Multiple sequence alignment - TraesCS1A01G191100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G191100 chr1A 100.000 2342 0 0 1 2342 345307243 345304902 0.000000e+00 4325.0
1 TraesCS1A01G191100 chr1A 93.443 61 4 0 1060 1120 345306050 345305990 8.910000e-15 91.6
2 TraesCS1A01G191100 chr1A 93.443 61 4 0 1194 1254 345306184 345306124 8.910000e-15 91.6
3 TraesCS1A01G191100 chr2D 92.761 1257 86 3 1 1254 34666061 34664807 0.000000e+00 1812.0
4 TraesCS1A01G191100 chr2D 91.415 1258 99 7 1 1254 626639654 626638402 0.000000e+00 1716.0
5 TraesCS1A01G191100 chr2D 89.850 601 50 5 1060 1660 34664325 34663736 0.000000e+00 761.0
6 TraesCS1A01G191100 chr2D 89.697 495 40 5 1166 1660 626637756 626637273 2.560000e-174 621.0
7 TraesCS1A01G191100 chr2D 96.875 32 1 0 1228 1259 626637850 626637819 1.000000e-03 54.7
8 TraesCS1A01G191100 chr2B 92.093 1290 63 17 1 1259 144248698 144247417 0.000000e+00 1781.0
9 TraesCS1A01G191100 chr2B 85.854 615 61 17 1060 1660 144247482 144246880 4.250000e-177 630.0
10 TraesCS1A01G191100 chr2B 90.598 117 10 1 1548 1663 726601418 726601534 1.120000e-33 154.0
11 TraesCS1A01G191100 chr2B 94.828 58 3 0 1063 1120 144247320 144247263 8.910000e-15 91.6
12 TraesCS1A01G191100 chr1D 91.693 1276 82 13 1 1254 137633156 137631883 0.000000e+00 1748.0
13 TraesCS1A01G191100 chr1D 87.154 615 44 15 1084 1675 137631116 137630514 0.000000e+00 665.0
14 TraesCS1A01G191100 chr1D 89.313 131 13 1 1532 1661 50031553 50031683 1.860000e-36 163.0
15 TraesCS1A01G191100 chr3D 93.118 1177 79 2 1 1177 45767663 45768837 0.000000e+00 1724.0
16 TraesCS1A01G191100 chr3D 94.234 659 35 2 1658 2313 477629010 477629668 0.000000e+00 1003.0
17 TraesCS1A01G191100 chr3D 89.293 495 42 5 1166 1660 45769718 45770201 5.530000e-171 610.0
18 TraesCS1A01G191100 chr5B 86.698 1278 134 13 1 1254 456275699 456274434 0.000000e+00 1386.0
19 TraesCS1A01G191100 chr5B 84.146 574 52 25 1129 1667 456274114 456273545 9.590000e-144 520.0
20 TraesCS1A01G191100 chr3B 90.612 245 9 2 2029 2267 636867690 636867926 1.750000e-81 313.0
21 TraesCS1A01G191100 chr7D 76.007 546 98 22 371 911 22032260 22031743 3.860000e-63 252.0
22 TraesCS1A01G191100 chr5A 78.700 277 32 18 290 558 288901490 288901747 2.410000e-35 159.0
23 TraesCS1A01G191100 chr4A 84.472 161 9 9 1874 2032 722486418 722486272 6.750000e-31 145.0
24 TraesCS1A01G191100 chr4A 89.773 88 8 1 1691 1778 722486668 722486582 6.840000e-21 111.0
