Multiple sequence alignment - TraesCS1A01G190700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G190700 chr1A 100.000 9846 0 0 1 9846 344489289 344479444 0.000000e+00 18183.0
1 TraesCS1A01G190700 chr1A 90.506 158 9 1 6609 6760 344482594 344482437 4.660000e-48 204.0
2 TraesCS1A01G190700 chr1A 90.506 158 9 1 6696 6853 344482681 344482530 4.660000e-48 204.0
3 TraesCS1A01G190700 chr1A 98.148 108 2 0 9584 9691 272839392 272839285 1.310000e-43 189.0
4 TraesCS1A01G190700 chr1A 83.942 137 22 0 9699 9835 554492193 554492329 2.230000e-26 132.0
5 TraesCS1A01G190700 chr1A 91.209 91 8 0 6583 6673 344482527 344482437 3.730000e-24 124.0
6 TraesCS1A01G190700 chr1A 91.209 91 8 0 6763 6853 344482707 344482617 3.730000e-24 124.0
7 TraesCS1A01G190700 chr1D 97.117 9642 186 37 1 9585 272330567 272320961 0.000000e+00 16181.0
8 TraesCS1A01G190700 chr1D 96.835 158 5 0 9689 9846 272320963 272320806 2.110000e-66 265.0
9 TraesCS1A01G190700 chr1D 90.506 158 9 3 6696 6853 272323943 272323792 4.660000e-48 204.0
10 TraesCS1A01G190700 chr1D 89.873 158 10 1 6609 6760 272323856 272323699 2.170000e-46 198.0
11 TraesCS1A01G190700 chr1D 93.407 91 6 0 6763 6853 272323969 272323879 1.720000e-27 135.0
12 TraesCS1A01G190700 chr1D 91.209 91 8 0 6583 6673 272323789 272323699 3.730000e-24 124.0
13 TraesCS1A01G190700 chr1B 96.760 4877 105 24 4723 9585 371456340 371451503 0.000000e+00 8082.0
14 TraesCS1A01G190700 chr1B 95.436 4185 136 24 1 4170 371461635 371457491 0.000000e+00 6619.0
15 TraesCS1A01G190700 chr1B 95.571 429 10 4 4169 4592 371457328 371456904 0.000000e+00 678.0
16 TraesCS1A01G190700 chr1B 97.468 158 4 0 9689 9846 371451505 371451348 4.530000e-68 270.0
17 TraesCS1A01G190700 chr1B 90.506 158 9 1 6696 6853 371454450 371454299 4.660000e-48 204.0
18 TraesCS1A01G190700 chr1B 89.873 158 10 1 6609 6760 371454363 371454206 2.170000e-46 198.0
19 TraesCS1A01G190700 chr1B 96.703 91 3 0 4635 4725 371456511 371456421 1.710000e-32 152.0
20 TraesCS1A01G190700 chr1B 91.209 91 8 0 6583 6673 371454296 371454206 3.730000e-24 124.0
21 TraesCS1A01G190700 chr1B 91.209 91 8 0 6763 6853 371454476 371454386 3.730000e-24 124.0
22 TraesCS1A01G190700 chr1B 74.227 194 31 15 247 428 371461544 371461358 8.260000e-06 63.9
23 TraesCS1A01G190700 chrUn 95.455 110 5 0 9589 9698 267455466 267455575 1.020000e-39 176.0
24 TraesCS1A01G190700 chrUn 83.942 137 22 0 9699 9835 447483333 447483469 2.230000e-26 132.0
25 TraesCS1A01G190700 chr5B 95.455 110 5 0 9589 9698 392090374 392090483 1.020000e-39 176.0
26 TraesCS1A01G190700 chr5B 95.455 110 5 0 9589 9698 392130411 392130520 1.020000e-39 176.0
27 TraesCS1A01G190700 chr5B 92.920 113 8 0 9583 9695 69548556 69548444 2.200000e-36 165.0
28 TraesCS1A01G190700 chr6D 93.750 112 7 0 9583 9694 68899900 68900011 1.700000e-37 169.0
29 TraesCS1A01G190700 chr5D 93.043 115 8 0 9584 9698 454118325 454118439 1.700000e-37 169.0
30 TraesCS1A01G190700 chr5D 90.991 111 10 0 9583 9693 552030729 552030619 6.160000e-32 150.0
31 TraesCS1A01G190700 chr5D 83.942 137 22 0 9699 9835 503280817 503280681 2.230000e-26 132.0
32 TraesCS1A01G190700 chr5D 83.942 137 22 0 9699 9835 503281362 503281226 2.230000e-26 132.0
33 TraesCS1A01G190700 chr4B 93.750 112 7 0 9584 9695 117056929 117057040 1.700000e-37 169.0
34 TraesCS1A01G190700 chr2D 90.991 111 10 0 9584 9694 586772169 586772059 6.160000e-32 150.0
35 TraesCS1A01G190700 chr7D 83.942 137 22 0 9699 9835 629318155 629318019 2.230000e-26 132.0
36 TraesCS1A01G190700 chr4D 83.942 137 22 0 9699 9835 172082211 172082347 2.230000e-26 132.0
37 TraesCS1A01G190700 chr2A 83.942 137 22 0 9699 9835 335836056 335836192 2.230000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G190700 chr1A 344479444 344489289 9845 True 18183.00 18183 100.0000 1 9846 1 chr1A.!!$R2 9845
1 TraesCS1A01G190700 chr1D 272320806 272330567 9761 True 8223.00 16181 96.9760 1 9846 2 chr1D.!!$R1 9845
