Multiple sequence alignment - TraesCS1A01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G190500 chr1A 100.000 6315 0 0 1 6315 344289280 344295594 0.000000e+00 11662
1 TraesCS1A01G190500 chr1A 94.097 288 14 3 1758 2043 7548954 7548668 9.720000e-118 435
2 TraesCS1A01G190500 chr1A 96.212 264 10 0 1758 2021 571583370 571583107 3.500000e-117 433
3 TraesCS1A01G190500 chr1D 93.243 3922 152 39 2018 5892 272188651 272192506 0.000000e+00 5670
4 TraesCS1A01G190500 chr1D 92.597 1783 87 14 1 1764 272186900 272188656 0.000000e+00 2519
5 TraesCS1A01G190500 chr1D 95.067 223 7 3 5888 6110 272209157 272209375 1.300000e-91 348
6 TraesCS1A01G190500 chr1B 94.358 1737 45 15 3712 5435 371141187 371142883 0.000000e+00 2615
7 TraesCS1A01G190500 chr1B 91.401 1791 92 25 1 1764 371137790 371139545 0.000000e+00 2398
8 TraesCS1A01G190500 chr1B 93.521 710 33 4 5423 6125 371144548 371145251 0.000000e+00 1044
9 TraesCS1A01G190500 chr1B 84.462 650 36 14 2213 2820 371139655 371140281 1.180000e-161 580
10 TraesCS1A01G190500 chr1B 88.889 378 31 7 3340 3714 371140737 371141106 7.460000e-124 455
11 TraesCS1A01G190500 chr1B 87.383 214 17 5 3080 3285 371140525 371140736 2.940000e-58 237
12 TraesCS1A01G190500 chr1B 94.215 121 4 2 2018 2136 371139540 371139659 1.400000e-41 182
13 TraesCS1A01G190500 chr1B 93.103 87 4 2 6164 6249 371145382 371145467 6.650000e-25 126
14 TraesCS1A01G190500 chr5A 89.676 833 69 10 926 1753 49741165 49740345 0.000000e+00 1046
15 TraesCS1A01G190500 chr5A 88.462 832 83 8 926 1753 49851327 49850505 0.000000e+00 992
16 TraesCS1A01G190500 chr5A 88.556 734 65 14 926 1653 49741898 49741178 0.000000e+00 872
17 TraesCS1A01G190500 chr5A 95.290 276 9 3 1750 2021 347015993 347015718 9.720000e-118 435
18 TraesCS1A01G190500 chr4B 98.893 271 1 2 1754 2022 243158926 243159196 3.420000e-132 483
19 TraesCS1A01G190500 chr7A 99.245 265 2 0 1755 2019 589833483 589833219 4.430000e-131 479
20 TraesCS1A01G190500 chr3A 95.911 269 11 0 1751 2019 726454073 726454341 2.700000e-118 436
21 TraesCS1A01G190500 chr2A 96.578 263 9 0 1759 2021 653300490 653300228 2.700000e-118 436
22 TraesCS1A01G190500 chr2A 93.706 286 14 4 1759 2041 652870774 652871058 5.850000e-115 425
23 TraesCS1A01G190500 chr6A 94.909 275 11 3 1748 2020 602321654 602321927 1.630000e-115 427


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G190500 chr1A 344289280 344295594 6314 False 11662.000 11662 100.0000 1 6315 1 chr1A.!!$F1 6314
1 TraesCS1A01G190500 chr1D 272186900 272192506 5606 False 4094.500 5670 92.9200 1 5892 2 chr1D.!!$F2 5891
2 TraesCS1A01G190500 chr1B 371137790 371145467 7677 False 954.625 2615 90.9165 1 6249 8 chr1B.!!$F1 6248
3 TraesCS1A01G190500 chr5A 49850505 49851327 822 True 992.000 992 88.4620 926 1753 1 chr5A.!!$R1 827
4 TraesCS1A01G190500 chr5A 49740345 49741898 1553 True 959.000 1046 89.1160 926 1753 2 chr5A.!!$R3 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 110 0.035439 AAGGCCGATGTTGATCCGTT 60.035 50.000 0.00 0.00 0.00 4.44 F
377 384 0.108329 ACAACGAGGCGATAACAGGG 60.108 55.000 0.00 0.00 0.00 4.45 F
599 626 0.610174 AAGAGACAATGCGGCTCAGA 59.390 50.000 0.00 0.00 0.00 3.27 F
2067 2865 0.742281 CCATTACGCTGCACTGCTCT 60.742 55.000 1.98 0.00 0.00 4.09 F
2278 3084 4.765813 TTAGTAACTGGAACTATGGGGC 57.234 45.455 0.00 0.00 29.86 5.80 F
3312 4236 0.031857 CCATGTGGCGAGTGCAAAAA 59.968 50.000 0.00 0.00 45.35 1.94 F
3915 4958 0.330604 AACATCCTGCAGGCAGTGAT 59.669 50.000 28.91 17.05 42.15 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2800 0.033306 GAGTACTCCCTCCGGTCCTT 60.033 60.000 12.13 0.00 0.00 3.36 R
2004 2802 1.455402 GGAGTACTCCCTCCGGTCC 60.455 68.421 28.87 3.41 43.94 4.46 R
2278 3084 3.136123 CAACTCGCAGGGGCCATG 61.136 66.667 15.10 15.10 36.38 3.66 R
2926 3843 0.300491 CACACACACAAGAACCGTCG 59.700 55.000 0.00 0.00 0.00 5.12 R
3766 4804 0.487325 TTCAGAGAGGAGTGACCCCA 59.513 55.000 0.00 0.00 40.05 4.96 R
5091 6138 3.424703 CTGACCTGGGACATGAACAAAT 58.575 45.455 0.00 0.00 38.20 2.32 R
5878 8618 2.977772 TTTGTCCCAGCAAACAAAGG 57.022 45.000 0.00 0.00 39.70 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 110 0.035439 AAGGCCGATGTTGATCCGTT 60.035 50.000 0.00 0.00 0.00 4.44
131 138 1.760029 CAGTCTCCTCCTAGGAAAGCC 59.240 57.143 13.77 3.37 45.28 4.35
132 139 0.747852 GTCTCCTCCTAGGAAAGCCG 59.252 60.000 13.77 0.00 45.28 5.52
140 147 0.250513 CTAGGAAAGCCGCAAGTCCT 59.749 55.000 12.57 12.57 41.46 3.85
158 165 2.170607 TCCTTGGACCGATTTGATCTCC 59.829 50.000 0.00 0.00 0.00 3.71
162 169 4.235079 TGGACCGATTTGATCTCCATTT 57.765 40.909 0.00 0.00 0.00 2.32
189 196 4.097361 GCTCCCGTCCAAGACCCC 62.097 72.222 0.00 0.00 0.00 4.95
200 207 1.241165 CAAGACCCCCGTTTTACCAC 58.759 55.000 0.00 0.00 0.00 4.16
278 285 3.279434 GTGTCCAATTATCCAGTGGGTC 58.721 50.000 9.92 0.00 34.93 4.46
375 382 0.999406 CCACAACGAGGCGATAACAG 59.001 55.000 0.00 0.00 0.00 3.16
377 384 0.108329 ACAACGAGGCGATAACAGGG 60.108 55.000 0.00 0.00 0.00 4.45
419 426 1.597854 CGCCTGTCTGTTCTTGGCA 60.598 57.895 0.00 0.00 43.38 4.92
422 429 1.883638 GCCTGTCTGTTCTTGGCATGA 60.884 52.381 0.00 0.00 42.79 3.07
551 569 7.346751 TCCTAGATCATTTTTAATTGGTGGC 57.653 36.000 0.00 0.00 0.00 5.01
554 572 5.733676 AGATCATTTTTAATTGGTGGCACC 58.266 37.500 29.75 29.75 39.22 5.01
558 585 1.693627 TTTAATTGGTGGCACCGTGT 58.306 45.000 30.14 19.54 42.58 4.49
575 602 2.359900 GTGTAAGCCCCAGATCAACTG 58.640 52.381 0.00 0.00 45.36 3.16
599 626 0.610174 AAGAGACAATGCGGCTCAGA 59.390 50.000 0.00 0.00 0.00 3.27
646 674 3.750130 ACTCAGTCAAACACATGATCAGC 59.250 43.478 0.00 0.00 0.00 4.26
647 675 3.742385 TCAGTCAAACACATGATCAGCA 58.258 40.909 0.00 0.00 0.00 4.41
653 681 4.945543 TCAAACACATGATCAGCAGCTATT 59.054 37.500 0.00 0.00 0.00 1.73
814 855 1.422531 ACCTGATGCTCCAGATCCTC 58.577 55.000 7.36 0.00 36.29 3.71
