Multiple sequence alignment - TraesCS1A01G188800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G188800 chr1A 100.000 6198 0 0 1 6198 341866740 341872937 0.000000e+00 11446
1 TraesCS1A01G188800 chr1A 94.715 246 9 2 1952 2193 269296382 269296137 4.530000e-101 379
2 TraesCS1A01G188800 chr1B 92.795 4025 148 42 2187 6149 353942767 353946711 0.000000e+00 5696
3 TraesCS1A01G188800 chr1B 95.701 977 37 5 975 1951 353941796 353942767 0.000000e+00 1567
4 TraesCS1A01G188800 chr1B 94.904 157 8 0 6026 6182 501626415 501626571 4.800000e-61 246
5 TraesCS1A01G188800 chr1D 91.711 2606 86 29 2521 5076 258983251 258980726 0.000000e+00 3496
6 TraesCS1A01G188800 chr1D 94.467 1970 79 21 1 1951 258985617 258983659 0.000000e+00 3007
7 TraesCS1A01G188800 chr1D 94.037 1090 40 14 5083 6161 258980653 258979578 0.000000e+00 1629
8 TraesCS1A01G188800 chr1D 89.163 406 33 8 2190 2584 258983656 258983251 4.320000e-136 496
9 TraesCS1A01G188800 chr1D 94.904 157 8 0 6026 6182 11505786 11505942 4.800000e-61 246
10 TraesCS1A01G188800 chr4A 97.034 236 6 1 1952 2186 613553005 613553240 4.500000e-106 396
11 TraesCS1A01G188800 chr2A 95.935 246 7 2 1950 2192 84977526 84977771 4.500000e-106 396
12 TraesCS1A01G188800 chr7A 96.983 232 7 0 1951 2182 25860685 25860916 2.090000e-104 390
13 TraesCS1A01G188800 chr7A 95.816 239 9 1 1949 2186 621764806 621765044 9.750000e-103 385
14 TraesCS1A01G188800 chr6A 95.851 241 7 2 1956 2193 79971841 79971601 2.710000e-103 387
15 TraesCS1A01G188800 chr3A 94.400 250 11 2 1953 2199 644616803 644616554 1.260000e-101 381
16 TraesCS1A01G188800 chr3A 95.082 244 9 2 1952 2192 662907695 662907452 1.260000e-101 381
17 TraesCS1A01G188800 chr5A 93.359 256 13 3 1951 2203 7171301 7171047 5.870000e-100 375
18 TraesCS1A01G188800 chr5A 78.594 313 63 4 1157 1467 685988676 685988986 2.930000e-48 204
19 TraesCS1A01G188800 chr5A 79.851 268 44 8 5834 6096 685996106 685996368 2.950000e-43 187
20 TraesCS1A01G188800 chr5D 96.815 157 5 0 6026 6182 532474000 532474156 4.760000e-66 263
21 TraesCS1A01G188800 chr2B 96.104 154 6 0 6029 6182 12312207 12312054 1.030000e-62 252
22 TraesCS1A01G188800 chr7B 94.904 157 8 0 6026 6182 71219154 71219310 4.800000e-61 246
23 TraesCS1A01G188800 chr7B 86.093 151 17 1 2727 2877 652931761 652931615 6.430000e-35 159
24 TraesCS1A01G188800 chrUn 94.805 154 8 0 6029 6182 227391250 227391097 2.230000e-59 241
25 TraesCS1A01G188800 chrUn 94.268 157 9 0 6026 6182 241175836 241175992 2.230000e-59 241
26 TraesCS1A01G188800 chr4D 78.594 313 63 4 1157 1467 502571394 502571704 2.930000e-48 204
27 TraesCS1A01G188800 chr4D 79.851 268 44 8 5834 6096 502578104 502578366 2.950000e-43 187
28 TraesCS1A01G188800 chr4B 78.526 312 63 4 1158 1467 646968311 646968620 1.050000e-47 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G188800 chr1A 341866740 341872937 6197 False 11446.0 11446 100.0000 1 6198 1 chr1A.!!$F1 6197
1 TraesCS1A01G188800 chr1B 353941796 353946711 4915 False 3631.5 5696 94.2480 975 6149 2 chr1B.!!$F2 5174
2 TraesCS1A01G188800 chr1D 258979578 258985617 6039 True 2157.0 3496 92.3445 1 6161 4 chr1D.!!$R1 6160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.040067 CTTCTTGTTGTGCGCCTTCC 60.040 55.000 4.18 0.00 0.00 3.46 F
721 739 0.456312 CTGGGACACGAGCGAGTTAC 60.456 60.000 0.00 0.00 0.00 2.50 F
967 986 0.588252 CCAAACAGTTCTGCCTGACG 59.412 55.000 0.00 0.00 36.30 4.35 F
1973 1992 1.076024 ACTCCCTGCATTCCACAATGT 59.924 47.619 0.00 0.00 41.51 2.71 F
1993 2012 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.00 0.00 0.00 5.28 F
1999 2018 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02 F
2009 2028 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79 F
2160 2179 0.106149 AGTTGAACCTCGGAAAGCGT 59.894 50.000 0.00 0.00 0.00 5.07 F
2161 2180 0.234884 GTTGAACCTCGGAAAGCGTG 59.765 55.000 0.00 0.00 0.00 5.34 F
2162 2181 0.882927 TTGAACCTCGGAAAGCGTGG 60.883 55.000 0.00 0.00 0.00 4.94 F
2178 2197 1.002900 CGTGGGCGCACTATATTTTGG 60.003 52.381 28.52 8.56 0.00 3.28 F
3410 3516 1.827344 GCCCTGAAAGATTTGAAGGGG 59.173 52.381 18.08 5.24 46.61 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 1993 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.0 0.00 4.40 R
1980 1999 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.0 0.00 3.71 R
1990 2009 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.0 39.21 4.94 R
2785 2891 1.328680 GCACCATAGACAGCAACATCG 59.671 52.381 0.00 0.0 0.00 3.84 R
3451 3557 1.406539 CCACCTGCCTATGATGCAAAC 59.593 52.381 0.00 0.0 38.46 2.93 R
3942 4051 1.619654 CAACAGGGTTTGAGCATGGA 58.380 50.000 0.00 0.0 30.93 3.41 R
4054 4168 3.484407 AGTGACAAGCAAAGAGAGCAAT 58.516 40.909 0.00 0.0 0.00 3.56 R
4063 4177 2.090760 TCAGTGCAAGTGACAAGCAAA 58.909 42.857 3.60 0.0 42.42 3.68 R
4119 4233 5.221541 TGACAGGTTTTTGTTGGTTCAGTTT 60.222 36.000 0.00 0.0 0.00 2.66 R
4226 4341 7.621428 AGAAGGTTCAACACATCTCATAATG 57.379 36.000 0.00 0.0 0.00 1.90 R
4565 4688 2.836636 TCTCTAGCAGGGACACAGAT 57.163 50.000 0.00 0.0 0.00 2.90 R
5495 5735 0.179092 CCCGGGGTTTACTCGATGAC 60.179 60.000 14.71 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.040067 CTTCTTGTTGTGCGCCTTCC 60.040 55.000 4.18 0.00 0.00 3.46
81 82 5.378292 TTTTCTTTTGGGTTTTGTTTGGC 57.622 34.783 0.00 0.00 0.00 4.52
93 94 6.442952 GGTTTTGTTTGGCAAGTTTTTCTTT 58.557 32.000 0.00 0.00 38.47 2.52
355 369 7.922505 TCAAAATCGATGAACGTTTTTCAAT 57.077 28.000 0.46 0.00 45.66 2.57
359 373 8.970529 AAATCGATGAACGTTTTTCAATTTTG 57.029 26.923 0.46 0.00 39.74 2.44
364 378 8.427012 CGATGAACGTTTTTCAATTTTGATGAT 58.573 29.630 0.46 0.00 35.69 2.45
