCTAAT 58.939 36.000 0.00 0.00 36.15 1.73
1047 1301 3.879295 CTCCAAATTCATCACGTATGGCT 59.121 43.478 0.00 0.00 36.15 4.75
1053 1307 3.189287 GCAAGACTCCAAATTCATCACGT 59.811 43.478 0.00 0.00 0.00 4.49
1119 1373 2.432444 CCAATTTCTTGCACCTCCGTA 58.568 47.619 0.00 0.00 0.00 4.02
1133 1387 4.780021 TCTCTCTCTGCTTAGACCCAATTT 59.220 41.667 0.00 0.00 0.00 1.82
1164 1418 1.359848 GTTCCACATCGCCTACAGTG 58.640 55.000 0.00 0.00 0.00 3.66
1212 1466 5.419542 TGCAGGACATTACTGATTACTGAC 58.580 41.667 0.00 0.00 38.20 3.51
1260 1514 2.299013 AGGACGATCTGCTTGTTGTGTA 59.701 45.455 0.00 0.00 0.00 2.90
1458 1718 2.425538 TTGGTTTGCAAATCCAGGAGGA 60.426 45.455 19.51 8.52 45.67 3.71
1508 1768 0.835971 TCTTGCTGCTGTAGGGGTGA 60.836 55.000 0.00 0.00 0.00 4.02
1519 1779 2.849880 TGAACTTGTTGTCTTGCTGC 57.150 45.000 0.00 0.00 0.00 5.25
1617 1877 0.111061 TGAACTGGGCTTGCATGTCT 59.889 50.000 4.03 0.00 0.00 3.41
1714 1974 3.429410 GCCATCTGGAAGTATTTGTTGCC 60.429 47.826 0.00 0.00 37.39 4.52
1866 2126 5.780282 TGATCCTTGTTCTGAGAACCTCTTA 59.220 40.000 21.45 0.52 0.00 2.10
1917 2179 4.685628 ACTGTGTTGTTTGCTTGTTTCAAG 59.314 37.500 5.28 5.28 0.00 3.02
1943 2205 7.167924 TCCTCAAATTGCTTTGTATATGCAA 57.832 32.000 1.68 1.68 46.82 4.08
2107 2371 6.655003 TGATTGGGTTCTACTTCTTTTGCTAG 59.345 38.462 0.00 0.00 0.00 3.42
2148 2412 5.889289 GGTACTGGTATTTTTCTTGGGCATA 59.111 40.000 0.00 0.00 0.00 3.14
2272 2536 5.896922 TTTGTGAAAGTGTTTGTGTTGTG 57.103 34.783 0.00 0.00 0.00 3.33
2280 2547 3.759618 TCCTCGGTTTTGTGAAAGTGTTT 59.240 39.130 0.00 0.00 0.00 2.83
2297 2564 1.065854 AGCATTCTCCCACTTTCCTCG 60.066 52.381 0.00 0.00 0.00 4.63
2326 2593 2.000048 ACCATGTACCCATTTGTCCCT 59.000 47.619 0.00 0.00 0.00 4.20
2364 2631 3.176552 TGCAACAAGTGAACATTTGGG 57.823 42.857 12.97 7.11 33.05 4.12
2367 2634 5.477510 TCTGTTTGCAACAAGTGAACATTT 58.522 33.333 0.00 0.00 41.61 2.32
2386 2653 5.482175 AGGTTTCTTGCTCTACACTATCTGT 59.518 40.000 0.00 0.00 36.82 3.41
2391 2658 4.591498 TCCAAGGTTTCTTGCTCTACACTA 59.409 41.667 0.96 0.00 46.69 2.74
2409 2676 5.551233 TGATGTAACACTTCCTCTTCCAAG 58.449 41.667 0.00 0.00 0.00 3.61
2451 2718 3.269381 ACATTGCCTAATCCCCTTCTTCA 59.731 43.478 0.00 0.00 0.00 3.02
2463 2730 5.252547 TGAGCAGTAATGAACATTGCCTAA 58.747 37.500 9.87 0.00 34.54 2.69
2632 2899 5.278758 GCTGCAATAAGTTTGGGTTTCACTA 60.279 40.000 0.00 0.00 0.00 2.74