853 894 2.280186 GACAGCTAATCGCCGGGG 60.280 66.667 13.31 13.31 40.39 5.73
887 928 1.820481 GGGCCGCCTACGCATTTTA 60.820 57.895 9.86 0.00 38.22 1.52
936 977 1.834263 ACCAGTTCAGCCCTCTACATC 59.166 52.381 0.00 0.00 0.00 3.06
939 980 2.762887 CAGTTCAGCCCTCTACATCAGA 59.237 50.000 0.00 0.00 0.00 3.27
940 981 2.763448 AGTTCAGCCCTCTACATCAGAC 59.237 50.000 0.00 0.00 0.00 3.51
1433 2216 1.945354 CTTCCGGCGAAGGTAGCAGA 61.945 60.000 9.30 0.00 41.66 4.26
1434 2217 1.537814 TTCCGGCGAAGGTAGCAGAA 61.538 55.000 9.30 0.00 36.08 3.02
1435 2218 1.519455 CCGGCGAAGGTAGCAGAAG 60.519 63.158 9.30 0.00 36.08 2.85
1436 2219 2.167861 CGGCGAAGGTAGCAGAAGC 61.168 63.158 0.00 0.00 42.56 3.86
1547 2342 2.593436 CGCGGAAACAGGGGTGTT 60.593 61.111 0.00 0.00 0.00 3.32
1764 2562 6.659824 TCAGGAAATCTTGGTTTATACTCCC 58.340 40.000 0.00 0.00 0.00 4.30
1765 2563 6.447084 TCAGGAAATCTTGGTTTATACTCCCT 59.553 38.462 0.00 0.00 0.00 4.20
1766 2564 6.768381 CAGGAAATCTTGGTTTATACTCCCTC 59.232 42.308 0.00 0.00 0.00 4.30
1767 2565 6.062749 GGAAATCTTGGTTTATACTCCCTCC 58.937 44.000 0.00 0.00 0.00 4.30
1768 2566 4.957684 ATCTTGGTTTATACTCCCTCCG 57.042 45.455 0.00 0.00 0.00 4.63
1769 2567 3.036091 TCTTGGTTTATACTCCCTCCGG 58.964 50.000 0.00 0.00 0.00 5.14
1770 2568 2.555732 TGGTTTATACTCCCTCCGGT 57.444 50.000 0.00 0.00 0.00 5.28
1771 2569 2.391678 TGGTTTATACTCCCTCCGGTC 58.608 52.381 0.00 0.00 0.00 4.79
1772 2570 1.690893 GGTTTATACTCCCTCCGGTCC 59.309 57.143 0.00 0.00 0.00 4.46
1773 2571 2.675583 GTTTATACTCCCTCCGGTCCT 58.324 52.381 0.00 0.00 0.00 3.85
1774 2572 3.036819 GTTTATACTCCCTCCGGTCCTT 58.963 50.000 0.00 0.00 0.00 3.36
1775 2573 3.409804 TTATACTCCCTCCGGTCCTTT 57.590 47.619 0.00 0.00 0.00 3.11
1776 2574 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
1777 2575 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
1778 2576 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1779 2577 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
1780 2578 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
1781 2579 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
1782 2580 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
1783 2581 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
1784 2582 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
1785 2583 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
1786 2584 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
1787 2585 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
1788 2586 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
1789 2587 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
1790 2588 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
1791 2589 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
1792 2590 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
1793 2591 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
1794 2592 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
1804 2602 8.703743 ACTCTGCATATTAGAATTCTCTGAAGT 58.296 33.333 12.24 7.56 32.70 3.01
1805 2603 9.195411 CTCTGCATATTAGAATTCTCTGAAGTC 57.805 37.037 12.24 0.25 32.70 3.01
1806 2604 8.699130 TCTGCATATTAGAATTCTCTGAAGTCA 58.301 33.333 12.24 3.02 32.70 3.41
1807 2605 9.322773 CTGCATATTAGAATTCTCTGAAGTCAA 57.677 33.333 12.24 0.00 32.70 3.18
1808 2606 9.671279 TGCATATTAGAATTCTCTGAAGTCAAA 57.329 29.630 12.24 0.00 32.70 2.69
1809 2607 9.928236 GCATATTAGAATTCTCTGAAGTCAAAC 57.072 33.333 12.24 0.00 32.70 2.93
1831 2629 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
1832 2630 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
1833 2631 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
1834 2632 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
1837 2635 9.438228 TCACAAAGTTTGACCGTATTTATATGA 57.562 29.630 22.23 7.49 0.00 2.15
1861 2659 5.864418 AAAATATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
1862 2660 6.964807 AAAATATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
1863 2661 6.964807 AAATATCAACATCTGCCATGCTAA 57.035 33.333 0.00 0.00 0.00 3.09
1864 2662 6.964807 AATATCAACATCTGCCATGCTAAA 57.035 33.333 0.00 0.00 0.00 1.85
1865 2663 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
1866 2664 3.689347 TCAACATCTGCCATGCTAAAGT 58.311 40.909 0.00 0.00 0.00 2.66
1867 2665 3.441222 TCAACATCTGCCATGCTAAAGTG 59.559 43.478 0.00 0.00 0.00 3.16
1868 2666 3.354948 ACATCTGCCATGCTAAAGTGA 57.645 42.857 0.00 0.00 0.00 3.41
1869 2667 3.894759 ACATCTGCCATGCTAAAGTGAT 58.105 40.909 0.00 0.00 0.00 3.06
1870 2668 5.039920 ACATCTGCCATGCTAAAGTGATA 57.960 39.130 0.00 0.00 0.00 2.15
1871 2669 4.818546 ACATCTGCCATGCTAAAGTGATAC 59.181 41.667 0.00 0.00 0.00 2.24
1872 2670 3.457234 TCTGCCATGCTAAAGTGATACG 58.543 45.455 0.00 0.00 0.00 3.06
1873 2671 3.132111 TCTGCCATGCTAAAGTGATACGA 59.868 43.478 0.00 0.00 0.00 3.43
1874 2672 4.060900 CTGCCATGCTAAAGTGATACGAT 58.939 43.478 0.00 0.00 0.00 3.73
1875 2673 5.010617 TCTGCCATGCTAAAGTGATACGATA 59.989 40.000 0.00 0.00 0.00 2.92
1876 2674 5.793817 TGCCATGCTAAAGTGATACGATAT 58.206 37.500 0.00 0.00 0.00 1.63
1877 2675 5.639082 TGCCATGCTAAAGTGATACGATATG 59.361 40.000 0.00 0.00 0.00 1.78
1878 2676 5.869344 GCCATGCTAAAGTGATACGATATGA 59.131 40.000 0.00 0.00 0.00 2.15
1879 2677 6.368791 GCCATGCTAAAGTGATACGATATGAA 59.631 38.462 0.00 0.00 0.00 2.57
1880 2678 7.095229 GCCATGCTAAAGTGATACGATATGAAA 60.095 37.037 0.00 0.00 0.00 2.69
1881 2679 8.223769 CCATGCTAAAGTGATACGATATGAAAC 58.776 37.037 0.00 0.00 0.00 2.78
1882 2680 8.982685 CATGCTAAAGTGATACGATATGAAACT 58.017 33.333 0.00 0.00 0.00 2.66
1883 2681 8.942338 TGCTAAAGTGATACGATATGAAACTT 57.058 30.769 0.00 0.00 0.00 2.66
1884 2682 9.378551 TGCTAAAGTGATACGATATGAAACTTT 57.621 29.630 0.00 0.00 39.16 2.66