496 513 6.580041 CCGTGAAGTTTCTTTGAATTCATGAG 59.420 38.462 9.40 10.56 38.55 2.90
497 514 6.087291 CGTGAAGTTTCTTTGAATTCATGAGC 59.913 38.462 9.40 7.87 38.55 4.26
584 602 8.483743 TTTTAGATTCGCGAACTGTTTTAAAG 57.516 30.769 26.00 0.00 0.00 1.85
591 609 4.789119 CGCGAACTGTTTTAAAGTCACAAA 59.211 37.500 0.00 0.00 0.00 2.83
592 610 5.284188 CGCGAACTGTTTTAAAGTCACAAAA 59.716 36.000 0.00 0.00 0.00 2.44
617 635 2.756207 ACTTTAAAACACTGGCAACCGT 59.244 40.909 0.00 0.00 0.00 4.83
689 707 9.535878 AAAGCGAACCAATTAATAGAAACAAAA 57.464 25.926 0.00 0.00 0.00 2.44
718 736 4.057428 GCTGGGACACGAGCGAGT 62.057 66.667 0.00 0.00 38.67 4.18
721 739 0.456312 CTGGGACACGAGCGAGTTAC 60.456 60.000 0.00 0.00 0.00 2.50
810 828 2.418197 GCTACAGGCGTCAAATAGGTGA 60.418 50.000 0.00 0.00 0.00 4.02
828 846 2.364324 GTGATATGTTCTACGGGCCTGA 59.636 50.000 21.41 0.42 0.00 3.86
854 872 1.072806 TGCTCTGCCACACTCTTCATT 59.927 47.619 0.00 0.00 0.00 2.57
869 887 4.651778 TCTTCATTTGGGCCGATATAAGG 58.348 43.478 0.00 0.00 0.00 2.69
889 907 1.226717 CTAGCGAGAAGGTGGCGTC 60.227 63.158 0.00 0.00 34.44 5.19
932 951 3.118775 AGTGCCTGTGCGACAAATAGATA 60.119 43.478 0.00 0.00 41.78 1.98
962 981 1.239347 GTCTCCCAAACAGTTCTGCC 58.761 55.000 0.00 0.00 0.00 4.85
963 982 1.140312 TCTCCCAAACAGTTCTGCCT 58.860 50.000 0.00 0.00 0.00 4.75
964 983 1.202806 TCTCCCAAACAGTTCTGCCTG 60.203 52.381 0.00 0.00 38.45 4.85
965 984 0.843309 TCCCAAACAGTTCTGCCTGA 59.157 50.000 0.00 0.00 36.30 3.86
966 985 0.954452 CCCAAACAGTTCTGCCTGAC 59.046 55.000 0.00 0.00 36.30 3.51
967 986 0.588252 CCAAACAGTTCTGCCTGACG 59.412 55.000 0.00 0.00 36.30 4.35
969 988 1.498865 AAACAGTTCTGCCTGACGCG 61.499 55.000 3.53 3.53 42.08 6.01
1011 1030 1.557832 CCCTCCACTTCCCATTTCGTA 59.442 52.381 0.00 0.00 0.00 3.43
1495 1514 3.154710 CCCTAAACTTCGCTCCCTTTTT 58.845 45.455 0.00 0.00 0.00 1.94
1508 1527 5.666462 GCTCCCTTTTTGTTTGTTTTAGGA 58.334 37.500 0.00 0.00 0.00 2.94
1512 1531 7.625469 TCCCTTTTTGTTTGTTTTAGGATTGT 58.375 30.769 0.00 0.00 0.00 2.71
1514 1533 9.554395 CCCTTTTTGTTTGTTTTAGGATTGTAT 57.446 29.630 0.00 0.00 0.00 2.29
1573 1592 1.601903 TGGCGTGTGTTCTGAAATCAC 59.398 47.619 12.90 12.90 0.00 3.06
1819 1838 1.617947 GGAGCAGACCCCAGACGATT 61.618 60.000 0.00 0.00 0.00 3.34
1961 1980 6.420913 TGTTTCTATCCTAATACTCCCTGC 57.579 41.667 0.00 0.00 0.00 4.85
1962 1981 5.903010 TGTTTCTATCCTAATACTCCCTGCA 59.097 40.000 0.00 0.00 0.00 4.41
1963 1982 6.558775 TGTTTCTATCCTAATACTCCCTGCAT 59.441 38.462 0.00 0.00 0.00 3.96
1964 1983 7.072454 TGTTTCTATCCTAATACTCCCTGCATT 59.928 37.037 0.00 0.00 0.00 3.56
1965 1984 6.859112 TCTATCCTAATACTCCCTGCATTC 57.141 41.667 0.00 0.00 0.00 2.67
1966 1985 4.917906 ATCCTAATACTCCCTGCATTCC 57.082 45.455 0.00 0.00 0.00 3.01
1967 1986 3.664320 TCCTAATACTCCCTGCATTCCA 58.336 45.455 0.00 0.00 0.00 3.53
1968 1987 3.391296 TCCTAATACTCCCTGCATTCCAC 59.609 47.826 0.00 0.00 0.00 4.02
1969 1988 3.136443 CCTAATACTCCCTGCATTCCACA 59.864 47.826 0.00 0.00 0.00 4.17
1970 1989 3.737559 AATACTCCCTGCATTCCACAA 57.262 42.857 0.00 0.00 0.00 3.33
1971 1990 3.959495 ATACTCCCTGCATTCCACAAT 57.041 42.857 0.00 0.00 0.00 2.71
1972 1991 1.843368 ACTCCCTGCATTCCACAATG 58.157 50.000 0.00 0.00 42.26 2.82
1973 1992 1.076024 ACTCCCTGCATTCCACAATGT 59.924 47.619 0.00 0.00 41.51 2.71
1974 1993 2.308570 ACTCCCTGCATTCCACAATGTA 59.691 45.455 0.00 0.00 41.51 2.29
1975 1994 2.947652 CTCCCTGCATTCCACAATGTAG 59.052 50.000 5.98 5.98 46.81 2.74
1976 1995 2.308570 TCCCTGCATTCCACAATGTAGT 59.691 45.455 10.64 0.00 46.18 2.73
1977 1996 2.424601 CCCTGCATTCCACAATGTAGTG 59.575 50.000 10.64 0.00 46.18 2.74
1978 1997 2.159338 CCTGCATTCCACAATGTAGTGC 60.159 50.000 10.64 0.00 46.18 4.40
1979 1998 2.751259 CTGCATTCCACAATGTAGTGCT 59.249 45.455 5.48 0.00 43.92 4.40
1980 1999 3.156293 TGCATTCCACAATGTAGTGCTT 58.844 40.909 5.48 0.00 41.51 3.91
1981 2000 3.191162 TGCATTCCACAATGTAGTGCTTC 59.809 43.478 5.48 0.00 41.51 3.86
1982 2001 3.428045 GCATTCCACAATGTAGTGCTTCC 60.428 47.826 0.00 0.00 41.51 3.46
1983 2002 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
1984 2003 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
1985 2004 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
1986 2005 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
1987 2006 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
1988 2007 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
1989 2008 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
1990 2009 4.101741 ACAATGTAGTGCTTCCTCTATCCC 59.898 45.833 0.00 0.00 0.00 3.85
1991 2010 2.679082 TGTAGTGCTTCCTCTATCCCC 58.321 52.381 0.00 0.00 0.00 4.81
1992 2011 1.614413 GTAGTGCTTCCTCTATCCCCG 59.386 57.143 0.00 0.00 0.00 5.73
1993 2012 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.00 0.00 0.00 5.28
1994 2013 0.105039 GTGCTTCCTCTATCCCCGTG 59.895 60.000 0.00 0.00 0.00 4.94
1995 2014 1.069935 GCTTCCTCTATCCCCGTGC 59.930 63.158 0.00 0.00 0.00 5.34
1996 2015 1.403687 GCTTCCTCTATCCCCGTGCT 61.404 60.000 0.00 0.00 0.00 4.40
1997 2016 1.123928 CTTCCTCTATCCCCGTGCTT 58.876 55.000 0.00 0.00 0.00 3.91
1998 2017 1.069358 CTTCCTCTATCCCCGTGCTTC 59.931 57.143 0.00 0.00 0.00 3.86
1999 2018 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
2000 2019 0.830648 CCTCTATCCCCGTGCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
2001 2020 1.473434 CCTCTATCCCCGTGCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
2002 2021 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
2003 2022 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
2004 2023 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