2656 2924 2.758423 GTTAATTTACCCCCACCAGCTG 59.242 50.000 6.78 6.78 0.00 4.24
2663 2931 4.668636 CTGTGGAAGTTAATTTACCCCCA 58.331 43.478 2.56 2.56 0.00 4.96
2666 2934 4.765339 ACAGCTGTGGAAGTTAATTTACCC 59.235 41.667 20.97 0.00 0.00 3.69
2693 2961 2.958355 CAGTTGGAATTCACAGTTGGGT 59.042 45.455 7.93 0.00 0.00 4.51
2726 2994 7.591426 GGTAAAACTCTGAAATTGTACTGCAAG 59.409 37.037 0.00 0.00 40.86 4.01
2804 3072 5.330233 TCTGGTATGTTGAAGACTACTGGA 58.670 41.667 0.00 0.00 0.00 3.86
2812 3080 5.808366 AGTGTTCTCTGGTATGTTGAAGA 57.192 39.130 0.00 0.00 0.00 2.87
2905 3174 1.538047 TCATTTTCTCAGCTGGCACC 58.462 50.000 15.13 0.00 0.00 5.01
2925 3194 5.191722 TCAGCTCCCTTATCCAGTAATTTGT 59.808 40.000 0.00 0.00 0.00 2.83
2927 3196 5.975988 TCAGCTCCCTTATCCAGTAATTT 57.024 39.130 0.00 0.00 0.00 1.82
2941 3211 1.274447 AGCAAAAATGCTTCAGCTCCC 59.726 47.619 0.00 0.00 43.52 4.30
3030 3300 9.370930 TCCTCAAATAAATCTGCATATTCCATT 57.629 29.630 0.00 0.00 0.00 3.16
3046 3317 4.591072 CAGGTTTTGGGGTTCCTCAAATAA 59.409 41.667 16.26 1.63 33.58 1.40
3065 3336 0.692419 CTCCCTATGTGGAGGCAGGT 60.692 60.000 4.78 0.00 46.85 4.00
3124 3395 1.354101 ACATCCGGGGTGTTACAAGA 58.646 50.000 7.23 0.00 0.00 3.02
3127 3398 4.304048 AAATTACATCCGGGGTGTTACA 57.696 40.909 19.71 3.63 0.00 2.41
3128 3399 4.576053 GGTAAATTACATCCGGGGTGTTAC 59.424 45.833 19.71 14.09 0.00 2.50
3130 3401 3.267551 AGGTAAATTACATCCGGGGTGTT 59.732 43.478 19.71 2.60 0.00 3.32
3131 3402 2.848071 AGGTAAATTACATCCGGGGTGT 59.152 45.455 18.45 18.45 0.00 4.16
3134 3405 5.870978 CGTATAAGGTAAATTACATCCGGGG 59.129 44.000 0.00 0.00 0.00 5.73
3135 3406 6.458210 ACGTATAAGGTAAATTACATCCGGG 58.542 40.000 0.00 0.00 0.00 5.73
3138 3409 9.591792 GGGATACGTATAAGGTAAATTACATCC 57.408 37.037 8.34 1.14 37.60 3.51
3141 3412 9.762933 GTTGGGATACGTATAAGGTAAATTACA 57.237 33.333 8.34 0.00 37.60 2.41
3142 3413 9.987272 AGTTGGGATACGTATAAGGTAAATTAC 57.013 33.333 8.34 0.00 37.60 1.89
3145 3416 8.488308 AGAGTTGGGATACGTATAAGGTAAAT 57.512 34.615 8.34 0.00 37.60 1.40
3147 3418 7.685155 GCAAGAGTTGGGATACGTATAAGGTAA 60.685 40.741 8.34 0.00 37.60 2.85
3148 3419 6.239120 GCAAGAGTTGGGATACGTATAAGGTA 60.239 42.308 8.34 0.00 37.60 3.08
3149 3420 5.452917 GCAAGAGTTGGGATACGTATAAGGT 60.453 44.000 8.34 0.00 37.60 3.50
3150 3421 4.989168 GCAAGAGTTGGGATACGTATAAGG 59.011 45.833 8.34 0.00 37.60 2.69