1895 2693 8.771920 ACGATATGAAACTTTAAGTCATGACA 57.228 30.769 27.02 5.13 34.01 3.58
1896 2694 8.656849 ACGATATGAAACTTTAAGTCATGACAC 58.343 33.333 27.02 2.19 34.01 3.67
1897 2695 8.655970 CGATATGAAACTTTAAGTCATGACACA 58.344 33.333 27.02 11.66 34.01 3.72
1900 2698 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
1901 2699 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
1902 2700 9.725019 TGAAACTTTAAGTCATGACACATCTAT 57.275 29.630 27.02 7.36 0.00 1.98
1905 2703 9.725019 AACTTTAAGTCATGACACATCTATTGA 57.275 29.630 27.02 5.47 0.00 2.57
1906 2704 9.896645 ACTTTAAGTCATGACACATCTATTGAT 57.103 29.630 27.02 0.00 0.00 2.57
1931 2729 9.811995 ATATTGATTTCAGATTGTCAATGTTGG 57.188 29.630 1.88 0.00 40.43 3.77
1932 2730 6.653526 TGATTTCAGATTGTCAATGTTGGT 57.346 33.333 1.88 0.00 0.00 3.67
1933 2731 7.757941 TGATTTCAGATTGTCAATGTTGGTA 57.242 32.000 1.88 0.00 0.00 3.25
1934 2732 7.592938 TGATTTCAGATTGTCAATGTTGGTAC 58.407 34.615 1.88 0.00 0.00 3.34
1935 2733 7.448161 TGATTTCAGATTGTCAATGTTGGTACT 59.552 33.333 1.88 0.00 0.00 2.73
1936 2734 7.581213 TTTCAGATTGTCAATGTTGGTACTT 57.419 32.000 1.88 0.00 0.00 2.24
1937 2735 7.581213 TTCAGATTGTCAATGTTGGTACTTT 57.419 32.000 1.88 0.00 0.00 2.66
1938 2736 7.581213 TCAGATTGTCAATGTTGGTACTTTT 57.419 32.000 1.88 0.00 0.00 2.27
1939 2737 8.006298 TCAGATTGTCAATGTTGGTACTTTTT 57.994 30.769 1.88 0.00 0.00 1.94
1971 2769 6.969669 GTTGGTCAAACTTTACGAAGATTG 57.030 37.500 0.00 0.00 43.26 2.67
1972 2770 6.721321 GTTGGTCAAACTTTACGAAGATTGA 58.279 36.000 7.49 7.49 46.18 2.57
1995 2793 7.234187 GACTTCAGTCAAATGTTATATGCGA 57.766 36.000 1.86 0.00 44.18 5.10
1996 2794 7.609760 ACTTCAGTCAAATGTTATATGCGAA 57.390 32.000 0.00 0.00 0.00 4.70
1997 2795 7.464358 ACTTCAGTCAAATGTTATATGCGAAC 58.536 34.615 0.00 0.00 0.00 3.95
1998 2796 7.334421 ACTTCAGTCAAATGTTATATGCGAACT 59.666 33.333 0.00 0.00 0.00 3.01
1999 2797 8.710835 TTCAGTCAAATGTTATATGCGAACTA 57.289 30.769 0.00 0.00 0.00 2.24
2000 2798 8.710835 TCAGTCAAATGTTATATGCGAACTAA 57.289 30.769 0.00 0.00 0.00 2.24
2001 2799 9.157104 TCAGTCAAATGTTATATGCGAACTAAA 57.843 29.630 0.00 0.00 0.00 1.85
2002 2800 9.767684 CAGTCAAATGTTATATGCGAACTAAAA 57.232 29.630 0.00 0.00 0.00 1.52
2005 2803 9.781834 TCAAATGTTATATGCGAACTAAAAAGG 57.218 29.630 0.00 0.00 0.00 3.11
2006 2804 9.781834 CAAATGTTATATGCGAACTAAAAAGGA 57.218 29.630 0.00 0.00 0.00 3.36
2007 2805 9.783256 AAATGTTATATGCGAACTAAAAAGGAC 57.217 29.630 0.00 0.00 0.00 3.85
2008 2806 7.311364 TGTTATATGCGAACTAAAAAGGACC 57.689 36.000 0.00 0.00 0.00 4.46
2009 2807 6.036300 TGTTATATGCGAACTAAAAAGGACCG 59.964 38.462 0.00 0.00 0.00 4.79
2010 2808 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
2011 2809 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
2012 2810 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
2067 2865 0.742281 CCATTACGCTGCACTGCTCT 60.742 55.000 1.98 0.00 0.00 4.09
2162 2960 6.432472 CCACTTTATTTCTCTCTGCCTCTTTT 59.568 38.462 0.00 0.00 0.00 2.27
2251 3049 6.321181 TGCATTCCTTTTCAGTAGTTTTCTGT 59.679 34.615 0.00 0.00 34.86 3.41
2278 3084 4.765813 TTAGTAACTGGAACTATGGGGC 57.234 45.455 0.00 0.00 29.86 5.80
2371 3177 5.591099 ACTTGCTATTGTTTGTTTGGAGTG 58.409 37.500 0.00 0.00 0.00 3.51
2666 3494 7.179694 AGGAATACACTAACCTACTGCAGTTTA 59.820 37.037 27.06 16.27 0.00 2.01
2667 3495 7.985752 GGAATACACTAACCTACTGCAGTTTAT 59.014 37.037 27.06 11.67 0.00 1.40
2673 3501 9.821662 CACTAACCTACTGCAGTTTATTAAAAC 57.178 33.333 27.06 0.00 44.47 2.43
2762 3602 6.395426 TCTCTTGGTTCTACGAAACACTAA 57.605 37.500 0.00 0.00 0.00 2.24
2767 3607 9.545105 TCTTGGTTCTACGAAACACTAAAATTA 57.455 29.630 0.00 0.00 0.00 1.40
2847 3764 7.155655 CCATTGGAAAATAAAAACCATTGGG 57.844 36.000 7.78 0.00 43.88 4.12
2851 3768 6.292150 TGGAAAATAAAAACCATTGGGACAC 58.708 36.000 7.78 0.00 39.29 3.67
2874 3791 5.249393 ACAGTCAGATGTTCCCTGAAACTAT 59.751 40.000 0.00 0.00 41.72 2.12
2926 3843 1.344114 GGGGATCATCTCTCTGTCTGC 59.656 57.143 0.00 0.00 0.00 4.26
2931 3848 0.248417 CATCTCTCTGTCTGCGACGG 60.248 60.000 10.17 10.17 40.02 4.79
2952 3869 2.177394 TCTTGTGTGTGTGTGTGTGT 57.823 45.000 0.00 0.00 0.00 3.72
2953 3870 1.803555 TCTTGTGTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
2954 3871 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
2955 3872 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2956 3873 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2957 3874 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2958 3875 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2959 3876 1.136565 GTGTGTGTGTGTGTGTGGC 59.863 57.895 0.00 0.00 0.00 5.01
2960 3877 2.394563 TGTGTGTGTGTGTGTGGCG 61.395 57.895 0.00 0.00 0.00 5.69
2961 3878 2.046796 TGTGTGTGTGTGTGGCGT 60.047 55.556 0.00 0.00 0.00 5.68
2962 3879 2.394563 TGTGTGTGTGTGTGGCGTG 61.395 57.895 0.00 0.00 0.00 5.34
3005 3922 0.552848 CCCAATGGTGGTAGCTGGAT 59.447 55.000 0.00 0.00 44.30 3.41
3016 3933 3.388024 TGGTAGCTGGATCCACTATGAAC 59.612 47.826 11.44 8.12 0.00 3.18
3021 3938 4.063689 GCTGGATCCACTATGAACAGATG 58.936 47.826 11.44 0.00 0.00 2.90
3024 3941 6.161855 TGGATCCACTATGAACAGATGTAC 57.838 41.667 11.44 0.00 0.00 2.90
3026 3943 4.649088 TCCACTATGAACAGATGTACCG 57.351 45.455 0.00 0.00 0.00 4.02
3041 3958 0.527565 TACCGTTGGCTTCTCGTACC 59.472 55.000 0.00 0.00 0.00 3.34
3049 3966 4.546829 TGGCTTCTCGTACCAATTTACT 57.453 40.909 0.00 0.00 0.00 2.24
3059 3976 7.496591 TCTCGTACCAATTTACTGTGAAACTTT 59.503 33.333 0.00 0.00 38.04 2.66
3062 3979 8.126700 CGTACCAATTTACTGTGAAACTTTTCT 58.873 33.333 3.48 0.00 38.02 2.52
3066 3983 9.965824 CCAATTTACTGTGAAACTTTTCTACAT 57.034 29.630 3.48 1.43 38.02 2.29
3069 3986 8.740123 TTTACTGTGAAACTTTTCTACATCCA 57.260 30.769 3.48 0.00 38.02 3.41
3162 4085 1.070615 ATGGCCAAAAACCGGTTGC 59.929 52.632 23.08 19.41 0.00 4.17
3174 4097 1.439353 CCGGTTGCCTCGATTGGATG 61.439 60.000 0.00 0.00 0.00 3.51