2 TraesCS1A01G190700 chr1B 371451348 371461635 10287 True 1651.49 8082 91.8962 1 9846 10 chr1B.!!$R1 9845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 102 0.041663 GTAAAGCGCTTGCGAACACA 60.042 50.000 25.80 0.00 45.69 3.72 F
1090 1100 1.102222 GCTCCTCGAGGTACATCCGT 61.102 60.000 30.17 0.00 41.99 4.69 F
1736 1747 0.950555 TGTGCGTTGTGATGCCTCTC 60.951 55.000 0.00 0.00 36.96 3.20 F
1840 1851 3.711704 GGGGATGACTTAATCTCCTGTGA 59.288 47.826 0.00 0.00 43.07 3.58 F
2856 2878 1.204146 TTGTCCCACCTAGCTCATCC 58.796 55.000 0.00 0.00 0.00 3.51 F
3511 3534 1.177401 GTTTGGGGTGAGCTTGGATC 58.823 55.000 0.00 0.00 0.00 3.36 F
3648 3671 2.501723 TGGACCTTTATCTCACTCCAGC 59.498 50.000 0.00 0.00 0.00 4.85 F
3917 3940 3.142028 TGGGTTCCTCAGAAGGGAAAAAT 59.858 43.478 0.00 0.00 43.39 1.82 F
5632 6264 3.372440 AGGGAAATCTTAAGCCACCTG 57.628 47.619 0.00 0.00 0.00 4.00 F
5717 6349 3.152341 CATTAGGAAGCCTGGCTAATGG 58.848 50.000 23.69 8.83 38.25 3.16 F
5982 6617 4.160252 GGGCCAATGAGAAAGCTTATGAAA 59.840 41.667 4.39 0.00 0.00 2.69 F
7592 8227 4.546829 AAGATTCAACGTAAGGCCTACA 57.453 40.909 5.16 0.00 46.39 2.74 F
8490 9125 0.177141 GCTGGTTGGCGTACTCCATA 59.823 55.000 5.19 0.00 35.77 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1570 0.695803 ACCTCTATCTTGGGGGCCAG 60.696 60.000 4.39 0.00 33.81 4.85 R
2840 2862 0.755698 GTCGGATGAGCTAGGTGGGA 60.756 60.000 0.00 0.00 0.00 4.37 R
2856 2878 2.279120 GCAGGAGCTGATCGGTCG 60.279 66.667 2.89 0.00 41.03 4.79 R
3502 3525 2.665165 ACTGATCTCTCGATCCAAGCT 58.335 47.619 0.00 0.00 44.40 3.74 R
4250 4440 3.911260 TGGGGTACAATGTAAACCAGAGA 59.089 43.478 14.63 0.00 34.83 3.10 R
5232 5864 1.006086 CACACTTCACTTGTCGTGCA 58.994 50.000 0.00 0.00 43.46 4.57 R
5266 5898 1.078214 TCTTTGCATCCAGCCTCCG 60.078 57.895 0.00 0.00 44.83 4.63 R
5717 6349 1.081175 GAAGGAACTGGCGCTTTGC 60.081 57.895 7.64 3.73 40.86 3.68 R
6632 7267 3.594134 AGGAGTCAAATCTTCTGAAGCG 58.406 45.455 12.54 1.76 0.00 4.68 R
6790 7425 5.938125 GCACTTTCTCTTGGAACCATACTTA 59.062 40.000 0.00 0.00 33.13 2.24 R
7619 8254 7.180229 TCAGTTAAATGAGTCACCCAGAGATTA 59.820 37.037 0.56 0.00 0.00 1.75 R
8627 9262 1.407989 GGATCCCTGTTCTGCCTTCAG 60.408 57.143 0.00 0.00 41.67 3.02 R
9528 10192 1.675483 AGCATCAAAACGCAAGACACA 59.325 42.857 0.00 0.00 43.62 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 102 0.041663 GTAAAGCGCTTGCGAACACA 60.042 50.000 25.80 0.00 45.69 3.72
139 142 6.715280 ACAATTGTCTGGTCATAGTCAGATT 58.285 36.000 4.92 0.00 41.36 2.40
230 233 2.130395 GCGGGTAGGTCGTAAATTAGC 58.870 52.381 0.00 0.00 0.00 3.09
238 241 8.309656 GGGTAGGTCGTAAATTAGCATTAGTAT 58.690 37.037 0.00 0.00 0.00 2.12
240 243 9.903682 GTAGGTCGTAAATTAGCATTAGTATCA 57.096 33.333 0.00 0.00 0.00 2.15
242 245 7.871463 AGGTCGTAAATTAGCATTAGTATCACC 59.129 37.037 0.00 0.00 0.00 4.02
299 302 8.375506 ACTGTCTGGTCTGAATCAAAGTAAATA 58.624 33.333 0.00 0.00 0.00 1.40
303 306 9.567776 TCTGGTCTGAATCAAAGTAAATAACAA 57.432 29.630 0.00 0.00 0.00 2.83
385 388 4.141869 GGTTAGGTCGCAAAGTAGGGATAA 60.142 45.833 0.00 0.00 32.84 1.75
389 392 3.808174 GGTCGCAAAGTAGGGATAATCAC 59.192 47.826 0.00 0.00 32.84 3.06
390 393 3.808174 GTCGCAAAGTAGGGATAATCACC 59.192 47.826 0.00 0.00 32.84 4.02
423 426 2.100252 ACGAAGAGTGACGAAAGAACCA 59.900 45.455 0.00 0.00 0.00 3.67
457 460 2.557490 AGTCGGGTCTGAGTCAAGTAAC 59.443 50.000 0.00 0.00 0.00 2.50
558 563 6.084326 TCCCTTTAACTGCACAGAAAAATC 57.916 37.500 4.31 0.00 0.00 2.17
567 572 3.132646 TGCACAGAAAAATCACAGCCTTT 59.867 39.130 0.00 0.00 0.00 3.11
568 573 3.492011 GCACAGAAAAATCACAGCCTTTG 59.508 43.478 0.00 0.00 0.00 2.77
595 600 9.841295 CCTGGTAGGTAAATAAATACTTGCTTA 57.159 33.333 0.00 0.00 0.00 3.09
816 826 4.179599 CCCCTCCCCTCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
820 830 3.036959 TCCCCTCCCCTCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
824 834 2.612251 CTCCCCTCTCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1090 1100 1.102222 GCTCCTCGAGGTACATCCGT 61.102 60.000 30.17 0.00 41.99 4.69
1439 1450 1.752501 CGCACCGATTTAGGCGTCAG 61.753 60.000 0.00 0.00 44.11 3.51