25 TraesCS1A01G191100 chr4A 95.161 62 3 0 1591 1652 520686438 520686499 5.330000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G191100 chr1A 345304902 345307243 2341 True 1502.733333 4325 95.628667 1 2342 3 chr1A.!!$R1 2341
1 TraesCS1A01G191100 chr2D 34663736 34666061 2325 True 1286.500000 1812 91.305500 1 1660 2 chr2D.!!$R1 1659
2 TraesCS1A01G191100 chr2D 626637273 626639654 2381 True 797.233333 1716 92.662333 1 1660 3 chr2D.!!$R2 1659
3 TraesCS1A01G191100 chr2B 144246880 144248698 1818 True 834.200000 1781 90.925000 1 1660 3 chr2B.!!$R1 1659
4 TraesCS1A01G191100 chr1D 137630514 137633156 2642 True 1206.500000 1748 89.423500 1 1675 2 chr1D.!!$R1 1674
5 TraesCS1A01G191100 chr3D 45767663 45770201 2538 False 1167.000000 1724 91.205500 1 1660 2 chr3D.!!$F2 1659
6 TraesCS1A01G191100 chr3D 477629010 477629668 658 False 1003.000000 1003 94.234000 1658 2313 1 chr3D.!!$F1 655
7 TraesCS1A01G191100 chr5B 456273545 456275699 2154 True 953.000000 1386 85.422000 1 1667 2 chr5B.!!$R1 1666
8 TraesCS1A01G191100 chr7D 22031743 22032260 517 True 252.000000 252 76.007000 371 911 1 chr7D.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 925 1.002134 CTTGGAAGCATCACCGGGT 60.002 57.895 6.32 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 3592 0.178992 CCCTGTTCTTCTTGCCACCA 60.179 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.031919 ATTGGTCGCCTTCGTGCA 59.968 55.556 0.00 0.00 36.96 4.57
59 60 2.826128 TGCTGTCTGAACTCCGAAGTAT 59.174 45.455 0.00 0.00 33.48 2.12
99 100 7.607607 ACAGACAAACACAATATTCATGCTCTA 59.392 33.333 0.00 0.00 0.00 2.43
132 133 5.411361 TGTCTGTACAATATTCACCAGTTGC 59.589 40.000 0.00 0.00 30.91 4.17
192 193 2.435805 CCTGCTGCATCCTTTCCTACTA 59.564 50.000 1.31 0.00 0.00 1.82
200 201 5.720041 TGCATCCTTTCCTACTACAGTAGTT 59.280 40.000 18.56 3.53 44.88 2.24
206 207 7.508296 TCCTTTCCTACTACAGTAGTTGTTCTT 59.492 37.037 18.56 0.00 44.88 2.52
207 208 8.800332 CCTTTCCTACTACAGTAGTTGTTCTTA 58.200 37.037 18.56 0.00 44.88 2.10
315 324 4.520111 TGGCTAATGGATTACATGCATGTC 59.480 41.667 34.54 20.74 40.66 3.06
516 526 8.419076 AGTACCACATTTTCATTTTTGTTGTC 57.581 30.769 0.00 0.00 0.00 3.18
524 534 4.746836 TCATTTTTGTTGTCGTTTTCGC 57.253 36.364 0.00 0.00 43.73 4.70
635 645 5.827797 ACAGTTGCTAAGAAAAATCTGGACA 59.172 36.000 0.00 0.00 0.00 4.02
799 809 4.254709 ACTGGCTGCTGCGAACCA 62.255 61.111 9.65 7.69 40.82 3.67
891 902 1.183549 CAGTAGTAAGCGAGGTGGGT 58.816 55.000 0.00 0.00 0.00 4.51
900 911 1.293498 CGAGGTGGGTGAGACTTGG 59.707 63.158 0.00 0.00 0.00 3.61
914 925 1.002134 CTTGGAAGCATCACCGGGT 60.002 57.895 6.32 0.00 0.00 5.28
