Multiple sequence alignment - TraesCS1A01G189500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G189500 chr1A 100.000 5724 0 0 1 5724 342879854 342874131 0.000000e+00 10571.0
1 TraesCS1A01G189500 chr1A 89.049 831 72 9 858 1674 343395056 343394231 0.000000e+00 1013.0
2 TraesCS1A01G189500 chr1A 86.359 887 102 11 3178 4048 343391721 343390838 0.000000e+00 950.0
3 TraesCS1A01G189500 chr1A 82.494 834 92 26 2343 3135 343392518 343391698 0.000000e+00 682.0
4 TraesCS1A01G189500 chr1A 88.889 396 35 4 4145 4533 343390682 343390289 4.010000e-131 479.0
5 TraesCS1A01G189500 chr1A 81.675 633 57 26 1674 2295 343394285 343393701 6.710000e-129 472.0
6 TraesCS1A01G189500 chr1A 87.402 381 37 8 4643 5023 343390260 343389891 1.470000e-115 427.0
7 TraesCS1A01G189500 chr1A 87.179 156 11 3 5190 5345 343389780 343389634 9.860000e-38 169.0
8 TraesCS1A01G189500 chr1D 95.974 3477 98 14 690 4147 258356079 258359532 0.000000e+00 5607.0
9 TraesCS1A01G189500 chr1D 95.327 856 23 7 4145 5000 258359572 258360410 0.000000e+00 1343.0
10 TraesCS1A01G189500 chr1D 96.314 624 11 4 5111 5724 258391589 258392210 0.000000e+00 1014.0
11 TraesCS1A01G189500 chr1D 90.155 772 62 8 909 1674 258346049 258346812 0.000000e+00 992.0
12 TraesCS1A01G189500 chr1D 82.982 758 77 21 2413 3131 258349996 258350740 6.250000e-179 638.0
13 TraesCS1A01G189500 chr1D 87.763 523 57 5 3135 3653 258350860 258351379 6.340000e-169 604.0
14 TraesCS1A01G189500 chr1D 90.231 389 33 5 4145 4530 258351868 258352254 2.380000e-138 503.0
15 TraesCS1A01G189500 chr1D 85.379 383 38 10 4643 5023 258352286 258352652 1.160000e-101 381.0
16 TraesCS1A01G189500 chr1D 81.944 432 47 17 1674 2094 258346758 258347169 2.560000e-88 337.0
17 TraesCS1A01G189500 chr1D 98.851 87 1 0 5025 5111 258360397 258360483 7.680000e-34 156.0
18 TraesCS1A01G189500 chr1B 93.468 1730 63 17 905 2623 354545569 354543879 0.000000e+00 2523.0
19 TraesCS1A01G189500 chr1B 95.673 1225 39 4 2610 3825 354543852 354542633 0.000000e+00 1956.0
20 TraesCS1A01G189500 chr1B 95.130 965 44 3 4145 5106 354542286 354541322 0.000000e+00 1519.0
21 TraesCS1A01G189500 chr1B 89.049 831 66 11 858 1674 354660747 354659928 0.000000e+00 1007.0
22 TraesCS1A01G189500 chr1B 91.720 628 32 10 5102 5724 354517247 354516635 0.000000e+00 854.0
23 TraesCS1A01G189500 chr1B 83.813 834 86 27 2343 3135 354657937 354657112 0.000000e+00 747.0
24 TraesCS1A01G189500 chr1B 88.554 498 50 5 3178 3671 354657135 354656641 1.060000e-166 597.0
25 TraesCS1A01G189500 chr1B 82.261 637 57 33 1674 2296 354659982 354659388 3.080000e-137 499.0
26 TraesCS1A01G189500 chr1B 88.750 400 32 5 4145 4533 354656185 354655788 1.440000e-130 477.0
27 TraesCS1A01G189500 chr1B 85.629 334 37 9 4643 4976 354655759 354655437 1.980000e-89 340.0
28 TraesCS1A01G189500 chr1B 87.460 311 17 4 3858 4147 354542635 354542326 7.100000e-89 339.0
29 TraesCS1A01G189500 chr1B 76.974 152 19 9 433 572 45065186 45065333 7.960000e-09 73.1
30 TraesCS1A01G189500 chr5D 80.820 610 73 27 2 584 349097947 349097355 6.810000e-119 438.0
31 TraesCS1A01G189500 chr6B 82.482 411 58 11 39 444 697473132 697473533 1.180000e-91 348.0
32 TraesCS1A01G189500 chr6B 81.513 238 35 8 5 238 35834769 35834537 2.720000e-43 187.0
33 TraesCS1A01G189500 chr6B 97.368 38 1 0 503 540 184548193 184548156 1.330000e-06 65.8
34 TraesCS1A01G189500 chr6A 86.923 130 17 0 3427 3556 233345052 233345181 4.620000e-31 147.0
35 TraesCS1A01G189500 chr5B 78.947 152 21 7 402 542 489152839 489152990 6.110000e-15 93.5
36 TraesCS1A01G189500 chr2B 83.654 104 11 5 442 542 100223669 100223769 6.110000e-15 93.5
37 TraesCS1A01G189500 chr4B 78.667 150 20 5 434 572 38598354 38598206 7.900000e-14 89.8
38 TraesCS1A01G189500 chr3B 82.857 105 11 6 442 543 786862384 786862284 2.840000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G189500 chr1A 342874131 342879854 5723 True 10571.000000 10571 100.000000 1 5724 1 chr1A.!!$R1 5723
1 TraesCS1A01G189500 chr1A 343389634 343395056 5422 True 598.857143 1013 86.149571 858 5345 7 chr1A.!!$R2 4487
2 TraesCS1A01G189500 chr1D 258346049 258360483 14434 False 1173.444444 5607 89.845111 690 5111 9 chr1D.!!$F2 4421
3 TraesCS1A01G189500 chr1D 258391589 258392210 621 False 1014.000000 1014 96.314000 5111 5724 1 chr1D.!!$F1 613
4 TraesCS1A01G189500 chr1B 354541322 354545569 4247 True 1584.250000 2523 92.932750 905 5106 4 chr1B.!!$R2 4201
5 TraesCS1A01G189500 chr1B 354516635 354517247 612 True 854.000000 854 91.720000 5102 5724 1 chr1B.!!$R1 622
6 TraesCS1A01G189500 chr1B 354655437 354660747 5310 True 611.166667 1007 86.342667 858 4976 6 chr1B.!!$R3 4118
7 TraesCS1A01G189500 chr5D 349097355 349097947 592 True 438.000000 438 80.820000 2 584 1 chr5D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 868 0.037590 ATGCTGTACCGAAAAGCCCA 59.962 50.000 0.18 0.0 36.05 5.36 F
868 870 0.321298 GCTGTACCGAAAAGCCCAGA 60.321 55.000 0.00 0.0 0.00 3.86 F
890 892 0.834612 AAACAACACCTGGAGACGGA 59.165 50.000 0.00 0.0 39.98 4.69 F
2464 14247 0.890683 CAGCCCGGAAGCTTGAAATT 59.109 50.000 2.10 0.0 42.61 1.82 F
2836 14679 1.335324 GCGATGGATGCCATTAAGCAC 60.335 52.381 13.62 0.0 45.26 4.40 F
3723 15571 0.035458 GGTGTGCCACTGCTTCTAGT 59.965 55.000 0.00 0.0 38.71 2.57 F
4062 15952 1.618837 TCAGCTCGGCCATCCTTATAC 59.381 52.381 2.24 0.0 0.00 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 12285 0.747255 CTGGTCATGTAGGGAGGACG 59.253 60.000 0.00 0.00 0.00 4.79 R
2817 14660 1.069703 CGTGCTTAATGGCATCCATCG 60.070 52.381 0.00 0.00 44.40 3.84 R
2836 14679 2.485426 ACAAAATCTCACATCCACTGCG 59.515 45.455 0.00 0.00 0.00 5.18 R
3367 15214 0.179029 AATTGGCGGTCGGATTAGGG 60.179 55.000 0.00 0.00 0.00 3.53 R
4401 16346 0.535102 CAACTTCCTCACAGCGGGTT 60.535 55.000 0.00 0.00 0.00 4.11 R
4711 16656 1.356059 TGCATGGTTTACCTGCCCTTA 59.644 47.619 15.78 1.34 38.51 2.69 R
5453 17421 2.047040 GCGTTTCTTTTCAGCTCAAGC 58.953 47.619 0.00 0.00 42.49 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.861138 TGAATCTGCGAACAAATTTTAAAAATG 57.139 25.926 4.44 9.68 0.00 2.32
56 57 8.600449 ATCTGCGAACAAATTTTAAAAATGGA 57.400 26.923 16.75 7.50 0.00 3.41
57 58 8.425577 TCTGCGAACAAATTTTAAAAATGGAA 57.574 26.923 16.75 0.00 0.00 3.53
