Multiple sequence alignment - TraesCS1A01G188500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G188500 chr1A 100.000 3731 0 0 1 3731 340412298 340408568 0.000000e+00 6890.0
1 TraesCS1A01G188500 chr1A 95.699 186 6 2 3300 3484 340408806 340408622 7.830000e-77 298.0
2 TraesCS1A01G188500 chr1A 95.699 186 6 2 3493 3677 340408999 340408815 7.830000e-77 298.0
3 TraesCS1A01G188500 chr1A 94.771 153 8 0 343 495 552838115 552838267 4.820000e-59 239.0
4 TraesCS1A01G188500 chr1A 94.667 150 8 0 346 495 45587268 45587417 2.240000e-57 233.0
5 TraesCS1A01G188500 chr1D 95.699 2999 106 13 496 3478 260327421 260330412 0.000000e+00 4802.0
6 TraesCS1A01G188500 chr1D 94.510 255 9 2 3480 3731 260330220 260330472 4.520000e-104 388.0
7 TraesCS1A01G188500 chr1D 91.760 267 13 4 68 333 260327163 260327421 2.740000e-96 363.0
8 TraesCS1A01G188500 chr1B 95.027 2634 110 11 511 3136 352881203 352878583 0.000000e+00 4119.0
9 TraesCS1A01G188500 chr1B 80.505 436 46 21 3013 3434 352878572 352878162 7.830000e-77 298.0
10 TraesCS1A01G188500 chr1B 94.776 134 7 0 3493 3626 352878295 352878162 3.780000e-50 209.0
11 TraesCS1A01G188500 chr1B 84.358 179 11 8 68 239 352881370 352881202 3.860000e-35 159.0
12 TraesCS1A01G188500 chr1B 93.976 83 5 0 3649 3731 352877720 352877638 3.910000e-25 126.0
13 TraesCS1A01G188500 chr1B 93.023 43 2 1 3203 3245 20755096 20755137 1.120000e-05 62.1
14 TraesCS1A01G188500 chr1B 93.023 43 2 1 3203 3245 20778434 20778475 1.120000e-05 62.1
15 TraesCS1A01G188500 chr3D 92.708 1152 54 10 1546 2678 550946565 550945425 0.000000e+00 1635.0
16 TraesCS1A01G188500 chr4D 80.549 1640 276 26 1096 2709 502111034 502109412 0.000000e+00 1221.0
17 TraesCS1A01G188500 chr4B 80.415 1639 280 21 1096 2709 646225235 646223613 0.000000e+00 1210.0
18 TraesCS1A01G188500 chr5A 79.951 1641 284 25 1096 2709 685014235 685012613 0.000000e+00 1166.0
19 TraesCS1A01G188500 chr6B 86.466 798 70 8 1104 1886 664639037 664639811 0.000000e+00 841.0
20 TraesCS1A01G188500 chr3A 83.077 910 59 26 1769 2678 707392809 707391995 0.000000e+00 739.0
21 TraesCS1A01G188500 chr3A 92.478 226 17 0 1479 1704 707393031 707392806 1.290000e-84 324.0
22 TraesCS1A01G188500 chr3A 93.333 135 7 2 1342 1476 707393525 707393393 8.170000e-47 198.0
23 TraesCS1A01G188500 chr5B 98.710 155 1 1 346 500 48861602 48861755 1.320000e-69 274.0
24 TraesCS1A01G188500 chr5B 94.268 157 8 1 343 498 602841830 602841674 4.820000e-59 239.0
25 TraesCS1A01G188500 chr3B 99.338 151 1 0 346 496 40214098 40214248 1.320000e-69 274.0
26 TraesCS1A01G188500 chr6A 98.667 150 2 0 346 495 136546669 136546818 2.210000e-67 267.0
27 TraesCS1A01G188500 chr2B 95.364 151 7 0 345 495 452597579 452597429 1.340000e-59 241.0
28 TraesCS1A01G188500 chr7B 94.805 154 7 1 343 495 577232782 577232629 4.820000e-59 239.0
29 TraesCS1A01G188500 chr7B 94.231 156 8 1 345 499 77430008 77430163 1.730000e-58 237.0
30 TraesCS1A01G188500 chr7D 87.805 82 7 2 1744 1822 520953040 520952959 3.970000e-15 93.5
31 TraesCS1A01G188500 chr2A 90.909 44 4 0 3202 3245 43820709 43820752 4.020000e-05 60.2
32 TraesCS1A01G188500 chr2A 90.909 44 4 0 3202 3245 43844946 43844989 4.020000e-05 60.2
33 TraesCS1A01G188500 chr2A 90.909 44 4 0 3202 3245 43902923 43902966 4.020000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G188500 chr1A 340408568 340412298 3730 True 2495.333333 6890 97.132667 1 3731 3 chr1A.!!$R1 3730
1 TraesCS1A01G188500 chr1D 260327163 260330472 3309 False 1851.000000 4802 93.989667 68 3731 3 chr1D.!!$F1 3663
2 TraesCS1A01G188500 chr1B 352877638 352881370 3732 True 982.200000 4119 89.728400 68 3731 5 chr1B.!!$R1 3663
3 TraesCS1A01G188500 chr3D 550945425 550946565 1140 True 1635.000000 1635 92.708000 1546 2678 1 chr3D.!!$R1 1132
4 TraesCS1A01G188500 chr4D 502109412 502111034 1622 True 1221.000000 1221 80.549000 1096 2709 1 chr4D.!!$R1 1613
5 TraesCS1A01G188500 chr4B 646223613 646225235 1622 True 1210.000000 1210 80.415000 1096 2709 1 chr4B.!!$R1 1613
6 TraesCS1A01G188500 chr5A 685012613 685014235 1622 True 1166.000000 1166 79.951000 1096 2709 1 chr5A.!!$R1 1613
7 TraesCS1A01G188500 chr6B 664639037 664639811 774 False 841.000000 841 86.466000 1104 1886 1 chr6B.!!$F1 782
8 TraesCS1A01G188500 chr3A 707391995 707393525 1530 True 420.333333 739 89.629333 1342 2678 3 chr3A.!!$R1 1336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 267 0.109342 CAGCCCCTCTAATGCCGAAT 59.891 55.0 0.00 0.0 0.00 3.34 F
455 463 0.247814 CGTTCAATCAGCCATCGTGC 60.248 55.0 0.00 0.0 0.00 5.34 F
812 823 0.322648 AAAGCAATGGAAAGGCCTGC 59.677 50.0 5.69 3.9 37.94 4.85 F
1542 1924 0.677731 TGCTCGCTAGGCTGCAAATT 60.678 50.0 0.50 0.0 34.23 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1468 0.109272 GAACCGTCGCATCTGACAGA 60.109 55.000 7.80 7.8 38.84 3.41 R
1698 2088 1.963338 AAGCAAGCAGAGCACGGTC 60.963 57.895 0.00 0.0 0.00 4.79 R
2721 3149 3.438434 GCTTCTCCTTGCTTTACTTCCTG 59.562 47.826 0.00 0.0 0.00 3.86 R
3392 3976 0.034896 TTGCCGGAGACTGACCTTTC 59.965 55.000 5.05 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.434018 TTTGCCTTTTTCTTTTTCACATGG 57.566 33.333 0.00 0.00 0.00 3.66
48 49 3.876320 TGCCTTTTTCTTTTTCACATGGC 59.124 39.130 0.00 0.00 37.38 4.40
49 50 3.876320 GCCTTTTTCTTTTTCACATGGCA 59.124 39.130 0.00 0.00 36.91 4.92
50 51 4.516321 GCCTTTTTCTTTTTCACATGGCAT 59.484 37.500 0.00 0.00 36.91 4.40
51 52 5.561339 GCCTTTTTCTTTTTCACATGGCATG 60.561 40.000 25.31 25.31 36.91 4.06
52 53 5.421212 TTTTTCTTTTTCACATGGCATGC 57.579 34.783 26.70 9.90 0.00 4.06
53 54 3.747854 TTCTTTTTCACATGGCATGCA 57.252 38.095 26.70 11.42 0.00 3.96
54 55 3.306917 TCTTTTTCACATGGCATGCAG 57.693 42.857 26.70 19.12 0.00 4.41
55 56 1.730064 CTTTTTCACATGGCATGCAGC 59.270 47.619 26.70 3.15 44.65 5.25
56 57 0.970640 TTTTCACATGGCATGCAGCT 59.029 45.000 26.70 4.85 44.79 4.24