973 984 1.669760 GCCACCGGAACATTGTCGA 60.670 57.895 9.46 0.00 0.00 4.20
976 987 1.508632 CACCGGAACATTGTCGAGTT 58.491 50.000 9.46 0.00 0.00 3.01
980 991 2.131972 CGGAACATTGTCGAGTTGTCA 58.868 47.619 0.00 0.00 0.00 3.58
991 1002 2.095008 TCGAGTTGTCAGAGCATCACTC 60.095 50.000 0.00 0.00 46.66 3.51
1021 1032 3.420214 GAGCATCGTCGGGCCGTTA 62.420 63.158 27.32 12.91 0.00 3.18
1025 1036 0.870307 CATCGTCGGGCCGTTAGAAG 60.870 60.000 27.32 15.93 0.00 2.85
1098 1109 4.521062 GTGGAGCATCGCCGAGCT 62.521 66.667 10.14 10.14 45.25 4.09
1122 1289 0.465705 GAGGATCGTGGGAGCATCAA 59.534 55.000 0.00 0.00 39.07 2.57
1205 2478 2.359900 GAGGATTGTCGGAGCATTGTT 58.640 47.619 0.00 0.00 0.00 2.83
1265 2609 3.567797 GAGCATTGCCGAGACGCC 61.568 66.667 4.70 0.00 0.00 5.68
1282 2626 2.885644 CGGAGGATCGTTGGTGCG 60.886 66.667 0.00 0.00 34.37 5.34
1303 2647 4.783621 GTGGAGCATCGCCTGGCA 62.784 66.667 20.29 6.38 34.37 4.92
1304 2648 4.032452 TGGAGCATCGCCTGGCAA 62.032 61.111 20.29 0.00 34.37 4.52
1317 2661 1.368345 CTGGCAATCGGAACATCGCA 61.368 55.000 0.00 0.00 0.00 5.10
1399 2743 2.089980 GTGGAGCAATGAAGCATGACT 58.910 47.619 0.00 0.00 36.85 3.41
1400 2744 3.273434 GTGGAGCAATGAAGCATGACTA 58.727 45.455 0.00 0.00 36.85 2.59
1404 2748 4.186926 GAGCAATGAAGCATGACTAGTGA 58.813 43.478 0.00 0.00 36.85 3.41
1406 2750 4.575236 AGCAATGAAGCATGACTAGTGATG 59.425 41.667 17.03 17.03 36.85 3.07
1407 2751 4.334759 GCAATGAAGCATGACTAGTGATGT 59.665 41.667 21.25 4.80 0.00 3.06
1408 2752 5.163683 GCAATGAAGCATGACTAGTGATGTT 60.164 40.000 21.25 14.20 0.00 2.71
1409 2753 6.255950 CAATGAAGCATGACTAGTGATGTTG 58.744 40.000 21.25 13.99 0.00 3.33
1411 2755 3.988976 AGCATGACTAGTGATGTTGGT 57.011 42.857 21.25 2.50 0.00 3.67
1626 2972 0.940833 GCTAGGCGGCTGATCTTTTC 59.059 55.000 23.55 0.00 0.00 2.29
1689 3035 1.349627 GTTGCTGTGATGATCCGCG 59.650 57.895 0.00 0.00 0.00 6.46
1690 3036 1.815003 TTGCTGTGATGATCCGCGG 60.815 57.895 22.12 22.12 0.00 6.46
1785 3131 2.158871 TGCTATGATGTGATGAGCTGCA 60.159 45.455 1.02 0.00 34.19 4.41
1806 3152 7.622672 GCTGCAAAGATCATGTTTTTATGTTGG 60.623 37.037 0.00 0.00 0.00 3.77
1833 3179 3.308117 CCAATAGTACAAAGGCAGTCCCA 60.308 47.826 0.00 0.00 35.39 4.37
1835 3181 4.862641 ATAGTACAAAGGCAGTCCCAAT 57.137 40.909 0.00 0.00 35.39 3.16
1943 3291 2.215758 TGGGGGATTTGAGGGGGT 59.784 61.111 0.00 0.00 0.00 4.95
1952 3300 0.637195 TTTGAGGGGGTTGGGTGAAA 59.363 50.000 0.00 0.00 0.00 2.69
2037 3386 2.882137 CAAACAAGGCCCGAGTAAGAAA 59.118 45.455 0.00 0.00 0.00 2.52
2046 3395 6.060136 AGGCCCGAGTAAGAAATAAAATACC 58.940 40.000 0.00 0.00 0.00 2.73