58 59 9.050601 TCTGCGAACAAATTTTAAAAATGGAAT 57.949 25.926 16.75 6.89 0.00 3.01
80 81 8.706035 GGAATTTGTCTGAATTTGTGATCAAAG 58.294 33.333 0.00 0.00 45.01 2.77
155 157 8.074972 ACATTTTTGCATATGCGAACAAATTTT 58.925 25.926 26.68 12.67 43.56 1.82
157 159 5.527511 TTGCATATGCGAACAAATTTTGG 57.472 34.783 22.21 0.00 45.83 3.28
161 163 5.119898 GCATATGCGAACAAATTTTGGAACA 59.880 36.000 12.82 6.50 34.12 3.18
168 170 5.574830 CGAACAAATTTTGGAACACTGAACA 59.425 36.000 13.42 0.00 39.29 3.18
171 173 7.363205 ACAAATTTTGGAACACTGAACAAAG 57.637 32.000 13.42 0.00 39.29 2.77
173 175 8.091449 ACAAATTTTGGAACACTGAACAAAGTA 58.909 29.630 13.42 0.00 39.29 2.24
180 182 6.039270 TGGAACACTGAACAAAGTATGGAAAG 59.961 38.462 0.00 0.00 0.00 2.62
183 185 5.239525 ACACTGAACAAAGTATGGAAAGAGC 59.760 40.000 0.00 0.00 0.00 4.09
184 186 5.239306 CACTGAACAAAGTATGGAAAGAGCA 59.761 40.000 0.00 0.00 0.00 4.26
192 194 8.806146 ACAAAGTATGGAAAGAGCAAACATTAT 58.194 29.630 0.00 0.00 0.00 1.28
223 225 9.609950 AATTTGTGAACAATGTTTTTGAAACAG 57.390 25.926 11.34 2.77 35.55 3.16
224 226 7.953158 TTGTGAACAATGTTTTTGAAACAGA 57.047 28.000 11.34 0.00 33.18 3.41
225 227 7.953158 TGTGAACAATGTTTTTGAAACAGAA 57.047 28.000 11.34 0.00 33.18 3.02
226 228 8.370493 TGTGAACAATGTTTTTGAAACAGAAA 57.630 26.923 11.34 0.00 33.18 2.52
227 229 8.279103 TGTGAACAATGTTTTTGAAACAGAAAC 58.721 29.630 11.34 9.77 38.42 2.78
228 230 8.279103 GTGAACAATGTTTTTGAAACAGAAACA 58.721 29.630 17.88 17.88 46.77 2.83
322 324 8.870160 AATGAAGAACATTTTCGAATTTGTGA 57.130 26.923 12.58 0.00 45.60 3.58
323 325 8.870160 ATGAAGAACATTTTCGAATTTGTGAA 57.130 26.923 12.58 0.00 36.78 3.18
324 326 8.114359 TGAAGAACATTTTCGAATTTGTGAAC 57.886 30.769 12.58 8.60 36.78 3.18
325 327 7.757173 TGAAGAACATTTTCGAATTTGTGAACA 59.243 29.630 12.58 8.99 36.78 3.18
326 328 8.472683 AAGAACATTTTCGAATTTGTGAACAA 57.527 26.923 12.58 0.00 36.78 2.83
327 329 7.894847 AGAACATTTTCGAATTTGTGAACAAC 58.105 30.769 12.58 3.83 36.78 3.32
328 330 7.543868 AGAACATTTTCGAATTTGTGAACAACA 59.456 29.630 12.58 0.00 36.78 3.33
513 515 4.522722 AAAAACTGTGAAAACCGGTTCA 57.477 36.364 22.53 13.16 35.14 3.18
514 516 3.775661 AAACTGTGAAAACCGGTTCAG 57.224 42.857 24.64 24.64 38.17 3.02
515 517 1.675552 ACTGTGAAAACCGGTTCAGG 58.324 50.000 27.80 17.79 38.17 3.86
516 518 1.210967 ACTGTGAAAACCGGTTCAGGA 59.789 47.619 27.80 11.45 38.17 3.86
517 519 2.294074 CTGTGAAAACCGGTTCAGGAA 58.706 47.619 22.53 6.05 38.17 3.36
518 520 2.018515 TGTGAAAACCGGTTCAGGAAC 58.981 47.619 22.53 14.77 38.17 3.62
541 543 3.380479 TCTAGAAGGTTCACACAACCG 57.620 47.619 0.00 0.00 44.82 4.44
542 544 1.798813 CTAGAAGGTTCACACAACCGC 59.201 52.381 0.00 0.00 44.82 5.68
543 545 0.180406 AGAAGGTTCACACAACCGCT 59.820 50.000 0.00 0.00 44.82 5.52
544 546 0.586802 GAAGGTTCACACAACCGCTC 59.413 55.000 0.00 0.00 44.82 5.03
545 547 0.107410 AAGGTTCACACAACCGCTCA 60.107 50.000 0.00 0.00 44.82 4.26
546 548 0.532862 AGGTTCACACAACCGCTCAG 60.533 55.000 0.00 0.00 44.82 3.35
547 549 3.846586 AGGTTCACACAACCGCTCAGG 62.847 57.143 0.00 0.00 44.82 3.86
548 550 0.531974 GTTCACACAACCGCTCAGGA 60.532 55.000 0.00 0.00 45.00 3.86
549 551 0.179234 TTCACACAACCGCTCAGGAA 59.821 50.000 0.00 0.00 45.00 3.36
550 552 0.531974 TCACACAACCGCTCAGGAAC 60.532 55.000 0.00 0.00 45.00 3.62
551 553 1.227853 ACACAACCGCTCAGGAACC 60.228 57.895 0.00 0.00 45.00 3.62
552 554 1.071471 CACAACCGCTCAGGAACCT 59.929 57.895 0.00 0.00 45.00 3.50
553 555 0.951040 CACAACCGCTCAGGAACCTC 60.951 60.000 0.00 0.00 45.00 3.85
554 556 1.376037 CAACCGCTCAGGAACCTCC 60.376 63.158 0.00 0.00 45.00 4.30
578 580 5.892160 GGAAGGTTCCCAAAACTGTATAC 57.108 43.478 0.00 0.00 41.62 1.47
579 581 5.567430 GGAAGGTTCCCAAAACTGTATACT 58.433 41.667 4.17 0.00 41.62 2.12
580 582 5.414765 GGAAGGTTCCCAAAACTGTATACTG 59.585 44.000 8.11 8.11 41.62 2.74
581 583 5.578157 AGGTTCCCAAAACTGTATACTGT 57.422 39.130 9.42 9.42 28.82 3.55
582 584 6.691255 AGGTTCCCAAAACTGTATACTGTA 57.309 37.500 14.90 0.00 28.82 2.74
583 585 6.708285 AGGTTCCCAAAACTGTATACTGTAG 58.292 40.000 14.90 8.74 28.82 2.74
584 586 6.499350 AGGTTCCCAAAACTGTATACTGTAGA 59.501 38.462 14.90 5.85 28.82 2.59
585 587 6.592994 GGTTCCCAAAACTGTATACTGTAGAC 59.407 42.308 14.90 5.67 0.00 2.59
586 588 6.290294 TCCCAAAACTGTATACTGTAGACC 57.710 41.667 14.90 0.00 0.00 3.85
587 589 6.021030 TCCCAAAACTGTATACTGTAGACCT 58.979 40.000 14.90 0.00 0.00 3.85
588 590 6.154021 TCCCAAAACTGTATACTGTAGACCTC 59.846 42.308 14.90 0.00 0.00 3.85
589 591 6.070995 CCCAAAACTGTATACTGTAGACCTCA 60.071 42.308 14.90 0.00 0.00 3.86
590 592 7.364762 CCCAAAACTGTATACTGTAGACCTCAT 60.365 40.741 14.90 0.00 0.00 2.90
591 593 8.692710 CCAAAACTGTATACTGTAGACCTCATA 58.307 37.037 14.90 0.00 0.00 2.15
596 598 8.861086 ACTGTATACTGTAGACCTCATAATTGG 58.139 37.037 13.19 0.00 0.00 3.16
597 599 8.190326 TGTATACTGTAGACCTCATAATTGGG 57.810 38.462 9.84 0.00 0.00 4.12
598 600 8.008332 TGTATACTGTAGACCTCATAATTGGGA 58.992 37.037 9.84 0.00 0.00 4.37
599 601 9.036980 GTATACTGTAGACCTCATAATTGGGAT 57.963 37.037 1.18 0.00 0.00 3.85
601 603 7.931015 ACTGTAGACCTCATAATTGGGATAA 57.069 36.000 0.00 0.00 0.00 1.75
602 604 8.511748 ACTGTAGACCTCATAATTGGGATAAT 57.488 34.615 0.00 0.00 0.00 1.28
603 605 8.949421 ACTGTAGACCTCATAATTGGGATAATT 58.051 33.333 0.00 0.00 0.00 1.40
604 606 9.224267 CTGTAGACCTCATAATTGGGATAATTG 57.776 37.037 0.00 0.00 0.00 2.32
605 607 8.163408 TGTAGACCTCATAATTGGGATAATTGG 58.837 37.037 0.00 0.00 0.00 3.16
606 608 6.555711 AGACCTCATAATTGGGATAATTGGG 58.444 40.000 0.00 0.00 0.00 4.12
607 609 5.654370 ACCTCATAATTGGGATAATTGGGG 58.346 41.667 0.00 0.00 0.00 4.96
608 610 4.467438 CCTCATAATTGGGATAATTGGGGC 59.533 45.833 0.00 0.00 0.00 5.80
609 611 4.085733 TCATAATTGGGATAATTGGGGCG 58.914 43.478 0.00 0.00 0.00 6.13
610 612 1.715785 AATTGGGATAATTGGGGCGG 58.284 50.000 0.00 0.00 0.00 6.13
611 613 0.831711 ATTGGGATAATTGGGGCGGC 60.832 55.000 0.00 0.00 0.00 6.53
612 614 2.600470 GGGATAATTGGGGCGGCC 60.600 66.667 22.00 22.00 0.00 6.13
613 615 2.600470 GGATAATTGGGGCGGCCC 60.600 66.667 38.99 38.99 44.51 5.80
626 628 2.908015 GGCCCATCTTGGTCGCTA 59.092 61.111 0.00 0.00 35.17 4.26
627 629 1.227674 GGCCCATCTTGGTCGCTAG 60.228 63.158 0.00 0.00 35.17 3.42