1542 1553 3.390521 TGCAGTACGGGCAGAGGG 61.391 66.667 10.63 0.00 36.11 4.30
1559 1570 2.435059 GCTCTGAACAGCGGGGAC 60.435 66.667 0.00 0.00 0.00 4.46
1618 1629 2.368439 TGTCCCTGAATATGCAGCAAC 58.632 47.619 5.01 6.03 34.56 4.17
1632 1643 9.565090 AATATGCAGCAACATATTCTTCTTCTA 57.435 29.630 14.95 0.00 45.69 2.10
1736 1747 0.950555 TGTGCGTTGTGATGCCTCTC 60.951 55.000 0.00 0.00 36.96 3.20
1836 1847 4.385754 GCTTTGGGGATGACTTAATCTCCT 60.386 45.833 4.79 0.00 46.11 3.69
1840 1851 3.711704 GGGGATGACTTAATCTCCTGTGA 59.288 47.826 0.00 0.00 43.07 3.58
1875 1886 7.324935 TCACAGTACTTATCCGCTTTGAAATA 58.675 34.615 0.00 0.00 0.00 1.40
2840 2862 9.545105 GAAGAAGAGATCTGATGTTCATATTGT 57.455 33.333 0.00 0.00 38.79 2.71
2856 2878 1.204146 TTGTCCCACCTAGCTCATCC 58.796 55.000 0.00 0.00 0.00 3.51
2884 2906 2.037901 CAGCTCCTGCAGATTCTCCTA 58.962 52.381 17.39 0.00 42.74 2.94
3391 3413 3.388024 TCTTTGTGCCACTGTACTCTCTT 59.612 43.478 0.00 0.00 0.00 2.85
3483 3506 9.889128 CAAAAATTCAAATGTAAGATACCCCAT 57.111 29.630 0.00 0.00 0.00 4.00
3502 3525 5.020132 CCCATATTTGTAAGTTTGGGGTGA 58.980 41.667 7.46 0.00 40.12 4.02
3511 3534 1.177401 GTTTGGGGTGAGCTTGGATC 58.823 55.000 0.00 0.00 0.00 3.36
3648 3671 2.501723 TGGACCTTTATCTCACTCCAGC 59.498 50.000 0.00 0.00 0.00 4.85
3694 3717 6.980593 TGGAAAATTGATTGAAGTCGTGAAT 58.019 32.000 0.00 0.00 0.00 2.57
3706 3729 9.965824 ATTGAAGTCGTGAATTTTTACTTTGAT 57.034 25.926 0.00 0.00 30.83 2.57
3917 3940 3.142028 TGGGTTCCTCAGAAGGGAAAAAT 59.858 43.478 0.00 0.00 43.39 1.82
4125 4151 9.722184 AGGTTCAACTCCTAATTAAGACTTAAC 57.278 33.333 9.82 0.00 33.04 2.01
4816 5444 8.462589 AAAACATTTTGCATACAAGGGAAAAT 57.537 26.923 0.00 0.00 43.92 1.82
4871 5499 3.941629 TGGTAGCCTCTTATGAAGGGAT 58.058 45.455 0.00 0.00 0.00 3.85
4872 5500 4.307259 TGGTAGCCTCTTATGAAGGGATT 58.693 43.478 0.00 0.00 0.00 3.01
4873 5501 4.726825 TGGTAGCCTCTTATGAAGGGATTT 59.273 41.667 0.00 0.00 0.00 2.17
4874 5502 5.193728 TGGTAGCCTCTTATGAAGGGATTTT 59.806 40.000 0.00 0.00 0.00 1.82
5232 5864 5.366460 CATTCAGGCTCAACTGATACAGAT 58.634 41.667 5.76 0.00 46.07 2.90
5266 5898 4.086547 GTGCCAGCCCAAATGCCC 62.087 66.667 0.00 0.00 0.00 5.36
5605 6237 8.765219 TCTCTCATCAAAACTCGTTTAAGAAAG 58.235 33.333 0.00 1.71 31.63 2.62
5632 6264 3.372440 AGGGAAATCTTAAGCCACCTG 57.628 47.619 0.00 0.00 0.00 4.00
5717 6349 3.152341 CATTAGGAAGCCTGGCTAATGG 58.848 50.000 23.69 8.83 38.25 3.16
5982 6617 4.160252 GGGCCAATGAGAAAGCTTATGAAA 59.840 41.667 4.39 0.00 0.00 2.69
6071 6706 5.559427 TCTCTCTTGTCTCGAGATGAAAG 57.441 43.478 19.90 20.49 36.95 2.62
6073 6708 5.707764 TCTCTCTTGTCTCGAGATGAAAGAA 59.292 40.000 25.51 18.91 36.95 2.52
6444 7079 6.213600 AGGAGTGGTTTCTTCTAAAGATGCTA 59.786 38.462 0.00 0.00 37.38 3.49
6790 7425 6.541641 GCCATGACTTCTGAATCAGATTTACT 59.458 38.462 14.31 0.00 40.39 2.24
7592 8227 4.546829 AAGATTCAACGTAAGGCCTACA 57.453 40.909 5.16 0.00 46.39 2.74
7989 8624 1.605710 CAAGAAACTGCAGTCACCAGG 59.394 52.381 21.95 4.91 34.65 4.45
8036 8671 6.202954 ACTGCAGTTGTCTGTGAAACTTATAC 59.797 38.462 15.25 0.00 43.05 1.47
8107 8742 6.316140 TGATACAACAGGTGCTGCTATTTTAG 59.684 38.462 0.00 0.00 34.37 1.85
8217 8852 3.047115 ACAGCATGAAGGATGAGGAGAT 58.953 45.455 0.00 0.00 39.69 2.75
8386 9021 3.501950 GGACTTCGTTTTGCATGATTCC 58.498 45.455 0.00 0.00 0.00 3.01
8467 9102 4.499188 CGCTTGTCGAAGATACATTCCCTA 60.499 45.833 0.00 0.00 40.67 3.53
8490 9125 0.177141 GCTGGTTGGCGTACTCCATA 59.823 55.000 5.19 0.00 35.77 2.74
8627 9262 3.991367 ACTACTATGAATAAGGCACCGC 58.009 45.455 0.00 0.00 0.00 5.68
8950 9585 5.316167 TGAACATCTTGGTCTTATTGCACT 58.684 37.500 0.00 0.00 34.53 4.40
8986 9621 2.553602 CTGCAACTGTTGGTTCATGCTA 59.446 45.455 21.01 0.00 35.74 3.49
9032 9667 8.203485 TGCTTTTGTTTGATCTATGGAGTTTTT 58.797 29.630 0.00 0.00 0.00 1.94
9128 9763 8.478775 AGTACCAGAACTTGCATGTATATCTA 57.521 34.615 5.56 0.00 0.00 1.98
9395 10033 6.165577 GCAAACTTTTGATACATGGGACAAT 58.834 36.000 5.87 0.00 40.92 2.71