2103 3452 8.259411 TCCGTTGGTGCTAATTTAGTTTATCTA 58.741 33.333 5.38 0.00 0.00 1.98
2128 3477 7.399523 AGTCTTAATTTCTAATTAAGCGTGCG 58.600 34.615 19.71 4.60 39.92 5.34
2166 3515 6.959606 AATAGGGTATACATGCTCTTCCAT 57.040 37.500 5.01 0.00 0.00 3.41
2214 3563 3.509137 TTGTCTGTGGTCGTCCGGC 62.509 63.158 0.00 0.00 36.30 6.13
2233 3582 2.052237 GCGTTGCAACTCGTGTGG 60.052 61.111 26.09 10.63 0.00 4.17
2243 3592 0.037326 ACTCGTGTGGCAATGACGAT 60.037 50.000 15.37 6.25 41.02 3.73
2257 3606 1.071542 TGACGATGGTGGCAAGAAGAA 59.928 47.619 0.00 0.00 0.00 2.52
2265 3614 0.843309 TGGCAAGAAGAACAGGGTCA 59.157 50.000 0.00 0.00 0.00 4.02
2272 3621 0.606401 AAGAACAGGGTCACGGCATG 60.606 55.000 0.00 0.00 0.00 4.06
2284 3633 1.136252 CACGGCATGTTCTTCTGTTCG 60.136 52.381 0.00 0.00 0.00 3.95
2285 3634 1.270094 ACGGCATGTTCTTCTGTTCGA 60.270 47.619 0.00 0.00 0.00 3.71
2286 3635 1.126846 CGGCATGTTCTTCTGTTCGAC 59.873 52.381 0.00 0.00 0.00 4.20
2287 3636 2.143122 GGCATGTTCTTCTGTTCGACA 58.857 47.619 0.00 0.00 0.00 4.35
2288 3637 2.096218 GGCATGTTCTTCTGTTCGACAC 60.096 50.000 0.00 0.00 0.00 3.67
2289 3638 2.543848 GCATGTTCTTCTGTTCGACACA 59.456 45.455 0.00 0.00 0.00 3.72
2290 3639 3.187227 GCATGTTCTTCTGTTCGACACAT 59.813 43.478 0.00 0.00 33.76 3.21
2291 3640 4.667668 GCATGTTCTTCTGTTCGACACATC 60.668 45.833 0.00 0.00 33.76 3.06
2292 3641 3.390135 TGTTCTTCTGTTCGACACATCC 58.610 45.455 0.00 0.00 33.76 3.51
2293 3642 3.069586 TGTTCTTCTGTTCGACACATCCT 59.930 43.478 0.00 0.00 33.76 3.24
2294 3643 4.279922 TGTTCTTCTGTTCGACACATCCTA 59.720 41.667 0.00 0.00 33.76 2.94
2295 3644 5.221362 TGTTCTTCTGTTCGACACATCCTAA 60.221 40.000 0.00 0.00 33.76 2.69
2296 3645 5.661056 TCTTCTGTTCGACACATCCTAAT 57.339 39.130 0.00 0.00 33.76 1.73
2297 3646 5.651530 TCTTCTGTTCGACACATCCTAATC 58.348 41.667 0.00 0.00 33.76 1.75
2298 3647 4.028852 TCTGTTCGACACATCCTAATCG 57.971 45.455 0.00 0.00 33.76 3.34
2299 3648 3.442625 TCTGTTCGACACATCCTAATCGT 59.557 43.478 0.00 0.00 33.76 3.73
2300 3649 3.507786 TGTTCGACACATCCTAATCGTG 58.492 45.455 0.00 0.00 36.03 4.35
2301 3650 3.191791 TGTTCGACACATCCTAATCGTGA 59.808 43.478 0.00 0.00 36.03 4.35
2302 3651 4.171005 GTTCGACACATCCTAATCGTGAA 58.829 43.478 0.00 0.00 36.03 3.18
2303 3652 4.028852 TCGACACATCCTAATCGTGAAG 57.971 45.455 0.00 0.00 36.03 3.02
2304 3653 3.442625 TCGACACATCCTAATCGTGAAGT 59.557 43.478 0.00 0.00 36.03 3.01
2305 3654 3.791887 CGACACATCCTAATCGTGAAGTC 59.208 47.826 0.00 0.00 34.69 3.01
2306 3655 4.674362 CGACACATCCTAATCGTGAAGTCA 60.674 45.833 0.00 0.00 34.69 3.41