57 58 0.970640 TTTCACATGGCATGCAGCTT 59.029 45.000 26.70 4.45 44.79 3.74
58 59 0.970640 TTCACATGGCATGCAGCTTT 59.029 45.000 26.70 3.66 44.79 3.51
59 60 0.970640 TCACATGGCATGCAGCTTTT 59.029 45.000 26.70 2.87 44.79 2.27
60 61 1.345089 TCACATGGCATGCAGCTTTTT 59.655 42.857 26.70 2.08 44.79 1.94
61 62 1.463056 CACATGGCATGCAGCTTTTTG 59.537 47.619 26.70 11.31 44.79 2.44
62 63 1.083489 CATGGCATGCAGCTTTTTGG 58.917 50.000 21.36 0.00 44.79 3.28
63 64 0.978151 ATGGCATGCAGCTTTTTGGA 59.022 45.000 21.36 0.00 44.79 3.53
64 65 0.319083 TGGCATGCAGCTTTTTGGAG 59.681 50.000 21.36 0.00 44.79 3.86
65 66 0.390735 GGCATGCAGCTTTTTGGAGG 60.391 55.000 21.36 0.00 44.79 4.30
66 67 0.390735 GCATGCAGCTTTTTGGAGGG 60.391 55.000 14.21 0.00 41.15 4.30
207 215 3.000423 GCTTAAGATCGCGAACTTTCCTC 60.000 47.826 32.15 15.48 0.00 3.71
219 227 2.111999 CTTTCCTCAGACGGCACCCA 62.112 60.000 0.00 0.00 0.00 4.51
259 267 0.109342 CAGCCCCTCTAATGCCGAAT 59.891 55.000 0.00 0.00 0.00 3.34
267 275 3.374058 CCTCTAATGCCGAATCAAACGTT 59.626 43.478 0.00 0.00 0.00 3.99
268 276 4.494199 CCTCTAATGCCGAATCAAACGTTC 60.494 45.833 0.00 0.00 0.00 3.95
269 277 3.997681 TCTAATGCCGAATCAAACGTTCA 59.002 39.130 0.00 0.00 0.00 3.18
272 280 2.722071 TGCCGAATCAAACGTTCAAAC 58.278 42.857 0.00 0.00 0.00 2.93
275 283 3.548268 GCCGAATCAAACGTTCAAACAAA 59.452 39.130 0.00 0.00 0.00 2.83
280 288 6.136846 CGAATCAAACGTTCAAACAAAATTGC 59.863 34.615 0.00 0.00 0.00 3.56
295 303 8.436046 AACAAAATTGCTTAGAAGAAAATGCA 57.564 26.923 0.00 0.00 0.00 3.96
308 316 4.687215 ATGCACGCGCCAGTCTGT 62.687 61.111 5.73 0.00 37.32 3.41
334 342 3.853831 TGCTTGGAAGTAACATGCATG 57.146 42.857 25.09 25.09 41.96 4.06
335 343 2.094597 TGCTTGGAAGTAACATGCATGC 60.095 45.455 26.53 11.82 41.96 4.06
336 344 2.094597 GCTTGGAAGTAACATGCATGCA 60.095 45.455 26.53 25.04 38.55 3.96
337 345 3.766151 CTTGGAAGTAACATGCATGCAG 58.234 45.455 26.69 19.15 0.00 4.41
338 346 3.070476 TGGAAGTAACATGCATGCAGA 57.930 42.857 26.69 9.11 0.00 4.26
339 347 3.011818 TGGAAGTAACATGCATGCAGAG 58.988 45.455 26.69 22.00 0.00 3.35
340 348 2.223433 GGAAGTAACATGCATGCAGAGC 60.223 50.000 26.69 13.47 0.00 4.09
341 349 1.386533 AGTAACATGCATGCAGAGCC 58.613 50.000 26.69 12.19 0.00 4.70
342 350 1.097232 GTAACATGCATGCAGAGCCA 58.903 50.000 26.69 9.38 0.00 4.75
343 351 1.473677 GTAACATGCATGCAGAGCCAA 59.526 47.619 26.69 6.34 0.00 4.52
344 352 0.970640 AACATGCATGCAGAGCCAAA 59.029 45.000 26.69 0.00 0.00 3.28
345 353 0.530744 ACATGCATGCAGAGCCAAAG 59.469 50.000 26.69 9.99 0.00 2.77
346 354 0.815095 CATGCATGCAGAGCCAAAGA 59.185 50.000 26.69 0.00 0.00 2.52
347 355 1.203758 CATGCATGCAGAGCCAAAGAA 59.796 47.619 26.69 0.00 0.00 2.52
348 356 0.599558 TGCATGCAGAGCCAAAGAAC 59.400 50.000 18.46 0.00 0.00 3.01
349 357 0.455633 GCATGCAGAGCCAAAGAACG 60.456 55.000 14.21 0.00 0.00 3.95
350 358 0.455633 CATGCAGAGCCAAAGAACGC 60.456 55.000 0.00 0.00 0.00 4.84
351 359 0.607489 ATGCAGAGCCAAAGAACGCT 60.607 50.000 0.00 0.00 38.27 5.07
352 360 1.208614 GCAGAGCCAAAGAACGCTG 59.791 57.895 0.00 0.00 34.84 5.18
353 361 1.208614 CAGAGCCAAAGAACGCTGC 59.791 57.895 0.00 0.00 34.84 5.25
354 362 1.072159 AGAGCCAAAGAACGCTGCT 59.928 52.632 0.00 0.00 34.84 4.24
355 363 0.321671 AGAGCCAAAGAACGCTGCTA 59.678 50.000 0.00 0.00 34.84 3.49
356 364 1.065854 AGAGCCAAAGAACGCTGCTAT 60.066 47.619 0.00 0.00 34.84 2.97
357 365 2.168521 AGAGCCAAAGAACGCTGCTATA 59.831 45.455 0.00 0.00 34.84 1.31
358 366 2.280628 AGCCAAAGAACGCTGCTATAC 58.719 47.619 0.00 0.00 32.98 1.47
359 367 2.006888 GCCAAAGAACGCTGCTATACA 58.993 47.619 0.00 0.00 0.00 2.29
360 368 2.223044 GCCAAAGAACGCTGCTATACAC 60.223 50.000 0.00 0.00 0.00 2.90
361 369 3.000041 CCAAAGAACGCTGCTATACACA 59.000 45.455 0.00 0.00 0.00 3.72
362 370 3.181520 CCAAAGAACGCTGCTATACACAC 60.182 47.826 0.00 0.00 0.00 3.82
363 371 1.909376 AGAACGCTGCTATACACACG 58.091 50.000 0.00 0.00 0.00 4.49
364 372 1.471287 AGAACGCTGCTATACACACGA 59.529 47.619 0.00 0.00 0.00 4.35
365 373 1.582502 GAACGCTGCTATACACACGAC 59.417 52.381 0.00 0.00 0.00 4.34
366 374 0.524414 ACGCTGCTATACACACGACA 59.476 50.000 0.00 0.00 0.00 4.35
367 375 1.068125 ACGCTGCTATACACACGACAA 60.068 47.619 0.00 0.00 0.00 3.18
368 376 1.583856 CGCTGCTATACACACGACAAG 59.416 52.381 0.00 0.00 0.00 3.16
369 377 2.607187 GCTGCTATACACACGACAAGT 58.393 47.619 0.00 0.00 0.00 3.16
370 378 3.729762 CGCTGCTATACACACGACAAGTA 60.730 47.826 0.00 0.00 0.00 2.24
371 379 4.360563 GCTGCTATACACACGACAAGTAT 58.639 43.478 0.00 0.00 33.41 2.12
372 380 4.207224 GCTGCTATACACACGACAAGTATG 59.793 45.833 0.00 0.00 32.49 2.39
373 381 4.678622 TGCTATACACACGACAAGTATGG 58.321 43.478 0.00 0.00 29.90 2.74
374 382 4.399934 TGCTATACACACGACAAGTATGGA 59.600 41.667 0.00 0.00 29.90 3.41
375 383 4.738740 GCTATACACACGACAAGTATGGAC 59.261 45.833 0.00 0.00 29.90 4.02
376 384 2.060326 ACACACGACAAGTATGGACG 57.940 50.000 0.00 0.00 36.83 4.79
377 385 1.610038 ACACACGACAAGTATGGACGA 59.390 47.619 0.00 0.00 35.53 4.20
378 386 2.230508 ACACACGACAAGTATGGACGAT 59.769 45.455 0.00 0.00 35.53 3.73
379 387 3.250744 CACACGACAAGTATGGACGATT 58.749 45.455 0.00 0.00 35.53 3.34
380 388 3.678072 CACACGACAAGTATGGACGATTT 59.322 43.478 0.00 0.00 35.53 2.17
381 389 4.860352 CACACGACAAGTATGGACGATTTA 59.140 41.667 0.00 0.00 35.53 1.40
382 390 4.860907 ACACGACAAGTATGGACGATTTAC 59.139 41.667 0.00 0.00 35.53 2.01
383 391 4.860352 CACGACAAGTATGGACGATTTACA 59.140 41.667 0.00 0.00 35.53 2.41
384 392 4.860907 ACGACAAGTATGGACGATTTACAC 59.139 41.667 0.00 0.00 35.53 2.90
385 393 4.860352 CGACAAGTATGGACGATTTACACA 59.140 41.667 0.00 0.00 34.21 3.72
386 394 5.220154 CGACAAGTATGGACGATTTACACAC 60.220 44.000 0.00 0.00 34.21 3.82
387 395 4.624024 ACAAGTATGGACGATTTACACACG 59.376 41.667 0.00 0.00 0.00 4.49
388 396 4.707030 AGTATGGACGATTTACACACGA 57.293 40.909 0.00 0.00 0.00 4.35