9585 10249 2.095263 ACATGCCGTGCTCAAAATGTAC 60.095 45.455 0.00 0.00 0.00 2.90
9586 10250 1.890876 TGCCGTGCTCAAAATGTACT 58.109 45.000 0.00 0.00 0.00 2.73
9587 10251 1.804151 TGCCGTGCTCAAAATGTACTC 59.196 47.619 0.00 0.00 0.00 2.59
9588 10252 1.130561 GCCGTGCTCAAAATGTACTCC 59.869 52.381 0.00 0.00 0.00 3.85
9589 10253 1.737793 CCGTGCTCAAAATGTACTCCC 59.262 52.381 0.00 0.00 0.00 4.30
9590 10254 2.615493 CCGTGCTCAAAATGTACTCCCT 60.615 50.000 0.00 0.00 0.00 4.20
9591 10255 2.673368 CGTGCTCAAAATGTACTCCCTC 59.327 50.000 0.00 0.00 0.00 4.30
9592 10256 3.617531 CGTGCTCAAAATGTACTCCCTCT 60.618 47.826 0.00 0.00 0.00 3.69
9593 10257 3.686726 GTGCTCAAAATGTACTCCCTCTG 59.313 47.826 0.00 0.00 0.00 3.35
9594 10258 3.327757 TGCTCAAAATGTACTCCCTCTGT 59.672 43.478 0.00 0.00 0.00 3.41
9595 10259 4.202461 TGCTCAAAATGTACTCCCTCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
9596 10260 4.393371 GCTCAAAATGTACTCCCTCTGTTC 59.607 45.833 0.00 0.00 0.00 3.18
9597 10261 5.551233 CTCAAAATGTACTCCCTCTGTTCA 58.449 41.667 0.00 0.00 0.00 3.18
9598 10262 6.126863 TCAAAATGTACTCCCTCTGTTCAT 57.873 37.500 0.00 0.00 0.00 2.57
9599 10263 6.542821 TCAAAATGTACTCCCTCTGTTCATT 58.457 36.000 0.00 0.00 37.13 2.57
9600 10264 7.004086 TCAAAATGTACTCCCTCTGTTCATTT 58.996 34.615 0.00 0.00 42.71 2.32
9601 10265 7.505585 TCAAAATGTACTCCCTCTGTTCATTTT 59.494 33.333 14.05 14.05 46.28 1.82
9602 10266 7.839680 AAATGTACTCCCTCTGTTCATTTTT 57.160 32.000 0.00 0.00 40.14 1.94
9603 10267 6.824305 ATGTACTCCCTCTGTTCATTTTTG 57.176 37.500 0.00 0.00 0.00 2.44
9604 10268 5.690865 TGTACTCCCTCTGTTCATTTTTGT 58.309 37.500 0.00 0.00 0.00 2.83
9605 10269 6.833041 TGTACTCCCTCTGTTCATTTTTGTA 58.167 36.000 0.00 0.00 0.00 2.41
9606 10270 7.284074 TGTACTCCCTCTGTTCATTTTTGTAA 58.716 34.615 0.00 0.00 0.00 2.41
9607 10271 6.884280 ACTCCCTCTGTTCATTTTTGTAAG 57.116 37.500 0.00 0.00 0.00 2.34
9608 10272 6.365520 ACTCCCTCTGTTCATTTTTGTAAGT 58.634 36.000 0.00 0.00 0.00 2.24
9609 10273 6.486993 ACTCCCTCTGTTCATTTTTGTAAGTC 59.513 38.462 0.00 0.00 0.00 3.01
9610 10274 6.361433 TCCCTCTGTTCATTTTTGTAAGTCA 58.639 36.000 0.00 0.00 0.00 3.41
9611 10275 7.004086 TCCCTCTGTTCATTTTTGTAAGTCAT 58.996 34.615 0.00 0.00 0.00 3.06
9612 10276 7.505585 TCCCTCTGTTCATTTTTGTAAGTCATT 59.494 33.333 0.00 0.00 0.00 2.57
9613 10277 8.143835 CCCTCTGTTCATTTTTGTAAGTCATTT 58.856 33.333 0.00 0.00 0.00 2.32
9614 10278 9.533253 CCTCTGTTCATTTTTGTAAGTCATTTT 57.467 29.630 0.00 0.00 0.00 1.82
9621 10285 9.677567 TCATTTTTGTAAGTCATTTTAGACAGC 57.322 29.630 0.00 0.00 40.98 4.40
9622 10286 9.683069 CATTTTTGTAAGTCATTTTAGACAGCT 57.317 29.630 0.00 0.00 40.98 4.24
9623 10287 9.683069 ATTTTTGTAAGTCATTTTAGACAGCTG 57.317 29.630 13.48 13.48 40.98 4.24
9624 10288 8.445275 TTTTGTAAGTCATTTTAGACAGCTGA 57.555 30.769 23.35 0.00 40.98 4.26
9625 10289 8.445275 TTTGTAAGTCATTTTAGACAGCTGAA 57.555 30.769 23.35 3.60 40.98 3.02
9626 10290 8.445275 TTGTAAGTCATTTTAGACAGCTGAAA 57.555 30.769 23.35 10.88 40.98 2.69
9627 10291 8.621532 TGTAAGTCATTTTAGACAGCTGAAAT 57.378 30.769 23.35 12.84 39.92 2.17
9628 10292 9.066892 TGTAAGTCATTTTAGACAGCTGAAATT 57.933 29.630 23.35 4.40 38.00 1.82
9629 10293 9.334693 GTAAGTCATTTTAGACAGCTGAAATTG 57.665 33.333 23.35 15.93 38.00 2.32
9630 10294 7.750229 AGTCATTTTAGACAGCTGAAATTGA 57.250 32.000 23.35 17.78 38.00 2.57
9631 10295 7.814642 AGTCATTTTAGACAGCTGAAATTGAG 58.185 34.615 23.35 4.63 38.00 3.02
9632 10296 6.525976 GTCATTTTAGACAGCTGAAATTGAGC 59.474 38.462 23.35 12.15 38.00 4.26
9641 10305 5.382618 AGCTGAAATTGAGCTGTTTTAGG 57.617 39.130 6.08 0.00 45.28 2.69
9642 10306 4.829492 AGCTGAAATTGAGCTGTTTTAGGT 59.171 37.500 6.08 0.00 45.28 3.08
9643 10307 4.919754 GCTGAAATTGAGCTGTTTTAGGTG 59.080 41.667 0.00 0.00 37.23 4.00
9644 10308 4.870363 TGAAATTGAGCTGTTTTAGGTGC 58.130 39.130 0.00 0.00 37.23 5.01
9645 10309 4.584325 TGAAATTGAGCTGTTTTAGGTGCT 59.416 37.500 0.00 0.00 37.23 4.40
9646 10310 4.510038 AATTGAGCTGTTTTAGGTGCTG 57.490 40.909 0.00 0.00 37.23 4.41