3151 3422 4.989168 GGCAAGAGTTGGGATACGTATAAG 59.011 45.833 8.34 0.00 37.60 1.73
3152 3423 4.500205 CGGCAAGAGTTGGGATACGTATAA 60.500 45.833 8.34 0.00 37.60 0.98
3153 3424 3.005050 CGGCAAGAGTTGGGATACGTATA 59.995 47.826 8.34 0.00 37.60 1.47
3154 3425 2.223971 CGGCAAGAGTTGGGATACGTAT 60.224 50.000 8.05 8.05 37.60 3.06
3155 3426 1.135527 CGGCAAGAGTTGGGATACGTA 59.864 52.381 0.00 0.00 37.60 3.57
3156 3427 0.108329 CGGCAAGAGTTGGGATACGT 60.108 55.000 0.00 0.00 37.60 3.57
3157 3428 0.108329 ACGGCAAGAGTTGGGATACG 60.108 55.000 0.00 0.00 37.60 3.06
3158 3429 2.109425 AACGGCAAGAGTTGGGATAC 57.891 50.000 0.00 0.00 0.00 2.24
3159 3430 2.617021 GGAAACGGCAAGAGTTGGGATA 60.617 50.000 0.00 0.00 31.43 2.59
3160 3431 1.534729 GAAACGGCAAGAGTTGGGAT 58.465 50.000 0.00 0.00 31.43 3.85
3161 3432 0.536460 GGAAACGGCAAGAGTTGGGA 60.536 55.000 0.00 0.00 31.43 4.37
3162 3433 1.956802 GGAAACGGCAAGAGTTGGG 59.043 57.895 0.00 0.00 31.43 4.12
3175 3446 3.752412 AAATAACTTAGCGCCGGAAAC 57.248 42.857 5.05 0.00 0.00 2.78
3176 3447 6.439675 AATAAAATAACTTAGCGCCGGAAA 57.560 33.333 5.05 0.00 0.00 3.13
3177 3448 6.439675 AAATAAAATAACTTAGCGCCGGAA 57.560 33.333 5.05 0.00 0.00 4.30
3178 3449 5.007921 GGAAATAAAATAACTTAGCGCCGGA 59.992 40.000 5.05 0.00 0.00 5.14
3179 3450 5.008316 AGGAAATAAAATAACTTAGCGCCGG 59.992 40.000 2.29 0.00 0.00 6.13
3180 3451 6.056428 AGGAAATAAAATAACTTAGCGCCG 57.944 37.500 2.29 0.00 0.00 6.46
3181 3452 6.134061 CGAGGAAATAAAATAACTTAGCGCC 58.866 40.000 2.29 0.00 0.00 6.53
3182 3453 6.134061 CCGAGGAAATAAAATAACTTAGCGC 58.866 40.000 0.00 0.00 0.00 5.92
3183 3454 6.259387 ACCCGAGGAAATAAAATAACTTAGCG 59.741 38.462 0.00 0.00 0.00 4.26
3184 3455 7.517893 CGACCCGAGGAAATAAAATAACTTAGC 60.518 40.741 0.00 0.00 0.00 3.09
3185 3456 7.493645 ACGACCCGAGGAAATAAAATAACTTAG 59.506 37.037 0.00 0.00 0.00 2.18
3186 3457 7.330262 ACGACCCGAGGAAATAAAATAACTTA 58.670 34.615 0.00 0.00 0.00 2.24
3187 3458 6.175471 ACGACCCGAGGAAATAAAATAACTT 58.825 36.000 0.00 0.00 0.00 2.66
3188 3459 5.737860 ACGACCCGAGGAAATAAAATAACT 58.262 37.500 0.00 0.00 0.00 2.24
3189 3460 6.128200 ACAACGACCCGAGGAAATAAAATAAC 60.128 38.462 0.00 0.00 0.00 1.89
3190 3461 5.939296 ACAACGACCCGAGGAAATAAAATAA 59.061 36.000 0.00 0.00 0.00 1.40
3191 3462 5.490159 ACAACGACCCGAGGAAATAAAATA 58.510 37.500 0.00 0.00 0.00 1.40
3192 3463 4.329392 ACAACGACCCGAGGAAATAAAAT 58.671 39.130 0.00 0.00 0.00 1.82