389 397 5.258456 AGTATGGACGATTTACACACGAT 57.742 39.130 0.00 0.00 0.00 3.73
390 398 5.041287 AGTATGGACGATTTACACACGATG 58.959 41.667 0.00 0.00 0.00 3.84
391 399 1.996898 TGGACGATTTACACACGATGC 59.003 47.619 0.00 0.00 0.00 3.91
392 400 2.268298 GGACGATTTACACACGATGCT 58.732 47.619 0.00 0.00 0.00 3.79
393 401 3.119424 TGGACGATTTACACACGATGCTA 60.119 43.478 0.00 0.00 0.00 3.49
394 402 3.242248 GGACGATTTACACACGATGCTAC 59.758 47.826 0.00 0.00 0.00 3.58
395 403 3.184541 ACGATTTACACACGATGCTACC 58.815 45.455 0.00 0.00 0.00 3.18
396 404 2.538449 CGATTTACACACGATGCTACCC 59.462 50.000 0.00 0.00 0.00 3.69
397 405 3.527533 GATTTACACACGATGCTACCCA 58.472 45.455 0.00 0.00 0.00 4.51
398 406 3.620427 TTTACACACGATGCTACCCAT 57.380 42.857 0.00 0.00 36.70 4.00
399 407 2.882927 TACACACGATGCTACCCATC 57.117 50.000 0.00 0.00 45.58 3.51
407 415 2.604046 ATGCTACCCATCAAGACGTC 57.396 50.000 7.70 7.70 0.00 4.34
408 416 0.535335 TGCTACCCATCAAGACGTCC 59.465 55.000 13.01 0.00 0.00 4.79
409 417 0.535335 GCTACCCATCAAGACGTCCA 59.465 55.000 13.01 0.00 0.00 4.02
410 418 1.139058 GCTACCCATCAAGACGTCCAT 59.861 52.381 13.01 0.00 0.00 3.41
411 419 2.420129 GCTACCCATCAAGACGTCCATT 60.420 50.000 13.01 0.00 0.00 3.16
412 420 2.879103 ACCCATCAAGACGTCCATTT 57.121 45.000 13.01 0.00 0.00 2.32
413 421 3.992943 ACCCATCAAGACGTCCATTTA 57.007 42.857 13.01 0.00 0.00 1.40
414 422 3.606687 ACCCATCAAGACGTCCATTTAC 58.393 45.455 13.01 0.00 0.00 2.01
415 423 3.008594 ACCCATCAAGACGTCCATTTACA 59.991 43.478 13.01 0.00 0.00 2.41
416 424 4.199310 CCCATCAAGACGTCCATTTACAT 58.801 43.478 13.01 0.00 0.00 2.29
417 425 5.104693 ACCCATCAAGACGTCCATTTACATA 60.105 40.000 13.01 0.00 0.00 2.29
418 426 5.820423 CCCATCAAGACGTCCATTTACATAA 59.180 40.000 13.01 0.00 0.00 1.90
419 427 6.017934 CCCATCAAGACGTCCATTTACATAAG 60.018 42.308 13.01 0.00 0.00 1.73
420 428 6.761242 CCATCAAGACGTCCATTTACATAAGA 59.239 38.462 13.01 0.00 0.00 2.10
421 429 7.442364 CCATCAAGACGTCCATTTACATAAGAT 59.558 37.037 13.01 0.00 0.00 2.40
422 430 9.476202 CATCAAGACGTCCATTTACATAAGATA 57.524 33.333 13.01 0.00 0.00 1.98
428 436 9.909644 GACGTCCATTTACATAAGATATACTGT 57.090 33.333 3.51 0.00 0.00 3.55
438 446 8.123639 ACATAAGATATACTGTATCAAGCCGT 57.876 34.615 3.09 0.00 0.00 5.68
439 447 8.585881 ACATAAGATATACTGTATCAAGCCGTT 58.414 33.333 3.09 0.00 0.00 4.44
440 448 9.077674 CATAAGATATACTGTATCAAGCCGTTC 57.922 37.037 3.09 0.00 0.00 3.95
441 449 6.650427 AGATATACTGTATCAAGCCGTTCA 57.350 37.500 3.09 0.00 0.00 3.18
442 450 7.050970 AGATATACTGTATCAAGCCGTTCAA 57.949 36.000 3.09 0.00 0.00 2.69
443 451 7.671302 AGATATACTGTATCAAGCCGTTCAAT 58.329 34.615 3.09 0.00 0.00 2.57
444 452 7.815068 AGATATACTGTATCAAGCCGTTCAATC 59.185 37.037 3.09 0.00 0.00 2.67
445 453 3.937814 ACTGTATCAAGCCGTTCAATCA 58.062 40.909 0.00 0.00 0.00 2.57
446 454 3.935203 ACTGTATCAAGCCGTTCAATCAG 59.065 43.478 0.00 0.00 0.00 2.90
447 455 2.677836 TGTATCAAGCCGTTCAATCAGC 59.322 45.455 0.00 0.00 0.00 4.26
448 456 1.098050 ATCAAGCCGTTCAATCAGCC 58.902 50.000 0.00 0.00 0.00 4.85
449 457 0.250684 TCAAGCCGTTCAATCAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
450 458 0.813184 CAAGCCGTTCAATCAGCCAT 59.187 50.000 0.00 0.00 0.00 4.40
451 459 1.098050 AAGCCGTTCAATCAGCCATC 58.902 50.000 0.00 0.00 0.00 3.51
452 460 1.091771 AGCCGTTCAATCAGCCATCG 61.092 55.000 0.00 0.00 0.00 3.84
453 461 1.369091 GCCGTTCAATCAGCCATCGT 61.369 55.000 0.00 0.00 0.00 3.73
454 462 0.374758 CCGTTCAATCAGCCATCGTG 59.625 55.000 0.00 0.00 0.00 4.35
455 463 0.247814 CGTTCAATCAGCCATCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
456 464 0.804364 GTTCAATCAGCCATCGTGCA 59.196 50.000 0.00 0.00 0.00 4.57
457 465 1.402968 GTTCAATCAGCCATCGTGCAT 59.597 47.619 0.00 0.00 0.00 3.96
458 466 2.613595 GTTCAATCAGCCATCGTGCATA 59.386 45.455 0.00 0.00 0.00 3.14
459 467 2.486918 TCAATCAGCCATCGTGCATAG 58.513 47.619 0.00 0.00 0.00 2.23
460 468 2.158914 TCAATCAGCCATCGTGCATAGT 60.159 45.455 0.00 0.00 0.00 2.12
461 469 2.615447 CAATCAGCCATCGTGCATAGTT 59.385 45.455 0.00 0.00 0.00 2.24
462 470 1.939974 TCAGCCATCGTGCATAGTTC 58.060 50.000 0.00 0.00 0.00 3.01
463 471 0.578683 CAGCCATCGTGCATAGTTCG 59.421 55.000 0.00 0.00 0.00 3.95
464 472 0.530650 AGCCATCGTGCATAGTTCGG 60.531 55.000 0.00 0.00 0.00 4.30
465 473 1.498865 GCCATCGTGCATAGTTCGGG 61.499 60.000 0.00 0.00 0.00 5.14
466 474 1.498865 CCATCGTGCATAGTTCGGGC 61.499 60.000 0.00 0.00 0.00 6.13
467 475 1.591594 ATCGTGCATAGTTCGGGCG 60.592 57.895 0.00 0.00 0.00 6.13
468 476 2.971428 ATCGTGCATAGTTCGGGCGG 62.971 60.000 0.00 0.00 0.00 6.13
469 477 2.895372 GTGCATAGTTCGGGCGGG 60.895 66.667 0.00 0.00 0.00 6.13
470 478 4.849310 TGCATAGTTCGGGCGGGC 62.849 66.667 0.00 0.00 0.00 6.13
471 479 4.849310 GCATAGTTCGGGCGGGCA 62.849 66.667 3.27 0.00 0.00 5.36
472 480 2.895372 CATAGTTCGGGCGGGCAC 60.895 66.667 3.27 0.00 0.00 5.01
473 481 3.081409 ATAGTTCGGGCGGGCACT 61.081 61.111 3.27 0.85 0.00 4.40
474 482 3.385749 ATAGTTCGGGCGGGCACTG 62.386 63.158 3.27 0.00 38.10 3.66
487 495 3.991051 CACTGTCGTCCGCCCAGT 61.991 66.667 6.17 6.17 39.93 4.00
488 496 2.282674 ACTGTCGTCCGCCCAGTA 60.283 61.111 9.18 0.00 37.66 2.74
489 497 2.341101 ACTGTCGTCCGCCCAGTAG 61.341 63.158 9.18 0.00 37.66 2.57
490 498 2.282674 TGTCGTCCGCCCAGTAGT 60.283 61.111 0.00 0.00 0.00 2.73
491 499 1.874345 CTGTCGTCCGCCCAGTAGTT 61.874 60.000 0.00 0.00 0.00 2.24
492 500 1.291272 GTCGTCCGCCCAGTAGTTT 59.709 57.895 0.00 0.00 0.00 2.66
493 501 0.735287 GTCGTCCGCCCAGTAGTTTC 60.735 60.000 0.00 0.00 0.00 2.78
494 502 1.804326 CGTCCGCCCAGTAGTTTCG 60.804 63.158 0.00 0.00 0.00 3.46
495 503 1.588082 GTCCGCCCAGTAGTTTCGA 59.412 57.895 0.00 0.00 0.00 3.71
523 531 5.850128 CCAAATGCTATAGTACTCGTACGTC 59.150 44.000 16.05 4.94 40.80 4.34
538 546 2.174334 CGTCTCCCGTTCCGTTCTA 58.826 57.895 0.00 0.00 0.00 2.10