3199 4122 5.248640 CCATCTTGATAACACCACTTGAGT 58.751 41.667 0.00 0.00 0.00 3.41
3304 4228 1.802960 GATAGCATTCCATGTGGCGAG 59.197 52.381 0.00 0.00 34.44 5.03
3305 4229 0.541392 TAGCATTCCATGTGGCGAGT 59.459 50.000 0.00 0.00 34.44 4.18
3306 4230 1.028330 AGCATTCCATGTGGCGAGTG 61.028 55.000 0.00 0.00 34.44 3.51
3308 4232 1.002257 ATTCCATGTGGCGAGTGCA 60.002 52.632 0.00 0.00 45.35 4.57
3309 4233 0.608856 ATTCCATGTGGCGAGTGCAA 60.609 50.000 0.00 0.00 45.35 4.08
3310 4234 0.821301 TTCCATGTGGCGAGTGCAAA 60.821 50.000 0.00 0.00 45.35 3.68
3311 4235 0.821301 TCCATGTGGCGAGTGCAAAA 60.821 50.000 0.00 0.00 45.35 2.44
3312 4236 0.031857 CCATGTGGCGAGTGCAAAAA 59.968 50.000 0.00 0.00 45.35 1.94
3398 4322 0.802494 CCAACCGTTGTCCATAGCAC 59.198 55.000 10.34 0.00 0.00 4.40
3450 4374 2.368548 TGGCTGCAGAGAAAGTTGAGTA 59.631 45.455 20.43 0.00 0.00 2.59
3529 4454 0.809385 GCTAGTGGTCTGTGCGTAGA 59.191 55.000 0.00 0.00 0.00 2.59
3536 4461 2.560981 TGGTCTGTGCGTAGATTGAGAA 59.439 45.455 0.00 0.00 0.00 2.87
3544 4469 3.709653 TGCGTAGATTGAGAAATACCCCT 59.290 43.478 0.00 0.00 0.00 4.79
3548 4473 6.221659 CGTAGATTGAGAAATACCCCTTACC 58.778 44.000 0.00 0.00 0.00 2.85
3566 4491 3.601443 ACCCATTCTCGAAGAAGACTG 57.399 47.619 0.00 0.00 37.69 3.51
3672 4627 8.567948 GGTATTTTGCTAGAGCTTGCATTTATA 58.432 33.333 7.39 4.11 40.63 0.98
3703 4658 4.455877 GGCATAGATAGTCAATTTTCCCCG 59.544 45.833 0.00 0.00 0.00 5.73
3706 4661 6.464222 CATAGATAGTCAATTTTCCCCGCTA 58.536 40.000 0.00 0.00 0.00 4.26
3720 4758 6.482898 TTCCCCGCTACACTGTATTAATTA 57.517 37.500 0.00 0.00 0.00 1.40
3723 4761 6.932400 TCCCCGCTACACTGTATTAATTATTG 59.068 38.462 0.00 0.00 0.00 1.90
3766 4804 1.957113 GCCTAAACCAATGCAGAGGCT 60.957 52.381 7.10 0.00 44.94 4.58
3771 4809 2.357836 CAATGCAGAGGCTGGGGT 59.642 61.111 0.00 0.00 41.91 4.95
3772 4810 1.751927 CAATGCAGAGGCTGGGGTC 60.752 63.158 0.00 0.00 41.91 4.46
3773 4811 2.233566 AATGCAGAGGCTGGGGTCA 61.234 57.895 0.00 0.00 41.91 4.02
3779 4821 2.284995 AGGCTGGGGTCACTCCTC 60.285 66.667 0.00 0.00 37.17 3.71
3781 4823 2.363172 GGCTGGGGTCACTCCTCTC 61.363 68.421 0.00 0.00 37.63 3.20
3876 4918 3.299340 TGTTTTGAGCTCTCGGTACTC 57.701 47.619 16.19 0.00 0.00 2.59
3915 4958 0.330604 AACATCCTGCAGGCAGTGAT 59.669 50.000 28.91 17.05 42.15 3.06
3969 5012 2.368221 GGCAAGCCTCATAGAGTCATCT 59.632 50.000 3.29 0.00 39.75 2.90
4035 5078 1.452108 CCAAATCGAGTGGCTCCCC 60.452 63.158 5.07 0.00 0.00 4.81
4038 5081 1.838073 AAATCGAGTGGCTCCCCGTT 61.838 55.000 0.00 0.00 0.00 4.44
4497 5540 7.052873 AGCTAGAAATTCTCACATTGCACTAT 58.947 34.615 0.00 0.00 0.00 2.12
4659 5702 6.149474 GGAACTTTGCTGATTTAAGAGCACTA 59.851 38.462 5.63 0.00 44.81 2.74
4785 5828 4.813526 CACGCCGACGAGACTCCG 62.814 72.222 0.00 0.00 43.93 4.63
4826 5869 5.033522 AGAAGTTATCAAGTTAGGGGCTCT 58.966 41.667 0.00 0.00 0.00 4.09
4863 5909 8.749841 ATTGTCGCTCTGCTATAAGTTAATAG 57.250 34.615 0.00 0.00 33.37 1.73
5091 6138 8.335532 TCGTCTGTATGTATGTATCATCATGA 57.664 34.615 0.00 0.00 0.00 3.07
5207 6254 7.754625 TGTGTAGTTTTCTTGTAAAGGTTCAC 58.245 34.615 0.00 0.00 46.24 3.18
5209 6256 6.885376 TGTAGTTTTCTTGTAAAGGTTCACCA 59.115 34.615 0.00 0.00 46.24 4.17
5411 6463 7.979537 TCTTACAAATAAGTACTGCATGATCGT 59.020 33.333 0.00 0.00 39.18 3.73
5418 6470 2.462456 ACTGCATGATCGTGTCAACT 57.538 45.000 16.18 1.38 40.97 3.16
5431 8161 8.683615 TGATCGTGTCAACTGTTATCTATAAGT 58.316 33.333 0.00 0.00 32.78 2.24
5459 8189 3.628008 TCCGTGAGTATTCTCTAAGGCA 58.372 45.455 0.77 0.00 40.98 4.75
5535 8265 7.363268 CCCTGGCTAATTTGCTGGATATTATTC 60.363 40.741 19.21 0.00 0.00 1.75
5571 8301 9.613428 TCTTATCTACCATGTGACCTAAAATTG 57.387 33.333 0.00 0.00 0.00 2.32
5572 8302 6.699575 ATCTACCATGTGACCTAAAATTGC 57.300 37.500 0.00 0.00 0.00 3.56
5573 8303 5.815581 TCTACCATGTGACCTAAAATTGCT 58.184 37.500 0.00 0.00 0.00 3.91
5574 8304 6.245408 TCTACCATGTGACCTAAAATTGCTT 58.755 36.000 0.00 0.00 0.00 3.91
5651 8383 4.081420 TGCCTTGTGTTATTTGTTGTTGGT 60.081 37.500 0.00 0.00 0.00 3.67
5652 8384 4.269844 GCCTTGTGTTATTTGTTGTTGGTG 59.730 41.667 0.00 0.00 0.00 4.17
5653 8385 4.808364 CCTTGTGTTATTTGTTGTTGGTGG 59.192 41.667 0.00 0.00 0.00 4.61
5654 8386 5.394663 CCTTGTGTTATTTGTTGTTGGTGGA 60.395 40.000 0.00 0.00 0.00 4.02
5688 8427 6.328410 TGATATGAGGATTCAAGACTGATGGT 59.672 38.462 0.00 0.00 36.78 3.55
5696 8435 1.067295 AAGACTGATGGTTCCAGCCA 58.933 50.000 4.63 1.36 43.48 4.75
5815 8554 2.083774 TGCTAATCCTTGGTGAAAGCG 58.916 47.619 0.00 0.00 36.92 4.68
5822 8561 4.487714 TCCTTGGTGAAAGCGATCTAAT 57.512 40.909 0.00 0.00 36.92 1.73
5830 8570 6.128282 TGGTGAAAGCGATCTAATCTTTGTTC 60.128 38.462 0.00 0.00 36.92 3.18
5878 8618 0.894184 TCCGTCACCTCCTCTCACAC 60.894 60.000 0.00 0.00 0.00 3.82
5920 8660 7.410120 AACAATTATCAGGAAAAGATGGACC 57.590 36.000 0.00 0.00 0.00 4.46
5971 8711 2.232452 CTCACTGAACCGACTTGGATCT 59.768 50.000 0.00 0.00 40.14 2.75
6048 8788 0.318762 GCCATAACCGCCACCAAAAA 59.681 50.000 0.00 0.00 0.00 1.94
6049 8789 1.671556 GCCATAACCGCCACCAAAAAG 60.672 52.381 0.00 0.00 0.00 2.27
6065 8805 0.396974 AAAGGGTTTGCCAGCTGACA 60.397 50.000 17.39 7.06 36.17 3.58
6111 8851 2.075566 TGGCTTGGGACCAGTGTCA 61.076 57.895 0.00 0.00 43.65 3.58
6129 8957 7.658982 CCAGTGTCATGATAAACTGCTATATGT 59.341 37.037 21.70 0.00 38.95 2.29
6142 8970 4.090819 TGCTATATGTTCGGTGGGCTATA 58.909 43.478 0.00 0.00 0.00 1.31
6144 8972 4.401519 GCTATATGTTCGGTGGGCTATAGA 59.598 45.833 3.21 0.00 0.00 1.98
6145 8973 4.803098 ATATGTTCGGTGGGCTATAGAC 57.197 45.455 3.21 0.00 0.00 2.59
6146 8974 2.154567 TGTTCGGTGGGCTATAGACT 57.845 50.000 5.35 0.00 0.00 3.24
6148 8976 2.954318 TGTTCGGTGGGCTATAGACTAC 59.046 50.000 13.55 13.55 33.27 2.73
6149 8977 2.954318 GTTCGGTGGGCTATAGACTACA 59.046 50.000 22.25 2.41 36.10 2.74
6151 8979 2.174210 TCGGTGGGCTATAGACTACAGT 59.826 50.000 22.25 0.00 36.10 3.55