628 630 1.522569 GCCCATCTTGGTCGCTAGT 59.477 57.895 0.00 0.00 35.17 2.57
629 631 0.530870 GCCCATCTTGGTCGCTAGTC 60.531 60.000 0.00 0.00 35.17 2.59
630 632 0.105039 CCCATCTTGGTCGCTAGTCC 59.895 60.000 0.00 0.00 35.17 3.85
631 633 0.105039 CCATCTTGGTCGCTAGTCCC 59.895 60.000 0.00 0.00 31.35 4.46
632 634 1.115467 CATCTTGGTCGCTAGTCCCT 58.885 55.000 0.00 0.00 0.00 4.20
633 635 1.067821 CATCTTGGTCGCTAGTCCCTC 59.932 57.143 0.00 0.00 0.00 4.30
634 636 1.030488 TCTTGGTCGCTAGTCCCTCG 61.030 60.000 0.00 0.00 0.00 4.63
635 637 2.005960 CTTGGTCGCTAGTCCCTCGG 62.006 65.000 0.00 0.00 0.00 4.63
636 638 3.217743 GGTCGCTAGTCCCTCGGG 61.218 72.222 0.00 0.00 0.00 5.14
637 639 2.439883 GTCGCTAGTCCCTCGGGT 60.440 66.667 1.18 0.00 36.47 5.28
638 640 2.124403 TCGCTAGTCCCTCGGGTC 60.124 66.667 1.18 0.00 36.47 4.46
639 641 2.124236 CGCTAGTCCCTCGGGTCT 60.124 66.667 6.95 6.95 37.43 3.85
640 642 2.482333 CGCTAGTCCCTCGGGTCTG 61.482 68.421 11.34 3.92 35.43 3.51
641 643 2.128507 GCTAGTCCCTCGGGTCTGG 61.129 68.421 11.34 9.60 35.43 3.86
642 644 2.043248 TAGTCCCTCGGGTCTGGC 60.043 66.667 11.34 0.00 35.43 4.85
645 647 4.689549 TCCCTCGGGTCTGGCGAA 62.690 66.667 1.18 0.00 36.47 4.70
646 648 3.702048 CCCTCGGGTCTGGCGAAA 61.702 66.667 0.00 0.00 0.00 3.46
647 649 2.434359 CCTCGGGTCTGGCGAAAC 60.434 66.667 0.00 0.00 0.00 2.78
648 650 2.342279 CTCGGGTCTGGCGAAACA 59.658 61.111 0.00 0.00 0.00 2.83
649 651 1.738099 CTCGGGTCTGGCGAAACAG 60.738 63.158 0.00 0.00 39.84 3.16
650 652 2.742372 CGGGTCTGGCGAAACAGG 60.742 66.667 0.00 0.00 38.98 4.00
651 653 2.359975 GGGTCTGGCGAAACAGGG 60.360 66.667 0.00 0.00 38.98 4.45
652 654 2.747686 GGTCTGGCGAAACAGGGA 59.252 61.111 0.00 0.00 38.98 4.20
653 655 1.671379 GGTCTGGCGAAACAGGGAC 60.671 63.158 0.00 0.00 38.98 4.46
654 656 1.070786 GTCTGGCGAAACAGGGACA 59.929 57.895 0.00 0.00 38.98 4.02
655 657 0.534203 GTCTGGCGAAACAGGGACAA 60.534 55.000 0.00 0.00 38.98 3.18
656 658 0.534203 TCTGGCGAAACAGGGACAAC 60.534 55.000 0.00 0.00 38.98 3.32
657 659 0.535102 CTGGCGAAACAGGGACAACT 60.535 55.000 0.00 0.00 34.84 3.16
658 660 0.106918 TGGCGAAACAGGGACAACTT 60.107 50.000 0.00 0.00 0.00 2.66
659 661 0.591659 GGCGAAACAGGGACAACTTC 59.408 55.000 0.00 0.00 0.00 3.01
660 662 1.305201 GCGAAACAGGGACAACTTCA 58.695 50.000 0.00 0.00 0.00 3.02
661 663 1.002792 GCGAAACAGGGACAACTTCAC 60.003 52.381 0.00 0.00 0.00 3.18
662 664 1.260561 CGAAACAGGGACAACTTCACG 59.739 52.381 0.00 0.00 29.99 4.35
663 665 1.002792 GAAACAGGGACAACTTCACGC 60.003 52.381 0.00 0.00 29.99 5.34
664 666 0.107410 AACAGGGACAACTTCACGCA 60.107 50.000 0.00 0.00 29.99 5.24
665 667 0.107410 ACAGGGACAACTTCACGCAA 60.107 50.000 0.00 0.00 29.99 4.85
666 668 0.307760 CAGGGACAACTTCACGCAAC 59.692 55.000 0.00 0.00 29.99 4.17
667 669 1.157870 AGGGACAACTTCACGCAACG 61.158 55.000 0.00 0.00 29.99 4.10
668 670 1.433837 GGGACAACTTCACGCAACGT 61.434 55.000 0.00 0.00 42.36 3.99
680 682 1.423845 GCAACGTGCGTCCATTAGG 59.576 57.895 0.00 0.00 31.71 2.69
681 683 1.017177 GCAACGTGCGTCCATTAGGA 61.017 55.000 0.00 0.00 35.86 2.94
682 684 2.535094 GCAACGTGCGTCCATTAGGAA 61.535 52.381 0.00 0.00 38.74 3.36
683 685 3.822177 GCAACGTGCGTCCATTAGGAAT 61.822 50.000 0.00 0.00 38.74 3.01
684 686 5.264448 GCAACGTGCGTCCATTAGGAATT 62.264 47.826 0.00 0.00 38.74 2.17
685 687 6.671045 GCAACGTGCGTCCATTAGGAATTT 62.671 45.833 0.00 0.00 38.74 1.82
689 691 3.694566 GTGCGTCCATTAGGAATTTCCTT 59.305 43.478 22.63 3.49 46.91 3.36
690 692 3.694072 TGCGTCCATTAGGAATTTCCTTG 59.306 43.478 22.63 15.28 46.91 3.61
691 693 3.945285 GCGTCCATTAGGAATTTCCTTGA 59.055 43.478 22.63 12.52 46.91 3.02
692 694 4.201920 GCGTCCATTAGGAATTTCCTTGAC 60.202 45.833 22.63 19.72 46.91 3.18
693 695 4.941263 CGTCCATTAGGAATTTCCTTGACA 59.059 41.667 22.63 2.35 46.91 3.58
694 696 5.414454 CGTCCATTAGGAATTTCCTTGACAA 59.586 40.000 22.63 11.49 46.91 3.18
695 697 6.621613 GTCCATTAGGAATTTCCTTGACAAC 58.378 40.000 22.63 12.25 46.91 3.32
696 698 6.208599 GTCCATTAGGAATTTCCTTGACAACA 59.791 38.462 22.63 0.46 46.91 3.33
697 699 6.208599 TCCATTAGGAATTTCCTTGACAACAC 59.791 38.462 22.63 0.00 46.91 3.32
698 700 6.209391 CCATTAGGAATTTCCTTGACAACACT 59.791 38.462 22.63 0.00 46.91 3.55
699 701 6.633500 TTAGGAATTTCCTTGACAACACTG 57.367 37.500 22.63 0.00 46.91 3.66
700 702 3.319122 AGGAATTTCCTTGACAACACTGC 59.681 43.478 12.37 0.00 46.91 4.40
701 703 3.319122 GGAATTTCCTTGACAACACTGCT 59.681 43.478 8.25 0.00 32.53 4.24
702 704 3.996150 ATTTCCTTGACAACACTGCTG 57.004 42.857 0.00 0.00 0.00 4.41
703 705 1.024271 TTCCTTGACAACACTGCTGC 58.976 50.000 0.00 0.00 0.00 5.25
704 706 1.159713 TCCTTGACAACACTGCTGCG 61.160 55.000 0.00 0.00 0.00 5.18
705 707 1.439353 CCTTGACAACACTGCTGCGT 61.439 55.000 0.00 0.00 0.00 5.24
706 708 1.217001 CTTGACAACACTGCTGCGTA 58.783 50.000 0.00 0.00 0.00 4.42
707 709 1.193203 CTTGACAACACTGCTGCGTAG 59.807 52.381 0.00 0.00 0.00 3.51
741 743 2.974698 GGATTGATCCCTGCGCGG 60.975 66.667 9.96 9.96 41.20 6.46
742 744 3.654020 GATTGATCCCTGCGCGGC 61.654 66.667 11.81 0.00 0.00 6.53
756 758 2.265739 CGGCCAGTTAGCTGCAGA 59.734 61.111 20.43 0.00 41.26 4.26
757 759 1.153289 CGGCCAGTTAGCTGCAGAT 60.153 57.895 20.43 15.46 41.26 2.90
758 760 1.434622 CGGCCAGTTAGCTGCAGATG 61.435 60.000 20.43 7.09 41.26 2.90
759 761 1.722636 GGCCAGTTAGCTGCAGATGC 61.723 60.000 20.43 10.57 41.26 3.91
760 762 0.747283 GCCAGTTAGCTGCAGATGCT 60.747 55.000 20.43 11.43 41.26 3.79
761 763 1.747709 CCAGTTAGCTGCAGATGCTT 58.252 50.000 20.43 0.00 41.26 3.91
762 764 1.669779 CCAGTTAGCTGCAGATGCTTC 59.330 52.381 20.43 5.63 41.26 3.86
763 765 2.353323 CAGTTAGCTGCAGATGCTTCA 58.647 47.619 20.43 0.00 41.46 3.02
764 766 2.352034 CAGTTAGCTGCAGATGCTTCAG 59.648 50.000 20.43 0.00 41.46 3.02
782 784 7.253302 GCTTCAGCAATAGAAACTTTTAACG 57.747 36.000 0.00 0.00 41.59 3.18
783 785 6.856426 GCTTCAGCAATAGAAACTTTTAACGT 59.144 34.615 0.00 0.00 41.59 3.99
784 786 7.059602 GCTTCAGCAATAGAAACTTTTAACGTC 59.940 37.037 0.00 0.00 41.59 4.34
785 787 6.586751 TCAGCAATAGAAACTTTTAACGTCG 58.413 36.000 0.00 0.00 0.00 5.12
786 788 5.280678 CAGCAATAGAAACTTTTAACGTCGC 59.719 40.000 0.00 0.00 0.00 5.19
787 789 5.178809 AGCAATAGAAACTTTTAACGTCGCT 59.821 36.000 0.00 0.00 0.00 4.93
788 790 5.849604 GCAATAGAAACTTTTAACGTCGCTT 59.150 36.000 0.00 0.00 0.00 4.68