9647 10311 2.638480 TGAGCTGTTTTAGGTGCTGT 57.362 45.000 0.00 0.00 37.23 4.40
9648 10312 2.494059 TGAGCTGTTTTAGGTGCTGTC 58.506 47.619 0.00 0.00 37.23 3.51
9649 10313 2.104792 TGAGCTGTTTTAGGTGCTGTCT 59.895 45.455 0.00 0.00 37.23 3.41
9650 10314 3.142174 GAGCTGTTTTAGGTGCTGTCTT 58.858 45.455 0.00 0.00 37.23 3.01
9651 10315 4.202315 TGAGCTGTTTTAGGTGCTGTCTTA 60.202 41.667 0.00 0.00 37.23 2.10
9652 10316 4.714632 AGCTGTTTTAGGTGCTGTCTTAA 58.285 39.130 0.00 0.00 35.38 1.85
9653 10317 5.130350 AGCTGTTTTAGGTGCTGTCTTAAA 58.870 37.500 0.00 0.00 35.38 1.52
9654 10318 5.770162 AGCTGTTTTAGGTGCTGTCTTAAAT 59.230 36.000 0.00 0.00 35.38 1.40
9655 10319 5.858581 GCTGTTTTAGGTGCTGTCTTAAATG 59.141 40.000 0.00 0.00 0.00 2.32
9656 10320 5.768317 TGTTTTAGGTGCTGTCTTAAATGC 58.232 37.500 0.00 0.00 0.00 3.56
9657 10321 5.161358 GTTTTAGGTGCTGTCTTAAATGCC 58.839 41.667 0.00 0.00 0.00 4.40
9658 10322 2.887151 AGGTGCTGTCTTAAATGCCT 57.113 45.000 0.00 0.00 0.00 4.75
9659 10323 5.429681 TTAGGTGCTGTCTTAAATGCCTA 57.570 39.130 0.00 0.00 0.00 3.93
9660 10324 4.301072 AGGTGCTGTCTTAAATGCCTAA 57.699 40.909 0.00 0.00 0.00 2.69
9661 10325 4.662278 AGGTGCTGTCTTAAATGCCTAAA 58.338 39.130 0.00 0.00 0.00 1.85
9662 10326 5.076873 AGGTGCTGTCTTAAATGCCTAAAA 58.923 37.500 0.00 0.00 0.00 1.52
9663 10327 5.048013 AGGTGCTGTCTTAAATGCCTAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
9664 10328 4.851558 GTGCTGTCTTAAATGCCTAAAACG 59.148 41.667 0.00 0.00 0.00 3.60
9665 10329 4.517453 TGCTGTCTTAAATGCCTAAAACGT 59.483 37.500 0.00 0.00 0.00 3.99
9666 10330 5.086727 GCTGTCTTAAATGCCTAAAACGTC 58.913 41.667 0.00 0.00 0.00 4.34
9667 10331 5.106673 GCTGTCTTAAATGCCTAAAACGTCT 60.107 40.000 0.00 0.00 0.00 4.18
9668 10332 6.567891 GCTGTCTTAAATGCCTAAAACGTCTT 60.568 38.462 0.00 0.00 0.00 3.01
9669 10333 7.360607 GCTGTCTTAAATGCCTAAAACGTCTTA 60.361 37.037 0.00 0.00 0.00 2.10
9670 10334 8.556213 TGTCTTAAATGCCTAAAACGTCTTAT 57.444 30.769 0.00 0.00 0.00 1.73
9671 10335 9.656040 TGTCTTAAATGCCTAAAACGTCTTATA 57.344 29.630 0.00 0.00 0.00 0.98
9677 10341 9.620660 AAATGCCTAAAACGTCTTATAAAAGTG 57.379 29.630 0.00 0.00 34.13 3.16
9678 10342 7.966246 TGCCTAAAACGTCTTATAAAAGTGA 57.034 32.000 0.00 0.00 34.13 3.41
9679 10343 8.380743 TGCCTAAAACGTCTTATAAAAGTGAA 57.619 30.769 0.00 0.00 34.13 3.18
9680 10344 8.284693 TGCCTAAAACGTCTTATAAAAGTGAAC 58.715 33.333 0.00 0.00 34.13 3.18
9681 10345 7.476492 GCCTAAAACGTCTTATAAAAGTGAACG 59.524 37.037 0.00 0.00 36.83 3.95
9682 10346 7.953710 CCTAAAACGTCTTATAAAAGTGAACGG 59.046 37.037 0.00 0.00 35.75 4.44
9683 10347 7.481275 AAAACGTCTTATAAAAGTGAACGGA 57.519 32.000 0.00 0.00 35.75 4.69
9684 10348 6.701432 AACGTCTTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 35.75 4.63
9685 10349 5.166398 ACGTCTTATAAAAGTGAACGGAGG 58.834 41.667 0.00 0.00 35.75 4.30
9686 10350 4.565564 CGTCTTATAAAAGTGAACGGAGGG 59.434 45.833 0.00 0.00 34.13 4.30
9687 10351 5.622914 CGTCTTATAAAAGTGAACGGAGGGA 60.623 44.000 0.00 0.00 34.13 4.20
9688 10352 5.811100 GTCTTATAAAAGTGAACGGAGGGAG 59.189 44.000 0.00 0.00 34.13 4.30
9689 10353 5.482878 TCTTATAAAAGTGAACGGAGGGAGT 59.517 40.000 0.00 0.00 34.13 3.85
9690 10354 6.664816 TCTTATAAAAGTGAACGGAGGGAGTA 59.335 38.462 0.00 0.00 34.13 2.59
9795 10459 1.895131 ACAATGGATGGCTTGGTGTTC 59.105 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 9.929180 CCTCTACGAGATTTATCAAATAATCCA 57.071 33.333 0.00 0.00 0.00 3.41
57 60 2.134789 TTCTACGACCTACCCACCTC 57.865 55.000 0.00 0.00 0.00 3.85
99 102 4.398044 ACAATTGTTCTTTCGTCACACCTT 59.602 37.500 4.92 0.00 0.00 3.50
190 193 7.438564 ACCCGCTTTTACAAAATCTACAAAAT 58.561 30.769 0.00 0.00 0.00 1.82
198 201 4.436451 CGACCTACCCGCTTTTACAAAATC 60.436 45.833 0.00 0.00 0.00 2.17
230 233 3.050619 GTTCGCGAGGGTGATACTAATG 58.949 50.000 9.59 0.00 31.66 1.90
238 241 2.742710 CTTCGTGTTCGCGAGGGTGA 62.743 60.000 9.59 3.87 42.10 4.02
240 243 2.049433 CTTCGTGTTCGCGAGGGT 60.049 61.111 9.59 0.00 42.10 4.34
242 245 1.660575 ACACTTCGTGTTCGCGAGG 60.661 57.895 9.59 14.34 45.08 4.63