3193 3464 3.742385 ACAACGACCCGAGGAAATAAAA 58.258 40.909 0.00 0.00 0.00 1.52
3194 3465 3.244146 TGACAACGACCCGAGGAAATAAA 60.244 43.478 0.00 0.00 0.00 1.40
3195 3466 2.299582 TGACAACGACCCGAGGAAATAA 59.700 45.455 0.00 0.00 0.00 1.40
3196 3467 1.894466 TGACAACGACCCGAGGAAATA 59.106 47.619 0.00 0.00 0.00 1.40
3197 3468 0.682852 TGACAACGACCCGAGGAAAT 59.317 50.000 0.00 0.00 0.00 2.17
3198 3469 0.682852 ATGACAACGACCCGAGGAAA 59.317 50.000 0.00 0.00 0.00 3.13
3199 3470 0.037697 CATGACAACGACCCGAGGAA 60.038 55.000 0.00 0.00 0.00 3.36
3200 3471 1.589630 CATGACAACGACCCGAGGA 59.410 57.895 0.00 0.00 0.00 3.71
3201 3472 2.100631 GCATGACAACGACCCGAGG 61.101 63.158 0.00 0.00 0.00 4.63
3202 3473 0.740868 ATGCATGACAACGACCCGAG 60.741 55.000 0.00 0.00 0.00 4.63
3203 3474 0.739462 GATGCATGACAACGACCCGA 60.739 55.000 2.46 0.00 0.00 5.14
3204 3475 0.740868 AGATGCATGACAACGACCCG 60.741 55.000 2.46 0.00 0.00 5.28
3205 3476 1.009829 GAGATGCATGACAACGACCC 58.990 55.000 2.46 0.00 0.00 4.46
3206 3477 1.725641 TGAGATGCATGACAACGACC 58.274 50.000 2.46 0.00 0.00 4.79
3207 3478 4.746611 TGATATGAGATGCATGACAACGAC 59.253 41.667 2.46 0.00 37.87 4.34
3208 3479 4.947645 TGATATGAGATGCATGACAACGA 58.052 39.130 2.46 0.00 37.87 3.85
3209 3480 5.178809 ACATGATATGAGATGCATGACAACG 59.821 40.000 2.46 0.00 40.29 4.10
3210 3481 6.204108 TGACATGATATGAGATGCATGACAAC 59.796 38.462 2.46 1.72 39.26 3.32
3211 3482 6.292923 TGACATGATATGAGATGCATGACAA 58.707 36.000 2.46 0.00 39.26 3.18
3212 3483 5.860611 TGACATGATATGAGATGCATGACA 58.139 37.500 2.46 4.19 40.29 3.58
3213 3484 6.594159 TGATGACATGATATGAGATGCATGAC 59.406 38.462 2.46 0.00 40.29 3.06
3214 3485 6.707290 TGATGACATGATATGAGATGCATGA 58.293 36.000 2.46 0.00 40.29 3.07
3215 3486 6.985188 TGATGACATGATATGAGATGCATG 57.015 37.500 2.46 0.00 42.75 4.06
3230 3501 4.400529 AATGCAATGCACATGATGACAT 57.599 36.364 11.23 0.00 43.04 3.06
3231 3502 3.878160 AATGCAATGCACATGATGACA 57.122 38.095 11.23 0.00 43.04 3.58
3232 3503 3.242284 GCAAATGCAATGCACATGATGAC 60.242 43.478 21.43 4.57 43.04 3.06
3233 3504 2.933260 GCAAATGCAATGCACATGATGA 59.067 40.909 21.43 0.00 43.04 2.92
3234 3505 3.317744 GCAAATGCAATGCACATGATG 57.682 42.857 21.43 12.69 43.04 3.07
3247 3518 1.643810 GACGAACACGAATGCAAATGC 59.356 47.619 0.00 0.00 42.50 3.56
3248 3519 3.155998 GAGACGAACACGAATGCAAATG 58.844 45.455 0.00 0.00 0.00 2.32