789 791 7.011189 GCAATAGAAACTTTTAACGTCGCTTA 58.989 34.615 0.00 0.00 0.00 3.09
790 792 7.531534 GCAATAGAAACTTTTAACGTCGCTTAA 59.468 33.333 0.00 0.00 0.00 1.85
791 793 9.537848 CAATAGAAACTTTTAACGTCGCTTAAT 57.462 29.630 0.00 0.00 0.00 1.40
792 794 9.537848 AATAGAAACTTTTAACGTCGCTTAATG 57.462 29.630 0.00 0.00 0.00 1.90
793 795 5.849604 AGAAACTTTTAACGTCGCTTAATGC 59.150 36.000 0.00 0.00 38.57 3.56
808 810 6.083925 GCTTAATGCGATAAATAGTCTCCG 57.916 41.667 0.00 0.00 0.00 4.63
809 811 5.444745 GCTTAATGCGATAAATAGTCTCCGC 60.445 44.000 0.00 0.00 42.52 5.54
810 812 2.046283 TGCGATAAATAGTCTCCGCG 57.954 50.000 0.00 0.00 44.76 6.46
811 813 1.335597 TGCGATAAATAGTCTCCGCGG 60.336 52.381 22.12 22.12 44.76 6.46
812 814 1.978542 CGATAAATAGTCTCCGCGGG 58.021 55.000 27.83 16.54 0.00 6.13
813 815 1.402456 CGATAAATAGTCTCCGCGGGG 60.402 57.143 27.83 25.23 0.00 5.73
814 816 1.891150 GATAAATAGTCTCCGCGGGGA 59.109 52.381 27.50 27.50 41.08 4.81
815 817 1.779221 TAAATAGTCTCCGCGGGGAA 58.221 50.000 33.24 17.17 43.27 3.97
816 818 0.464452 AAATAGTCTCCGCGGGGAAG 59.536 55.000 33.24 18.52 43.27 3.46
817 819 1.400530 AATAGTCTCCGCGGGGAAGG 61.401 60.000 33.24 12.70 43.27 3.46
823 825 4.875713 CCGCGGGGAAGGGGATTG 62.876 72.222 20.10 0.00 45.92 2.67
824 826 3.792736 CGCGGGGAAGGGGATTGA 61.793 66.667 0.00 0.00 0.00 2.57
825 827 2.124278 GCGGGGAAGGGGATTGAC 60.124 66.667 0.00 0.00 0.00 3.18
826 828 2.595655 CGGGGAAGGGGATTGACC 59.404 66.667 0.00 0.00 38.08 4.02
827 829 2.595655 GGGGAAGGGGATTGACCG 59.404 66.667 0.00 0.00 40.11 4.79
851 853 2.191375 CATCTGGCCCACGATGCT 59.809 61.111 12.14 0.00 31.67 3.79
852 854 2.184830 CATCTGGCCCACGATGCTG 61.185 63.158 12.14 0.00 31.67 4.41
853 855 2.673200 ATCTGGCCCACGATGCTGT 61.673 57.895 0.00 0.00 0.00 4.40
854 856 1.337384 ATCTGGCCCACGATGCTGTA 61.337 55.000 0.00 0.00 0.00 2.74
855 857 1.815421 CTGGCCCACGATGCTGTAC 60.815 63.158 0.00 0.00 0.00 2.90
856 858 2.513897 GGCCCACGATGCTGTACC 60.514 66.667 0.00 0.00 0.00 3.34
857 859 2.890474 GCCCACGATGCTGTACCG 60.890 66.667 0.00 0.00 0.00 4.02
858 860 2.889617 CCCACGATGCTGTACCGA 59.110 61.111 0.00 0.00 0.00 4.69
859 861 1.216977 CCCACGATGCTGTACCGAA 59.783 57.895 0.00 0.00 0.00 4.30
860 862 0.390603 CCCACGATGCTGTACCGAAA 60.391 55.000 0.00 0.00 0.00 3.46
861 863 1.434555 CCACGATGCTGTACCGAAAA 58.565 50.000 0.00 0.00 0.00 2.29
862 864 1.393539 CCACGATGCTGTACCGAAAAG 59.606 52.381 0.00 0.00 0.00 2.27
863 865 1.076332 ACGATGCTGTACCGAAAAGC 58.924 50.000 0.00 0.00 37.46 3.51
864 866 0.373716 CGATGCTGTACCGAAAAGCC 59.626 55.000 0.18 0.00 36.05 4.35
865 867 0.733150 GATGCTGTACCGAAAAGCCC 59.267 55.000 0.18 0.00 36.05 5.19
866 868 0.037590 ATGCTGTACCGAAAAGCCCA 59.962 50.000 0.18 0.00 36.05 5.36
867 869 0.605319 TGCTGTACCGAAAAGCCCAG 60.605 55.000 0.18 0.00 36.05 4.45
868 870 0.321298 GCTGTACCGAAAAGCCCAGA 60.321 55.000 0.00 0.00 0.00 3.86
873 875 1.770294 ACCGAAAAGCCCAGAACAAA 58.230 45.000 0.00 0.00 0.00 2.83
874 876 1.407618 ACCGAAAAGCCCAGAACAAAC 59.592 47.619 0.00 0.00 0.00 2.93
886 888 3.278574 CAGAACAAACAACACCTGGAGA 58.721 45.455 0.00 0.00 0.00 3.71
890 892 0.834612 AAACAACACCTGGAGACGGA 59.165 50.000 0.00 0.00 39.98 4.69
901 903 4.699522 AGACGGAAAGCCCACGCC 62.700 66.667 0.00 0.00 34.57 5.68
1022 1041 4.814294 GTTCGCCGCACGGAGGAT 62.814 66.667 14.43 0.00 43.89 3.24
1053 11327 1.484444 GCTTCTCCCACCACCTCACT 61.484 60.000 0.00 0.00 0.00 3.41
1457 11743 1.079503 CTCAACTGGTAAGCTTCGCC 58.920 55.000 0.00 7.69 0.00 5.54
1586 11872 1.066752 CCGCGGTGATACCATTCGA 59.933 57.895 19.50 0.00 38.47 3.71
1599 11885 2.213499 CCATTCGAGGTTAGCCATCAC 58.787 52.381 0.00 0.00 37.19 3.06
1659 11945 3.411415 AATTCAGCGTGCATTTCTAGC 57.589 42.857 0.00 0.00 0.00 3.42
1793 12090 3.287222 TGTAAGGTTGCTTCAAGTTGCT 58.713 40.909 0.00 0.00 0.00 3.91
1794 12091 2.877043 AAGGTTGCTTCAAGTTGCTG 57.123 45.000 0.00 0.00 0.00 4.41
1795 12092 2.057137 AGGTTGCTTCAAGTTGCTGA 57.943 45.000 0.00 0.00 0.00 4.26
1796 12093 2.378038 AGGTTGCTTCAAGTTGCTGAA 58.622 42.857 0.00 0.00 34.22 3.02
1797 12094 2.099756 AGGTTGCTTCAAGTTGCTGAAC 59.900 45.455 0.00 0.00 32.00 3.18
1798 12095 2.099756 GGTTGCTTCAAGTTGCTGAACT 59.900 45.455 0.00 0.00 44.79 3.01
1799 12096 3.111098 GTTGCTTCAAGTTGCTGAACTG 58.889 45.455 0.00 0.00 41.87 3.16
1800 12097 2.368439 TGCTTCAAGTTGCTGAACTGT 58.632 42.857 0.00 0.00 41.87 3.55
1801 12098 2.097954 TGCTTCAAGTTGCTGAACTGTG 59.902 45.455 0.00 0.00 41.87 3.66
1802 12099 2.724349 CTTCAAGTTGCTGAACTGTGC 58.276 47.619 0.00 0.00 41.87 4.57
1808 12105 1.727511 TTGCTGAACTGTGCTGCACC 61.728 55.000 28.17 14.20 39.42 5.01
1853 12161 4.036852 GCCAGAAAATAGCCATGGAACTAC 59.963 45.833 18.40 0.00 32.55 2.73
1975 12285 2.282783 GGGGGAACATGCAACCACC 61.283 63.158 8.58 8.58 40.19 4.61
2025 12343 4.400529 TGAGCAGTTGAGTTGTTGTAGA 57.599 40.909 0.00 0.00 0.00 2.59
2060 12378 6.484643 AGGCTGTTAATCTACATGCAATACAG 59.515 38.462 0.00 0.00 34.97 2.74
2225 12543 8.712285 TCTTGAAACCTTATATCTTTACCACG 57.288 34.615 0.00 0.00 0.00 4.94
2464 14247 0.890683 CAGCCCGGAAGCTTGAAATT 59.109 50.000 2.10 0.00 42.61 1.82
2468 14251 4.338118 CAGCCCGGAAGCTTGAAATTATTA 59.662 41.667 2.10 0.00 42.61 0.98
2505 14288 9.195411 GCTTCATTGAAAAATGATTACAAGACA 57.805 29.630 0.01 0.00 38.79 3.41
2836 14679 1.335324 GCGATGGATGCCATTAAGCAC 60.335 52.381 13.62 0.00 45.26 4.40
3131 14974 9.832445 GATGTCTCTTTCCTGGTTAATGTATAA 57.168 33.333 0.00 0.00 0.00 0.98
3579 15427 4.974645 TGGTTTACTGATCTGACAACCT 57.025 40.909 24.29 2.73 0.00 3.50
3622 15470 4.836175 TCCTGTGTTAACATCACTGACCTA 59.164 41.667 12.26 0.00 37.07 3.08
3631 15479 4.033709 ACATCACTGACCTACTTGGCTAT 58.966 43.478 0.00 0.00 40.22 2.97
3723 15571 0.035458 GGTGTGCCACTGCTTCTAGT 59.965 55.000 0.00 0.00 38.71 2.57
3774 15622 6.777580 AGGGGTGATCATTTTCCATATACAAC 59.222 38.462 0.00 0.00 0.00 3.32
3820 15669 2.355756 CTGTTCCAACCATATTGCCTCG 59.644 50.000 0.00 0.00 0.00 4.63
3961 15828 5.191727 ACATCCAGAATATCAAACCACCA 57.808 39.130 0.00 0.00 0.00 4.17
4062 15952 1.618837 TCAGCTCGGCCATCCTTATAC 59.381 52.381 2.24 0.00 0.00 1.47
4064 15954 2.037772 CAGCTCGGCCATCCTTATACTT 59.962 50.000 2.24 0.00 0.00 2.24
4085 15975 6.917533 ACTTCCAGTAAAATGAAGATGCTTG 58.082 36.000 5.57 0.00 39.01 4.01