2005 2024 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
2006 2025 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
2007 2026 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
2008 2027 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
2009 2028 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
2010 2029 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
2011 2030 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
2012 2031 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
2013 2032 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
2014 2033 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
2015 2034 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
2016 2035 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
2017 2036 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
2018 2037 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
2019 2038 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
2020 2039 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
2022 2041 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
2023 2042 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
2024 2043 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
2025 2044 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
2026 2045 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
2027 2046 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
2028 2047 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
2029 2048 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
2030 2049 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
2031 2050 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
2032 2051 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
2033 2052 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
2034 2053 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
2035 2054 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
2036 2055 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
2061 2080 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
2062 2081 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
2063 2082 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
2064 2083 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
2065 2084 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
2107 2126 9.974980 TTTCAATTATATAATTTTTCTCCCGCC 57.025 29.630 16.47 0.00 33.88 6.13
2108 2127 7.812648 TCAATTATATAATTTTTCTCCCGCCG 58.187 34.615 16.47 3.50 33.88 6.46
2109 2128 5.616488 TTATATAATTTTTCTCCCGCCGC 57.384 39.130 0.00 0.00 0.00 6.53
2110 2129 1.757682 ATAATTTTTCTCCCGCCGCA 58.242 45.000 0.00 0.00 0.00 5.69
2111 2130 1.091537 TAATTTTTCTCCCGCCGCAG 58.908 50.000 0.00 0.00 0.00 5.18
2112 2131 0.893727 AATTTTTCTCCCGCCGCAGT 60.894 50.000 0.00 0.00 0.00 4.40
2113 2132 0.893727 ATTTTTCTCCCGCCGCAGTT 60.894 50.000 0.00 0.00 0.00 3.16
2114 2133 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
2115 2134 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
2120 2139 4.680237 CCGCCGCAGTTGGTCTCA 62.680 66.667 0.00 0.00 0.00 3.27
2121 2140 2.434884 CGCCGCAGTTGGTCTCAT 60.435 61.111 0.00 0.00 0.00 2.90
2122 2141 2.034879 CGCCGCAGTTGGTCTCATT 61.035 57.895 0.00 0.00 0.00 2.57
2123 2142 1.503542 GCCGCAGTTGGTCTCATTG 59.496 57.895 0.00 0.00 0.00 2.82
2124 2143 1.926511 GCCGCAGTTGGTCTCATTGG 61.927 60.000 0.00 0.00 0.00 3.16
2125 2144 0.606401 CCGCAGTTGGTCTCATTGGT 60.606 55.000 0.00 0.00 0.00 3.67
2126 2145 1.238439 CGCAGTTGGTCTCATTGGTT 58.762 50.000 0.00 0.00 0.00 3.67
2127 2146 2.422597 CGCAGTTGGTCTCATTGGTTA 58.577 47.619 0.00 0.00 0.00 2.85
2128 2147 2.811431 CGCAGTTGGTCTCATTGGTTAA 59.189 45.455 0.00 0.00 0.00 2.01
2129 2148 3.252215 CGCAGTTGGTCTCATTGGTTAAA 59.748 43.478 0.00 0.00 0.00 1.52
2130 2149 4.082787 CGCAGTTGGTCTCATTGGTTAAAT 60.083 41.667 0.00 0.00 0.00 1.40
2131 2150 5.564651 CGCAGTTGGTCTCATTGGTTAAATT 60.565 40.000 0.00 0.00 0.00 1.82
2132 2151 6.223120 GCAGTTGGTCTCATTGGTTAAATTT 58.777 36.000 0.00 0.00 0.00 1.82
2133 2152 7.375053 GCAGTTGGTCTCATTGGTTAAATTTA 58.625 34.615 0.00 0.00 0.00 1.40
2134 2153 8.034804 GCAGTTGGTCTCATTGGTTAAATTTAT 58.965 33.333 0.00 0.00 0.00 1.40
2135 2154 9.357652 CAGTTGGTCTCATTGGTTAAATTTATG 57.642 33.333 0.00 0.00 0.00 1.90
2136 2155 8.531146 AGTTGGTCTCATTGGTTAAATTTATGG 58.469 33.333 0.00 0.00 0.00 2.74
2137 2156 8.311109 GTTGGTCTCATTGGTTAAATTTATGGT 58.689 33.333 0.00 0.00 0.00 3.55
2138 2157 8.062065 TGGTCTCATTGGTTAAATTTATGGTC 57.938 34.615 0.00 0.00 0.00 4.02
2139 2158 7.671819 TGGTCTCATTGGTTAAATTTATGGTCA 59.328 33.333 0.00 0.00 0.00 4.02
2140 2159 8.527810 GGTCTCATTGGTTAAATTTATGGTCAA 58.472 33.333 0.00 2.87 0.00 3.18
2141 2160 9.921637 GTCTCATTGGTTAAATTTATGGTCAAA 57.078 29.630 0.00 0.00 0.00 2.69
2143 2162 9.927668 CTCATTGGTTAAATTTATGGTCAAAGT 57.072 29.630 0.00 0.00 0.00 2.66
2148 2167 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
2149 2168 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
2150 2169 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
2151 2170 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
2152 2171 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
2153 2172 1.961793 TGGTCAAAGTTGAACCTCGG 58.038 50.000 6.62 0.00 44.20 4.63
2154 2173 1.487142 TGGTCAAAGTTGAACCTCGGA 59.513 47.619 6.62 0.00 44.20 4.55
2155 2174 2.092861 TGGTCAAAGTTGAACCTCGGAA 60.093 45.455 6.62 0.00 44.20 4.30
2156 2175 2.946990 GGTCAAAGTTGAACCTCGGAAA 59.053 45.455 0.00 0.00 38.96 3.13
2157 2176 3.003378 GGTCAAAGTTGAACCTCGGAAAG 59.997 47.826 0.00 0.00 38.96 2.62