3249 3520 2.805671 TGAGACGAACACGAATGCAAAT 59.194 40.909 0.00 0.00 0.00 2.32
3250 3521 2.205911 TGAGACGAACACGAATGCAAA 58.794 42.857 0.00 0.00 0.00 3.68
3251 3522 1.859383 TGAGACGAACACGAATGCAA 58.141 45.000 0.00 0.00 0.00 4.08
3252 3523 1.726248 CATGAGACGAACACGAATGCA 59.274 47.619 0.00 0.00 0.00 3.96
3253 3524 1.527793 GCATGAGACGAACACGAATGC 60.528 52.381 0.00 0.00 33.00 3.56
3254 3525 1.726248 TGCATGAGACGAACACGAATG 59.274 47.619 0.00 0.00 0.00 2.67
3255 3526 2.078849 TGCATGAGACGAACACGAAT 57.921 45.000 0.00 0.00 0.00 3.34
3256 3527 1.992667 GATGCATGAGACGAACACGAA 59.007 47.619 2.46 0.00 0.00 3.85
3257 3528 1.629013 GATGCATGAGACGAACACGA 58.371 50.000 2.46 0.00 0.00 4.35
3258 3529 0.647410 GGATGCATGAGACGAACACG 59.353 55.000 2.46 0.00 0.00 4.49
3259 3530 0.647410 CGGATGCATGAGACGAACAC 59.353 55.000 2.46 0.00 0.00 3.32
3260 3531 0.530288 TCGGATGCATGAGACGAACA 59.470 50.000 2.46 0.00 0.00 3.18
3261 3532 1.203928 CTCGGATGCATGAGACGAAC 58.796 55.000 2.46 0.00 34.04 3.95
3262 3533 0.528466 GCTCGGATGCATGAGACGAA 60.528 55.000 16.17 1.71 34.04 3.85
3263 3534 1.066422 GCTCGGATGCATGAGACGA 59.934 57.895 16.17 13.19 34.04 4.20
3264 3535 1.227060 TGCTCGGATGCATGAGACG 60.227 57.895 16.17 10.00 38.12 4.18
3265 3536 4.842292 TGCTCGGATGCATGAGAC 57.158 55.556 16.17 9.01 38.12 3.36
3280 3551 1.211709 CGGACAACGGGGAAAATGC 59.788 57.895 0.00 0.00 39.42 3.56
3292 3563 3.855630 CGGAATGCAAAACGGACAA 57.144 47.368 0.00 0.00 0.00 3.18
3298 3569 1.801512 GAGCGCCGGAATGCAAAAC 60.802 57.895 5.05 0.00 0.00 2.43
3299 3570 2.566010 GAGCGCCGGAATGCAAAA 59.434 55.556 5.05 0.00 0.00 2.44
3300 3571 2.529454 TAGGAGCGCCGGAATGCAAA 62.529 55.000 5.05 0.00 39.96 3.68
3302 3573 2.715532 GATAGGAGCGCCGGAATGCA 62.716 60.000 5.05 0.00 39.96 3.96
3303 3574 2.029844 GATAGGAGCGCCGGAATGC 61.030 63.158 5.05 5.46 39.96 3.56
3304 3575 0.389166 GAGATAGGAGCGCCGGAATG 60.389 60.000 5.05 0.00 39.96 2.67
3305 3576 0.827925 TGAGATAGGAGCGCCGGAAT 60.828 55.000 5.05 0.00 39.96 3.01
3306 3577 0.827925 ATGAGATAGGAGCGCCGGAA 60.828 55.000 5.05 0.00 39.96 4.30
3307 3578 1.228583 ATGAGATAGGAGCGCCGGA 60.229 57.895 5.05 0.00 39.96 5.14
3308 3579 1.214062 GATGAGATAGGAGCGCCGG 59.786 63.158 2.29 0.00 39.96 6.13
3309 3580 1.214062 GGATGAGATAGGAGCGCCG 59.786 63.158 2.29 0.00 39.96 6.46