6152 8980 3.392285 TCGGTGGGCTATAGACTACAGTA 59.608 47.826 22.25 7.22 36.10 2.74
6153 8981 4.139786 CGGTGGGCTATAGACTACAGTAA 58.860 47.826 22.25 0.00 36.10 2.24
6154 8982 4.581824 CGGTGGGCTATAGACTACAGTAAA 59.418 45.833 22.25 0.00 36.10 2.01
6155 8983 5.243283 CGGTGGGCTATAGACTACAGTAAAT 59.757 44.000 22.25 0.00 36.10 1.40
6157 8985 7.361885 CGGTGGGCTATAGACTACAGTAAATAG 60.362 44.444 22.25 1.26 36.10 1.73
6158 8986 7.668886 GGTGGGCTATAGACTACAGTAAATAGA 59.331 40.741 22.25 0.00 36.10 1.98
6159 8987 8.513774 GTGGGCTATAGACTACAGTAAATAGAC 58.486 40.741 16.75 9.63 34.33 2.59
6161 8989 9.956640 GGGCTATAGACTACAGTAAATAGACTA 57.043 37.037 5.35 0.00 34.10 2.59
6169 9001 9.429359 GACTACAGTAAATAGACTATAGGCGTA 57.571 37.037 4.43 0.00 31.82 4.42
6203 9035 1.667236 TGCTCTTATTCCATGGTGCG 58.333 50.000 12.58 0.00 0.00 5.34
6204 9036 1.065491 TGCTCTTATTCCATGGTGCGT 60.065 47.619 12.58 0.00 0.00 5.24
6205 9037 1.599542 GCTCTTATTCCATGGTGCGTC 59.400 52.381 12.58 0.00 0.00 5.19
6214 9046 1.028330 CATGGTGCGTCTGCCTTGAT 61.028 55.000 0.00 0.00 41.78 2.57
6224 9056 4.501571 GCGTCTGCCTTGATATTTCCTCTA 60.502 45.833 0.00 0.00 33.98 2.43
6276 9108 9.707957 ATAGATATATCTAGTGCTTAACCTGCT 57.292 33.333 23.38 3.48 42.20 4.24
6278 9110 8.962679 AGATATATCTAGTGCTTAACCTGCTAC 58.037 37.037 13.76 0.00 34.85 3.58
6279 9111 6.978674 ATATCTAGTGCTTAACCTGCTACA 57.021 37.500 0.00 0.00 0.00 2.74
6280 9112 5.878406 ATCTAGTGCTTAACCTGCTACAT 57.122 39.130 0.00 0.00 0.00 2.29
6281 9113 5.011090 TCTAGTGCTTAACCTGCTACATG 57.989 43.478 0.00 0.00 0.00 3.21
6282 9114 2.991250 AGTGCTTAACCTGCTACATGG 58.009 47.619 0.00 0.00 0.00 3.66
6283 9115 2.571653 AGTGCTTAACCTGCTACATGGA 59.428 45.455 0.00 0.00 0.00 3.41
6284 9116 3.009033 AGTGCTTAACCTGCTACATGGAA 59.991 43.478 0.00 0.00 0.00 3.53
6285 9117 3.127030 GTGCTTAACCTGCTACATGGAAC 59.873 47.826 0.00 0.00 0.00 3.62
6286 9118 2.351726 GCTTAACCTGCTACATGGAACG 59.648 50.000 0.00 0.00 0.00 3.95
6287 9119 3.596214 CTTAACCTGCTACATGGAACGT 58.404 45.455 0.00 0.00 0.00 3.99
6288 9120 2.561478 AACCTGCTACATGGAACGTT 57.439 45.000 0.00 0.00 0.00 3.99
6289 9121 2.561478 ACCTGCTACATGGAACGTTT 57.439 45.000 0.46 0.00 0.00 3.60
6290 9122 2.858745 ACCTGCTACATGGAACGTTTT 58.141 42.857 0.46 0.00 0.00 2.43
6291 9123 2.812011 ACCTGCTACATGGAACGTTTTC 59.188 45.455 0.46 0.00 0.00 2.29
6299 9131 3.740513 GAACGTTTTCCTGCCCGT 58.259 55.556 0.46 0.00 34.56 5.28
6300 9132 2.027325 GAACGTTTTCCTGCCCGTT 58.973 52.632 0.46 0.00 45.22 4.44
6301 9133 0.382873 GAACGTTTTCCTGCCCGTTT 59.617 50.000 0.46 0.00 42.89 3.60
6302 9134 0.101579 AACGTTTTCCTGCCCGTTTG 59.898 50.000 0.00 0.00 40.27 2.93
6303 9135 1.033202 ACGTTTTCCTGCCCGTTTGT 61.033 50.000 0.00 0.00 0.00 2.83
6304 9136 0.593773 CGTTTTCCTGCCCGTTTGTG 60.594 55.000 0.00 0.00 0.00 3.33
6305 9137 0.874175 GTTTTCCTGCCCGTTTGTGC 60.874 55.000 0.00 0.00 0.00 4.57
6306 9138 1.040339 TTTTCCTGCCCGTTTGTGCT 61.040 50.000 0.00 0.00 0.00 4.40
6307 9139 1.452145 TTTCCTGCCCGTTTGTGCTC 61.452 55.000 0.00 0.00 0.00 4.26
6308 9140 2.594303 CCTGCCCGTTTGTGCTCA 60.594 61.111 0.00 0.00 0.00 4.26
6309 9141 2.639286 CTGCCCGTTTGTGCTCAC 59.361 61.111 0.00 0.00 0.00 3.51
6310 9142 2.124529 TGCCCGTTTGTGCTCACA 60.125 55.556 0.00 0.00 39.98 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.207229 GGTTGGGTTGGGTTGGCTC 61.207 63.158 0.00 0.00 0.00 4.70
62 63 2.123033 GGTTGGGTTGGGTTGGCT 60.123 61.111 0.00 0.00 0.00 4.75
63 64 3.611674 CGGTTGGGTTGGGTTGGC 61.612 66.667 0.00 0.00 0.00 4.52
64 65 3.611674 GCGGTTGGGTTGGGTTGG 61.612 66.667 0.00 0.00 0.00 3.77
65 66 3.972276 CGCGGTTGGGTTGGGTTG 61.972 66.667 0.00 0.00 0.00 3.77
131 138 0.673644 AATCGGTCCAAGGACTTGCG 60.674 55.000 18.03 13.28 44.04 4.85
132 139 1.200020 CAAATCGGTCCAAGGACTTGC 59.800 52.381 18.03 1.97 44.04 4.01
140 147 3.931907 ATGGAGATCAAATCGGTCCAA 57.068 42.857 2.10 0.00 37.23 3.53
158 165 1.593265 GGAGCCTGGCCACAAAATG 59.407 57.895 16.57 0.00 0.00 2.32
170 177 3.003763 GGTCTTGGACGGGAGCCT 61.004 66.667 0.00 0.00 32.65 4.58
189 196 0.036199 TCATCGGGGTGGTAAAACGG 60.036 55.000 0.00 0.00 0.00 4.44
200 207 0.939577 CTTCGTGCGTATCATCGGGG 60.940 60.000 0.00 0.00 0.00 5.73
278 285 0.317103 GTCCTCGGTGTGATCGATCG 60.317 60.000 20.03 9.36 36.01 3.69
419 426 2.466982 CGCAGCATCCGCACTTCAT 61.467 57.895 0.00 0.00 42.27 2.57
500 518 0.602638 TTACAACACCAGCTGCTCCG 60.603 55.000 8.66 0.00 0.00 4.63
551 569 0.462047 GATCTGGGGCTTACACGGTG 60.462 60.000 6.58 6.58 0.00 4.94
554 572 1.066143 AGTTGATCTGGGGCTTACACG 60.066 52.381 0.00 0.00 0.00 4.49
575 602 0.659957 GCCGCATTGTCTCTTCATCC 59.340 55.000 0.00 0.00 0.00 3.51
636 664 6.412214 TGCATATAATAGCTGCTGATCATGT 58.588 36.000 13.43 0.00 36.84 3.21
797 838 0.317799 CGGAGGATCTGGAGCATCAG 59.682 60.000 3.14 0.51 38.01 2.90
798 839 1.752358 GCGGAGGATCTGGAGCATCA 61.752 60.000 3.14 0.00 43.35 3.07
903 944 4.800914 GCTGAACTGGTAGCTCAGAAAGAA 60.801 45.833 12.41 0.00 40.03 2.52
909 950 0.107945 GGGCTGAACTGGTAGCTCAG 60.108 60.000 0.00 0.00 40.45 3.35
936 977 1.122680 GTCGCGAAGAAAAGTCGTCTG 59.877 52.381 12.06 0.00 40.64 3.51
939 980 0.942884 GGGTCGCGAAGAAAAGTCGT 60.943 55.000 12.06 0.00 40.64 4.34
940 981 0.666577 AGGGTCGCGAAGAAAAGTCG 60.667 55.000 12.06 0.00 41.46 4.18
1361 2138 1.664965 GTCGAGCACCTTGAAGCGT 60.665 57.895 0.00 0.00 35.48 5.07
1547 2342 2.281484 GTGTCCAAGCCGAAGCCA 60.281 61.111 0.00 0.00 41.25 4.75
1764 2562 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
1765 2563 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
1766 2564 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
1767 2565 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
1768 2566 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
1778 2576 8.703743 ACTTCAGAGAATTCTAATATGCAGAGT 58.296 33.333 8.25 7.29 30.73 3.24