585 593 6.533367 TCCCGTTGCTGAATTTATTTATTTGC 59.467 34.615 0.00 0.00 0.00 3.68
613 621 2.492088 TCATTCACTCGTCACCTACCTG 59.508 50.000 0.00 0.00 0.00 4.00
619 627 2.990479 GTCACCTACCTGGCCCTG 59.010 66.667 0.00 0.00 40.22 4.45
705 716 1.528129 CAAGTGAGAAAGCCTGGGAC 58.472 55.000 0.00 0.00 0.00 4.46
708 719 1.349357 AGTGAGAAAGCCTGGGACTTC 59.651 52.381 0.00 0.00 0.00 3.01
732 743 2.109181 GGCCATCGTACCAGCTCC 59.891 66.667 0.00 0.00 0.00 4.70
768 779 4.157607 CCCGCGGCATTTAATCCT 57.842 55.556 22.85 0.00 0.00 3.24
769 780 2.414750 CCCGCGGCATTTAATCCTT 58.585 52.632 22.85 0.00 0.00 3.36
810 821 0.978907 CCAAAGCAATGGAAAGGCCT 59.021 50.000 0.00 0.00 43.54 5.19
812 823 0.322648 AAAGCAATGGAAAGGCCTGC 59.677 50.000 5.69 3.90 37.94 4.85
862 873 3.516578 GCAGTAGCTTTCCACGACT 57.483 52.632 0.00 0.00 37.91 4.18
898 911 6.537660 CGTTTAAAATACGGAGGATTCCTTCT 59.462 38.462 6.68 0.00 41.67 2.85
937 950 5.172232 GCTTCTTCTTCGCTGTTTTCTTTTC 59.828 40.000 0.00 0.00 0.00 2.29
939 952 4.638421 TCTTCTTCGCTGTTTTCTTTTCCA 59.362 37.500 0.00 0.00 0.00 3.53
940 953 5.299279 TCTTCTTCGCTGTTTTCTTTTCCAT 59.701 36.000 0.00 0.00 0.00 3.41
965 979 1.002087 TGTCCGCTTCTTCCTTCCTTC 59.998 52.381 0.00 0.00 0.00 3.46
986 1000 2.219325 CTGACTGAGGTGGGAGCGTC 62.219 65.000 0.00 0.00 0.00 5.19
1015 1029 1.153309 TGGATGCCTGCAGATCACG 60.153 57.895 17.39 0.00 0.00 4.35
1020 1034 2.898738 CCTGCAGATCACGAGGCT 59.101 61.111 17.39 0.00 0.00 4.58
1021 1035 1.521010 CCTGCAGATCACGAGGCTG 60.521 63.158 17.39 0.00 0.00 4.85
1022 1036 1.514553 CTGCAGATCACGAGGCTGA 59.485 57.895 8.42 0.00 0.00 4.26
1031 1045 1.269723 TCACGAGGCTGAGTGTTGTAG 59.730 52.381 16.23 0.00 39.25 2.74
1240 1254 2.997897 GCCTGTCCGACCTGTCCT 60.998 66.667 0.00 0.00 0.00 3.85
1446 1468 2.292267 CTGCTTGTCAAGACTGGTGTT 58.708 47.619 16.99 0.00 0.00 3.32
1542 1924 0.677731 TGCTCGCTAGGCTGCAAATT 60.678 50.000 0.50 0.00 34.23 1.82
1698 2088 3.798954 GATCAGGGAGAAGGCGGCG 62.799 68.421 0.51 0.51 0.00 6.46
1848 2247 2.447887 GCAGCGTCTGTCCATGTCG 61.448 63.158 8.32 0.00 33.43 4.35
2350 2768 1.311403 AGCTCCCCGGAGATGAAGA 59.689 57.895 15.14 0.00 44.53 2.87
2721 3149 2.472909 GCTGCGCACCCTATTCACC 61.473 63.158 5.66 0.00 0.00 4.02
2835 3263 1.889829 ACTGCAGAGAGTGGTACTGTC 59.110 52.381 23.35 0.00 38.65 3.51
2864 3292 6.327154 CCGATTTGAACCTTTTAACATACCC 58.673 40.000 0.00 0.00 0.00 3.69
2986 3421 3.003275 TCAGTGAAGAACATTTTGCCGAC 59.997 43.478 0.00 0.00 0.00 4.79
3010 3445 5.929697 TGTATTGTCTGCTGAGTTTTGAG 57.070 39.130 0.00 0.00 0.00 3.02
3011 3446 3.911661 ATTGTCTGCTGAGTTTTGAGC 57.088 42.857 0.00 0.00 35.65 4.26
3034 3469 2.203584 AGGGCCAATTCTGATCTCTGT 58.796 47.619 6.18 0.00 0.00 3.41
3041 3476 5.188434 CCAATTCTGATCTCTGTTTGGCTA 58.812 41.667 0.00 0.00 0.00 3.93
3043 3478 6.994496 CCAATTCTGATCTCTGTTTGGCTATA 59.006 38.462 0.00 0.00 0.00 1.31
3044 3479 7.664731 CCAATTCTGATCTCTGTTTGGCTATAT 59.335 37.037 0.00 0.00 0.00 0.86
3045 3480 9.716531 CAATTCTGATCTCTGTTTGGCTATATA 57.283 33.333 0.00 0.00 0.00 0.86
3162 3741 8.777413 TCATTGTAGTATGAAAAGCATGATAGC 58.223 33.333 0.00 0.00 37.87 2.97
3200 3779 3.119495 CGGGAAGGCGAATGATTTTTCTT 60.119 43.478 0.00 0.00 0.00 2.52
3205 3784 5.649782 AGGCGAATGATTTTTCTTGATGT 57.350 34.783 0.00 0.00 0.00 3.06
3291 3875 2.332063 ACAGGGAAAGCATCATACCG 57.668 50.000 0.00 0.00 0.00 4.02
3297 3881 2.609459 GGAAAGCATCATACCGTCACAG 59.391 50.000 0.00 0.00 0.00 3.66
3299 3883 2.586258 AGCATCATACCGTCACAGAC 57.414 50.000 0.00 0.00 0.00 3.51
3300 3884 1.824852 AGCATCATACCGTCACAGACA 59.175 47.619 0.00 0.00 32.09 3.41
3301 3885 2.432146 AGCATCATACCGTCACAGACAT 59.568 45.455 0.00 0.00 32.09 3.06
3302 3886 3.636764 AGCATCATACCGTCACAGACATA 59.363 43.478 0.00 0.00 32.09 2.29
3303 3887 4.281941 AGCATCATACCGTCACAGACATAT 59.718 41.667 0.00 0.00 32.09 1.78
3304 3888 4.991056 GCATCATACCGTCACAGACATATT 59.009 41.667 0.00 0.00 32.09 1.28
3305 3889 5.107337 GCATCATACCGTCACAGACATATTG 60.107 44.000 0.00 0.00 32.09 1.90
3306 3890 5.845391 TCATACCGTCACAGACATATTGA 57.155 39.130 0.00 0.00 32.09 2.57
3307 3891 6.405278 TCATACCGTCACAGACATATTGAT 57.595 37.500 0.00 0.00 32.09 2.57
3308 3892 6.816136 TCATACCGTCACAGACATATTGATT 58.184 36.000 0.00 0.00 32.09 2.57
3309 3893 7.947282 TCATACCGTCACAGACATATTGATTA 58.053 34.615 0.00 0.00 32.09 1.75
3310 3894 8.082242 TCATACCGTCACAGACATATTGATTAG 58.918 37.037 0.00 0.00 32.09 1.73
3311 3895 5.050490 ACCGTCACAGACATATTGATTAGC 58.950 41.667 0.00 0.00 32.09 3.09
3312 3896 4.449068 CCGTCACAGACATATTGATTAGCC 59.551 45.833 0.00 0.00 32.09 3.93
3313 3897 5.049828 CGTCACAGACATATTGATTAGCCA 58.950 41.667 0.00 0.00 32.09 4.75
3314 3898 5.523552 CGTCACAGACATATTGATTAGCCAA 59.476 40.000 0.00 0.00 32.09 4.52
3315 3899 6.510157 CGTCACAGACATATTGATTAGCCAAC 60.510 42.308 0.00 0.00 32.09 3.77
3316 3900 5.822519 TCACAGACATATTGATTAGCCAACC 59.177 40.000 0.00 0.00 0.00 3.77
3317 3901 4.816385 ACAGACATATTGATTAGCCAACCG 59.184 41.667 0.00 0.00 0.00 4.44
3318 3902 5.056480 CAGACATATTGATTAGCCAACCGA 58.944 41.667 0.00 0.00 0.00 4.69
3319 3903 5.527214 CAGACATATTGATTAGCCAACCGAA 59.473 40.000 0.00 0.00 0.00 4.30
3320 3904 6.205464 CAGACATATTGATTAGCCAACCGAAT 59.795 38.462 0.00 0.00 0.00 3.34
3321 3905 6.772716 AGACATATTGATTAGCCAACCGAATT 59.227 34.615 0.00 0.00 0.00 2.17
3322 3906 6.970484 ACATATTGATTAGCCAACCGAATTC 58.030 36.000 0.00 0.00 0.00 2.17
3323 3907 6.772716 ACATATTGATTAGCCAACCGAATTCT 59.227 34.615 3.52 0.00 0.00 2.40
3324 3908 7.285401 ACATATTGATTAGCCAACCGAATTCTT 59.715 33.333 3.52 0.00 0.00 2.52
3325 3909 8.783093 CATATTGATTAGCCAACCGAATTCTTA 58.217 33.333 3.52 0.00 0.00 2.10
3326 3910 7.823745 ATTGATTAGCCAACCGAATTCTTAT 57.176 32.000 3.52 0.00 0.00 1.73
3327 3911 6.618287 TGATTAGCCAACCGAATTCTTATG 57.382 37.500 3.52 0.00 0.00 1.90