4106 15996 3.906218 TGATAGAGGAATGGGAGTCATGG 59.094 47.826 0.00 0.00 35.99 3.66
4263 16195 1.813178 TCACGGCAAACTTGTTCACAA 59.187 42.857 0.00 0.00 0.00 3.33
4272 16204 7.008266 CGGCAAACTTGTTCACAATTGTATATC 59.992 37.037 11.53 2.85 35.02 1.63
4273 16205 7.812191 GGCAAACTTGTTCACAATTGTATATCA 59.188 33.333 11.53 5.40 35.02 2.15
4338 16270 2.549754 CGATTGCTGTAAGGCATTAGGG 59.450 50.000 0.00 0.00 42.09 3.53
4381 16313 9.836864 ATAGCTCATAACATGTGATACTTTGAA 57.163 29.630 0.00 0.00 29.05 2.69
4401 16346 9.340695 CTTTGAATTTTTATCAGTTATGCGTCA 57.659 29.630 0.00 0.00 0.00 4.35
4434 16379 7.340743 TGTGAGGAAGTTGTTTAATTTTCCTGA 59.659 33.333 9.53 0.00 0.00 3.86
4530 16475 2.821969 CAAAGCCACCTTTAGCACTCAT 59.178 45.455 0.00 0.00 39.20 2.90
4553 16498 4.042809 TGGAATTGGAGGAAGTAAGAAGCA 59.957 41.667 0.00 0.00 0.00 3.91
4711 16656 4.443598 GGGAAATCTAGAGGCAAATCTCGT 60.444 45.833 0.00 0.00 38.71 4.18
4824 16770 5.188434 TCCTGACATGCTTCTAAGATTTGG 58.812 41.667 0.00 0.00 0.00 3.28
4841 16787 2.564721 GGTTTTGCGCAAGGAGGCT 61.565 57.895 23.68 0.00 40.51 4.58
5234 17201 4.051932 GGTCACTCCCTCCGGAAT 57.948 61.111 5.23 0.00 37.86 3.01
5235 17202 3.218974 GGTCACTCCCTCCGGAATA 57.781 57.895 5.23 0.00 37.86 1.75
5236 17203 1.492764 GGTCACTCCCTCCGGAATAA 58.507 55.000 5.23 0.00 37.86 1.40
5237 17204 1.138464 GGTCACTCCCTCCGGAATAAC 59.862 57.143 5.23 0.00 37.86 1.89
5238 17205 1.108776 TCACTCCCTCCGGAATAACG 58.891 55.000 5.23 0.00 37.86 3.18
5453 17421 0.788391 GTTACAGAAGCAACCGACGG 59.212 55.000 13.61 13.61 0.00 4.79
5551 17519 0.319555 TCTCGTTGCTGGCTACACAC 60.320 55.000 7.76 0.00 0.00 3.82
5552 17520 0.599991 CTCGTTGCTGGCTACACACA 60.600 55.000 7.76 0.00 0.00 3.72
5553 17521 0.599991 TCGTTGCTGGCTACACACAG 60.600 55.000 7.76 0.00 37.76 3.66
5625 17601 1.745489 GCCGTTTTCCAGCTCCGAT 60.745 57.895 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.662545 AATTCCATTTTTAAAATTTGTTCGCAG 57.337 25.926 0.55 0.00 0.00 5.18
53 54 7.287512 TGATCACAAATTCAGACAAATTCCA 57.712 32.000 0.00 0.00 0.00 3.53
54 55 8.592105 TTTGATCACAAATTCAGACAAATTCC 57.408 30.769 0.00 0.00 40.47 3.01
56 57 9.252962 GACTTTGATCACAAATTCAGACAAATT 57.747 29.630 0.00 0.00 43.64 1.82
57 58 8.636213 AGACTTTGATCACAAATTCAGACAAAT 58.364 29.630 0.00 0.00 43.39 2.32
58 59 7.916977 CAGACTTTGATCACAAATTCAGACAAA 59.083 33.333 0.00 0.00 43.39 2.83
61 62 7.194607 TCAGACTTTGATCACAAATTCAGAC 57.805 36.000 0.00 0.00 43.39 3.51
112 114 9.566530 GCAAAAATGTCCACTTTTTACAAAAAT 57.433 25.926 0.62 0.00 37.27 1.82
119 121 7.148672 CGCATATGCAAAAATGTCCACTTTTTA 60.149 33.333 26.52 0.00 42.21 1.52
155 157 5.042463 TCCATACTTTGTTCAGTGTTCCA 57.958 39.130 0.00 0.00 0.00 3.53
157 159 7.259290 TCTTTCCATACTTTGTTCAGTGTTC 57.741 36.000 0.00 0.00 0.00 3.18
161 163 5.376625 TGCTCTTTCCATACTTTGTTCAGT 58.623 37.500 0.00 0.00 0.00 3.41
171 173 8.986477 ACAAATAATGTTTGCTCTTTCCATAC 57.014 30.769 2.32 0.00 40.06 2.39
201 203 7.953158 TTCTGTTTCAAAAACATTGTTCACA 57.047 28.000 1.83 0.00 0.00 3.58
202 204 8.279103 TGTTTCTGTTTCAAAAACATTGTTCAC 58.721 29.630 1.83 0.00 37.82 3.18
203 205 8.370493 TGTTTCTGTTTCAAAAACATTGTTCA 57.630 26.923 1.83 0.00 37.82 3.18
298 300 8.755018 GTTCACAAATTCGAAAATGTTCTTCAT 58.245 29.630 14.40 0.00 38.57 2.57
299 301 7.757173 TGTTCACAAATTCGAAAATGTTCTTCA 59.243 29.630 14.40 9.81 0.00 3.02
300 302 8.114359 TGTTCACAAATTCGAAAATGTTCTTC 57.886 30.769 14.40 8.00 0.00 2.87
301 303 8.379902 GTTGTTCACAAATTCGAAAATGTTCTT 58.620 29.630 14.40 0.00 37.63 2.52
302 304 7.543868 TGTTGTTCACAAATTCGAAAATGTTCT 59.456 29.630 14.40 0.00 37.63 3.01
303 305 7.670916 TGTTGTTCACAAATTCGAAAATGTTC 58.329 30.769 14.40 9.80 37.63 3.18
304 306 7.588143 TGTTGTTCACAAATTCGAAAATGTT 57.412 28.000 14.40 0.00 37.63 2.71
305 307 7.588143 TTGTTGTTCACAAATTCGAAAATGT 57.412 28.000 0.00 7.68 42.76 2.71
338 340 9.337396 TGTTCAGAAGTTAAGAAAATGCTCTTA 57.663 29.630 0.00 0.00 36.95 2.10
339 341 8.225603 TGTTCAGAAGTTAAGAAAATGCTCTT 57.774 30.769 0.00 0.00 39.09 2.85
340 342 7.807977 TGTTCAGAAGTTAAGAAAATGCTCT 57.192 32.000 0.00 0.00 0.00 4.09
341 343 9.468532 AAATGTTCAGAAGTTAAGAAAATGCTC 57.531 29.630 0.00 0.00 0.00 4.26
342 344 9.822185 AAAATGTTCAGAAGTTAAGAAAATGCT 57.178 25.926 0.00 0.00 0.00 3.79
343 345 9.853921 CAAAATGTTCAGAAGTTAAGAAAATGC 57.146 29.630 0.00 0.00 0.00 3.56
492 494 4.490743 CTGAACCGGTTTTCACAGTTTTT 58.509 39.130 23.22 0.00 32.02 1.94
493 495 3.119280 CCTGAACCGGTTTTCACAGTTTT 60.119 43.478 23.22 0.00 32.02 2.43
494 496 2.425668 CCTGAACCGGTTTTCACAGTTT 59.574 45.455 23.22 0.00 32.02 2.66
495 497 2.021457 CCTGAACCGGTTTTCACAGTT 58.979 47.619 23.22 0.00 32.02 3.16
496 498 1.210967 TCCTGAACCGGTTTTCACAGT 59.789 47.619 23.22 0.00 32.02 3.55
497 499 1.961793 TCCTGAACCGGTTTTCACAG 58.038 50.000 23.22 21.99 32.02 3.66
498 500 2.018515 GTTCCTGAACCGGTTTTCACA 58.981 47.619 23.22 13.68 35.36 3.58
499 501 2.768833 GTTCCTGAACCGGTTTTCAC 57.231 50.000 23.22 9.18 35.36 3.18
519 521 3.741344 CGGTTGTGTGAACCTTCTAGAAG 59.259 47.826 23.31 23.31 38.15 2.85
520 522 3.724374 CGGTTGTGTGAACCTTCTAGAA 58.276 45.455 4.81 4.81 38.15 2.10
521 523 2.547218 GCGGTTGTGTGAACCTTCTAGA 60.547 50.000 0.00 0.00 38.15 2.43
522 524 1.798813 GCGGTTGTGTGAACCTTCTAG 59.201 52.381 0.00 0.00 38.15 2.43
523 525 1.414919 AGCGGTTGTGTGAACCTTCTA 59.585 47.619 0.00 0.00 38.15 2.10
524 526 0.180406 AGCGGTTGTGTGAACCTTCT 59.820 50.000 0.00 0.00 38.15 2.85
525 527 0.586802 GAGCGGTTGTGTGAACCTTC 59.413 55.000 0.00 0.00 38.15 3.46
526 528 0.107410 TGAGCGGTTGTGTGAACCTT 60.107 50.000 0.00 0.00 38.15 3.50
527 529 0.532862 CTGAGCGGTTGTGTGAACCT 60.533 55.000 0.00 0.00 38.15 3.50
528 530 1.507141 CCTGAGCGGTTGTGTGAACC 61.507 60.000 0.00 0.00 36.96 3.62
529 531 0.531974 TCCTGAGCGGTTGTGTGAAC 60.532 55.000 0.00 0.00 0.00 3.18
530 532 0.179234 TTCCTGAGCGGTTGTGTGAA 59.821 50.000 0.00 0.00 0.00 3.18
531 533 0.531974 GTTCCTGAGCGGTTGTGTGA 60.532 55.000 0.00 0.00 0.00 3.58
532 534 1.507141 GGTTCCTGAGCGGTTGTGTG 61.507 60.000 0.00 0.00 0.00 3.82
533 535 1.227853 GGTTCCTGAGCGGTTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
534 536 0.951040 GAGGTTCCTGAGCGGTTGTG 60.951 60.000 0.00 0.00 0.00 3.33
535 537 1.371558 GAGGTTCCTGAGCGGTTGT 59.628 57.895 0.00 0.00 0.00 3.32