2307 3656 4.748892 ACACATCCTAATCGTGAAGTCAG 58.251 43.478 0.00 0.00 34.69 3.51
2308 3657 4.462834 ACACATCCTAATCGTGAAGTCAGA 59.537 41.667 0.00 0.00 34.69 3.27
2309 3658 5.039984 CACATCCTAATCGTGAAGTCAGAG 58.960 45.833 0.00 0.00 32.23 3.35
2310 3659 3.784701 TCCTAATCGTGAAGTCAGAGC 57.215 47.619 0.00 0.00 0.00 4.09
2311 3660 3.357203 TCCTAATCGTGAAGTCAGAGCT 58.643 45.455 0.00 0.00 0.00 4.09
2312 3661 3.764434 TCCTAATCGTGAAGTCAGAGCTT 59.236 43.478 0.00 0.00 0.00 3.74
2313 3662 4.220821 TCCTAATCGTGAAGTCAGAGCTTT 59.779 41.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.620819 ACTTCGGAGTTCAGACAGCAT 59.379 47.619 0.00 0.00 29.87 3.79
59 60 5.183140 TGTTTGTCTGTCAGAGATATCACGA 59.817 40.000 1.75 0.00 31.63 4.35
99 100 7.385205 GTGAATATTGTACAGACATTATCCGCT 59.615 37.037 0.00 0.00 33.16 5.52
132 133 7.253684 GCTGAAGTAAACTACAACTATGCTACG 60.254 40.741 0.00 0.00 0.00 3.51
192 193 7.091443 GCATCTACACTAAGAACAACTACTGT 58.909 38.462 0.00 0.00 41.27 3.55
200 201 3.515502 AGCAGGCATCTACACTAAGAACA 59.484 43.478 0.00 0.00 0.00 3.18
206 207 3.821600 GCTACTAGCAGGCATCTACACTA 59.178 47.826 2.96 0.00 41.89 2.74
207 208 2.625790 GCTACTAGCAGGCATCTACACT 59.374 50.000 2.96 0.00 41.89 3.55
516 526 0.179248 GCGAGGAGAAAGCGAAAACG 60.179 55.000 0.00 0.00 0.00 3.60
524 534 0.179113 GAGGCTCTGCGAGGAGAAAG 60.179 60.000 7.40 0.00 35.52 2.62
569 579 3.282021 CCCGTGTTGAGAATGATCCATT 58.718 45.455 0.00 0.00 36.72 3.16
635 645 9.660544 ACCAATTAAGATTGCCCTCTTATTATT 57.339 29.630 6.06 2.76 41.06 1.40
891 902 1.338105 CGGTGATGCTTCCAAGTCTCA 60.338 52.381 0.00 0.00 0.00 3.27
900 911 3.195698 GCGACCCGGTGATGCTTC 61.196 66.667 0.00 0.00 0.00 3.86
914 925 1.511850 CAACAGTGATGTTCCAGCGA 58.488 50.000 0.00 0.00 0.00 4.93
954 965 1.671054 CGACAATGTTCCGGTGGCT 60.671 57.895 0.00 0.00 0.00 4.75
973 984 1.067283 CCGAGTGATGCTCTGACAACT 60.067 52.381 0.00 0.00 41.98 3.16
976 987 1.893062 CCCGAGTGATGCTCTGACA 59.107 57.895 0.00 0.00 41.98 3.58
980 991 2.898738 CAGCCCGAGTGATGCTCT 59.101 61.111 0.00 0.00 41.98 4.09
991 1002 4.923942 ATGCTCCATCGCAGCCCG 62.924 66.667 0.00 0.00 44.10 6.13
1021 1032 1.078848 GCAGCACCACCGATCTTCT 60.079 57.895 0.00 0.00 0.00 2.85
1025 1036 1.915614 CTGTTGCAGCACCACCGATC 61.916 60.000 0.00 0.00 0.00 3.69
1098 1109 4.770362 TCCCACGATCCTCCGGCA 62.770 66.667 0.00 0.00 0.00 5.69
1122 1289 1.598517 TGCTCCATCACAGCATCGT 59.401 52.632 0.00 0.00 42.09 3.73
1155 2406 1.218230 GCGATGCTCCGACAATCCTC 61.218 60.000 2.64 0.00 0.00 3.71