3328 3912 6.119536 TGATTAGCCAACCGAATTCTTATGT 58.880 36.000 3.52 0.00 0.00 2.29
3329 3913 6.601613 TGATTAGCCAACCGAATTCTTATGTT 59.398 34.615 3.52 0.00 0.00 2.71
3330 3914 6.827586 TTAGCCAACCGAATTCTTATGTTT 57.172 33.333 3.52 0.00 0.00 2.83
3331 3915 5.310720 AGCCAACCGAATTCTTATGTTTC 57.689 39.130 3.52 0.00 0.00 2.78
3332 3916 5.010282 AGCCAACCGAATTCTTATGTTTCT 58.990 37.500 3.52 0.16 0.00 2.52
3333 3917 5.123979 AGCCAACCGAATTCTTATGTTTCTC 59.876 40.000 3.52 0.00 0.00 2.87
3334 3918 5.676331 GCCAACCGAATTCTTATGTTTCTCC 60.676 44.000 3.52 0.00 0.00 3.71
3335 3919 5.414454 CCAACCGAATTCTTATGTTTCTCCA 59.586 40.000 3.52 0.00 0.00 3.86
3336 3920 6.095440 CCAACCGAATTCTTATGTTTCTCCAT 59.905 38.462 3.52 0.00 0.00 3.41
3337 3921 7.282224 CCAACCGAATTCTTATGTTTCTCCATA 59.718 37.037 3.52 0.00 0.00 2.74
3338 3922 8.840321 CAACCGAATTCTTATGTTTCTCCATAT 58.160 33.333 3.52 0.00 0.00 1.78
3339 3923 8.383318 ACCGAATTCTTATGTTTCTCCATATG 57.617 34.615 3.52 0.00 0.00 1.78
3340 3924 8.210946 ACCGAATTCTTATGTTTCTCCATATGA 58.789 33.333 3.65 0.00 32.64 2.15
3341 3925 9.224267 CCGAATTCTTATGTTTCTCCATATGAT 57.776 33.333 3.65 0.00 33.83 2.45
3351 3935 9.636789 ATGTTTCTCCATATGATTTCTTCATGA 57.363 29.630 3.65 0.00 44.90 3.07
3352 3936 9.465199 TGTTTCTCCATATGATTTCTTCATGAA 57.535 29.630 8.12 8.12 44.90 2.57
3353 3937 9.947669 GTTTCTCCATATGATTTCTTCATGAAG 57.052 33.333 26.56 26.56 44.90 3.02
3354 3938 9.690913 TTTCTCCATATGATTTCTTCATGAAGT 57.309 29.630 29.80 14.96 44.90 3.01
3373 3957 6.483385 GAAGTATTCAGATGCAGATGATGG 57.517 41.667 4.61 0.00 46.62 3.51
3374 3958 5.563876 AGTATTCAGATGCAGATGATGGT 57.436 39.130 4.61 0.00 0.00 3.55
3375 3959 5.938279 AGTATTCAGATGCAGATGATGGTT 58.062 37.500 4.61 0.00 0.00 3.67
3376 3960 5.763698 AGTATTCAGATGCAGATGATGGTTG 59.236 40.000 4.61 0.00 0.00 3.77
3377 3961 3.918294 TCAGATGCAGATGATGGTTGA 57.082 42.857 0.00 0.00 0.00 3.18
3378 3962 4.432980 TCAGATGCAGATGATGGTTGAT 57.567 40.909 0.00 0.00 0.00 2.57
3379 3963 4.386711 TCAGATGCAGATGATGGTTGATC 58.613 43.478 0.00 0.00 0.00 2.92
3380 3964 4.134563 CAGATGCAGATGATGGTTGATCA 58.865 43.478 0.00 0.00 45.43 2.92
3381 3965 4.578928 CAGATGCAGATGATGGTTGATCAA 59.421 41.667 3.38 3.38 44.50 2.57
3382 3966 5.241728 CAGATGCAGATGATGGTTGATCAAT 59.758 40.000 12.12 0.00 44.50 2.57
3383 3967 5.473846 AGATGCAGATGATGGTTGATCAATC 59.526 40.000 12.12 12.05 44.50 2.67
3384 3968 4.788679 TGCAGATGATGGTTGATCAATCT 58.211 39.130 19.21 10.28 44.50 2.40
3385 3969 4.578928 TGCAGATGATGGTTGATCAATCTG 59.421 41.667 21.97 21.97 44.50 2.90
3386 3970 4.023107 GCAGATGATGGTTGATCAATCTGG 60.023 45.833 25.07 13.64 44.50 3.86
3387 3971 5.374071 CAGATGATGGTTGATCAATCTGGA 58.626 41.667 19.21 0.00 44.50 3.86
3388 3972 5.826208 CAGATGATGGTTGATCAATCTGGAA 59.174 40.000 19.21 0.00 44.50 3.53
3389 3973 6.017026 CAGATGATGGTTGATCAATCTGGAAG 60.017 42.308 19.21 0.92 44.50 3.46
3390 3974 4.529897 TGATGGTTGATCAATCTGGAAGG 58.470 43.478 19.21 0.00 38.19 3.46
3391 3975 4.018141 TGATGGTTGATCAATCTGGAAGGT 60.018 41.667 19.21 0.00 38.19 3.50
3392 3976 3.689347 TGGTTGATCAATCTGGAAGGTG 58.311 45.455 19.21 0.00 0.00 4.00
3393 3977 3.330405 TGGTTGATCAATCTGGAAGGTGA 59.670 43.478 19.21 0.00 33.87 4.02
3394 3978 4.202556 TGGTTGATCAATCTGGAAGGTGAA 60.203 41.667 19.21 0.00 33.24 3.18
3395 3979 4.766891 GGTTGATCAATCTGGAAGGTGAAA 59.233 41.667 12.12 0.00 33.24 2.69
3396 3980 5.105997 GGTTGATCAATCTGGAAGGTGAAAG 60.106 44.000 12.12 0.00 33.24 2.62
3397 3981 4.592942 TGATCAATCTGGAAGGTGAAAGG 58.407 43.478 0.00 0.00 33.24 3.11
3398 3982 4.043310 TGATCAATCTGGAAGGTGAAAGGT 59.957 41.667 0.00 0.00 33.24 3.50
3399 3983 4.021102 TCAATCTGGAAGGTGAAAGGTC 57.979 45.455 0.00 0.00 0.00 3.85
3400 3984 3.394274 TCAATCTGGAAGGTGAAAGGTCA 59.606 43.478 0.00 0.00 0.00 4.02
3401 3985 3.710209 ATCTGGAAGGTGAAAGGTCAG 57.290 47.619 0.00 0.00 33.27 3.51
3402 3986 2.408565 TCTGGAAGGTGAAAGGTCAGT 58.591 47.619 0.00 0.00 33.27 3.41
3403 3987 2.368875 TCTGGAAGGTGAAAGGTCAGTC 59.631 50.000 0.00 0.00 33.27 3.51
3404 3988 2.370189 CTGGAAGGTGAAAGGTCAGTCT 59.630 50.000 0.00 0.00 33.27 3.24
3405 3989 2.368875 TGGAAGGTGAAAGGTCAGTCTC 59.631 50.000 0.00 0.00 33.27 3.36
3406 3990 2.289756 GGAAGGTGAAAGGTCAGTCTCC 60.290 54.545 0.00 0.00 33.27 3.71
3407 3991 0.969894 AGGTGAAAGGTCAGTCTCCG 59.030 55.000 0.00 0.00 33.27 4.63
3408 3992 0.037232 GGTGAAAGGTCAGTCTCCGG 60.037 60.000 0.00 0.00 33.27 5.14
3409 3993 0.670854 GTGAAAGGTCAGTCTCCGGC 60.671 60.000 0.00 0.00 33.27 6.13
3410 3994 1.118965 TGAAAGGTCAGTCTCCGGCA 61.119 55.000 0.00 0.00 0.00 5.69
3411 3995 0.034896 GAAAGGTCAGTCTCCGGCAA 59.965 55.000 0.00 0.00 0.00 4.52
3412 3996 0.693049 AAAGGTCAGTCTCCGGCAAT 59.307 50.000 0.00 0.00 0.00 3.56
3413 3997 0.250513 AAGGTCAGTCTCCGGCAATC 59.749 55.000 0.00 0.00 0.00 2.67
3414 3998 0.904865 AGGTCAGTCTCCGGCAATCA 60.905 55.000 0.00 0.00 0.00 2.57
3415 3999 0.179000 GGTCAGTCTCCGGCAATCAT 59.821 55.000 0.00 0.00 0.00 2.45
3416 4000 1.407437 GGTCAGTCTCCGGCAATCATT 60.407 52.381 0.00 0.00 0.00 2.57
3417 4001 1.667724 GTCAGTCTCCGGCAATCATTG 59.332 52.381 0.00 0.00 0.00 2.82
3418 4002 1.278985 TCAGTCTCCGGCAATCATTGT 59.721 47.619 0.00 0.00 0.00 2.71
3419 4003 1.667724 CAGTCTCCGGCAATCATTGTC 59.332 52.381 0.00 0.00 0.00 3.18
3420 4004 1.556911 AGTCTCCGGCAATCATTGTCT 59.443 47.619 0.00 0.00 31.77 3.41
3421 4005 2.026822 AGTCTCCGGCAATCATTGTCTT 60.027 45.455 0.00 0.00 31.77 3.01
3422 4006 2.096496 GTCTCCGGCAATCATTGTCTTG 59.904 50.000 0.00 0.00 31.77 3.02
3423 4007 2.027285 TCTCCGGCAATCATTGTCTTGA 60.027 45.455 0.00 0.00 31.77 3.02
3424 4008 2.083774 TCCGGCAATCATTGTCTTGAC 58.916 47.619 0.00 0.00 31.77 3.18
3425 4009 2.086869 CCGGCAATCATTGTCTTGACT 58.913 47.619 0.00 0.00 31.77 3.41
3426 4010 3.055458 TCCGGCAATCATTGTCTTGACTA 60.055 43.478 0.00 0.00 31.77 2.59
3427 4011 3.879295 CCGGCAATCATTGTCTTGACTAT 59.121 43.478 0.00 0.00 31.77 2.12