536 538 1.376037 GGAGGTTCCTGAGCGGTTG 60.376 63.158 0.00 0.00 32.53 3.77
537 539 3.069778 GGAGGTTCCTGAGCGGTT 58.930 61.111 0.00 0.00 32.53 4.44
561 563 6.592994 GGTCTACAGTATACAGTTTTGGGAAC 59.407 42.308 6.21 0.00 0.00 3.62
562 564 6.499350 AGGTCTACAGTATACAGTTTTGGGAA 59.501 38.462 6.21 0.00 0.00 3.97
563 565 6.021030 AGGTCTACAGTATACAGTTTTGGGA 58.979 40.000 6.21 0.00 0.00 4.37
564 566 6.070995 TGAGGTCTACAGTATACAGTTTTGGG 60.071 42.308 6.21 0.00 0.00 4.12
565 567 6.931838 TGAGGTCTACAGTATACAGTTTTGG 58.068 40.000 6.21 0.00 0.00 3.28
570 572 8.861086 CCAATTATGAGGTCTACAGTATACAGT 58.139 37.037 5.50 5.86 0.00 3.55
571 573 8.307483 CCCAATTATGAGGTCTACAGTATACAG 58.693 40.741 5.50 0.00 0.00 2.74
572 574 8.008332 TCCCAATTATGAGGTCTACAGTATACA 58.992 37.037 5.50 0.00 0.00 2.29
573 575 8.418597 TCCCAATTATGAGGTCTACAGTATAC 57.581 38.462 0.00 0.00 0.00 1.47
575 577 9.615660 TTATCCCAATTATGAGGTCTACAGTAT 57.384 33.333 0.00 0.00 0.00 2.12
576 578 9.615660 ATTATCCCAATTATGAGGTCTACAGTA 57.384 33.333 0.00 0.00 0.00 2.74
577 579 7.931015 TTATCCCAATTATGAGGTCTACAGT 57.069 36.000 0.00 0.00 0.00 3.55
578 580 9.224267 CAATTATCCCAATTATGAGGTCTACAG 57.776 37.037 0.00 0.00 0.00 2.74
579 581 8.163408 CCAATTATCCCAATTATGAGGTCTACA 58.837 37.037 0.00 0.00 0.00 2.74
580 582 7.611855 CCCAATTATCCCAATTATGAGGTCTAC 59.388 40.741 0.00 0.00 0.00 2.59
581 583 7.257382 CCCCAATTATCCCAATTATGAGGTCTA 60.257 40.741 0.00 0.00 0.00 2.59
582 584 6.469239 CCCCAATTATCCCAATTATGAGGTCT 60.469 42.308 0.00 0.00 0.00 3.85
583 585 5.716703 CCCCAATTATCCCAATTATGAGGTC 59.283 44.000 0.00 0.00 0.00 3.85
584 586 5.654370 CCCCAATTATCCCAATTATGAGGT 58.346 41.667 0.00 0.00 0.00 3.85
585 587 4.467438 GCCCCAATTATCCCAATTATGAGG 59.533 45.833 0.00 0.00 0.00 3.86
586 588 4.158394 CGCCCCAATTATCCCAATTATGAG 59.842 45.833 0.00 0.00 0.00 2.90
587 589 4.085733 CGCCCCAATTATCCCAATTATGA 58.914 43.478 0.00 0.00 0.00 2.15
588 590 3.195396 CCGCCCCAATTATCCCAATTATG 59.805 47.826 0.00 0.00 0.00 1.90
589 591 3.440127 CCGCCCCAATTATCCCAATTAT 58.560 45.455 0.00 0.00 0.00 1.28
590 592 2.883026 CCGCCCCAATTATCCCAATTA 58.117 47.619 0.00 0.00 0.00 1.40
591 593 1.715785 CCGCCCCAATTATCCCAATT 58.284 50.000 0.00 0.00 0.00 2.32
592 594 0.831711 GCCGCCCCAATTATCCCAAT 60.832 55.000 0.00 0.00 0.00 3.16
593 595 1.456705 GCCGCCCCAATTATCCCAA 60.457 57.895 0.00 0.00 0.00 4.12
594 596 2.197324 GCCGCCCCAATTATCCCA 59.803 61.111 0.00 0.00 0.00 4.37
595 597 2.600470 GGCCGCCCCAATTATCCC 60.600 66.667 0.00 0.00 0.00 3.85
608 610 2.978452 CTAGCGACCAAGATGGGCCG 62.978 65.000 0.00 5.38 44.91 6.13
609 611 1.227674 CTAGCGACCAAGATGGGCC 60.228 63.158 0.00 0.00 44.91 5.80
610 612 0.530870 GACTAGCGACCAAGATGGGC 60.531 60.000 0.87 0.00 44.03 5.36
611 613 0.105039 GGACTAGCGACCAAGATGGG 59.895 60.000 0.87 0.00 43.37 4.00
612 614 0.105039 GGGACTAGCGACCAAGATGG 59.895 60.000 0.00 0.00 45.02 3.51
613 615 1.067821 GAGGGACTAGCGACCAAGATG 59.932 57.143 0.00 0.00 41.55 2.90
614 616 1.404843 GAGGGACTAGCGACCAAGAT 58.595 55.000 0.00 0.00 41.55 2.40
615 617 1.030488 CGAGGGACTAGCGACCAAGA 61.030 60.000 0.00 0.00 41.55 3.02
616 618 1.433879 CGAGGGACTAGCGACCAAG 59.566 63.158 0.00 0.00 41.55 3.61
617 619 2.050350 CCGAGGGACTAGCGACCAA 61.050 63.158 0.00 0.00 41.55 3.67
618 620 2.439701 CCGAGGGACTAGCGACCA 60.440 66.667 0.00 0.00 41.55 4.02
619 621 3.217743 CCCGAGGGACTAGCGACC 61.218 72.222 0.84 0.00 41.55 4.79
620 622 2.439883 ACCCGAGGGACTAGCGAC 60.440 66.667 16.26 0.00 41.55 5.19
621 623 2.124403 GACCCGAGGGACTAGCGA 60.124 66.667 16.26 0.00 41.55 4.93
622 624 2.124236 AGACCCGAGGGACTAGCG 60.124 66.667 16.26 0.00 41.55 4.26
623 625 2.128507 CCAGACCCGAGGGACTAGC 61.129 68.421 16.26 0.00 41.55 3.42
624 626 2.128507 GCCAGACCCGAGGGACTAG 61.129 68.421 16.26 8.43 41.55 2.57
625 627 2.043248 GCCAGACCCGAGGGACTA 60.043 66.667 16.26 0.00 41.55 2.59
628 630 4.689549 TTCGCCAGACCCGAGGGA 62.690 66.667 16.26 0.00 38.96 4.20
629 631 3.702048 TTTCGCCAGACCCGAGGG 61.702 66.667 6.63 6.63 42.03 4.30
630 632 2.434359 GTTTCGCCAGACCCGAGG 60.434 66.667 0.00 0.00 35.96 4.63
631 633 1.738099 CTGTTTCGCCAGACCCGAG 60.738 63.158 0.00 0.00 35.96 4.63
632 634 2.342279 CTGTTTCGCCAGACCCGA 59.658 61.111 0.00 0.00 34.23 5.14
633 635 2.742372 CCTGTTTCGCCAGACCCG 60.742 66.667 0.00 0.00 34.23 5.28
634 636 2.359975 CCCTGTTTCGCCAGACCC 60.360 66.667 0.00 0.00 34.23 4.46
635 637 1.671379 GTCCCTGTTTCGCCAGACC 60.671 63.158 0.00 0.00 34.23 3.85
636 638 0.534203 TTGTCCCTGTTTCGCCAGAC 60.534 55.000 0.00 0.00 34.23 3.51
637 639 0.534203 GTTGTCCCTGTTTCGCCAGA 60.534 55.000 0.00 0.00 34.23 3.86
638 640 0.535102 AGTTGTCCCTGTTTCGCCAG 60.535 55.000 0.00 0.00 0.00 4.85
639 641 0.106918 AAGTTGTCCCTGTTTCGCCA 60.107 50.000 0.00 0.00 0.00 5.69
640 642 0.591659 GAAGTTGTCCCTGTTTCGCC 59.408 55.000 0.00 0.00 0.00 5.54
641 643 1.002792 GTGAAGTTGTCCCTGTTTCGC 60.003 52.381 0.00 0.00 0.00 4.70
642 644 1.260561 CGTGAAGTTGTCCCTGTTTCG 59.739 52.381 0.00 0.00 0.00 3.46
643 645 1.002792 GCGTGAAGTTGTCCCTGTTTC 60.003 52.381 0.00 0.00 0.00 2.78
644 646 1.021968 GCGTGAAGTTGTCCCTGTTT 58.978 50.000 0.00 0.00 0.00 2.83
645 647 0.107410 TGCGTGAAGTTGTCCCTGTT 60.107 50.000 0.00 0.00 0.00 3.16
646 648 0.107410 TTGCGTGAAGTTGTCCCTGT 60.107 50.000 0.00 0.00 0.00 4.00
647 649 0.307760 GTTGCGTGAAGTTGTCCCTG 59.692 55.000 0.00 0.00 0.00 4.45
648 650 1.157870 CGTTGCGTGAAGTTGTCCCT 61.158 55.000 0.00 0.00 0.00 4.20
649 651 1.278637 CGTTGCGTGAAGTTGTCCC 59.721 57.895 0.00 0.00 0.00 4.46
650 652 2.011453 ACGTTGCGTGAAGTTGTCC 58.989 52.632 0.00 0.00 39.18 4.02
662 664 1.017177 TCCTAATGGACGCACGTTGC 61.017 55.000 0.00 0.00 37.46 4.17
663 665 1.434555 TTCCTAATGGACGCACGTTG 58.565 50.000 0.00 0.00 43.06 4.10
664 666 2.396590 ATTCCTAATGGACGCACGTT 57.603 45.000 0.00 0.00 43.06 3.99
665 667 2.396590 AATTCCTAATGGACGCACGT 57.603 45.000 0.00 0.00 43.06 4.49
666 668 2.031683 GGAAATTCCTAATGGACGCACG 59.968 50.000 4.46 0.00 43.06 5.34
667 669 3.692791 GGAAATTCCTAATGGACGCAC 57.307 47.619 4.46 0.00 43.06 5.34
679 681 3.319122 AGCAGTGTTGTCAAGGAAATTCC 59.681 43.478 3.29 3.29 36.58 3.01
680 682 4.293415 CAGCAGTGTTGTCAAGGAAATTC 58.707 43.478 0.00 0.00 0.00 2.17
681 683 3.491447 GCAGCAGTGTTGTCAAGGAAATT 60.491 43.478 8.86 0.00 0.00 1.82