345 348 9.550811 CGACCTAACCACTTTTACAATATTTTC 57.449 33.333 0.00 0.00 0.00 2.29
350 353 5.549347 TGCGACCTAACCACTTTTACAATA 58.451 37.500 0.00 0.00 0.00 1.90
423 426 0.248289 CCCGACTACAACCCGACATT 59.752 55.000 0.00 0.00 0.00 2.71
457 460 8.237949 CCATTACAGACTGGATACTTATCTACG 58.762 40.741 7.51 0.00 34.24 3.51
567 572 6.544564 GCAAGTATTTATTTACCTACCAGGCA 59.455 38.462 0.00 0.00 39.63 4.75
568 573 6.771267 AGCAAGTATTTATTTACCTACCAGGC 59.229 38.462 0.00 0.00 39.63 4.85
816 826 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
820 830 1.152139 GATGAGGGAGGGAGGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
824 834 3.237741 GCCGATGAGGGAGGGAGG 61.238 72.222 0.00 0.00 41.48 4.30
988 998 3.569210 CCTCATATGCCCGGGCCA 61.569 66.667 41.75 29.81 41.09 5.36
1090 1100 4.430765 GAGAACGGAAGCGGCGGA 62.431 66.667 9.78 0.00 0.00 5.54
1392 1402 2.070305 TATGACGAACCATACGGGGA 57.930 50.000 0.00 0.00 42.91 4.81
1439 1450 4.433022 CGCAACTCACGAAATCTGTTAGAC 60.433 45.833 0.00 0.00 0.00 2.59
1542 1553 2.435059 GTCCCCGCTGTTCAGAGC 60.435 66.667 3.84 0.00 35.46 4.09
1559 1570 0.695803 ACCTCTATCTTGGGGGCCAG 60.696 60.000 4.39 0.00 33.81 4.85
1618 1629 9.277783 ACGAAATTCCCATAGAAGAAGAATATG 57.722 33.333 0.00 0.00 38.07 1.78
1632 1643 2.620242 GCATTTGCACGAAATTCCCAT 58.380 42.857 0.00 0.00 41.59 4.00
1736 1747 2.541346 CACACCAGCTAATCTACATGCG 59.459 50.000 0.00 0.00 0.00 4.73
1840 1851 5.710567 GGATAAGTACTGTGAAGCCCTTTTT 59.289 40.000 0.00 0.00 0.00 1.94
1875 1886 5.594317 GGCCATTGGAGTGTAGTAATGAAAT 59.406 40.000 6.95 0.00 33.50 2.17
1981 1993 4.941263 GGACTGTTTGGCATACATTGTCTA 59.059 41.667 21.04 0.00 0.00 2.59
2478 2490 6.433716 TGGCACTAAGTTCATCATCATTTTCA 59.566 34.615 0.00 0.00 0.00 2.69
2840 2862 0.755698 GTCGGATGAGCTAGGTGGGA 60.756 60.000 0.00 0.00 0.00 4.37
2856 2878 2.279120 GCAGGAGCTGATCGGTCG 60.279 66.667 2.89 0.00 41.03 4.79
2884 2906 7.446013 TCGGAGTAACTTTTTGGTCATAAATGT 59.554 33.333 0.00 0.00 0.00 2.71
2993 3015 2.856222 CTTCCTCAGAAGGTTGTTGCT 58.144 47.619 0.00 0.00 44.97 3.91
3391 3413 7.286087 ACATGATTATAGGAGCTGCATTTTGAA 59.714 33.333 8.35 0.00 0.00 2.69
3483 3506 4.993028 AGCTCACCCCAAACTTACAAATA 58.007 39.130 0.00 0.00 0.00 1.40
3502 3525 2.665165 ACTGATCTCTCGATCCAAGCT 58.335 47.619 0.00 0.00 44.40 3.74
3511 3534 6.288426 TCGTCAATACTTACTGATCTCTCG 57.712 41.667 0.00 0.00 0.00 4.04
3648 3671 5.407387 CCAGATGAAACAAAGAAGCAAATGG 59.593 40.000 0.00 0.00 0.00 3.16
3694 3717 8.994429 TTTGACTTCAAGCATCAAAGTAAAAA 57.006 26.923 0.16 0.00 37.41 1.94
3706 3729 6.767902 ACAGAAGACTATTTTGACTTCAAGCA 59.232 34.615 0.00 0.00 39.76 3.91
3773 3796 8.479280 GCCATGCATAACTAAAAATGATTAACG 58.521 33.333 0.00 0.00 0.00 3.18
3917 3940 9.838975 CATTGAGTGTGTTATTATAAGCACAAA 57.161 29.630 16.63 11.03 42.45 2.83
4071 4097 6.437928 TGCAAATGGATATGCGATAGAAAAC 58.562 36.000 0.00 0.00 45.47 2.43
4125 4151 9.577110 AAATATCATGGCAATATTTATGAAGCG 57.423 29.630 13.06 0.00 37.47 4.68
4247 4437 5.514310 GGGGTACAATGTAAACCAGAGAAGT 60.514 44.000 14.63 0.00 34.83 3.01
4248 4438 4.941873 GGGGTACAATGTAAACCAGAGAAG 59.058 45.833 14.63 0.00 34.83 2.85
4249 4439 4.351407 TGGGGTACAATGTAAACCAGAGAA 59.649 41.667 14.63 0.00 34.83 2.87
4250 4440 3.911260 TGGGGTACAATGTAAACCAGAGA 59.089 43.478 14.63 0.00 34.83 3.10
4406 4596 5.589855 TGAGAAAGACTTCACTTGCAAATGA 59.410 36.000 6.47 6.47 33.64 2.57
5232 5864 1.006086 CACACTTCACTTGTCGTGCA 58.994 50.000 0.00 0.00 43.46 4.57
5266 5898 1.078214 TCTTTGCATCCAGCCTCCG 60.078 57.895 0.00 0.00 44.83 4.63
5605 6237 3.368427 GGCTTAAGATTTCCCTTGTTGGC 60.368 47.826 6.67 0.00 0.00 4.52
5632 6264 3.209410 CACCCTTCACTGGAGCATTATC 58.791 50.000 0.00 0.00 0.00 1.75
5717 6349 1.081175 GAAGGAACTGGCGCTTTGC 60.081 57.895 7.64 3.73 40.86 3.68
5982 6617 1.134995 TCGCGCTTGAATGACTCTGAT 60.135 47.619 5.56 0.00 0.00 2.90
6071 6706 3.896648 TCGGCTTCAACATTCTTGTTC 57.103 42.857 0.00 0.00 44.24 3.18
6073 6708 3.411446 TCATCGGCTTCAACATTCTTGT 58.589 40.909 0.00 0.00 37.82 3.16