3428 4012 5.056480 CCGGCAATCATTGTCTTGACTATA 58.944 41.667 0.00 0.00 31.77 1.31
3429 4013 5.178252 CCGGCAATCATTGTCTTGACTATAG 59.822 44.000 0.00 0.00 31.77 1.31
3430 4014 5.755375 CGGCAATCATTGTCTTGACTATAGT 59.245 40.000 4.68 4.68 31.77 2.12
3431 4015 6.074088 CGGCAATCATTGTCTTGACTATAGTC 60.074 42.308 23.53 23.53 38.12 2.59
3432 4016 6.989169 GGCAATCATTGTCTTGACTATAGTCT 59.011 38.462 28.53 8.34 37.85 3.24
3433 4017 7.170658 GGCAATCATTGTCTTGACTATAGTCTC 59.829 40.741 28.53 17.82 37.85 3.36
3434 4018 7.708322 GCAATCATTGTCTTGACTATAGTCTCA 59.292 37.037 28.53 19.65 44.99 3.27
3435 4019 9.591792 CAATCATTGTCTTGACTATAGTCTCAA 57.408 33.333 28.53 24.69 44.99 3.02
3437 4021 8.988064 TCATTGTCTTGACTATAGTCTCAAAC 57.012 34.615 28.53 21.03 44.99 2.93
3438 4022 8.807118 TCATTGTCTTGACTATAGTCTCAAACT 58.193 33.333 28.53 13.86 44.99 2.66
3439 4023 8.867935 CATTGTCTTGACTATAGTCTCAAACTG 58.132 37.037 28.53 19.01 44.99 3.16
3440 4024 7.761038 TGTCTTGACTATAGTCTCAAACTGA 57.239 36.000 28.53 14.94 44.99 3.41
3441 4025 8.354711 TGTCTTGACTATAGTCTCAAACTGAT 57.645 34.615 28.53 0.00 44.99 2.90
3442 4026 8.246871 TGTCTTGACTATAGTCTCAAACTGATG 58.753 37.037 28.53 11.61 44.99 3.07
3443 4027 8.462811 GTCTTGACTATAGTCTCAAACTGATGA 58.537 37.037 28.53 13.35 44.99 2.92
3444 4028 8.681806 TCTTGACTATAGTCTCAAACTGATGAG 58.318 37.037 28.53 11.83 46.62 2.90
3445 4029 7.946381 TGACTATAGTCTCAAACTGATGAGT 57.054 36.000 28.53 0.00 45.65 3.41
3446 4030 7.766283 TGACTATAGTCTCAAACTGATGAGTG 58.234 38.462 28.53 0.00 45.65 3.51
3447 4031 7.611855 TGACTATAGTCTCAAACTGATGAGTGA 59.388 37.037 28.53 4.33 45.65 3.41
3448 4032 8.532186 ACTATAGTCTCAAACTGATGAGTGAT 57.468 34.615 0.00 8.53 45.65 3.06
3449 4033 8.412456 ACTATAGTCTCAAACTGATGAGTGATG 58.588 37.037 0.00 0.00 45.65 3.07
3450 4034 5.735285 AGTCTCAAACTGATGAGTGATGA 57.265 39.130 12.47 2.04 45.65 2.92
3451 4035 5.722263 AGTCTCAAACTGATGAGTGATGAG 58.278 41.667 17.08 17.08 45.65 2.90
3452 4036 4.329528 GTCTCAAACTGATGAGTGATGAGC 59.670 45.833 17.90 12.03 45.65 4.26
3453 4037 3.603532 TCAAACTGATGAGTGATGAGCC 58.396 45.455 0.00 0.00 30.61 4.70
3454 4038 2.306341 AACTGATGAGTGATGAGCCG 57.694 50.000 0.00 0.00 30.61 5.52
3455 4039 0.463204 ACTGATGAGTGATGAGCCGG 59.537 55.000 0.00 0.00 0.00 6.13
3456 4040 0.463204 CTGATGAGTGATGAGCCGGT 59.537 55.000 1.90 0.00 0.00 5.28
3457 4041 0.176449 TGATGAGTGATGAGCCGGTG 59.824 55.000 1.90 0.00 0.00 4.94
3458 4042 0.461548 GATGAGTGATGAGCCGGTGA 59.538 55.000 1.90 0.00 0.00 4.02
3459 4043 0.176680 ATGAGTGATGAGCCGGTGAC 59.823 55.000 1.90 0.00 0.00 3.67
3477 4061 3.741029 CGATGTGTCGGACAGGAAT 57.259 52.632 11.83 5.87 44.00 3.01
3478 4062 2.010145 CGATGTGTCGGACAGGAATT 57.990 50.000 11.83 0.00 44.00 2.17
3479 4063 1.927174 CGATGTGTCGGACAGGAATTC 59.073 52.381 11.83 0.00 44.00 2.17
3480 4064 2.673893 CGATGTGTCGGACAGGAATTCA 60.674 50.000 11.83 5.20 44.00 2.57
3481 4065 2.163818 TGTGTCGGACAGGAATTCAC 57.836 50.000 11.83 0.00 0.00 3.18
3482 4066 1.691976 TGTGTCGGACAGGAATTCACT 59.308 47.619 11.83 0.00 0.00 3.41
3483 4067 2.104111 TGTGTCGGACAGGAATTCACTT 59.896 45.455 11.83 0.00 0.00 3.16
3484 4068 2.737252 GTGTCGGACAGGAATTCACTTC 59.263 50.000 11.83 0.00 0.00 3.01
3485 4069 2.367241 TGTCGGACAGGAATTCACTTCA 59.633 45.455 6.76 0.00 35.41 3.02
3486 4070 2.737252 GTCGGACAGGAATTCACTTCAC 59.263 50.000 7.93 0.00 35.41 3.18
3487 4071 2.632996 TCGGACAGGAATTCACTTCACT 59.367 45.455 7.93 0.00 35.41 3.41
3488 4072 2.738846 CGGACAGGAATTCACTTCACTG 59.261 50.000 7.93 6.68 37.78 3.66
3491 4075 3.406764 ACAGGAATTCACTTCACTGAGC 58.593 45.455 7.93 0.00 36.47 4.26
3495 4079 4.225942 AGGAATTCACTTCACTGAGCCATA 59.774 41.667 7.93 0.00 35.41 2.74
3572 4156 4.386711 TCAGATGCAGATGATGGTTGATC 58.613 43.478 0.00 0.00 0.00 2.92
3642 4229 7.816995 ACTAAGTCTCAAACTGATGAAGTGATC 59.183 37.037 0.00 0.00 39.81 2.92
3679 4682 2.781911 GGACAGGAATCCGCTTTCC 58.218 57.895 6.51 6.51 44.67 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.311408 CCATGTGAAAAAGAAAAAGGCAAAAA 58.689 30.769 0.00 0.00 0.00 1.94
23 24 6.624642 GCCATGTGAAAAAGAAAAAGGCAAAA 60.625 34.615 0.00 0.00 38.27 2.44
24 25 5.163673 GCCATGTGAAAAAGAAAAAGGCAAA 60.164 36.000 0.00 0.00 38.27 3.68
25 26 4.335037 GCCATGTGAAAAAGAAAAAGGCAA 59.665 37.500 0.00 0.00 38.27 4.52
26 27 3.876320 GCCATGTGAAAAAGAAAAAGGCA 59.124 39.130 0.00 0.00 38.27 4.75
27 28 3.876320 TGCCATGTGAAAAAGAAAAAGGC 59.124 39.130 0.00 0.00 38.82 4.35
28 29 5.561339 GCATGCCATGTGAAAAAGAAAAAGG 60.561 40.000 6.36 0.00 0.00 3.11
29 30 5.007823 TGCATGCCATGTGAAAAAGAAAAAG 59.992 36.000 16.68 0.00 0.00 2.27
30 31 4.880120 TGCATGCCATGTGAAAAAGAAAAA 59.120 33.333 16.68 0.00 0.00 1.94
31 32 4.449131 TGCATGCCATGTGAAAAAGAAAA 58.551 34.783 16.68 0.00 0.00 2.29
32 33 4.059511 CTGCATGCCATGTGAAAAAGAAA 58.940 39.130 16.68 0.00 0.00 2.52
33 34 3.655486 CTGCATGCCATGTGAAAAAGAA 58.345 40.909 16.68 0.00 0.00 2.52
34 35 2.610976 GCTGCATGCCATGTGAAAAAGA 60.611 45.455 16.68 0.00 35.15 2.52
35 36 1.730064 GCTGCATGCCATGTGAAAAAG 59.270 47.619 16.68 2.40 35.15 2.27
36 37 1.345089 AGCTGCATGCCATGTGAAAAA 59.655 42.857 16.68 0.00 44.23 1.94
37 38 0.970640 AGCTGCATGCCATGTGAAAA 59.029 45.000 16.68 0.00 44.23 2.29
38 39 0.970640 AAGCTGCATGCCATGTGAAA 59.029 45.000 16.68 0.00 44.23 2.69
39 40 0.970640 AAAGCTGCATGCCATGTGAA 59.029 45.000 16.68 0.00 44.23 3.18
40 41 0.970640 AAAAGCTGCATGCCATGTGA 59.029 45.000 16.68 0.00 44.23 3.58
41 42 1.463056 CAAAAAGCTGCATGCCATGTG 59.537 47.619 16.68 1.24 44.23 3.21
42 43 1.609580 CCAAAAAGCTGCATGCCATGT 60.610 47.619 16.68 0.00 44.23 3.21
43 44 1.083489 CCAAAAAGCTGCATGCCATG 58.917 50.000 16.68 0.00 44.23 3.66
44 45 0.978151 TCCAAAAAGCTGCATGCCAT 59.022 45.000 16.68 0.00 44.23 4.40
45 46 0.319083 CTCCAAAAAGCTGCATGCCA 59.681 50.000 16.68 2.21 44.23 4.92