2158 2177 2.616842 TCAAAGTTGAACCTCGGAAAGC 59.383 45.455 0.00 0.00 33.55 3.51
2159 2178 1.226746 AAGTTGAACCTCGGAAAGCG 58.773 50.000 0.00 0.00 0.00 4.68
2160 2179 0.106149 AGTTGAACCTCGGAAAGCGT 59.894 50.000 0.00 0.00 0.00 5.07
2161 2180 0.234884 GTTGAACCTCGGAAAGCGTG 59.765 55.000 0.00 0.00 0.00 5.34
2162 2181 0.882927 TTGAACCTCGGAAAGCGTGG 60.883 55.000 0.00 0.00 0.00 4.94
2163 2182 2.032071 AACCTCGGAAAGCGTGGG 59.968 61.111 0.00 0.00 0.00 4.61
2164 2183 4.699522 ACCTCGGAAAGCGTGGGC 62.700 66.667 0.00 0.00 40.37 5.36
2177 2196 2.383298 CGTGGGCGCACTATATTTTG 57.617 50.000 28.52 9.25 0.00 2.44
2178 2197 1.002900 CGTGGGCGCACTATATTTTGG 60.003 52.381 28.52 8.56 0.00 3.28
2179 2198 2.294074 GTGGGCGCACTATATTTTGGA 58.706 47.619 25.28 0.00 0.00 3.53
2180 2199 2.685897 GTGGGCGCACTATATTTTGGAA 59.314 45.455 25.28 0.00 0.00 3.53
2181 2200 3.317993 GTGGGCGCACTATATTTTGGAAT 59.682 43.478 25.28 0.00 0.00 3.01
2182 2201 4.517453 GTGGGCGCACTATATTTTGGAATA 59.483 41.667 25.28 0.00 32.56 1.75
2183 2202 4.759693 TGGGCGCACTATATTTTGGAATAG 59.240 41.667 12.74 0.00 31.58 1.73
2184 2203 5.001232 GGGCGCACTATATTTTGGAATAGA 58.999 41.667 10.83 0.00 31.58 1.98
2185 2204 5.122396 GGGCGCACTATATTTTGGAATAGAG 59.878 44.000 10.83 0.65 40.96 2.43
2186 2205 5.932303 GGCGCACTATATTTTGGAATAGAGA 59.068 40.000 10.83 0.00 38.67 3.10
2234 2253 2.028876 CAGGGATTCATGAAGCATGCA 58.971 47.619 23.99 0.00 41.18 3.96
2308 2330 5.729176 GCTGGTGTGTTTTAAAATTGCAACC 60.729 40.000 0.00 8.61 0.00 3.77
2471 2496 7.983484 CCCTTTTCAGGAAATCTGGATAATTTG 59.017 37.037 0.00 0.00 44.19 2.32
2623 2716 8.474025 TCTTTTGTGAAGAACCACATAACAAAT 58.526 29.630 0.00 0.00 45.31 2.32
2785 2891 7.493367 ACTATTCTGAAGTTATAGCTCCACAC 58.507 38.462 0.00 0.00 0.00 3.82
2974 3080 9.934190 ATTGACAACTACAATTTTTGCAATTTC 57.066 25.926 0.00 0.00 34.86 2.17
3173 3279 2.891580 TGAACGATATGGTAGGAGCTCC 59.108 50.000 26.22 26.22 0.00 4.70
3306 3412 7.332926 AGCAGGATAATTTATAGCTCATTCACG 59.667 37.037 0.00 0.00 0.00 4.35
3349 3455 3.089284 GGTCCAGTATTTCAAACAGGGG 58.911 50.000 0.00 0.00 0.00 4.79
3385 3491 5.711698 TCCAAATTTACTCCCAGTTCCTTT 58.288 37.500 0.00 0.00 0.00 3.11
3410 3516 1.827344 GCCCTGAAAGATTTGAAGGGG 59.173 52.381 18.08 5.24 46.61 4.79
3531 3637 7.631915 AAATTGACGTTTTATCCGGAAAAAG 57.368 32.000 9.01 10.66 34.96 2.27
4054 4168 6.957631 TCCTTCCAATCTAATAAGACAGCAA 58.042 36.000 0.00 0.00 33.57 3.91
4063 4177 7.507829 ATCTAATAAGACAGCAATTGCTCTCT 58.492 34.615 29.81 28.13 46.11 3.10
4119 4233 9.391006 GTCATTGACTGGTGGATAAACTATAAA 57.609 33.333 9.59 0.00 0.00 1.40
4226 4341 5.238214 GGATTCTCACATTGTAGCTGGATTC 59.762 44.000 0.00 0.00 0.00 2.52
4255 4370 5.013079 TGAGATGTGTTGAACCTTCTACCAT 59.987 40.000 0.00 1.94 33.02 3.55
4565 4688 4.481195 GCTGTTGCCTTCCAGACA 57.519 55.556 0.00 0.00 0.00 3.41
4568 4691 1.612726 GCTGTTGCCTTCCAGACATCT 60.613 52.381 0.00 0.00 0.00 2.90
4648 4771 7.771826 GGTACCTAACAAAGATGCCTTGTATAA 59.228 37.037 4.06 0.00 31.91 0.98
4696 4819 3.243334 GCAGGGCTAATTTGCTGATCTTC 60.243 47.826 11.61 0.00 35.05 2.87
4734 4857 1.029947 TGCAGGCTCGTATCGACTCA 61.030 55.000 0.00 0.00 0.00 3.41
4776 4899 1.674322 CCACGCCGACCAAAGGAAT 60.674 57.895 0.00 0.00 0.00 3.01
4821 4944 3.326006 AGACTGGCAATGAGTTTGAGAGA 59.674 43.478 0.00 0.00 37.53 3.10
4926 5049 1.497309 TTCTCCTTGGTTCGGGCCAT 61.497 55.000 4.39 0.00 38.48 4.40
4939 5062 1.458639 GGGCCATAGGTGCATTGAGC 61.459 60.000 4.39 0.00 45.96 4.26
4988 5111 5.121298 AGTCAAGTGTTTCATGTCATGATCG 59.879 40.000 16.19 1.39 39.39 3.69
4989 5112 4.392754 TCAAGTGTTTCATGTCATGATCGG 59.607 41.667 16.19 3.30 39.39 4.18
4990 5113 4.206477 AGTGTTTCATGTCATGATCGGA 57.794 40.909 16.19 0.00 39.39 4.55
5115 5327 7.605410 TCATTTTGGAGTTTTCGTATAGACC 57.395 36.000 0.00 0.00 0.00 3.85
5122 5334 7.270047 TGGAGTTTTCGTATAGACCTATTTGG 58.730 38.462 0.00 0.00 42.93 3.28
5150 5362 2.680841 TGTGCTGTCGCTTTTAACAGTT 59.319 40.909 4.62 0.00 43.82 3.16
5157 5369 6.529463 TGTCGCTTTTAACAGTTTACTACC 57.471 37.500 0.00 0.00 0.00 3.18
5230 5463 3.049912 GGAATCGCTTTGGTTGTGAAAC 58.950 45.455 0.00 0.00 37.35 2.78
5260 5493 1.525077 ACTTGCTTTCGGTGCGGAA 60.525 52.632 0.00 0.00 0.00 4.30
5272 5512 4.230657 TCGGTGCGGAAAAATAAAACATG 58.769 39.130 0.00 0.00 0.00 3.21
5317 5557 1.021202 CTGCACCGACCAGTTTTTGA 58.979 50.000 0.00 0.00 0.00 2.69
5351 5591 3.065925 GGAATCTCAAAGCTGTACCATGC 59.934 47.826 0.00 0.00 0.00 4.06
5352 5592 2.857186 TCTCAAAGCTGTACCATGCA 57.143 45.000 0.00 0.00 0.00 3.96
5353 5593 3.354948 TCTCAAAGCTGTACCATGCAT 57.645 42.857 0.00 0.00 0.00 3.96
5354 5594 3.011818 TCTCAAAGCTGTACCATGCATG 58.988 45.455 20.19 20.19 0.00 4.06
5359 5599 5.066375 TCAAAGCTGTACCATGCATGATAAC 59.934 40.000 28.31 20.47 0.00 1.89
5409 5649 8.665471 AAGATGGATCTGTTTGGCACACAAATA 61.665 37.037 7.98 0.00 42.68 1.40
5419 5659 5.674052 TGGCACACAAATATAAAAGGCAT 57.326 34.783 0.00 0.00 0.00 4.40
5495 5735 3.392769 TCAAACAACCGAACGAAACAG 57.607 42.857 0.00 0.00 0.00 3.16
5539 5779 7.368833 GGTGTAATTCGTCATATAGCAGTACT 58.631 38.462 0.00 0.00 0.00 2.73
5540 5780 7.537991 GGTGTAATTCGTCATATAGCAGTACTC 59.462 40.741 0.00 0.00 0.00 2.59
5541 5781 8.074370 GTGTAATTCGTCATATAGCAGTACTCA 58.926 37.037 0.00 0.00 0.00 3.41
5542 5782 8.793592 TGTAATTCGTCATATAGCAGTACTCAT 58.206 33.333 0.00 0.00 0.00 2.90
5633 5873 1.615392 AGTTGCTTGCTCCCATTTCAC 59.385 47.619 0.00 0.00 0.00 3.18
5776 6016 1.472878 AGCAATGCAGCATCAGTCAAG 59.527 47.619 8.77 0.00 36.85 3.02
5801 6041 0.035343 GTCCAGAGCCCACCTAAACC 60.035 60.000 0.00 0.00 0.00 3.27
5815 6055 4.642885 CACCTAAACCCAACTCAACAAGAA 59.357 41.667 0.00 0.00 0.00 2.52