682 684 2.035066 GCAGCAGTGTTGTCAAGGAAAT 59.965 45.455 8.86 0.00 0.00 2.17
683 685 1.405105 GCAGCAGTGTTGTCAAGGAAA 59.595 47.619 8.86 0.00 0.00 3.13
684 686 1.024271 GCAGCAGTGTTGTCAAGGAA 58.976 50.000 8.86 0.00 0.00 3.36
685 687 1.159713 CGCAGCAGTGTTGTCAAGGA 61.160 55.000 8.86 0.00 0.00 3.36
686 688 1.280746 CGCAGCAGTGTTGTCAAGG 59.719 57.895 8.86 0.00 0.00 3.61
687 689 1.193203 CTACGCAGCAGTGTTGTCAAG 59.807 52.381 8.86 0.30 39.61 3.02
688 690 1.217001 CTACGCAGCAGTGTTGTCAA 58.783 50.000 8.86 0.00 39.61 3.18
689 691 2.899153 CTACGCAGCAGTGTTGTCA 58.101 52.632 8.86 0.00 39.61 3.58
699 701 1.568612 TCTGCTTGTTGCTACGCAGC 61.569 55.000 18.33 15.83 46.95 5.25
701 703 2.270923 CTATCTGCTTGTTGCTACGCA 58.729 47.619 1.59 1.59 43.37 5.24
702 704 1.004504 GCTATCTGCTTGTTGCTACGC 60.005 52.381 0.00 0.00 43.37 4.42
703 705 2.270923 TGCTATCTGCTTGTTGCTACG 58.729 47.619 0.00 0.00 43.37 3.51
704 706 2.611292 CCTGCTATCTGCTTGTTGCTAC 59.389 50.000 0.00 0.00 43.37 3.58
705 707 2.501316 TCCTGCTATCTGCTTGTTGCTA 59.499 45.455 0.00 0.00 43.37 3.49
706 708 1.280133 TCCTGCTATCTGCTTGTTGCT 59.720 47.619 0.00 0.00 43.37 3.91
707 709 1.742761 TCCTGCTATCTGCTTGTTGC 58.257 50.000 0.00 0.00 43.37 4.17
708 710 3.943381 TCAATCCTGCTATCTGCTTGTTG 59.057 43.478 0.00 0.00 43.37 3.33
709 711 4.226427 TCAATCCTGCTATCTGCTTGTT 57.774 40.909 0.00 0.00 43.37 2.83
710 712 3.920231 TCAATCCTGCTATCTGCTTGT 57.080 42.857 0.00 0.00 43.37 3.16
711 713 3.752222 GGATCAATCCTGCTATCTGCTTG 59.248 47.826 1.59 0.00 43.73 4.01
712 714 3.244840 GGGATCAATCCTGCTATCTGCTT 60.245 47.826 8.87 0.00 46.35 3.91
713 715 2.305343 GGGATCAATCCTGCTATCTGCT 59.695 50.000 8.87 0.00 46.35 4.24
714 716 2.305343 AGGGATCAATCCTGCTATCTGC 59.695 50.000 8.87 0.00 46.35 4.26
715 717 3.940319 CAGGGATCAATCCTGCTATCTG 58.060 50.000 8.87 3.28 46.35 2.90
723 725 2.109799 CGCGCAGGGATCAATCCT 59.890 61.111 8.75 0.00 46.35 3.24
724 726 2.974698 CCGCGCAGGGATCAATCC 60.975 66.667 8.75 0.01 46.37 3.01
725 727 3.654020 GCCGCGCAGGGATCAATC 61.654 66.667 17.73 0.00 46.37 2.67
738 740 3.503363 CTGCAGCTAACTGGCCGC 61.503 66.667 0.00 0.00 44.63 6.53
739 741 1.153289 ATCTGCAGCTAACTGGCCG 60.153 57.895 9.47 0.00 44.63 6.13
740 742 1.722636 GCATCTGCAGCTAACTGGCC 61.723 60.000 9.47 0.00 44.63 5.36
741 743 0.747283 AGCATCTGCAGCTAACTGGC 60.747 55.000 9.47 0.00 44.63 4.85
742 744 1.669779 GAAGCATCTGCAGCTAACTGG 59.330 52.381 9.47 0.00 44.63 4.00
744 746 2.630158 CTGAAGCATCTGCAGCTAACT 58.370 47.619 9.47 0.33 42.53 2.24
758 760 6.856426 ACGTTAAAAGTTTCTATTGCTGAAGC 59.144 34.615 0.00 0.00 42.50 3.86
759 761 7.266335 CGACGTTAAAAGTTTCTATTGCTGAAG 59.734 37.037 0.00 0.00 0.00 3.02
760 762 7.067116 CGACGTTAAAAGTTTCTATTGCTGAA 58.933 34.615 0.00 0.00 0.00 3.02
761 763 6.586751 CGACGTTAAAAGTTTCTATTGCTGA 58.413 36.000 0.00 0.00 0.00 4.26
762 764 5.280678 GCGACGTTAAAAGTTTCTATTGCTG 59.719 40.000 0.00 0.00 0.00 4.41
763 765 5.178809 AGCGACGTTAAAAGTTTCTATTGCT 59.821 36.000 0.00 0.00 0.00 3.91
764 766 5.379827 AGCGACGTTAAAAGTTTCTATTGC 58.620 37.500 0.00 0.00 0.00 3.56
765 767 8.922738 TTAAGCGACGTTAAAAGTTTCTATTG 57.077 30.769 0.00 0.00 0.00 1.90
766 768 9.537848 CATTAAGCGACGTTAAAAGTTTCTATT 57.462 29.630 0.00 0.00 0.00 1.73
767 769 7.691050 GCATTAAGCGACGTTAAAAGTTTCTAT 59.309 33.333 0.00 0.00 0.00 1.98
768 770 7.011189 GCATTAAGCGACGTTAAAAGTTTCTA 58.989 34.615 0.00 0.00 0.00 2.10
769 771 5.849604 GCATTAAGCGACGTTAAAAGTTTCT 59.150 36.000 0.00 0.00 0.00 2.52
770 772 6.050928 GCATTAAGCGACGTTAAAAGTTTC 57.949 37.500 0.00 0.00 0.00 2.78
785 787 5.444745 GCGGAGACTATTTATCGCATTAAGC 60.445 44.000 0.00 0.00 42.27 3.09
786 788 5.220043 CGCGGAGACTATTTATCGCATTAAG 60.220 44.000 0.00 0.00 42.75 1.85
787 789 4.619760 CGCGGAGACTATTTATCGCATTAA 59.380 41.667 0.00 0.00 42.75 1.40
788 790 4.163552 CGCGGAGACTATTTATCGCATTA 58.836 43.478 0.00 0.00 42.75 1.90
789 791 2.987149 CGCGGAGACTATTTATCGCATT 59.013 45.455 0.00 0.00 42.75 3.56
790 792 2.596452 CGCGGAGACTATTTATCGCAT 58.404 47.619 0.00 0.00 42.75 4.73
791 793 1.335597 CCGCGGAGACTATTTATCGCA 60.336 52.381 24.07 0.00 42.75 5.10
792 794 1.337821 CCGCGGAGACTATTTATCGC 58.662 55.000 24.07 0.00 39.79 4.58
793 795 1.402456 CCCCGCGGAGACTATTTATCG 60.402 57.143 30.73 4.18 0.00 2.92
794 796 1.891150 TCCCCGCGGAGACTATTTATC 59.109 52.381 30.73 0.00 32.86 1.75
795 797 2.005370 TCCCCGCGGAGACTATTTAT 57.995 50.000 30.73 0.00 32.86 1.40
796 798 1.684983 CTTCCCCGCGGAGACTATTTA 59.315 52.381 30.73 0.42 40.10 1.40
797 799 0.464452 CTTCCCCGCGGAGACTATTT 59.536 55.000 30.73 0.00 40.10 1.40
798 800 1.400530 CCTTCCCCGCGGAGACTATT 61.401 60.000 30.73 0.00 40.10 1.73
799 801 1.833049 CCTTCCCCGCGGAGACTAT 60.833 63.158 30.73 0.00 40.10 2.12
800 802 2.441532 CCTTCCCCGCGGAGACTA 60.442 66.667 30.73 3.16 40.10 2.59
806 808 4.875713 CAATCCCCTTCCCCGCGG 62.876 72.222 21.04 21.04 0.00 6.46
807 809 3.792736 TCAATCCCCTTCCCCGCG 61.793 66.667 0.00 0.00 0.00 6.46
808 810 2.124278 GTCAATCCCCTTCCCCGC 60.124 66.667 0.00 0.00 0.00 6.13
809 811 2.595655 GGTCAATCCCCTTCCCCG 59.404 66.667 0.00 0.00 0.00 5.73
810 812 2.595655 CGGTCAATCCCCTTCCCC 59.404 66.667 0.00 0.00 0.00 4.81
811 813 2.124278 GCGGTCAATCCCCTTCCC 60.124 66.667 0.00 0.00 0.00 3.97
812 814 2.513897 CGCGGTCAATCCCCTTCC 60.514 66.667 0.00 0.00 0.00 3.46
813 815 2.513897 CCGCGGTCAATCCCCTTC 60.514 66.667 19.50 0.00 0.00 3.46
814 816 4.796495 GCCGCGGTCAATCCCCTT 62.796 66.667 28.70 0.00 0.00 3.95
834 836 2.184830 CAGCATCGTGGGCCAGATG 61.185 63.158 27.59 27.59 45.06 2.90
835 837 1.337384 TACAGCATCGTGGGCCAGAT 61.337 55.000 6.40 9.66 0.00 2.90
836 838 1.987306 TACAGCATCGTGGGCCAGA 60.987 57.895 6.40 7.37 0.00 3.86
837 839 1.815421 GTACAGCATCGTGGGCCAG 60.815 63.158 6.40 0.73 0.00 4.85
838 840 2.267642 GTACAGCATCGTGGGCCA 59.732 61.111 0.00 0.00 0.00 5.36
839 841 2.513897 GGTACAGCATCGTGGGCC 60.514 66.667 0.00 0.00 0.00 5.80
840 842 2.845752 TTCGGTACAGCATCGTGGGC 62.846 60.000 0.00 0.00 0.00 5.36
841 843 0.390603 TTTCGGTACAGCATCGTGGG 60.391 55.000 0.00 0.00 0.00 4.61
842 844 1.393539 CTTTTCGGTACAGCATCGTGG 59.606 52.381 0.00 0.00 0.00 4.94
843 845 1.201921 GCTTTTCGGTACAGCATCGTG 60.202 52.381 0.00 0.00 33.45 4.35