3310 3581 1.214062 CGGATGAGATAGGAGCGCC 59.786 63.158 2.29 0.00 0.00 6.53
3311 3582 1.214062 CCGGATGAGATAGGAGCGC 59.786 63.158 0.00 0.00 0.00 5.92
3312 3583 0.242286 CACCGGATGAGATAGGAGCG 59.758 60.000 9.46 0.00 0.00 5.03
3313 3584 0.605589 CCACCGGATGAGATAGGAGC 59.394 60.000 9.46 0.00 0.00 4.70
3314 3585 1.889829 GACCACCGGATGAGATAGGAG 59.110 57.143 9.46 0.00 0.00 3.69
3315 3586 1.480683 GGACCACCGGATGAGATAGGA 60.481 57.143 9.46 0.00 0.00 2.94
3317 3588 2.002505 AGGACCACCGGATGAGATAG 57.997 55.000 9.46 0.00 41.83 2.08
3318 3589 2.471815 AAGGACCACCGGATGAGATA 57.528 50.000 9.46 0.00 41.83 1.98
3321 5535 0.905357 AGAAAGGACCACCGGATGAG 59.095 55.000 9.46 0.00 41.83 2.90
3327 5541 1.900486 AGAAGGTAGAAAGGACCACCG 59.100 52.381 0.00 0.00 39.65 4.94
3328 5542 4.368565 AAAGAAGGTAGAAAGGACCACC 57.631 45.455 0.00 0.00 39.65 4.61
3331 5545 4.451435 CACGAAAAGAAGGTAGAAAGGACC 59.549 45.833 0.00 0.00 37.22 4.46
3332 5546 5.050295 CACACGAAAAGAAGGTAGAAAGGAC 60.050 44.000 0.00 0.00 0.00 3.85
3333 5547 5.054477 CACACGAAAAGAAGGTAGAAAGGA 58.946 41.667 0.00 0.00 0.00 3.36
3335 5549 5.277345 CCACACACGAAAAGAAGGTAGAAAG 60.277 44.000 0.00 0.00 0.00 2.62
3340 5554 2.485835 CCCCACACACGAAAAGAAGGTA 60.486 50.000 0.00 0.00 0.00 3.08
3342 5556 0.951558 CCCCACACACGAAAAGAAGG 59.048 55.000 0.00 0.00 0.00 3.46
3344 5558 0.256464 ACCCCCACACACGAAAAGAA 59.744 50.000 0.00 0.00 0.00 2.52
3346 5560 0.383949 CAACCCCCACACACGAAAAG 59.616 55.000 0.00 0.00 0.00 2.27
3350 5564 0.034380 TTTTCAACCCCCACACACGA 60.034 50.000 0.00 0.00 0.00 4.35
3353 5567 2.436173 GGAAATTTTCAACCCCCACACA 59.564 45.455 11.09 0.00 0.00 3.72
3355 5569 1.689273 CGGAAATTTTCAACCCCCACA 59.311 47.619 11.09 0.00 0.00 4.17
3356 5570 1.001520 CCGGAAATTTTCAACCCCCAC 59.998 52.381 11.09 0.00 0.00 4.61
3357 5571 1.133136 TCCGGAAATTTTCAACCCCCA 60.133 47.619 0.00 0.00 0.00 4.96
3358 5572 1.634960 TCCGGAAATTTTCAACCCCC 58.365 50.000 0.00 0.00 0.00 5.40
3359 5573 3.595173 CAATCCGGAAATTTTCAACCCC 58.405 45.455 9.01 0.00 0.00 4.95
3360 5574 3.259625 TCCAATCCGGAAATTTTCAACCC 59.740 43.478 9.01 0.00 42.52 4.11
3361 5575 4.529109 TCCAATCCGGAAATTTTCAACC 57.471 40.909 9.01 0.00 42.52 3.77
3372 5586 1.550524 CAAGTCTCAGTCCAATCCGGA 59.449 52.381 6.61 6.61 43.61 5.14
3373 5587 2.009042 GCAAGTCTCAGTCCAATCCGG 61.009 57.143 0.00 0.00 0.00 5.14
3374 5588 1.363744 GCAAGTCTCAGTCCAATCCG 58.636 55.000 0.00 0.00 0.00 4.18