1182 2455 1.043116 ATGCTCCGACAATCCTCCGA 61.043 55.000 0.00 0.00 0.00 4.55
1191 2464 1.514678 GCACCAACAATGCTCCGACA 61.515 55.000 0.00 0.00 40.08 4.35
1205 2478 4.019312 TGCTCCATCGCAGCACCA 62.019 61.111 0.00 0.00 42.09 4.17
1265 2609 2.885644 CGCACCAACGATCCTCCG 60.886 66.667 0.00 0.00 34.06 4.63
1276 2620 2.786539 GATGCTCCACTGTCGCACCA 62.787 60.000 0.00 0.00 36.37 4.17
1282 2626 1.812922 CAGGCGATGCTCCACTGTC 60.813 63.158 0.00 0.00 0.00 3.51
1303 2647 1.009829 GCTTCTGCGATGTTCCGATT 58.990 50.000 0.00 0.00 0.00 3.34
1304 2648 0.108186 TGCTTCTGCGATGTTCCGAT 60.108 50.000 0.00 0.00 43.34 4.18
1399 2743 4.390603 GCGTGTAATTCACCAACATCACTA 59.609 41.667 0.00 0.00 43.51 2.74
1400 2744 3.188460 GCGTGTAATTCACCAACATCACT 59.812 43.478 0.00 0.00 43.51 3.41
1404 2748 2.415168 CGAGCGTGTAATTCACCAACAT 59.585 45.455 0.00 0.00 43.51 2.71
1406 2750 1.796459 ACGAGCGTGTAATTCACCAAC 59.204 47.619 0.00 0.00 43.51 3.77
1407 2751 2.063266 GACGAGCGTGTAATTCACCAA 58.937 47.619 0.00 0.00 43.51 3.67
1408 2752 1.000052 TGACGAGCGTGTAATTCACCA 60.000 47.619 0.00 0.00 43.51 4.17
1409 2753 1.389106 GTGACGAGCGTGTAATTCACC 59.611 52.381 0.00 0.00 43.51 4.02
1411 2755 1.705256 GGTGACGAGCGTGTAATTCA 58.295 50.000 0.00 0.00 0.00 2.57
1626 2972 4.766970 CAGCCGGCTGATCTTAGG 57.233 61.111 46.72 21.06 46.30 2.69
1759 3105 5.008712 CAGCTCATCACATCATAGCAACAAT 59.991 40.000 0.00 0.00 35.63 2.71
1806 3152 6.260271 GGACTGCCTTTGTACTATTGGATAAC 59.740 42.308 0.00 0.00 0.00 1.89
1833 3179 8.667463 GCACATAAAAATATTGTTTGGCAGATT 58.333 29.630 0.00 0.00 0.00 2.40
1835 3181 7.157347 TGCACATAAAAATATTGTTTGGCAGA 58.843 30.769 0.00 0.00 0.00 4.26
1899 3245 1.288932 CTCCAATCCCACCCCTCAAAT 59.711 52.381 0.00 0.00 0.00 2.32
1943 3291 1.357761 GATCCCCTTCCTTTCACCCAA 59.642 52.381 0.00 0.00 0.00 4.12
1952 3300 1.570979 GGATTTGGTGATCCCCTTCCT 59.429 52.381 0.00 0.00 39.79 3.36
2077 3426 7.107542 AGATAAACTAAATTAGCACCAACGGA 58.892 34.615 0.00 0.00 0.00 4.69
2103 3452 7.277098 TCGCACGCTTAATTAGAAATTAAGACT 59.723 33.333 25.48 12.75 41.63 3.24
2162 3511 2.827322 CTGACCAAATTGGAGCAATGGA 59.173 45.455 20.25 0.00 40.96 3.41
2166 3515 2.517959 CCTCTGACCAAATTGGAGCAA 58.482 47.619 20.25 6.67 40.96 3.91
2214 3563 3.636043 ACACGAGTTGCAACGCCG 61.636 61.111 31.13 31.13 36.47 6.46
2215 3564 2.052237 CACACGAGTTGCAACGCC 60.052 61.111 24.82 18.49 0.00 5.68
2227 3576 1.298157 ACCATCGTCATTGCCACACG 61.298 55.000 0.00 0.00 34.78 4.49
2229 3578 0.959867 CCACCATCGTCATTGCCACA 60.960 55.000 0.00 0.00 0.00 4.17
2233 3582 0.179156 CTTGCCACCATCGTCATTGC 60.179 55.000 0.00 0.00 0.00 3.56