46 47 0.390735 CCTCCAAAAAGCTGCATGCC 60.391 55.000 16.68 0.00 44.23 4.40
47 48 0.390735 CCCTCCAAAAAGCTGCATGC 60.391 55.000 11.82 11.82 43.29 4.06
48 49 0.390735 GCCCTCCAAAAAGCTGCATG 60.391 55.000 1.02 0.00 0.00 4.06
49 50 0.543646 AGCCCTCCAAAAAGCTGCAT 60.544 50.000 1.02 0.00 33.41 3.96
50 51 0.760189 AAGCCCTCCAAAAAGCTGCA 60.760 50.000 1.02 0.00 35.30 4.41
51 52 0.394192 AAAGCCCTCCAAAAAGCTGC 59.606 50.000 0.00 0.00 35.30 5.25
52 53 2.158914 ACAAAAGCCCTCCAAAAAGCTG 60.159 45.455 0.00 0.00 35.30 4.24
53 54 2.118679 ACAAAAGCCCTCCAAAAAGCT 58.881 42.857 0.00 0.00 37.10 3.74
54 55 2.212652 CACAAAAGCCCTCCAAAAAGC 58.787 47.619 0.00 0.00 0.00 3.51
55 56 3.541996 ACACAAAAGCCCTCCAAAAAG 57.458 42.857 0.00 0.00 0.00 2.27
56 57 3.990959 AACACAAAAGCCCTCCAAAAA 57.009 38.095 0.00 0.00 0.00 1.94
57 58 3.181485 CGTAACACAAAAGCCCTCCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
58 59 2.359531 CGTAACACAAAAGCCCTCCAAA 59.640 45.455 0.00 0.00 0.00 3.28
59 60 1.950909 CGTAACACAAAAGCCCTCCAA 59.049 47.619 0.00 0.00 0.00 3.53
60 61 1.141254 TCGTAACACAAAAGCCCTCCA 59.859 47.619 0.00 0.00 0.00 3.86
61 62 1.886886 TCGTAACACAAAAGCCCTCC 58.113 50.000 0.00 0.00 0.00 4.30
62 63 3.852205 GCTTTCGTAACACAAAAGCCCTC 60.852 47.826 3.82 0.00 45.73 4.30
63 64 2.034179 GCTTTCGTAACACAAAAGCCCT 59.966 45.455 3.82 0.00 45.73 5.19
64 65 2.390938 GCTTTCGTAACACAAAAGCCC 58.609 47.619 3.82 0.00 45.73 5.19
119 120 8.202137 GGTACTCATAATTTTCACACTAGGCTA 58.798 37.037 0.00 0.00 0.00 3.93
120 121 7.048512 GGTACTCATAATTTTCACACTAGGCT 58.951 38.462 0.00 0.00 0.00 4.58
187 195 4.082408 TCTGAGGAAAGTTCGCGATCTTAA 60.082 41.667 27.54 13.21 0.00 1.85
188 196 3.442625 TCTGAGGAAAGTTCGCGATCTTA 59.557 43.478 27.54 14.00 0.00 2.10
195 203 1.627550 GCCGTCTGAGGAAAGTTCGC 61.628 60.000 0.00 0.00 0.00 4.70
239 247 1.983119 TTCGGCATTAGAGGGGCTGG 61.983 60.000 0.00 0.00 34.70 4.85
259 267 6.473397 AAGCAATTTTGTTTGAACGTTTGA 57.527 29.167 0.46 0.00 30.20 2.69
268 276 9.161684 GCATTTTCTTCTAAGCAATTTTGTTTG 57.838 29.630 3.05 0.00 33.58 2.93
269 277 8.891720 TGCATTTTCTTCTAAGCAATTTTGTTT 58.108 25.926 0.00 0.00 35.71 2.83
272 280 7.005380 CGTGCATTTTCTTCTAAGCAATTTTG 58.995 34.615 0.00 0.00 33.37 2.44
275 283 4.622740 GCGTGCATTTTCTTCTAAGCAATT 59.377 37.500 0.00 0.00 33.37 2.32
280 288 2.169179 GCGCGTGCATTTTCTTCTAAG 58.831 47.619 17.66 0.00 42.15 2.18
295 303 0.884704 ATCAAAACAGACTGGCGCGT 60.885 50.000 8.43 0.00 0.00 6.01
308 316 5.221402 TGCATGTTACTTCCAAGCATCAAAA 60.221 36.000 0.00 0.00 32.21 2.44
333 341 1.227943 AGCGTTCTTTGGCTCTGCA 60.228 52.632 0.00 0.00 33.32 4.41
334 342 1.208614 CAGCGTTCTTTGGCTCTGC 59.791 57.895 0.00 0.00 37.41 4.26
335 343 1.208614 GCAGCGTTCTTTGGCTCTG 59.791 57.895 0.00 0.00 37.41 3.35
336 344 0.321671 TAGCAGCGTTCTTTGGCTCT 59.678 50.000 0.00 0.00 37.41 4.09
337 345 1.373570 ATAGCAGCGTTCTTTGGCTC 58.626 50.000 0.00 0.00 37.41 4.70
338 346 2.280628 GTATAGCAGCGTTCTTTGGCT 58.719 47.619 0.00 0.00 40.90 4.75
339 347 2.006888 TGTATAGCAGCGTTCTTTGGC 58.993 47.619 0.00 0.00 0.00 4.52
340 348 3.000041 TGTGTATAGCAGCGTTCTTTGG 59.000 45.455 0.00 0.00 0.00 3.28
341 349 3.481951 CGTGTGTATAGCAGCGTTCTTTG 60.482 47.826 0.00 0.00 0.00 2.77
342 350 2.666508 CGTGTGTATAGCAGCGTTCTTT 59.333 45.455 0.00 0.00 0.00 2.52
343 351 2.094906 TCGTGTGTATAGCAGCGTTCTT 60.095 45.455 0.00 0.00 0.00 2.52
344 352 1.471287 TCGTGTGTATAGCAGCGTTCT 59.529 47.619 0.00 0.00 0.00 3.01
345 353 1.582502 GTCGTGTGTATAGCAGCGTTC 59.417 52.381 0.00 0.00 0.00 3.95
346 354 1.068125 TGTCGTGTGTATAGCAGCGTT 60.068 47.619 0.00 0.00 0.00 4.84
347 355 0.524414 TGTCGTGTGTATAGCAGCGT 59.476 50.000 0.00 0.00 0.00 5.07
348 356 1.583856 CTTGTCGTGTGTATAGCAGCG 59.416 52.381 0.00 0.00 0.00 5.18
349 357 2.607187 ACTTGTCGTGTGTATAGCAGC 58.393 47.619 0.00 0.00 0.00 5.25
350 358 4.740205 CCATACTTGTCGTGTGTATAGCAG 59.260 45.833 0.00 0.00 33.34 4.24
351 359 4.399934 TCCATACTTGTCGTGTGTATAGCA 59.600 41.667 0.00 0.00 33.34 3.49
352 360 4.738740 GTCCATACTTGTCGTGTGTATAGC 59.261 45.833 0.00 0.00 33.34 2.97
353 361 4.968181 CGTCCATACTTGTCGTGTGTATAG 59.032 45.833 0.00 0.00 33.34 1.31
354 362 4.635324 TCGTCCATACTTGTCGTGTGTATA 59.365 41.667 0.00 0.00 33.34 1.47
355 363 3.441222 TCGTCCATACTTGTCGTGTGTAT 59.559 43.478 0.00 0.00 33.34 2.29
356 364 2.813172 TCGTCCATACTTGTCGTGTGTA 59.187 45.455 0.00 0.00 33.34 2.90
357 365 1.610038 TCGTCCATACTTGTCGTGTGT 59.390 47.619 0.00 0.00 33.34 3.72
358 366 2.341318 TCGTCCATACTTGTCGTGTG 57.659 50.000 0.00 0.00 34.81 3.82
359 367 3.587797 AATCGTCCATACTTGTCGTGT 57.412 42.857 0.00 0.00 0.00 4.49
360 368 4.860352 TGTAAATCGTCCATACTTGTCGTG 59.140 41.667 0.00 0.00 0.00 4.35
361 369 4.860907 GTGTAAATCGTCCATACTTGTCGT 59.139 41.667 0.00 0.00 0.00 4.34
362 370 4.860352 TGTGTAAATCGTCCATACTTGTCG 59.140 41.667 0.00 0.00 0.00 4.35
363 371 5.220154 CGTGTGTAAATCGTCCATACTTGTC 60.220 44.000 0.00 0.00 0.00 3.18
364 372 4.624024 CGTGTGTAAATCGTCCATACTTGT 59.376 41.667 0.00 0.00 0.00 3.16
365 373 4.860352 TCGTGTGTAAATCGTCCATACTTG 59.140 41.667 0.00 0.00 0.00 3.16
366 374 5.063180 TCGTGTGTAAATCGTCCATACTT 57.937 39.130 0.00 0.00 0.00 2.24
367 375 4.707030 TCGTGTGTAAATCGTCCATACT 57.293 40.909 0.00 0.00 0.00 2.12
368 376 4.317839 GCATCGTGTGTAAATCGTCCATAC 60.318 45.833 0.00 0.00 0.00 2.39
369 377 3.799963 GCATCGTGTGTAAATCGTCCATA 59.200 43.478 0.00 0.00 0.00 2.74
370 378 2.607635 GCATCGTGTGTAAATCGTCCAT 59.392 45.455 0.00 0.00 0.00 3.41
371 379 1.996898 GCATCGTGTGTAAATCGTCCA 59.003 47.619 0.00 0.00 0.00 4.02
372 380 2.268298 AGCATCGTGTGTAAATCGTCC 58.732 47.619 0.00 0.00 0.00 4.79
373 381 3.242248 GGTAGCATCGTGTGTAAATCGTC 59.758 47.826 0.00 0.00 0.00 4.20
374 382 3.184541 GGTAGCATCGTGTGTAAATCGT 58.815 45.455 0.00 0.00 0.00 3.73
375 383 2.538449 GGGTAGCATCGTGTGTAAATCG 59.462 50.000 0.00 0.00 0.00 3.34