5977 6217 2.398429 CGCATGAGCAGCACGAAG 59.602 61.111 0.00 0.00 42.27 3.79
6118 6358 3.186047 CATTCCGGCCACGTCGAC 61.186 66.667 5.18 5.18 38.78 4.20
6149 6389 2.325761 ACTCGACGGATTTTCAGAACG 58.674 47.619 0.00 0.00 0.00 3.95
6152 6392 2.984471 TCGACGGATTTTCAGAACGAAG 59.016 45.455 0.00 0.00 34.32 3.79
6154 6394 3.916172 CGACGGATTTTCAGAACGAAGTA 59.084 43.478 0.00 0.00 45.00 2.24
6155 6395 4.201466 CGACGGATTTTCAGAACGAAGTAC 60.201 45.833 0.00 0.00 45.00 2.73
6161 6401 2.724977 TCAGAACGAAGTACTGCTGG 57.275 50.000 0.00 0.00 45.00 4.85
6162 6402 1.961394 TCAGAACGAAGTACTGCTGGT 59.039 47.619 0.00 0.00 45.00 4.00
6163 6403 2.061773 CAGAACGAAGTACTGCTGGTG 58.938 52.381 0.00 0.00 45.00 4.17
6164 6404 0.790814 GAACGAAGTACTGCTGGTGC 59.209 55.000 0.00 0.00 45.00 5.01
6165 6405 0.393077 AACGAAGTACTGCTGGTGCT 59.607 50.000 0.00 0.00 45.00 4.40
6166 6406 0.319900 ACGAAGTACTGCTGGTGCTG 60.320 55.000 0.00 0.00 41.94 4.41
6167 6407 1.630244 CGAAGTACTGCTGGTGCTGC 61.630 60.000 0.00 0.00 39.91 5.25
6168 6408 0.321122 GAAGTACTGCTGGTGCTGCT 60.321 55.000 0.00 0.00 39.91 4.24
6169 6409 0.976641 AAGTACTGCTGGTGCTGCTA 59.023 50.000 0.00 0.00 39.91 3.49
6170 6410 0.247736 AGTACTGCTGGTGCTGCTAC 59.752 55.000 0.00 0.00 39.36 3.58
6171 6411 0.741221 GTACTGCTGGTGCTGCTACC 60.741 60.000 12.44 12.44 41.07 3.18
6172 6412 2.225791 TACTGCTGGTGCTGCTACCG 62.226 60.000 13.83 10.61 43.87 4.02
6174 6414 4.767255 GCTGGTGCTGCTACCGCT 62.767 66.667 19.44 0.00 43.87 5.52
6175 6415 2.816958 CTGGTGCTGCTACCGCTG 60.817 66.667 13.83 5.89 43.87 5.18
6184 6424 1.869774 TGCTACCGCTGCAGAATATG 58.130 50.000 20.43 4.98 35.31 1.78
6185 6425 1.138859 TGCTACCGCTGCAGAATATGT 59.861 47.619 20.43 8.48 35.31 2.29
6186 6426 1.528586 GCTACCGCTGCAGAATATGTG 59.471 52.381 20.43 0.00 0.00 3.21
6187 6427 1.528586 CTACCGCTGCAGAATATGTGC 59.471 52.381 20.43 0.00 41.59 4.57
6195 6435 4.642445 TGCAGAATATGTGCAGAATTGG 57.358 40.909 8.58 0.00 45.96 3.16
6196 6436 4.018490 TGCAGAATATGTGCAGAATTGGT 58.982 39.130 8.58 0.00 45.96 3.67
6197 6437 4.463539 TGCAGAATATGTGCAGAATTGGTT 59.536 37.500 8.58 0.00 45.96 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.086765 CGCACAACAAGAAGCAAAATAAGTAG 59.913 38.462 0.00 0.00 0.00 2.57
49 50 3.006430 ACCCAAAAGAAAAACATAGCCCG 59.994 43.478 0.00 0.00 0.00 6.13
55 56 7.374272 CCAAACAAAACCCAAAAGAAAAACAT 58.626 30.769 0.00 0.00 0.00 2.71
63 64 3.755905 ACTTGCCAAACAAAACCCAAAAG 59.244 39.130 0.00 0.00 37.96 2.27
167 178 9.844257 AAAATATGGATTTGAAAAAGGTTCACA 57.156 25.926 0.00 0.00 35.38 3.58
462 477 7.488322 TCAAAGAAACTTCACGGATTTGAAAT 58.512 30.769 0.00 0.00 35.07 2.17
561 578 7.042590 TGACTTTAAAACAGTTCGCGAATCTAA 60.043 33.333 26.23 12.66 0.00 2.10
562 579 6.421501 TGACTTTAAAACAGTTCGCGAATCTA 59.578 34.615 26.23 0.00 0.00 1.98
591 609 6.477360 CGGTTGCCAGTGTTTTAAAGTATTTT 59.523 34.615 0.00 0.00 40.09 1.82
592 610 5.980715 CGGTTGCCAGTGTTTTAAAGTATTT 59.019 36.000 0.00 0.00 43.42 1.40
676 694 6.148811 CCTCGCTTGTCCTTTTGTTTCTATTA 59.851 38.462 0.00 0.00 0.00 0.98
679 697 3.813166 CCTCGCTTGTCCTTTTGTTTCTA 59.187 43.478 0.00 0.00 0.00 2.10
685 703 0.239347 CAGCCTCGCTTGTCCTTTTG 59.761 55.000 0.00 0.00 36.40 2.44
689 707 3.710722 CCCAGCCTCGCTTGTCCT 61.711 66.667 0.00 0.00 36.40 3.85
712 730 1.432251 CGATGGTCGGTAACTCGCT 59.568 57.895 0.00 0.00 36.00 4.93
774 792 0.535797 GTAGCGCCACTTACCTTCCT 59.464 55.000 2.29 0.00 0.00 3.36
810 828 4.505039 GGAAATCAGGCCCGTAGAACATAT 60.505 45.833 0.00 0.00 0.00 1.78
828 846 0.403271 AGTGTGGCAGAGCAGGAAAT 59.597 50.000 0.00 0.00 0.00 2.17
854 872 2.565834 GCTAGACCTTATATCGGCCCAA 59.434 50.000 0.00 0.00 0.00 4.12
869 887 1.226717 CGCCACCTTCTCGCTAGAC 60.227 63.158 0.00 0.00 0.00 2.59
967 986 1.517694 TCTGTAAATCCGCGTCCGC 60.518 57.895 4.92 0.68 37.85 5.54
969 988 0.108520 TGGTCTGTAAATCCGCGTCC 60.109 55.000 4.92 0.00 0.00 4.79
971 990 1.435577 GTTGGTCTGTAAATCCGCGT 58.564 50.000 4.92 0.00 0.00 6.01
1011 1030 4.785376 AGATAGAGGTGGACTTGGTTTGAT 59.215 41.667 0.00 0.00 0.00 2.57
1179 1198 2.585247 GCGTACGCCTCCATGTCC 60.585 66.667 29.51 0.00 34.56 4.02
1226 1245 2.279784 CGATGAAGAGGAGCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
1471 1490 1.278413 AGGGAGCGAAGTTTAGGGTTC 59.722 52.381 0.00 0.00 0.00 3.62
1495 1514 8.670135 CGACCATATACAATCCTAAAACAAACA 58.330 33.333 0.00 0.00 0.00 2.83
1508 1527 4.216257 GCAGAAATGGCGACCATATACAAT 59.784 41.667 11.07 0.00 44.40 2.71
1512 1531 3.769739 AGCAGAAATGGCGACCATATA 57.230 42.857 11.07 0.00 44.40 0.86
1514 1533 2.016318 CAAGCAGAAATGGCGACCATA 58.984 47.619 11.07 0.00 44.40 2.74
1516 1535 0.250684 TCAAGCAGAAATGGCGACCA 60.251 50.000 1.01 1.01 38.19 4.02
1517 1536 0.169009 GTCAAGCAGAAATGGCGACC 59.831 55.000 0.00 0.00 36.08 4.79
1573 1592 3.176552 CAGATTGGTCTGCAGGTAGAG 57.823 52.381 15.13 0.00 44.86 2.43
1819 1838 1.539496 GGCGGCAGTAATACGATCCAA 60.539 52.381 3.07 0.00 0.00 3.53
1826 1845 1.202143 GCAACTTGGCGGCAGTAATAC 60.202 52.381 12.87 0.00 0.00 1.89
1951 1970 3.053395 ACATTGTGGAATGCAGGGAGTAT 60.053 43.478 0.00 0.00 42.54 2.12
1952 1971 2.308570 ACATTGTGGAATGCAGGGAGTA 59.691 45.455 0.00 0.00 42.54 2.59
1953 1972 1.076024 ACATTGTGGAATGCAGGGAGT 59.924 47.619 0.00 0.00 42.54 3.85
1954 1973 1.843368 ACATTGTGGAATGCAGGGAG 58.157 50.000 0.00 0.00 42.54 4.30
1955 1974 2.308570 ACTACATTGTGGAATGCAGGGA 59.691 45.455 7.20 0.00 42.54 4.20
1956 1975 2.424601 CACTACATTGTGGAATGCAGGG 59.575 50.000 7.20 0.00 42.54 4.45
1957 1976 2.159338 GCACTACATTGTGGAATGCAGG 60.159 50.000 7.20 0.00 42.54 4.85
1958 1977 2.751259 AGCACTACATTGTGGAATGCAG 59.249 45.455 15.03 0.00 42.54 4.41