1779 2577 9.195411 GACTTCAGAGAATTCTAATATGCAGAG 57.805 37.037 8.25 6.79 30.73 3.35
1780 2578 8.699130 TGACTTCAGAGAATTCTAATATGCAGA 58.301 33.333 8.25 0.00 30.73 4.26
1781 2579 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
1782 2580 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
1783 2581 9.928236 GTTTGACTTCAGAGAATTCTAATATGC 57.072 33.333 8.25 0.00 30.73 3.14
1811 2609 9.438228 TCATATAAATACGGTCAAACTTTGTGA 57.562 29.630 1.44 0.00 0.00 3.58
1838 2636 6.229936 AGCATGGCAGATGTTGATATTTTT 57.770 33.333 0.00 0.00 0.00 1.94
1839 2637 5.864418 AGCATGGCAGATGTTGATATTTT 57.136 34.783 0.00 0.00 0.00 1.82
1840 2638 6.964807 TTAGCATGGCAGATGTTGATATTT 57.035 33.333 0.00 0.00 0.00 1.40
1841 2639 6.548622 ACTTTAGCATGGCAGATGTTGATATT 59.451 34.615 0.00 0.00 0.00 1.28
1842 2640 6.016527 CACTTTAGCATGGCAGATGTTGATAT 60.017 38.462 0.00 0.00 0.00 1.63
1843 2641 5.297527 CACTTTAGCATGGCAGATGTTGATA 59.702 40.000 0.00 0.00 0.00 2.15
1844 2642 4.097437 CACTTTAGCATGGCAGATGTTGAT 59.903 41.667 0.00 0.00 0.00 2.57
1845 2643 3.441222 CACTTTAGCATGGCAGATGTTGA 59.559 43.478 0.00 0.00 0.00 3.18
1846 2644 3.441222 TCACTTTAGCATGGCAGATGTTG 59.559 43.478 0.00 0.00 0.00 3.33
1847 2645 3.689347 TCACTTTAGCATGGCAGATGTT 58.311 40.909 0.00 0.00 0.00 2.71
1848 2646 3.354948 TCACTTTAGCATGGCAGATGT 57.645 42.857 0.00 0.00 0.00 3.06
1849 2647 4.084171 CGTATCACTTTAGCATGGCAGATG 60.084 45.833 0.00 0.00 0.00 2.90
1850 2648 4.060900 CGTATCACTTTAGCATGGCAGAT 58.939 43.478 0.00 0.00 0.00 2.90
1851 2649 3.132111 TCGTATCACTTTAGCATGGCAGA 59.868 43.478 0.00 0.00 0.00 4.26
1852 2650 3.457234 TCGTATCACTTTAGCATGGCAG 58.543 45.455 0.00 0.00 0.00 4.85
1853 2651 3.535280 TCGTATCACTTTAGCATGGCA 57.465 42.857 0.00 0.00 0.00 4.92
1854 2652 5.869344 TCATATCGTATCACTTTAGCATGGC 59.131 40.000 0.00 0.00 0.00 4.40
1855 2653 7.889589 TTCATATCGTATCACTTTAGCATGG 57.110 36.000 0.00 0.00 0.00 3.66
1856 2654 8.982685 AGTTTCATATCGTATCACTTTAGCATG 58.017 33.333 0.00 0.00 0.00 4.06
1857 2655 9.547753 AAGTTTCATATCGTATCACTTTAGCAT 57.452 29.630 0.00 0.00 0.00 3.79
1858 2656 8.942338 AAGTTTCATATCGTATCACTTTAGCA 57.058 30.769 0.00 0.00 0.00 3.49
1869 2667 9.863845 TGTCATGACTTAAAGTTTCATATCGTA 57.136 29.630 25.55 0.00 0.00 3.43
1870 2668 8.656849 GTGTCATGACTTAAAGTTTCATATCGT 58.343 33.333 25.55 0.00 0.00 3.73
1871 2669 8.655970 TGTGTCATGACTTAAAGTTTCATATCG 58.344 33.333 25.55 0.00 0.00 2.92
1874 2672 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
1875 2673 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
1876 2674 9.725019 ATAGATGTGTCATGACTTAAAGTTTCA 57.275 29.630 25.55 11.05 0.00 2.69
1879 2677 9.725019 TCAATAGATGTGTCATGACTTAAAGTT 57.275 29.630 25.55 10.34 0.00 2.66
1880 2678 9.896645 ATCAATAGATGTGTCATGACTTAAAGT 57.103 29.630 25.55 9.39 31.91 2.66
1905 2703 9.811995 CCAACATTGACAATCTGAAATCAATAT 57.188 29.630 11.64 2.12 39.25 1.28
1906 2704 8.805175 ACCAACATTGACAATCTGAAATCAATA 58.195 29.630 11.64 0.00 39.25 1.90
1907 2705 7.673180 ACCAACATTGACAATCTGAAATCAAT 58.327 30.769 0.00 7.98 41.37 2.57
1908 2706 7.053316 ACCAACATTGACAATCTGAAATCAA 57.947 32.000 0.00 4.68 35.64 2.57
1909 2707 6.653526 ACCAACATTGACAATCTGAAATCA 57.346 33.333 0.00 0.00 0.00 2.57
1910 2708 7.820648 AGTACCAACATTGACAATCTGAAATC 58.179 34.615 0.00 0.00 0.00 2.17
1911 2709 7.765695 AGTACCAACATTGACAATCTGAAAT 57.234 32.000 0.00 0.00 0.00 2.17
1912 2710 7.581213 AAGTACCAACATTGACAATCTGAAA 57.419 32.000 0.00 0.00 0.00 2.69
1913 2711 7.581213 AAAGTACCAACATTGACAATCTGAA 57.419 32.000 0.00 0.00 0.00 3.02
1914 2712 7.581213 AAAAGTACCAACATTGACAATCTGA 57.419 32.000 0.00 0.00 0.00 3.27
1948 2746 6.721321 TCAATCTTCGTAAAGTTTGACCAAC 58.279 36.000 0.00 0.00 42.30 3.77
1949 2747 6.928979 TCAATCTTCGTAAAGTTTGACCAA 57.071 33.333 0.00 0.00 42.30 3.67
1971 2769 7.234187 TCGCATATAACATTTGACTGAAGTC 57.766 36.000 3.41 3.41 44.97 3.01
1972 2770 7.334421 AGTTCGCATATAACATTTGACTGAAGT 59.666 33.333 0.00 0.00 0.00 3.01
1973 2771 7.688372 AGTTCGCATATAACATTTGACTGAAG 58.312 34.615 0.00 0.00 0.00 3.02
1974 2772 7.609760 AGTTCGCATATAACATTTGACTGAA 57.390 32.000 0.00 0.00 0.00 3.02
1975 2773 8.710835 TTAGTTCGCATATAACATTTGACTGA 57.289 30.769 0.00 0.00 0.00 3.41
1976 2774 9.767684 TTTTAGTTCGCATATAACATTTGACTG 57.232 29.630 0.00 0.00 0.00 3.51
1979 2777 9.781834 CCTTTTTAGTTCGCATATAACATTTGA 57.218 29.630 0.00 0.00 0.00 2.69
1980 2778 9.781834 TCCTTTTTAGTTCGCATATAACATTTG 57.218 29.630 0.00 0.00 0.00 2.32
1981 2779 9.783256 GTCCTTTTTAGTTCGCATATAACATTT 57.217 29.630 0.00 0.00 0.00 2.32
1982 2780 8.403236 GGTCCTTTTTAGTTCGCATATAACATT 58.597 33.333 0.00 0.00 0.00 2.71
1983 2781 7.254658 CGGTCCTTTTTAGTTCGCATATAACAT 60.255 37.037 0.00 0.00 0.00 2.71
1984 2782 6.036300 CGGTCCTTTTTAGTTCGCATATAACA 59.964 38.462 0.00 0.00 0.00 2.41
1985 2783 6.416514 CGGTCCTTTTTAGTTCGCATATAAC 58.583 40.000 0.00 0.00 0.00 1.89
1986 2784 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
1987 2785 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
1988 2786 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
1989 2787 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
1990 2788 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
1991 2789 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
1992 2790 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
1993 2791 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
1994 2792 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
1995 2793 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
1996 2794 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
1997 2795 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
1998 2796 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1999 2797 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2000 2798 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