2243 3592 0.178992 CCCTGTTCTTCTTGCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2257 3606 1.302511 GAACATGCCGTGACCCTGT 60.303 57.895 0.00 0.00 0.00 4.00
2265 3614 1.148310 CGAACAGAAGAACATGCCGT 58.852 50.000 0.00 0.00 0.00 5.68
2272 3621 3.654414 AGGATGTGTCGAACAGAAGAAC 58.346 45.455 0.00 0.00 43.64 3.01
2284 3633 4.744570 TGACTTCACGATTAGGATGTGTC 58.255 43.478 0.00 0.00 35.20 3.67
2285 3634 4.462834 TCTGACTTCACGATTAGGATGTGT 59.537 41.667 0.00 0.00 35.20 3.72
2286 3635 4.998788 TCTGACTTCACGATTAGGATGTG 58.001 43.478 0.00 0.00 34.96 3.21
2287 3636 4.440802 GCTCTGACTTCACGATTAGGATGT 60.441 45.833 0.00 0.00 0.00 3.06
2288 3637 4.047822 GCTCTGACTTCACGATTAGGATG 58.952 47.826 0.00 0.00 0.00 3.51
2289 3638 3.957497 AGCTCTGACTTCACGATTAGGAT 59.043 43.478 0.00 0.00 0.00 3.24
2290 3639 3.357203 AGCTCTGACTTCACGATTAGGA 58.643 45.455 0.00 0.00 0.00 2.94
2291 3640 3.791973 AGCTCTGACTTCACGATTAGG 57.208 47.619 0.00 0.00 0.00 2.69
2292 3641 5.061560 GTCAAAGCTCTGACTTCACGATTAG 59.938 44.000 13.08 0.00 42.11 1.73
2293 3642 4.923871 GTCAAAGCTCTGACTTCACGATTA 59.076 41.667 13.08 0.00 42.11 1.75
2294 3643 3.743396 GTCAAAGCTCTGACTTCACGATT 59.257 43.478 13.08 0.00 42.11 3.34
2295 3644 3.243873 TGTCAAAGCTCTGACTTCACGAT 60.244 43.478 20.44 0.00 45.03 3.73
2296 3645 2.100749 TGTCAAAGCTCTGACTTCACGA 59.899 45.455 20.44 0.00 45.03 4.35
2297 3646 2.219674 GTGTCAAAGCTCTGACTTCACG 59.780 50.000 20.44 0.00 45.03 4.35
2298 3647 2.219674 CGTGTCAAAGCTCTGACTTCAC 59.780 50.000 20.44 10.00 45.03 3.18
2299 3648 2.159099 ACGTGTCAAAGCTCTGACTTCA 60.159 45.455 20.44 0.00 45.03 3.02
2300 3649 2.473235 GACGTGTCAAAGCTCTGACTTC 59.527 50.000 20.44 12.44 45.03 3.01
2301 3650 2.474816 GACGTGTCAAAGCTCTGACTT 58.525 47.619 20.44 5.57 45.03 3.01
2302 3651 1.269831 GGACGTGTCAAAGCTCTGACT 60.270 52.381 20.44 0.73 45.03 3.41
2303 3652 1.140816 GGACGTGTCAAAGCTCTGAC 58.859 55.000 13.46 13.46 45.01 3.51
2304 3653 1.040646 AGGACGTGTCAAAGCTCTGA 58.959 50.000 0.00 0.00 0.00 3.27
2305 3654 2.724977 TAGGACGTGTCAAAGCTCTG 57.275 50.000 0.00 0.00 0.00 3.35
2306 3655 2.288886 GGTTAGGACGTGTCAAAGCTCT 60.289 50.000 0.00 0.00 0.00 4.09
2307 3656 2.067013 GGTTAGGACGTGTCAAAGCTC 58.933 52.381 0.00 0.00 0.00 4.09
2308 3657 1.604693 CGGTTAGGACGTGTCAAAGCT 60.605 52.381 0.00 0.00 0.00 3.74
2309 3658 0.788391 CGGTTAGGACGTGTCAAAGC 59.212 55.000 0.00 4.74 0.00 3.51
2310 3659 2.144482 ACGGTTAGGACGTGTCAAAG 57.856 50.000 0.00 0.00 43.78 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.