6089 6724 6.431278 TCTAAGAAACTCTTATCGCTCATCG 58.569 40.000 0.00 0.00 38.20 3.84
6282 6917 5.779241 AACTGAACCCTGATATTTCCTCA 57.221 39.130 0.00 0.00 0.00 3.86
6374 7009 1.535462 CCCCGCTTTTCACTGTTACAG 59.465 52.381 11.21 11.21 37.52 2.74
6376 7011 0.240145 GCCCCGCTTTTCACTGTTAC 59.760 55.000 0.00 0.00 0.00 2.50
6444 7079 8.037758 CAGTGGATCAGAAGTCTTTACAGTATT 58.962 37.037 0.00 0.00 0.00 1.89
6632 7267 3.594134 AGGAGTCAAATCTTCTGAAGCG 58.406 45.455 12.54 1.76 0.00 4.68
6790 7425 5.938125 GCACTTTCTCTTGGAACCATACTTA 59.062 40.000 0.00 0.00 33.13 2.24
7619 8254 7.180229 TCAGTTAAATGAGTCACCCAGAGATTA 59.820 37.037 0.56 0.00 0.00 1.75
7989 8624 4.236527 ACCACTTCCCAATACAATCTCC 57.763 45.455 0.00 0.00 0.00 3.71
8036 8671 2.450320 CCTCCTGAGCCCATGGGAG 61.450 68.421 36.00 22.20 43.42 4.30
8107 8742 8.777413 TGCAATCAGTAGCTCATGTTATTATTC 58.223 33.333 0.00 0.00 0.00 1.75
8217 8852 5.745312 TGGAGCTTCATTCAGACTAAAGA 57.255 39.130 0.00 0.00 0.00 2.52
8386 9021 2.143122 TGCCTTTTGTAGCTTGACTCG 58.857 47.619 0.00 0.00 0.00 4.18
8627 9262 1.407989 GGATCCCTGTTCTGCCTTCAG 60.408 57.143 0.00 0.00 41.67 3.02
8986 9621 3.369892 GCAGTCAATACCATCACCAGACT 60.370 47.826 0.00 0.00 35.44 3.24
9032 9667 5.935206 TGAAAGTATTCACATTCCGCAACTA 59.065 36.000 0.00 0.00 40.59 2.24
9128 9763 4.818546 GCAGTACCTATTTGCTGTCATGAT 59.181 41.667 0.00 0.00 35.05 2.45
9395 10033 6.942976 AGTCCCTTATTTTATTGACGAGTGA 58.057 36.000 0.00 0.00 0.00 3.41
9528 10192 1.675483 AGCATCAAAACGCAAGACACA 59.325 42.857 0.00 0.00 43.62 3.72
9585 10249 6.486657 TGACTTACAAAAATGAACAGAGGGAG 59.513 38.462 0.00 0.00 0.00 4.30
9586 10250 6.361433 TGACTTACAAAAATGAACAGAGGGA 58.639 36.000 0.00 0.00 0.00 4.20
9587 10251 6.633500 TGACTTACAAAAATGAACAGAGGG 57.367 37.500 0.00 0.00 0.00 4.30
9588 10252 9.533253 AAAATGACTTACAAAAATGAACAGAGG 57.467 29.630 0.00 0.00 0.00 3.69
9595 10259 9.677567 GCTGTCTAAAATGACTTACAAAAATGA 57.322 29.630 0.00 0.00 37.79 2.57
9596 10260 9.683069 AGCTGTCTAAAATGACTTACAAAAATG 57.317 29.630 0.00 0.00 37.79 2.32
9597 10261 9.683069 CAGCTGTCTAAAATGACTTACAAAAAT 57.317 29.630 5.25 0.00 37.79 1.82
9598 10262 8.898761 TCAGCTGTCTAAAATGACTTACAAAAA 58.101 29.630 14.67 0.00 37.79 1.94
9599 10263 8.445275 TCAGCTGTCTAAAATGACTTACAAAA 57.555 30.769 14.67 0.00 37.79 2.44
9600 10264 8.445275 TTCAGCTGTCTAAAATGACTTACAAA 57.555 30.769 14.67 0.00 37.79 2.83
9601 10265 8.445275 TTTCAGCTGTCTAAAATGACTTACAA 57.555 30.769 14.67 0.00 37.79 2.41
9602 10266 8.621532 ATTTCAGCTGTCTAAAATGACTTACA 57.378 30.769 14.67 0.00 37.79 2.41
9603 10267 9.334693 CAATTTCAGCTGTCTAAAATGACTTAC 57.665 33.333 14.67 0.00 37.79 2.34
9604 10268 9.283768 TCAATTTCAGCTGTCTAAAATGACTTA 57.716 29.630 14.67 0.00 37.79 2.24
9605 10269 8.169977 TCAATTTCAGCTGTCTAAAATGACTT 57.830 30.769 14.67 0.00 37.79 3.01
9606 10270 7.574592 GCTCAATTTCAGCTGTCTAAAATGACT 60.575 37.037 14.67 0.00 37.79 3.41
9607 10271 6.525976 GCTCAATTTCAGCTGTCTAAAATGAC 59.474 38.462 14.67 7.24 37.47 3.06
9608 10272 6.432162 AGCTCAATTTCAGCTGTCTAAAATGA 59.568 34.615 14.67 13.92 45.85 2.57
9609 10273 6.618811 AGCTCAATTTCAGCTGTCTAAAATG 58.381 36.000 14.67 10.43 45.85 2.32
9610 10274 6.830873 AGCTCAATTTCAGCTGTCTAAAAT 57.169 33.333 14.67 9.34 45.85 1.82
9620 10284 4.919754 CACCTAAAACAGCTCAATTTCAGC 59.080 41.667 0.00 0.00 37.12 4.26
9621 10285 4.919754 GCACCTAAAACAGCTCAATTTCAG 59.080 41.667 0.00 0.00 0.00 3.02
9622 10286 4.584325 AGCACCTAAAACAGCTCAATTTCA 59.416 37.500 0.00 0.00 30.05 2.69
9623 10287 4.919754 CAGCACCTAAAACAGCTCAATTTC 59.080 41.667 0.00 0.00 34.61 2.17
9624 10288 4.342092 ACAGCACCTAAAACAGCTCAATTT 59.658 37.500 0.00 0.00 34.61 1.82
9625 10289 3.891366 ACAGCACCTAAAACAGCTCAATT 59.109 39.130 0.00 0.00 34.61 2.32
9626 10290 3.490348 ACAGCACCTAAAACAGCTCAAT 58.510 40.909 0.00 0.00 34.61 2.57
9627 10291 2.878406 GACAGCACCTAAAACAGCTCAA 59.122 45.455 0.00 0.00 34.61 3.02
9628 10292 2.104792 AGACAGCACCTAAAACAGCTCA 59.895 45.455 0.00 0.00 34.61 4.26