1959 1978 2.794103 AGCACTACATTGTGGAATGCA 58.206 42.857 15.03 0.00 42.54 3.96
1960 1979 3.428045 GGAAGCACTACATTGTGGAATGC 60.428 47.826 7.20 7.33 42.54 3.56
1961 1980 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
1962 1981 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
1963 1982 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
1964 1983 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
1965 1984 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
1966 1985 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
1967 1986 4.101741 GGGATAGAGGAAGCACTACATTGT 59.898 45.833 0.00 0.00 0.00 2.71
1968 1987 4.503991 GGGGATAGAGGAAGCACTACATTG 60.504 50.000 0.00 0.00 0.00 2.82
1969 1988 3.648545 GGGGATAGAGGAAGCACTACATT 59.351 47.826 0.00 0.00 0.00 2.71
1970 1989 3.243724 GGGGATAGAGGAAGCACTACAT 58.756 50.000 0.00 0.00 0.00 2.29
1971 1990 2.679082 GGGGATAGAGGAAGCACTACA 58.321 52.381 0.00 0.00 0.00 2.74
1972 1991 1.614413 CGGGGATAGAGGAAGCACTAC 59.386 57.143 0.00 0.00 0.00 2.73
1973 1992 1.217183 ACGGGGATAGAGGAAGCACTA 59.783 52.381 0.00 0.00 0.00 2.74
1974 1993 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.00 0.00 4.40
1975 1994 0.105039 CACGGGGATAGAGGAAGCAC 59.895 60.000 0.00 0.00 0.00 4.40
1976 1995 1.686325 GCACGGGGATAGAGGAAGCA 61.686 60.000 0.00 0.00 0.00 3.91
1977 1996 1.069935 GCACGGGGATAGAGGAAGC 59.930 63.158 0.00 0.00 0.00 3.86
1978 1997 1.069358 GAAGCACGGGGATAGAGGAAG 59.931 57.143 0.00 0.00 0.00 3.46
1979 1998 1.120530 GAAGCACGGGGATAGAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
1980 1999 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
1981 2000 0.830648 TTGAAGCACGGGGATAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
1982 2001 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
1983 2002 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
1984 2003 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
1985 2004 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
1986 2005 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
1987 2006 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
1988 2007 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
1989 2008 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
1990 2009 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
1991 2010 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
1992 2011 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
1993 2012 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
1994 2013 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
1996 2015 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
1997 2016 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
1998 2017 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
1999 2018 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
2000 2019 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
2001 2020 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
2002 2021 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
2003 2022 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
2004 2023 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
2005 2024 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
2006 2025 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
2007 2026 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
2008 2027 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
2009 2028 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
2010 2029 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
2011 2030 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
2012 2031 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
2013 2032 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
2014 2033 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
2015 2034 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
2016 2035 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
2017 2036 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
2018 2037 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
2030 2049 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
2031 2050 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
2032 2051 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
2033 2052 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
2034 2053 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
2035 2054 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
2036 2055 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
2037 2056 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
2038 2057 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
2039 2058 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
2054 2073 9.388506 ACTTCTTTCGAATATGAATTCACTGAT 57.611 29.630 11.07 1.88 41.44 2.90
2055 2074 8.777865 ACTTCTTTCGAATATGAATTCACTGA 57.222 30.769 11.07 0.00 41.44 3.41
2056 2075 9.831737 AAACTTCTTTCGAATATGAATTCACTG 57.168 29.630 11.07 0.00 41.44 3.66
2081 2100 9.974980 GGCGGGAGAAAAATTATATAATTGAAA 57.025 29.630 19.08 0.00 36.14 2.69
2082 2101 8.293867 CGGCGGGAGAAAAATTATATAATTGAA 58.706 33.333 19.08 0.00 36.14 2.69
2083 2102 7.574217 GCGGCGGGAGAAAAATTATATAATTGA 60.574 37.037 19.08 0.00 36.14 2.57
2084 2103 6.526674 GCGGCGGGAGAAAAATTATATAATTG 59.473 38.462 19.08 7.31 36.14 2.32
2085 2104 6.207810 TGCGGCGGGAGAAAAATTATATAATT 59.792 34.615 13.85 13.85 37.49 1.40
2086 2105 5.708230 TGCGGCGGGAGAAAAATTATATAAT 59.292 36.000 9.78 1.91 0.00 1.28
2087 2106 5.064558 TGCGGCGGGAGAAAAATTATATAA 58.935 37.500 9.78 0.00 0.00 0.98