2001 2799 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
2002 2800 0.033306 GAGTACTCCCTCCGGTCCTT 60.033 60.000 12.13 0.00 0.00 3.36
2003 2801 1.614160 GAGTACTCCCTCCGGTCCT 59.386 63.158 12.13 0.00 0.00 3.85
2004 2802 1.455402 GGAGTACTCCCTCCGGTCC 60.455 68.421 28.87 3.41 43.94 4.46
2005 2803 4.256462 GGAGTACTCCCTCCGGTC 57.744 66.667 28.87 3.26 43.94 4.79
2014 2812 5.988287 ACTACCACTACTACAGGAGTACTC 58.012 45.833 14.87 14.87 39.81 2.59
2015 2813 6.013032 TGAACTACCACTACTACAGGAGTACT 60.013 42.308 0.00 0.00 39.81 2.73
2016 2814 6.176183 TGAACTACCACTACTACAGGAGTAC 58.824 44.000 0.00 0.00 39.81 2.73
2017 2815 6.378661 TGAACTACCACTACTACAGGAGTA 57.621 41.667 0.00 0.00 39.81 2.59
2018 2816 5.252586 TGAACTACCACTACTACAGGAGT 57.747 43.478 0.00 0.00 42.69 3.85
2019 2817 4.641094 CCTGAACTACCACTACTACAGGAG 59.359 50.000 0.00 0.00 44.08 3.69
2020 2818 4.043812 ACCTGAACTACCACTACTACAGGA 59.956 45.833 15.22 0.00 44.08 3.86
2021 2819 4.342359 ACCTGAACTACCACTACTACAGG 58.658 47.826 0.00 0.00 45.93 4.00
2022 2820 6.179040 ACTACCTGAACTACCACTACTACAG 58.821 44.000 0.00 0.00 0.00 2.74
2278 3084 3.136123 CAACTCGCAGGGGCCATG 61.136 66.667 15.10 15.10 36.38 3.66
2346 3152 6.636850 CACTCCAAACAAACAATAGCAAGTAC 59.363 38.462 0.00 0.00 0.00 2.73
2371 3177 5.278022 GGATATGAAACCTGCGAAGAATTCC 60.278 44.000 0.65 0.00 43.81 3.01
2608 3428 9.569122 AAATTAGTTAGGCAAAAGAGTTGACTA 57.431 29.630 0.00 0.00 38.91 2.59
2762 3602 8.899887 TCAAGGAGGAAATCAGGAAATAATTT 57.100 30.769 0.00 0.00 0.00 1.82
2767 3607 7.059156 CACTATCAAGGAGGAAATCAGGAAAT 58.941 38.462 0.00 0.00 0.00 2.17
2768 3608 6.012508 ACACTATCAAGGAGGAAATCAGGAAA 60.013 38.462 0.00 0.00 0.00 3.13
2769 3609 5.488919 ACACTATCAAGGAGGAAATCAGGAA 59.511 40.000 0.00 0.00 0.00 3.36
2770 3610 5.032846 ACACTATCAAGGAGGAAATCAGGA 58.967 41.667 0.00 0.00 0.00 3.86
2771 3611 5.365021 ACACTATCAAGGAGGAAATCAGG 57.635 43.478 0.00 0.00 0.00 3.86
2772 3612 7.871973 CAGATACACTATCAAGGAGGAAATCAG 59.128 40.741 0.00 0.00 37.65 2.90
2773 3613 7.687837 GCAGATACACTATCAAGGAGGAAATCA 60.688 40.741 0.00 0.00 37.65 2.57
2774 3614 6.648725 GCAGATACACTATCAAGGAGGAAATC 59.351 42.308 0.00 0.00 37.65 2.17
2847 3764 2.300152 TCAGGGAACATCTGACTGTGTC 59.700 50.000 0.00 0.00 36.46 3.67
2851 3768 4.013267 AGTTTCAGGGAACATCTGACTG 57.987 45.455 0.00 0.00 40.51 3.51
2926 3843 0.300491 CACACACACAAGAACCGTCG 59.700 55.000 0.00 0.00 0.00 5.12
2931 3848 2.225491 ACACACACACACACACAAGAAC 59.775 45.455 0.00 0.00 0.00 3.01
2952 3869 2.738139 CGATCAGCACGCCACACA 60.738 61.111 0.00 0.00 0.00 3.72
2953 3870 2.738521 ACGATCAGCACGCCACAC 60.739 61.111 0.00 0.00 0.00 3.82
2954 3871 2.738139 CACGATCAGCACGCCACA 60.738 61.111 0.00 0.00 0.00 4.17
2955 3872 3.490759 CCACGATCAGCACGCCAC 61.491 66.667 0.00 0.00 0.00 5.01
2956 3873 4.758251 CCCACGATCAGCACGCCA 62.758 66.667 0.00 0.00 0.00 5.69
2957 3874 4.760047 ACCCACGATCAGCACGCC 62.760 66.667 0.00 0.00 0.00 5.68
2958 3875 3.188786 GACCCACGATCAGCACGC 61.189 66.667 0.00 0.00 0.00 5.34
2959 3876 2.509336 GGACCCACGATCAGCACG 60.509 66.667 0.00 0.00 0.00 5.34
2960 3877 1.741770 GTGGACCCACGATCAGCAC 60.742 63.158 3.13 0.00 37.19 4.40
2961 3878 2.662596 GTGGACCCACGATCAGCA 59.337 61.111 3.13 0.00 37.19 4.41
3005 3922 4.021229 ACGGTACATCTGTTCATAGTGGA 58.979 43.478 0.00 0.00 30.45 4.02
3016 3933 2.271800 GAGAAGCCAACGGTACATCTG 58.728 52.381 0.00 0.00 0.00 2.90
3021 3938 1.622232 GTACGAGAAGCCAACGGTAC 58.378 55.000 0.00 0.00 0.00 3.34
3024 3941 0.320073 TTGGTACGAGAAGCCAACGG 60.320 55.000 0.00 0.00 37.36 4.44
3026 3943 4.694037 AGTAAATTGGTACGAGAAGCCAAC 59.306 41.667 0.00 0.00 43.93 3.77
3049 3966 7.639113 ACTTTGGATGTAGAAAAGTTTCACA 57.361 32.000 6.56 8.45 40.34 3.58
3059 3976 9.349713 ACAAGTGAATTAACTTTGGATGTAGAA 57.650 29.630 5.36 0.00 38.34 2.10
3139 4062 0.605589 CCGGTTTTTGGCCATGCTTA 59.394 50.000 6.09 0.00 0.00 3.09
3148 4071 1.007849 CGAGGCAACCGGTTTTTGG 60.008 57.895 19.55 7.65 37.17 3.28
3174 4097 3.004752 AGTGGTGTTATCAAGATGGGC 57.995 47.619 0.00 0.00 0.00 5.36
3223 4146 6.010219 AGACTTTGGTGGTATTTAAGTGCAT 58.990 36.000 0.00 0.00 0.00 3.96
3269 4193 1.605710 GCTATCAGCATTTGACGGCAT 59.394 47.619 0.00 0.00 41.89 4.40
3330 4254 0.763652 TTGGTTTGGCATGGCAATGT 59.236 45.000 32.28 0.00 36.08 2.71
3334 4258 1.340399 TGGTTTGGTTTGGCATGGCA 61.340 50.000 19.43 19.43 0.00 4.92
3338 4262 1.416030 GGACTTGGTTTGGTTTGGCAT 59.584 47.619 0.00 0.00 0.00 4.40
3398 4322 2.139484 CCTGCTCCCCTGGCTCTAG 61.139 68.421 0.00 0.00 0.00 2.43
3450 4374 7.810260 AGAAGTGATTGGCCTTCTAATTATCT 58.190 34.615 3.32 0.00 44.18 1.98
3529 4454 6.162241 AGAATGGGTAAGGGGTATTTCTCAAT 59.838 38.462 0.00 0.00 0.00 2.57
3536 4461 3.660959 TCGAGAATGGGTAAGGGGTATT 58.339 45.455 0.00 0.00 0.00 1.89
3544 4469 4.527038 ACAGTCTTCTTCGAGAATGGGTAA 59.473 41.667 7.18 0.00 43.86 2.85
3548 4473 5.746245 GTGATACAGTCTTCTTCGAGAATGG 59.254 44.000 7.18 0.00 43.86 3.16
3595 4521 8.260818 CCACCTGAATTTCTCTCTGTTAGATTA 58.739 37.037 0.00 0.00 32.41 1.75
3616 4571 3.713826 ATTTCAACACCGATACCACCT 57.286 42.857 0.00 0.00 0.00 4.00
3720 4758 9.174166 CCTATACTACAAAGCACCTTAAACAAT 57.826 33.333 0.00 0.00 0.00 2.71
3723 4761 6.037940 GGCCTATACTACAAAGCACCTTAAAC 59.962 42.308 0.00 0.00 0.00 2.01
3766 4804 0.487325 TTCAGAGAGGAGTGACCCCA 59.513 55.000 0.00 0.00 40.05 4.96
3848 4890 5.122396 ACCGAGAGCTCAAAACATTAATCAC 59.878 40.000 17.77 0.00 0.00 3.06
3856 4898 2.626266 TGAGTACCGAGAGCTCAAAACA 59.374 45.455 17.77 2.25 36.46 2.83
3876 4918 5.761003 TGTTCACAAGCATGAGTTACAATG 58.239 37.500 0.00 0.00 0.00 2.82
3915 4958 3.620488 GCTCAATTTCTGGTCCACCATA 58.380 45.455 0.00 0.00 46.46 2.74
3969 5012 0.895530 CCGTAGTCCCTCTCTTTGCA 59.104 55.000 0.00 0.00 0.00 4.08