844 846 1.076332 GCTTTTCGGTACAGCATCGT 58.924 50.000 0.00 0.00 33.45 3.73
845 847 0.373716 GGCTTTTCGGTACAGCATCG 59.626 55.000 4.72 0.00 35.05 3.84
846 848 0.733150 GGGCTTTTCGGTACAGCATC 59.267 55.000 4.72 0.00 35.05 3.91
847 849 0.037590 TGGGCTTTTCGGTACAGCAT 59.962 50.000 4.72 0.00 35.05 3.79
848 850 0.605319 CTGGGCTTTTCGGTACAGCA 60.605 55.000 4.72 0.00 35.05 4.41
849 851 0.321298 TCTGGGCTTTTCGGTACAGC 60.321 55.000 0.00 0.00 0.00 4.40
850 852 1.804748 GTTCTGGGCTTTTCGGTACAG 59.195 52.381 0.00 0.00 0.00 2.74
851 853 1.141254 TGTTCTGGGCTTTTCGGTACA 59.859 47.619 0.00 0.00 0.00 2.90
852 854 1.886886 TGTTCTGGGCTTTTCGGTAC 58.113 50.000 0.00 0.00 0.00 3.34
853 855 2.619646 GTTTGTTCTGGGCTTTTCGGTA 59.380 45.455 0.00 0.00 0.00 4.02
854 856 1.407618 GTTTGTTCTGGGCTTTTCGGT 59.592 47.619 0.00 0.00 0.00 4.69
855 857 1.407258 TGTTTGTTCTGGGCTTTTCGG 59.593 47.619 0.00 0.00 0.00 4.30
856 858 2.857748 GTTGTTTGTTCTGGGCTTTTCG 59.142 45.455 0.00 0.00 0.00 3.46
857 859 3.616821 GTGTTGTTTGTTCTGGGCTTTTC 59.383 43.478 0.00 0.00 0.00 2.29
858 860 3.595173 GTGTTGTTTGTTCTGGGCTTTT 58.405 40.909 0.00 0.00 0.00 2.27
859 861 2.093711 GGTGTTGTTTGTTCTGGGCTTT 60.094 45.455 0.00 0.00 0.00 3.51
860 862 1.480545 GGTGTTGTTTGTTCTGGGCTT 59.519 47.619 0.00 0.00 0.00 4.35
861 863 1.111277 GGTGTTGTTTGTTCTGGGCT 58.889 50.000 0.00 0.00 0.00 5.19
862 864 1.111277 AGGTGTTGTTTGTTCTGGGC 58.889 50.000 0.00 0.00 0.00 5.36
863 865 1.408702 CCAGGTGTTGTTTGTTCTGGG 59.591 52.381 0.00 0.00 38.38 4.45
864 866 2.358898 CTCCAGGTGTTGTTTGTTCTGG 59.641 50.000 0.00 0.00 42.10 3.86
865 867 3.065371 GTCTCCAGGTGTTGTTTGTTCTG 59.935 47.826 0.00 0.00 0.00 3.02
866 868 3.279434 GTCTCCAGGTGTTGTTTGTTCT 58.721 45.455 0.00 0.00 0.00 3.01
867 869 2.031683 CGTCTCCAGGTGTTGTTTGTTC 59.968 50.000 0.00 0.00 0.00 3.18
868 870 2.014128 CGTCTCCAGGTGTTGTTTGTT 58.986 47.619 0.00 0.00 0.00 2.83
873 875 0.834612 TTTCCGTCTCCAGGTGTTGT 59.165 50.000 0.00 0.00 0.00 3.32
874 876 1.512926 CTTTCCGTCTCCAGGTGTTG 58.487 55.000 0.00 0.00 0.00 3.33
890 892 4.699522 GACTCGGGCGTGGGCTTT 62.700 66.667 0.00 0.00 39.81 3.51
901 903 2.352032 GGGGTGACTCAGGACTCGG 61.352 68.421 0.00 0.00 0.00 4.63
902 904 1.606601 TGGGGTGACTCAGGACTCG 60.607 63.158 0.00 0.00 34.24 4.18
1014 1033 2.519780 GAGGCGAGGATCCTCCGT 60.520 66.667 31.77 24.82 43.32 4.69
1371 11657 1.074248 GGGGAAAAAGGAGTCGGCA 59.926 57.895 0.00 0.00 0.00 5.69
1457 11743 1.196808 CACGACCCAAAGAAACGGATG 59.803 52.381 0.00 0.00 0.00 3.51
1586 11872 1.985159 TGGACTTGTGATGGCTAACCT 59.015 47.619 0.00 0.00 36.63 3.50
1599 11885 3.510388 TGTATCTTCTCGCTGGACTTG 57.490 47.619 0.00 0.00 0.00 3.16
1659 11945 4.033932 GCACTTTACAAGCAAACAAAAGGG 59.966 41.667 0.00 0.00 34.43 3.95
1793 12090 2.179547 CACGGTGCAGCACAGTTCA 61.180 57.895 26.48 0.00 40.42 3.18
1794 12091 2.633657 CACGGTGCAGCACAGTTC 59.366 61.111 26.48 8.88 40.42 3.01
1795 12092 3.585990 GCACGGTGCAGCACAGTT 61.586 61.111 26.48 11.07 44.26 3.16
1808 12105 4.846137 GCAGCGGATTATAAAATAAGCACG 59.154 41.667 0.00 0.00 32.84 5.34
1853 12161 7.484975 TGGTGTTTGTTTAACCAACTTATCTG 58.515 34.615 12.19 0.00 40.97 2.90
1975 12285 0.747255 CTGGTCATGTAGGGAGGACG 59.253 60.000 0.00 0.00 0.00 4.79
2025 12343 4.040755 AGATTAACAGCCTCACCCACTAT 58.959 43.478 0.00 0.00 0.00 2.12
2096 12414 8.621532 ACCGAACTATGTATGCATGAATAATT 57.378 30.769 10.16 3.26 36.58 1.40
2225 12543 7.201461 GCAAATTACATCACCACATGATTTCAC 60.201 37.037 0.00 0.00 46.54 3.18
2410 14193 3.241530 AGGACCAAGCCGCTGACA 61.242 61.111 0.00 0.00 0.00 3.58
2817 14660 1.069703 CGTGCTTAATGGCATCCATCG 60.070 52.381 0.00 0.00 44.40 3.84
2836 14679 2.485426 ACAAAATCTCACATCCACTGCG 59.515 45.455 0.00 0.00 0.00 5.18
3131 14974 7.362920 GGCTAACATGTTTTTAGACCATGACAT 60.363 37.037 17.78 0.00 38.56 3.06
3367 15214 0.179029 AATTGGCGGTCGGATTAGGG 60.179 55.000 0.00 0.00 0.00 3.53
3579 15427 3.641906 GGAAGGATGTAAAGAGGATCCGA 59.358 47.826 5.98 0.00 40.65 4.55
3622 15470 3.325135 GCATACCTCCACTATAGCCAAGT 59.675 47.826 0.00 0.00 0.00 3.16
3631 15479 5.185454 CAGACAAATTGCATACCTCCACTA 58.815 41.667 0.00 0.00 0.00 2.74
3723 15571 8.630054 AAATCCTACAACACTAAGCATACAAA 57.370 30.769 0.00 0.00 0.00 2.83
3774 15622 2.041620 TGGAAGGAAATTCAGGTCCAGG 59.958 50.000 7.24 0.00 39.91 4.45
4062 15952 7.149569 TCAAGCATCTTCATTTTACTGGAAG 57.850 36.000 0.00 0.00 39.44 3.46
4064 15954 8.267183 TCTATCAAGCATCTTCATTTTACTGGA 58.733 33.333 0.00 0.00 0.00 3.86
4085 15975 3.906846 ACCATGACTCCCATTCCTCTATC 59.093 47.826 0.00 0.00 31.94 2.08
4122 16012 5.304101 ACTGTCATACCTTGGCAAAATTCAA 59.696 36.000 0.00 0.00 40.05 2.69
4272 16204 5.601662 ACTCGAACCATACTCACCAATATG 58.398 41.667 0.00 0.00 0.00 1.78
4273 16205 5.598830 AGACTCGAACCATACTCACCAATAT 59.401 40.000 0.00 0.00 0.00 1.28
4338 16270 6.341316 TGAGCTATTAGACCATCAAACAGAC 58.659 40.000 0.00 0.00 0.00 3.51
4381 16313 6.560711 GGGTTGACGCATAACTGATAAAAAT 58.439 36.000 0.00 0.00 0.00 1.82
4401 16346 0.535102 CAACTTCCTCACAGCGGGTT 60.535 55.000 0.00 0.00 0.00 4.11
4434 16379 2.157738 GTGCAGACTGAGCTTCCAAAT 58.842 47.619 6.65 0.00 0.00 2.32
4530 16475 4.042809 TGCTTCTTACTTCCTCCAATTCCA 59.957 41.667 0.00 0.00 0.00 3.53
4553 16498 2.890945 GGGCGGCCATGTATTCTATTTT 59.109 45.455 25.33 0.00 0.00 1.82
4711 16656 1.356059 TGCATGGTTTACCTGCCCTTA 59.644 47.619 15.78 1.34 38.51 2.69
4824 16770 1.372128 CAGCCTCCTTGCGCAAAAC 60.372 57.895 25.01 11.38 36.02 2.43
4841 16787 2.884012 ACACGATGAAGAAACAATGGCA 59.116 40.909 0.00 0.00 0.00 4.92
5226 17188 3.489785 GCTCATGTTACGTTATTCCGGAG 59.510 47.826 3.34 0.00 0.00 4.63
5234 17201 3.904571 AGAACACGCTCATGTTACGTTA 58.095 40.909 0.00 0.00 42.89 3.18
5235 17202 2.750948 AGAACACGCTCATGTTACGTT 58.249 42.857 0.00 0.12 42.89 3.99
5236 17203 2.433868 AGAACACGCTCATGTTACGT 57.566 45.000 0.00 0.00 42.89 3.57
5237 17204 3.428870 AGAAAGAACACGCTCATGTTACG 59.571 43.478 0.00 0.00 42.89 3.18
5238 17205 4.992381 AGAAAGAACACGCTCATGTTAC 57.008 40.909 0.00 0.00 42.89 2.50
5453 17421 2.047040 GCGTTTCTTTTCAGCTCAAGC 58.953 47.619 0.00 0.00 42.49 4.01
5585 17553 2.230892 GTGAACCGCACGTTGATCA 58.769 52.632 0.00 0.00 37.83 2.92
5625 17601 5.988310 TTTAGACAGAATCGTTCTACCCA 57.012 39.130 0.87 0.00 38.11 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.