3376 5590 2.479566 TGGCAAGTCTCAGTCCAATC 57.520 50.000 0.00 0.00 0.00 2.67
3378 5592 1.815408 GCTTGGCAAGTCTCAGTCCAA 60.815 52.381 26.71 0.00 35.70 3.53
3379 5593 0.250467 GCTTGGCAAGTCTCAGTCCA 60.250 55.000 26.71 0.00 0.00 4.02
3380 5594 1.294659 CGCTTGGCAAGTCTCAGTCC 61.295 60.000 26.71 7.98 0.00 3.85
3381 5595 1.294659 CCGCTTGGCAAGTCTCAGTC 61.295 60.000 26.71 8.68 0.00 3.51
3383 5597 3.571119 CCGCTTGGCAAGTCTCAG 58.429 61.111 26.71 13.58 0.00 3.35
3394 5608 1.467342 GTAGTAAACCAAGGCCGCTTG 59.533 52.381 0.00 0.00 0.00 4.01
3396 5610 3.545724 GTAGTAAACCAAGGCCGCT 57.454 52.632 0.00 0.00 0.00 5.52
3421 5635 0.390124 TACGAAACTTGACAGGCGGT 59.610 50.000 0.00 0.00 0.00 5.68
3423 5637 0.788391 GGTACGAAACTTGACAGGCG 59.212 55.000 0.00 0.00 0.00 5.52
3424 5638 1.873698 TGGTACGAAACTTGACAGGC 58.126 50.000 0.00 0.00 0.00 4.85
3425 5639 4.320202 CCAAATGGTACGAAACTTGACAGG 60.320 45.833 0.00 0.00 0.00 4.00
3426 5640 4.513692 TCCAAATGGTACGAAACTTGACAG 59.486 41.667 0.00 0.00 36.34 3.51
3428 5642 4.514066 AGTCCAAATGGTACGAAACTTGAC 59.486 41.667 0.00 0.00 36.34 3.18
3429 5643 4.710324 AGTCCAAATGGTACGAAACTTGA 58.290 39.130 0.00 0.00 36.34 3.02
3430 5644 5.432885 AAGTCCAAATGGTACGAAACTTG 57.567 39.130 0.00 0.00 36.34 3.16
3431 5645 4.212636 CGAAGTCCAAATGGTACGAAACTT 59.787 41.667 0.00 0.82 36.34 2.66
3432 5646 3.744426 CGAAGTCCAAATGGTACGAAACT 59.256 43.478 0.00 0.00 36.34 2.66
3433 5647 3.495753 ACGAAGTCCAAATGGTACGAAAC 59.504 43.478 0.00 0.00 29.74 2.78
3434 5648 3.731089 ACGAAGTCCAAATGGTACGAAA 58.269 40.909 0.00 0.00 29.74 3.46
3435 5649 3.389925 ACGAAGTCCAAATGGTACGAA 57.610 42.857 0.00 0.00 29.74 3.85
3436 5650 3.389925 AACGAAGTCCAAATGGTACGA 57.610 42.857 0.00 0.00 45.00 3.43
3437 5651 3.495377 TCAAACGAAGTCCAAATGGTACG 59.505 43.478 0.00 4.52 45.00 3.67
3438 5652 5.622770 ATCAAACGAAGTCCAAATGGTAC 57.377 39.130 0.00 0.00 45.00 3.34
3439 5653 6.469410 AGTATCAAACGAAGTCCAAATGGTA 58.531 36.000 0.00 0.00 45.00 3.25
3440 5654 5.313712 AGTATCAAACGAAGTCCAAATGGT 58.686 37.500 0.00 0.00 45.00 3.55
3442 5656 5.411361 TGGAGTATCAAACGAAGTCCAAATG 59.589 40.000 0.00 0.00 36.47 2.32
3444 5658 4.963373 TGGAGTATCAAACGAAGTCCAAA 58.037 39.130 0.00 0.00 36.47 3.28
3445 5659 4.610605 TGGAGTATCAAACGAAGTCCAA 57.389 40.909 0.00 0.00 36.47 3.53
3446 5660 4.312443 GTTGGAGTATCAAACGAAGTCCA 58.688 43.478 0.00 0.00 39.61 4.02