9629 10293 2.772287 AGACAGCACCTAAAACAGCTC 58.228 47.619 0.00 0.00 34.61 4.09
9630 10294 2.938956 AGACAGCACCTAAAACAGCT 57.061 45.000 0.00 0.00 37.95 4.24
9631 10295 5.432885 TTTAAGACAGCACCTAAAACAGC 57.567 39.130 0.00 0.00 0.00 4.40
9632 10296 5.858581 GCATTTAAGACAGCACCTAAAACAG 59.141 40.000 0.00 0.00 0.00 3.16
9633 10297 5.278758 GGCATTTAAGACAGCACCTAAAACA 60.279 40.000 0.00 0.00 0.00 2.83
9634 10298 5.048013 AGGCATTTAAGACAGCACCTAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
9635 10299 5.076873 AGGCATTTAAGACAGCACCTAAAA 58.923 37.500 0.00 0.00 0.00 1.52
9636 10300 4.662278 AGGCATTTAAGACAGCACCTAAA 58.338 39.130 0.00 0.00 0.00 1.85
9637 10301 4.301072 AGGCATTTAAGACAGCACCTAA 57.699 40.909 0.00 0.00 0.00 2.69
9638 10302 5.429681 TTAGGCATTTAAGACAGCACCTA 57.570 39.130 0.00 0.00 0.00 3.08
9639 10303 2.887151 AGGCATTTAAGACAGCACCT 57.113 45.000 0.00 0.00 0.00 4.00
9640 10304 5.161358 GTTTTAGGCATTTAAGACAGCACC 58.839 41.667 0.00 0.00 0.00 5.01
9641 10305 4.851558 CGTTTTAGGCATTTAAGACAGCAC 59.148 41.667 0.00 0.00 0.00 4.40
9642 10306 4.517453 ACGTTTTAGGCATTTAAGACAGCA 59.483 37.500 0.00 0.00 0.00 4.41
9643 10307 5.043189 ACGTTTTAGGCATTTAAGACAGC 57.957 39.130 0.00 0.00 0.00 4.40
9644 10308 6.481954 AGACGTTTTAGGCATTTAAGACAG 57.518 37.500 0.00 0.00 0.00 3.51
9645 10309 6.870971 AAGACGTTTTAGGCATTTAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
9651 10315 9.620660 CACTTTTATAAGACGTTTTAGGCATTT 57.379 29.630 4.75 0.00 35.30 2.32
9652 10316 9.005777 TCACTTTTATAAGACGTTTTAGGCATT 57.994 29.630 4.75 0.00 35.30 3.56
9653 10317 8.556213 TCACTTTTATAAGACGTTTTAGGCAT 57.444 30.769 4.75 0.00 35.30 4.40
9654 10318 7.966246 TCACTTTTATAAGACGTTTTAGGCA 57.034 32.000 4.75 0.00 35.30 4.75
9655 10319 7.476492 CGTTCACTTTTATAAGACGTTTTAGGC 59.524 37.037 4.75 0.00 35.30 3.93
9656 10320 7.953710 CCGTTCACTTTTATAAGACGTTTTAGG 59.046 37.037 4.75 0.00 35.30 2.69
9657 10321 8.702438 TCCGTTCACTTTTATAAGACGTTTTAG 58.298 33.333 4.75 0.00 35.30 1.85
9658 10322 8.586570 TCCGTTCACTTTTATAAGACGTTTTA 57.413 30.769 0.52 0.52 35.30 1.52
9659 10323 7.307573 CCTCCGTTCACTTTTATAAGACGTTTT 60.308 37.037 0.00 0.00 35.30 2.43
9660 10324 6.146673 CCTCCGTTCACTTTTATAAGACGTTT 59.853 38.462 0.00 0.00 35.30 3.60
9661 10325 5.636543 CCTCCGTTCACTTTTATAAGACGTT 59.363 40.000 0.00 0.00 35.30 3.99
9662 10326 5.166398 CCTCCGTTCACTTTTATAAGACGT 58.834 41.667 0.00 0.00 35.30 4.34
9663 10327 4.565564 CCCTCCGTTCACTTTTATAAGACG 59.434 45.833 0.00 0.15 35.30 4.18
9664 10328 5.727434 TCCCTCCGTTCACTTTTATAAGAC 58.273 41.667 0.00 0.00 35.30 3.01
9665 10329 5.482878 ACTCCCTCCGTTCACTTTTATAAGA 59.517 40.000 0.00 0.00 35.30 2.10
9666 10330 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
9667 10331 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
9668 10332 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
9669 10333 4.776308 ACTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
9670 10334 4.154942 ACTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
9671 10335 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
9672 10336 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
9673 10337 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
9674 10338 3.446442 TTACTACTCCCTCCGTTCACT 57.554 47.619 0.00 0.00 0.00 3.41
9675 10339 3.509184 AGTTTACTACTCCCTCCGTTCAC 59.491 47.826 0.00 0.00 28.23 3.18
9676 10340 3.771216 AGTTTACTACTCCCTCCGTTCA 58.229 45.455 0.00 0.00 28.23 3.18
9677 10341 5.904362 TTAGTTTACTACTCCCTCCGTTC 57.096 43.478 0.00 0.00 38.33 3.95
9678 10342 6.864151 AATTAGTTTACTACTCCCTCCGTT 57.136 37.500 0.00 0.00 38.33 4.44
9679 10343 6.864151 AAATTAGTTTACTACTCCCTCCGT 57.136 37.500 0.00 0.00 38.33 4.69
9680 10344 8.689972 TCTAAAATTAGTTTACTACTCCCTCCG 58.310 37.037 0.46 0.00 38.33 4.63
9689 10353 9.918630 ACGCAACTCTCTAAAATTAGTTTACTA 57.081 29.630 0.46 0.00 29.93 1.82
9690 10354 8.828688 ACGCAACTCTCTAAAATTAGTTTACT 57.171 30.769 0.46 0.00 29.93 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.