4035 5078 1.403679 TGCAACTTCCCAAGTGAAACG 59.596 47.619 0.00 0.00 45.86 3.60
4038 5081 3.011566 TCTTGCAACTTCCCAAGTGAA 57.988 42.857 0.00 0.00 41.91 3.18
4617 5660 6.715347 AAGTTCCTGCTGACATTTAACTTT 57.285 33.333 0.00 0.00 32.42 2.66
4785 5828 4.221041 ACTTCTCTTGGTGGTACTTCTAGC 59.779 45.833 0.00 0.00 0.00 3.42
4826 5869 4.629634 CAGAGCGACAATAAATACACACCA 59.370 41.667 0.00 0.00 0.00 4.17
5091 6138 3.424703 CTGACCTGGGACATGAACAAAT 58.575 45.455 0.00 0.00 38.20 2.32
5240 6287 4.038763 CAGGTGGAGTTACACACAGAAGTA 59.961 45.833 11.16 0.00 43.08 2.24
5418 6470 9.346005 TCACGGATCTACAACTTATAGATAACA 57.654 33.333 0.00 0.00 39.09 2.41
5431 8161 7.228906 CCTTAGAGAATACTCACGGATCTACAA 59.771 40.741 0.00 0.00 44.79 2.41
5441 8171 6.458232 TCTCTTGCCTTAGAGAATACTCAC 57.542 41.667 7.58 0.00 45.74 3.51
5459 8189 9.794719 ACATGAATATCATCATTGTCATCTCTT 57.205 29.630 0.00 0.00 37.96 2.85
5499 8229 5.534654 GCAAATTAGCCAGGGTATGTTATGA 59.465 40.000 0.00 0.00 0.00 2.15
5651 8383 8.838741 TGAATCCTCATATCAATTATCCATCCA 58.161 33.333 0.00 0.00 0.00 3.41
5652 8384 9.690913 TTGAATCCTCATATCAATTATCCATCC 57.309 33.333 0.00 0.00 0.00 3.51
5688 8427 4.033709 AGTAATAGAGAGCTTGGCTGGAA 58.966 43.478 0.00 0.00 39.88 3.53
5696 8435 6.544650 TCTCCGGATAAGTAATAGAGAGCTT 58.455 40.000 3.57 0.00 0.00 3.74
5822 8561 9.013229 ACAGCTTATTGTCATATTGAACAAAGA 57.987 29.630 0.00 0.00 0.00 2.52
5878 8618 2.977772 TTTGTCCCAGCAAACAAAGG 57.022 45.000 0.00 0.00 39.70 3.11
6021 8761 1.819632 GCGGTTATGGCCTCCAGTG 60.820 63.158 3.32 0.00 36.75 3.66
6048 8788 0.396974 TTTGTCAGCTGGCAAACCCT 60.397 50.000 36.08 0.00 43.75 4.34
6049 8789 2.123409 TTTGTCAGCTGGCAAACCC 58.877 52.632 36.08 7.80 43.75 4.11
6108 8848 7.385205 ACCGAACATATAGCAGTTTATCATGAC 59.615 37.037 0.00 0.00 0.00 3.06
6111 8851 6.650807 CCACCGAACATATAGCAGTTTATCAT 59.349 38.462 0.00 0.00 0.00 2.45
6129 8957 3.220110 CTGTAGTCTATAGCCCACCGAA 58.780 50.000 0.00 0.00 0.00 4.30
6142 8970 8.156165 ACGCCTATAGTCTATTTACTGTAGTCT 58.844 37.037 0.00 0.00 38.71 3.24
6144 8972 9.956640 ATACGCCTATAGTCTATTTACTGTAGT 57.043 33.333 0.00 0.00 38.71 2.73
6152 8980 9.026121 ACAGATGAATACGCCTATAGTCTATTT 57.974 33.333 0.00 0.00 0.00 1.40
6153 8981 8.582657 ACAGATGAATACGCCTATAGTCTATT 57.417 34.615 0.00 0.00 0.00 1.73
6154 8982 9.854668 ATACAGATGAATACGCCTATAGTCTAT 57.145 33.333 0.00 0.00 0.00 1.98
6155 8983 9.327628 GATACAGATGAATACGCCTATAGTCTA 57.672 37.037 0.00 0.00 0.00 2.59
6157 8985 7.067129 TGGATACAGATGAATACGCCTATAGTC 59.933 40.741 0.00 0.00 46.17 2.59
6158 8986 6.890268 TGGATACAGATGAATACGCCTATAGT 59.110 38.462 0.00 0.00 46.17 2.12
6159 8987 7.334844 TGGATACAGATGAATACGCCTATAG 57.665 40.000 0.00 0.00 46.17 1.31
6201 9033 2.545946 GAGGAAATATCAAGGCAGACGC 59.454 50.000 0.00 0.00 37.44 5.19
6203 9035 5.071115 ACCTAGAGGAAATATCAAGGCAGAC 59.929 44.000 1.60 0.00 38.94 3.51
6204 9036 5.219739 ACCTAGAGGAAATATCAAGGCAGA 58.780 41.667 1.60 0.00 38.94 4.26
6205 9037 5.559148 ACCTAGAGGAAATATCAAGGCAG 57.441 43.478 1.60 0.00 38.94 4.85
6214 9046 7.940850 GCATTTGCAATAACCTAGAGGAAATA 58.059 34.615 0.00 0.00 41.59 1.40
6250 9082 9.707957 AGCAGGTTAAGCACTAGATATATCTAT 57.292 33.333 20.31 9.74 38.60 1.98
6252 9084 8.962679 GTAGCAGGTTAAGCACTAGATATATCT 58.037 37.037 18.99 18.99 40.86 1.98
6253 9085 8.740906 TGTAGCAGGTTAAGCACTAGATATATC 58.259 37.037 7.52 4.42 0.00 1.63
6254 9086 8.651589 TGTAGCAGGTTAAGCACTAGATATAT 57.348 34.615 7.52 0.00 0.00 0.86
6255 9087 8.523658 CATGTAGCAGGTTAAGCACTAGATATA 58.476 37.037 7.52 0.00 0.00 0.86
6256 9088 6.978674 TGTAGCAGGTTAAGCACTAGATAT 57.021 37.500 7.52 0.00 0.00 1.63
6257 9089 6.239317 CCATGTAGCAGGTTAAGCACTAGATA 60.239 42.308 7.52 0.00 0.00 1.98
6258 9090 5.453903 CCATGTAGCAGGTTAAGCACTAGAT 60.454 44.000 7.52 9.02 0.00 1.98
6259 9091 4.141937 CCATGTAGCAGGTTAAGCACTAGA 60.142 45.833 7.52 7.16 0.00 2.43
6260 9092 4.122776 CCATGTAGCAGGTTAAGCACTAG 58.877 47.826 7.52 0.00 0.00 2.57
6261 9093 3.772572 TCCATGTAGCAGGTTAAGCACTA 59.227 43.478 7.52 5.47 0.00 2.74
6262 9094 2.571653 TCCATGTAGCAGGTTAAGCACT 59.428 45.455 7.52 6.46 0.00 4.40
6263 9095 2.985896 TCCATGTAGCAGGTTAAGCAC 58.014 47.619 7.52 0.00 0.00 4.40
6264 9096 3.343617 GTTCCATGTAGCAGGTTAAGCA 58.656 45.455 7.52 0.00 0.00 3.91
6265 9097 2.351726 CGTTCCATGTAGCAGGTTAAGC 59.648 50.000 0.00 0.00 0.00 3.09
6266 9098 3.596214 ACGTTCCATGTAGCAGGTTAAG 58.404 45.455 0.00 0.00 0.00 1.85
6267 9099 3.688694 ACGTTCCATGTAGCAGGTTAA 57.311 42.857 0.00 0.00 0.00 2.01
6268 9100 3.688694 AACGTTCCATGTAGCAGGTTA 57.311 42.857 0.00 0.00 0.00 2.85
6269 9101 2.561478 AACGTTCCATGTAGCAGGTT 57.439 45.000 0.00 0.00 0.00 3.50
6270 9102 2.561478 AAACGTTCCATGTAGCAGGT 57.439 45.000 0.00 0.00 0.00 4.00
6271 9103 3.471495 GAAAACGTTCCATGTAGCAGG 57.529 47.619 0.00 0.00 0.00 4.85
6282 9114 2.027325 AACGGGCAGGAAAACGTTC 58.973 52.632 0.00 0.00 45.15 3.95
6283 9115 4.246053 AACGGGCAGGAAAACGTT 57.754 50.000 0.00 0.00 43.74 3.99
6284 9116 1.033202 ACAAACGGGCAGGAAAACGT 61.033 50.000 0.00 0.00 41.88 3.99
6285 9117 0.593773 CACAAACGGGCAGGAAAACG 60.594 55.000 0.00 0.00 0.00 3.60
6286 9118 0.874175 GCACAAACGGGCAGGAAAAC 60.874 55.000 0.00 0.00 0.00 2.43
6287 9119 1.040339 AGCACAAACGGGCAGGAAAA 61.040 50.000 0.00 0.00 0.00 2.29
6288 9120 1.452145 GAGCACAAACGGGCAGGAAA 61.452 55.000 0.00 0.00 0.00 3.13
6289 9121 1.896660 GAGCACAAACGGGCAGGAA 60.897 57.895 0.00 0.00 0.00 3.36
6290 9122 2.281484 GAGCACAAACGGGCAGGA 60.281 61.111 0.00 0.00 0.00 3.86
6291 9123 2.594303 TGAGCACAAACGGGCAGG 60.594 61.111 0.00 0.00 0.00 4.85
6292 9124 2.186160 TGTGAGCACAAACGGGCAG 61.186 57.895 0.00 0.00 38.56 4.85
6293 9125 2.124529 TGTGAGCACAAACGGGCA 60.125 55.556 0.00 0.00 38.56 5.36
6294 9126 2.331451 GTGTGAGCACAAACGGGC 59.669 61.111 4.68 0.00 43.77 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.