3454 5668 5.287170 GGTTAACCGTTGGAGTATCAAAC 57.713 43.478 9.34 0.00 45.69 2.93
3469 5683 0.967380 TCTCGGTCCCTCGGTTAACC 60.967 60.000 15.13 15.13 0.00 2.85
3473 5687 1.982938 CCTTCTCGGTCCCTCGGTT 60.983 63.158 0.00 0.00 0.00 4.44
3474 5688 2.362632 CCTTCTCGGTCCCTCGGT 60.363 66.667 0.00 0.00 0.00 4.69
3475 5689 3.839432 GCCTTCTCGGTCCCTCGG 61.839 72.222 0.00 0.00 34.25 4.63
3476 5690 3.839432 GGCCTTCTCGGTCCCTCG 61.839 72.222 0.00 0.00 34.25 4.63
3477 5691 2.364448 AGGCCTTCTCGGTCCCTC 60.364 66.667 0.00 0.00 38.54 4.30
3478 5692 2.364448 GAGGCCTTCTCGGTCCCT 60.364 66.667 6.77 0.00 38.54 4.20
3485 5699 0.249911 AACACACACGAGGCCTTCTC 60.250 55.000 6.77 0.00 39.10 2.87
3486 5700 0.532862 CAACACACACGAGGCCTTCT 60.533 55.000 6.77 0.00 0.00 2.85
3488 5702 2.186826 GCAACACACACGAGGCCTT 61.187 57.895 6.77 0.00 0.00 4.35
3489 5703 2.591715 GCAACACACACGAGGCCT 60.592 61.111 3.86 3.86 0.00 5.19
3490 5704 2.896801 CTGCAACACACACGAGGCC 61.897 63.158 0.00 0.00 0.00 5.19
3491 5705 2.633657 CTGCAACACACACGAGGC 59.366 61.111 0.00 0.00 0.00 4.70
3492 5706 2.633657 GCTGCAACACACACGAGG 59.366 61.111 0.00 0.00 0.00 4.63
3493 5707 2.633657 GGCTGCAACACACACGAG 59.366 61.111 0.50 0.00 0.00 4.18
3495 5709 2.769539 TTGGGCTGCAACACACACG 61.770 57.895 0.50 0.00 0.00 4.49
3497 5711 1.680314 TGTTGGGCTGCAACACACA 60.680 52.632 0.50 5.04 37.59 3.72
3498 5712 3.205395 TGTTGGGCTGCAACACAC 58.795 55.556 0.50 2.70 37.59 3.82
3501 5715 0.969917 AAGTGTGTTGGGCTGCAACA 60.970 50.000 0.50 5.38 39.86 3.33
3502 5716 0.249031 GAAGTGTGTTGGGCTGCAAC 60.249 55.000 0.50 0.00 0.00 4.17
3504 5718 1.827789 GGAAGTGTGTTGGGCTGCA 60.828 57.895 0.50 0.00 0.00 4.41
3505 5719 1.391157 TTGGAAGTGTGTTGGGCTGC 61.391 55.000 0.00 0.00 0.00 5.25
3506 5720 1.331214 ATTGGAAGTGTGTTGGGCTG 58.669 50.000 0.00 0.00 0.00 4.85
3507 5721 2.086610 AATTGGAAGTGTGTTGGGCT 57.913 45.000 0.00 0.00 0.00 5.19
3510 5870 2.482864 GCCAAATTGGAAGTGTGTTGG 58.517 47.619 17.47 0.00 40.96 3.77
3514 5874 1.047002 TGGGCCAAATTGGAAGTGTG 58.953 50.000 17.47 0.00 40.96 3.82
3516 5876 2.877786 GTTTTGGGCCAAATTGGAAGTG 59.122 45.455 30.82 0.00 40.96 3.16
3519 5879 1.143889 GGGTTTTGGGCCAAATTGGAA 59.856 47.619 30.82 14.14 40.96 3.53
3521 5881 0.475906 TGGGTTTTGGGCCAAATTGG 59.524 50.000 30.82 7.84 41.55 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.