2088 2107 4.643463 TGCGGCGGGAGAAAAATTATATA 58.357 39.130 9.78 0.00 0.00 0.86
2089 2108 3.482436 TGCGGCGGGAGAAAAATTATAT 58.518 40.909 9.78 0.00 0.00 0.86
2090 2109 2.875933 CTGCGGCGGGAGAAAAATTATA 59.124 45.455 9.78 0.00 32.53 0.98
2091 2110 1.676006 CTGCGGCGGGAGAAAAATTAT 59.324 47.619 9.78 0.00 32.53 1.28
2092 2111 1.091537 CTGCGGCGGGAGAAAAATTA 58.908 50.000 9.78 0.00 32.53 1.40
2093 2112 0.893727 ACTGCGGCGGGAGAAAAATT 60.894 50.000 19.55 0.00 35.29 1.82
2094 2113 0.893727 AACTGCGGCGGGAGAAAAAT 60.894 50.000 19.55 0.00 35.29 1.82
2095 2114 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
2096 2115 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
2097 2116 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
2098 2117 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
2103 2122 3.958147 ATGAGACCAACTGCGGCGG 62.958 63.158 9.78 7.39 0.00 6.13
2104 2123 2.034879 AATGAGACCAACTGCGGCG 61.035 57.895 0.51 0.51 0.00 6.46
2105 2124 1.503542 CAATGAGACCAACTGCGGC 59.496 57.895 0.00 0.00 0.00 6.53
2106 2125 0.606401 ACCAATGAGACCAACTGCGG 60.606 55.000 0.00 0.00 0.00 5.69
2107 2126 1.238439 AACCAATGAGACCAACTGCG 58.762 50.000 0.00 0.00 0.00 5.18
2108 2127 4.846779 TTTAACCAATGAGACCAACTGC 57.153 40.909 0.00 0.00 0.00 4.40
2109 2128 9.357652 CATAAATTTAACCAATGAGACCAACTG 57.642 33.333 1.21 0.00 0.00 3.16
2110 2129 8.531146 CCATAAATTTAACCAATGAGACCAACT 58.469 33.333 1.21 0.00 0.00 3.16
2111 2130 8.311109 ACCATAAATTTAACCAATGAGACCAAC 58.689 33.333 1.21 0.00 0.00 3.77
2112 2131 8.429237 ACCATAAATTTAACCAATGAGACCAA 57.571 30.769 1.21 0.00 0.00 3.67
2113 2132 7.671819 TGACCATAAATTTAACCAATGAGACCA 59.328 33.333 1.21 0.00 0.00 4.02
2114 2133 8.062065 TGACCATAAATTTAACCAATGAGACC 57.938 34.615 1.21 0.00 0.00 3.85
2115 2134 9.921637 TTTGACCATAAATTTAACCAATGAGAC 57.078 29.630 1.21 0.00 0.00 3.36
2117 2136 9.927668 ACTTTGACCATAAATTTAACCAATGAG 57.072 29.630 1.21 3.35 0.00 2.90
2122 2141 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
2123 2142 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
2124 2143 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
2125 2144 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
2126 2145 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
2127 2146 7.145323 CGAGGTTCAACTTTGACCATAAATTT 58.855 34.615 0.00 0.00 36.83 1.82
2128 2147 6.294508 CCGAGGTTCAACTTTGACCATAAATT 60.295 38.462 11.01 0.00 36.83 1.82
2129 2148 5.183140 CCGAGGTTCAACTTTGACCATAAAT 59.817 40.000 11.01 0.00 36.83 1.40
2130 2149 4.517453 CCGAGGTTCAACTTTGACCATAAA 59.483 41.667 11.01 0.00 36.83 1.40
2131 2150 4.069304 CCGAGGTTCAACTTTGACCATAA 58.931 43.478 11.01 0.00 36.83 1.90
2132 2151 3.325425 TCCGAGGTTCAACTTTGACCATA 59.675 43.478 11.01 0.00 36.83 2.74
2133 2152 2.105821 TCCGAGGTTCAACTTTGACCAT 59.894 45.455 11.01 0.00 36.83 3.55
2134 2153 1.487142 TCCGAGGTTCAACTTTGACCA 59.513 47.619 11.01 0.00 36.83 4.02
2135 2154 2.249844 TCCGAGGTTCAACTTTGACC 57.750 50.000 0.00 0.00 36.83 4.02
2136 2155 3.548214 GCTTTCCGAGGTTCAACTTTGAC 60.548 47.826 0.00 0.00 36.83 3.18
2137 2156 2.616842 GCTTTCCGAGGTTCAACTTTGA 59.383 45.455 0.00 0.00 34.92 2.69
2138 2157 2.602217 CGCTTTCCGAGGTTCAACTTTG 60.602 50.000 0.00 0.00 40.02 2.77
2139 2158 1.602377 CGCTTTCCGAGGTTCAACTTT 59.398 47.619 0.00 0.00 40.02 2.66
2140 2159 1.226746 CGCTTTCCGAGGTTCAACTT 58.773 50.000 0.00 0.00 40.02 2.66
2141 2160 0.106149 ACGCTTTCCGAGGTTCAACT 59.894 50.000 0.00 0.00 41.02 3.16
2142 2161 0.234884 CACGCTTTCCGAGGTTCAAC 59.765 55.000 0.00 0.00 41.02 3.18
2143 2162 0.882927 CCACGCTTTCCGAGGTTCAA 60.883 55.000 0.00 0.00 41.93 2.69
2144 2163 1.301401 CCACGCTTTCCGAGGTTCA 60.301 57.895 0.00 0.00 41.93 3.18
2145 2164 2.033194 CCCACGCTTTCCGAGGTTC 61.033 63.158 0.00 0.00 44.85 3.62
2146 2165 2.032071 CCCACGCTTTCCGAGGTT 59.968 61.111 0.00 0.00 44.85 3.50
2147 2166 4.699522 GCCCACGCTTTCCGAGGT 62.700 66.667 0.00 0.00 44.85 3.85
2158 2177 1.002900 CCAAAATATAGTGCGCCCACG 60.003 52.381 4.18 0.00 46.62 4.94
2159 2178 2.294074 TCCAAAATATAGTGCGCCCAC 58.706 47.619 4.18 0.00 42.39 4.61
2160 2179 2.719531 TCCAAAATATAGTGCGCCCA 57.280 45.000 4.18 0.00 0.00 5.36
2161 2180 5.001232 TCTATTCCAAAATATAGTGCGCCC 58.999 41.667 4.18 0.00 0.00 6.13
2162 2181 5.932303 TCTCTATTCCAAAATATAGTGCGCC 59.068 40.000 4.18 0.00 0.00 6.53
2163 2182 6.647067 ACTCTCTATTCCAAAATATAGTGCGC 59.353 38.462 0.00 0.00 0.00 6.09
2164 2183 9.862371 ATACTCTCTATTCCAAAATATAGTGCG 57.138 33.333 0.00 0.00 0.00 5.34
2172 2191 9.449719 AACACGAAATACTCTCTATTCCAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
2173 2192 8.717821 CAACACGAAATACTCTCTATTCCAAAA 58.282 33.333 0.00 0.00 0.00 2.44
2174 2193 7.148474 GCAACACGAAATACTCTCTATTCCAAA 60.148 37.037 0.00 0.00 0.00 3.28
2175 2194 6.312918 GCAACACGAAATACTCTCTATTCCAA 59.687 38.462 0.00 0.00 0.00 3.53
2176 2195 5.810587 GCAACACGAAATACTCTCTATTCCA 59.189 40.000 0.00 0.00 0.00 3.53
2177 2196 6.043411 AGCAACACGAAATACTCTCTATTCC 58.957 40.000 0.00 0.00 0.00 3.01
2178 2197 7.701078 TGTAGCAACACGAAATACTCTCTATTC 59.299 37.037 0.00 0.00 0.00 1.75
2179 2198 7.544622 TGTAGCAACACGAAATACTCTCTATT 58.455 34.615 0.00 0.00 0.00 1.73
2180 2199 7.096884 TGTAGCAACACGAAATACTCTCTAT 57.903 36.000 0.00 0.00 0.00 1.98
2181 2200 6.505044 TGTAGCAACACGAAATACTCTCTA 57.495 37.500 0.00 0.00 0.00 2.43
2182 2201 5.386958 TGTAGCAACACGAAATACTCTCT 57.613 39.130 0.00 0.00 0.00 3.10
2183 2202 6.020281 CAGATGTAGCAACACGAAATACTCTC 60.020 42.308 0.00 0.00 38.78 3.20
2184 2203 5.807520 CAGATGTAGCAACACGAAATACTCT 59.192 40.000 0.00 0.00 38.78 3.24
2185 2204 5.577164 ACAGATGTAGCAACACGAAATACTC 59.423 40.000 0.00 0.00 38.78 2.59
2186 2205 5.479306 ACAGATGTAGCAACACGAAATACT 58.521 37.500 0.00 0.00 38.78 2.12
2234 2253 8.695456 AGTTCAAAGTTCCAACAGATTAAATGT 58.305 29.630 0.00 0.00 0.00 2.71
2308 2330 3.242413 CCGAAATCTCCAATAGCACAACG 60.242 47.826 0.00 0.00 0.00 4.10
2408 2430 7.797062 TGACAAACATAGCAATGTACCCTATA 58.203 34.615 0.00 0.00 45.79 1.31
2409 2431 6.658849 TGACAAACATAGCAATGTACCCTAT 58.341 36.000 0.00 0.00 45.79 2.57
2500 2529 4.258543 AGTTTTGTCGTGAGAAAAGGACA 58.741 39.130 5.29 0.00 45.01 4.02
2785 2891 1.328680 GCACCATAGACAGCAACATCG 59.671 52.381 0.00 0.00 0.00 3.84
2906 3012 9.305925 CAAATGAGGAAATTAATCTGGTTTAGC 57.694 33.333 0.00 0.00 0.00 3.09
2966 3072 3.255642 GGCACTAACTCCAAGAAATTGCA 59.744 43.478 0.00 0.00 0.00 4.08
2974 3080 3.409026 ACTTCAGGCACTAACTCCAAG 57.591 47.619 0.00 0.00 36.02 3.61
3032 3138 3.969976 AGCACTTGCATCCTAGATTCCTA 59.030 43.478 3.62 0.00 45.16 2.94
3033 3139 2.776536 AGCACTTGCATCCTAGATTCCT 59.223 45.455 3.62 0.00 45.16 3.36
3034 3140 2.877168 CAGCACTTGCATCCTAGATTCC 59.123 50.000 3.62 0.00 45.16 3.01
3173 3279 4.501571 CCCCATCTGTTATGTAGAAGACCG 60.502 50.000 0.00 0.00 0.00 4.79
3306 3412 8.929746 GGACCAACTGTATACTACTAAAACAAC 58.070 37.037 4.17 0.00 0.00 3.32
3385 3491 4.772100 CCTTCAAATCTTTCAGGGCCTAAA 59.228 41.667 5.28 0.00 0.00 1.85
3410 3516 1.604438 GCAAACCGGGACCAAAATGAC 60.604 52.381 6.32 0.00 0.00 3.06
3451 3557 1.406539 CCACCTGCCTATGATGCAAAC 59.593 52.381 0.00 0.00 38.46 2.93
3523 3629 4.670227 TTTTTGTGCCAAACTTTTTCCG 57.330 36.364 0.52 0.00 0.00 4.30
3531 3637 5.331098 CAAACTTCCATTTTTGTGCCAAAC 58.669 37.500 0.52 0.00 0.00 2.93
3553 3659 7.093245 GCTAAAATAACTATTTTTGGGTCCCCA 60.093 37.037 5.13 0.00 41.64 4.96
3942 4051 1.619654 CAACAGGGTTTGAGCATGGA 58.380 50.000 0.00 0.00 30.93 3.41
4054 4168 3.484407 AGTGACAAGCAAAGAGAGCAAT 58.516 40.909 0.00 0.00 0.00 3.56
4063 4177 2.090760 TCAGTGCAAGTGACAAGCAAA 58.909 42.857 3.60 0.00 42.42 3.68
4119 4233 5.221541 TGACAGGTTTTTGTTGGTTCAGTTT 60.222 36.000 0.00 0.00 0.00 2.66
4226 4341 7.621428 AGAAGGTTCAACACATCTCATAATG 57.379 36.000 0.00 0.00 0.00 1.90
4565 4688 2.836636 TCTCTAGCAGGGACACAGAT 57.163 50.000 0.00 0.00 0.00 2.90
4568 4691 2.828520 CTCTTTCTCTAGCAGGGACACA 59.171 50.000 0.00 0.00 0.00 3.72
4696 4819 8.345565 AGCCTGCATATAAATTAAAGAAACGAG 58.654 33.333 0.00 0.00 0.00 4.18
4734 4857 5.163854 GCTTGCGTATAGAATCTTGTTGTGT 60.164 40.000 0.00 0.00 0.00 3.72
4821 4944 3.262660 TCAGAAGCATGGACTTGACATCT 59.737 43.478 0.00 0.00 0.00 2.90
4926 5049 4.332543 CACTAAAATCGCTCAATGCACCTA 59.667 41.667 0.00 0.00 43.06 3.08
4939 5062 4.033932 TGGCACGAATCATCACTAAAATCG 59.966 41.667 0.00 0.00 35.16 3.34
5025 5171 1.218047 GACGTGCATGGCAGGAGTA 59.782 57.895 16.65 0.00 45.68 2.59
5076 5222 7.397192 ACTCCAAAATGAATGCCAGTAATAAGT 59.603 33.333 0.00 0.00 0.00 2.24
5078 5224 7.716799 ACTCCAAAATGAATGCCAGTAATAA 57.283 32.000 0.00 0.00 0.00 1.40
5080 5226 6.610075 AACTCCAAAATGAATGCCAGTAAT 57.390 33.333 0.00 0.00 0.00 1.89
5081 5227 6.418057 AAACTCCAAAATGAATGCCAGTAA 57.582 33.333 0.00 0.00 0.00 2.24
5115 5327 4.611355 CGACAGCACACAAACTCCAAATAG 60.611 45.833 0.00 0.00 0.00 1.73
5122 5334 4.901627 GCGACAGCACACAAACTC 57.098 55.556 0.00 0.00 44.35 3.01
5150 5362 2.507547 CAAGCGCGGCGGTAGTAA 60.508 61.111 28.08 0.00 36.27 2.24
5230 5463 4.414852 CGAAAGCAAGTGGTAATGAATGG 58.585 43.478 0.00 0.00 0.00 3.16
5272 5512 8.854614 ATTATAGAAATGGCTTCATGTAGGAC 57.145 34.615 1.21 0.00 36.40 3.85
5317 5557 3.228188 TGAGATTCCACAAAGCCAAGT 57.772 42.857 0.00 0.00 0.00 3.16
5409 5649 0.748005 ACAGCGCGGATGCCTTTTAT 60.748 50.000 16.26 0.00 38.08 1.40
5466 5706 5.513495 TCGTTCGGTTGTTTGATTTGAAAAG 59.487 36.000 0.00 0.00 0.00 2.27
5495 5735 0.179092 CCCGGGGTTTACTCGATGAC 60.179 60.000 14.71 0.00 0.00 3.06
5522 5762 6.817140 ACGATATGAGTACTGCTATATGACGA 59.183 38.462 0.00 0.00 0.00 4.20
5539 5779 6.430451 CGCAGATGCTGTATATACGATATGA 58.570 40.000 8.33 0.00 39.32 2.15
5540 5780 5.116225 GCGCAGATGCTGTATATACGATATG 59.884 44.000 0.30 8.45 39.32 1.78
5541 5781 5.215903 GCGCAGATGCTGTATATACGATAT 58.784 41.667 0.30 2.44 39.32 1.63
5542 5782 4.095782 TGCGCAGATGCTGTATATACGATA 59.904 41.667 5.66 0.00 39.32 2.92
5543 5783 3.119495 TGCGCAGATGCTGTATATACGAT 60.119 43.478 5.66 0.63 39.32 3.73
5610 5850 0.883833 AATGGGAGCAAGCAACTTCG 59.116 50.000 0.00 0.00 0.00 3.79
5633 5873 1.523258 CAGATGGAGCTGCGGGAAG 60.523 63.158 0.00 0.00 0.00 3.46
5776 6016 3.706373 TGGGCTCTGGACTTCCGC 61.706 66.667 0.00 0.00 39.43 5.54
5801 6041 4.273480 ACGACATCTTTCTTGTTGAGTTGG 59.727 41.667 0.00 0.00 33.50 3.77
6117 6357 1.269102 CCGTCGAGTTTCTGACACTGT 60.269 52.381 0.39 0.00 34.78 3.55
6118 6358 1.001706 TCCGTCGAGTTTCTGACACTG 60.002 52.381 0.39 0.00 34.78 3.66
6149 6389 0.321122 AGCAGCACCAGCAGTACTTC 60.321 55.000 0.00 0.00 45.49 3.01
6152 6392 0.741221 GGTAGCAGCACCAGCAGTAC 60.741 60.000 8.64 0.00 45.49 2.73
6154 6394 2.348998 GGTAGCAGCACCAGCAGT 59.651 61.111 8.64 0.00 45.49 4.40
6155 6395 2.816958 CGGTAGCAGCACCAGCAG 60.817 66.667 12.71 0.00 45.49 4.24
6166 6406 1.528586 CACATATTCTGCAGCGGTAGC 59.471 52.381 9.47 0.00 45.58 3.58
6167 6407 1.528586 GCACATATTCTGCAGCGGTAG 59.471 52.381 9.47 1.12 34.56 3.18
6168 6408 1.134551 TGCACATATTCTGCAGCGGTA 60.135 47.619 9.47 1.81 39.76 4.02
6169 6409 0.392863 TGCACATATTCTGCAGCGGT 60.393 50.000 9.47 0.00 39.76 5.68
6170 6410 2.396700 TGCACATATTCTGCAGCGG 58.603 52.632 9.47 0.00 39.76 5.52
6174 6414 4.018490 ACCAATTCTGCACATATTCTGCA 58.982 39.130 5.01 5.01 42.42 4.41
6175 6415 4.644103 ACCAATTCTGCACATATTCTGC 57.356 40.909 0.00 0.00 35.03 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.