376 384 3.527533 TGGGTAGCATCGTGTGTAAATC 58.472 45.455 0.00 0.00 0.00 2.17
377 385 3.620427 TGGGTAGCATCGTGTGTAAAT 57.380 42.857 0.00 0.00 0.00 1.40
378 386 3.055747 TGATGGGTAGCATCGTGTGTAAA 60.056 43.478 0.00 0.00 32.04 2.01
379 387 2.498078 TGATGGGTAGCATCGTGTGTAA 59.502 45.455 0.00 0.00 32.04 2.41
380 388 2.104170 TGATGGGTAGCATCGTGTGTA 58.896 47.619 0.00 0.00 32.04 2.90
381 389 0.901827 TGATGGGTAGCATCGTGTGT 59.098 50.000 0.00 0.00 32.04 3.72
382 390 1.935873 CTTGATGGGTAGCATCGTGTG 59.064 52.381 0.00 0.00 32.04 3.82
383 391 1.831106 TCTTGATGGGTAGCATCGTGT 59.169 47.619 0.00 0.00 32.04 4.49
384 392 2.205074 GTCTTGATGGGTAGCATCGTG 58.795 52.381 0.00 0.00 32.04 4.35
385 393 1.202417 CGTCTTGATGGGTAGCATCGT 60.202 52.381 0.00 0.00 32.04 3.73
386 394 1.202417 ACGTCTTGATGGGTAGCATCG 60.202 52.381 0.00 0.00 32.04 3.84
387 395 2.474816 GACGTCTTGATGGGTAGCATC 58.525 52.381 8.70 0.00 0.00 3.91
388 396 1.139058 GGACGTCTTGATGGGTAGCAT 59.861 52.381 16.46 0.00 0.00 3.79
389 397 0.535335 GGACGTCTTGATGGGTAGCA 59.465 55.000 16.46 0.00 0.00 3.49
390 398 0.535335 TGGACGTCTTGATGGGTAGC 59.465 55.000 16.46 0.00 0.00 3.58
391 399 3.543680 AATGGACGTCTTGATGGGTAG 57.456 47.619 16.46 0.00 0.00 3.18
392 400 3.992943 AAATGGACGTCTTGATGGGTA 57.007 42.857 16.46 0.00 0.00 3.69
393 401 2.879103 AAATGGACGTCTTGATGGGT 57.121 45.000 16.46 0.00 0.00 4.51
394 402 3.605634 TGTAAATGGACGTCTTGATGGG 58.394 45.455 16.46 0.00 0.00 4.00
395 403 6.761242 TCTTATGTAAATGGACGTCTTGATGG 59.239 38.462 16.46 0.00 0.00 3.51
396 404 7.770801 TCTTATGTAAATGGACGTCTTGATG 57.229 36.000 16.46 0.00 0.00 3.07
402 410 9.909644 ACAGTATATCTTATGTAAATGGACGTC 57.090 33.333 7.13 7.13 0.00 4.34
412 420 9.239551 ACGGCTTGATACAGTATATCTTATGTA 57.760 33.333 0.00 0.00 33.04 2.29
413 421 8.123639 ACGGCTTGATACAGTATATCTTATGT 57.876 34.615 0.00 0.00 0.00 2.29
414 422 8.988064 AACGGCTTGATACAGTATATCTTATG 57.012 34.615 0.00 0.00 0.00 1.90
415 423 8.803235 TGAACGGCTTGATACAGTATATCTTAT 58.197 33.333 0.00 0.00 0.00 1.73
416 424 8.173542 TGAACGGCTTGATACAGTATATCTTA 57.826 34.615 0.00 0.00 0.00 2.10
417 425 7.050970 TGAACGGCTTGATACAGTATATCTT 57.949 36.000 0.00 0.00 0.00 2.40
418 426 6.650427 TGAACGGCTTGATACAGTATATCT 57.350 37.500 0.00 0.00 0.00 1.98
419 427 7.598869 TGATTGAACGGCTTGATACAGTATATC 59.401 37.037 0.00 0.00 0.00 1.63
420 428 7.441836 TGATTGAACGGCTTGATACAGTATAT 58.558 34.615 0.00 0.00 0.00 0.86
421 429 6.811954 TGATTGAACGGCTTGATACAGTATA 58.188 36.000 0.00 0.00 0.00 1.47
422 430 5.670485 TGATTGAACGGCTTGATACAGTAT 58.330 37.500 0.00 0.00 0.00 2.12
423 431 5.079689 TGATTGAACGGCTTGATACAGTA 57.920 39.130 0.00 0.00 0.00 2.74
424 432 3.935203 CTGATTGAACGGCTTGATACAGT 59.065 43.478 0.00 0.00 0.00 3.55
425 433 3.242543 GCTGATTGAACGGCTTGATACAG 60.243 47.826 0.00 0.00 38.89 2.74
426 434 2.677836 GCTGATTGAACGGCTTGATACA 59.322 45.455 0.00 0.00 38.89 2.29
427 435 2.032178 GGCTGATTGAACGGCTTGATAC 59.968 50.000 0.00 0.00 41.36 2.24
428 436 2.288666 GGCTGATTGAACGGCTTGATA 58.711 47.619 0.00 0.00 41.36 2.15
429 437 1.098050 GGCTGATTGAACGGCTTGAT 58.902 50.000 0.00 0.00 41.36 2.57
430 438 0.250684 TGGCTGATTGAACGGCTTGA 60.251 50.000 0.00 0.00 41.36 3.02
431 439 0.813184 ATGGCTGATTGAACGGCTTG 59.187 50.000 0.00 0.00 41.36 4.01
432 440 1.098050 GATGGCTGATTGAACGGCTT 58.902 50.000 0.00 0.00 41.36 4.35
433 441 1.091771 CGATGGCTGATTGAACGGCT 61.092 55.000 0.00 0.00 41.36 5.52
434 442 1.353103 CGATGGCTGATTGAACGGC 59.647 57.895 0.00 0.00 40.94 5.68
435 443 0.374758 CACGATGGCTGATTGAACGG 59.625 55.000 0.00 0.00 0.00 4.44
436 444 0.247814 GCACGATGGCTGATTGAACG 60.248 55.000 0.00 0.00 0.00 3.95
437 445 0.804364 TGCACGATGGCTGATTGAAC 59.196 50.000 0.00 0.00 34.04 3.18
438 446 1.753930 ATGCACGATGGCTGATTGAA 58.246 45.000 0.00 0.00 34.04 2.69
439 447 2.158914 ACTATGCACGATGGCTGATTGA 60.159 45.455 0.00 0.00 34.04 2.57
440 448 2.216046 ACTATGCACGATGGCTGATTG 58.784 47.619 0.00 0.00 34.04 2.67
441 449 2.627515 ACTATGCACGATGGCTGATT 57.372 45.000 0.00 0.00 34.04 2.57
442 450 2.487934 GAACTATGCACGATGGCTGAT 58.512 47.619 0.00 0.00 34.04 2.90
443 451 1.802508 CGAACTATGCACGATGGCTGA 60.803 52.381 0.00 0.00 34.04 4.26
444 452 0.578683 CGAACTATGCACGATGGCTG 59.421 55.000 0.00 0.00 34.04 4.85
445 453 0.530650 CCGAACTATGCACGATGGCT 60.531 55.000 0.00 0.00 34.04 4.75
446 454 1.498865 CCCGAACTATGCACGATGGC 61.499 60.000 0.00 0.00 0.00 4.40
447 455 1.498865 GCCCGAACTATGCACGATGG 61.499 60.000 0.00 0.00 0.00 3.51
448 456 1.821241 CGCCCGAACTATGCACGATG 61.821 60.000 0.00 0.00 0.00 3.84
449 457 1.591594 CGCCCGAACTATGCACGAT 60.592 57.895 0.00 0.00 0.00 3.73
450 458 2.202690 CGCCCGAACTATGCACGA 60.203 61.111 0.00 0.00 0.00 4.35
451 459 3.261951 CCGCCCGAACTATGCACG 61.262 66.667 0.00 0.00 0.00 5.34
452 460 2.895372 CCCGCCCGAACTATGCAC 60.895 66.667 0.00 0.00 0.00 4.57
453 461 4.849310 GCCCGCCCGAACTATGCA 62.849 66.667 0.00 0.00 0.00 3.96
454 462 4.849310 TGCCCGCCCGAACTATGC 62.849 66.667 0.00 0.00 0.00 3.14
455 463 2.895372 GTGCCCGCCCGAACTATG 60.895 66.667 0.00 0.00 0.00 2.23
456 464 3.081409 AGTGCCCGCCCGAACTAT 61.081 61.111 0.00 0.00 0.00 2.12
457 465 4.077184 CAGTGCCCGCCCGAACTA 62.077 66.667 0.00 0.00 0.00 2.24
470 478 2.543687 CTACTGGGCGGACGACAGTG 62.544 65.000 23.23 14.03 44.48 3.66
471 479 2.282674 TACTGGGCGGACGACAGT 60.283 61.111 20.31 20.31 46.30 3.55
472 480 1.874345 AACTACTGGGCGGACGACAG 61.874 60.000 12.91 12.91 38.19 3.51
473 481 1.466025 AAACTACTGGGCGGACGACA 61.466 55.000 0.00 0.00 0.00 4.35
474 482 0.735287 GAAACTACTGGGCGGACGAC 60.735 60.000 0.00 0.00 0.00 4.34
475 483 1.588082 GAAACTACTGGGCGGACGA 59.412 57.895 0.00 0.00 0.00 4.20
476 484 1.804326 CGAAACTACTGGGCGGACG 60.804 63.158 0.00 0.00 0.00 4.79
477 485 0.458025 CTCGAAACTACTGGGCGGAC 60.458 60.000 0.00 0.00 0.00 4.79
478 486 0.609957 TCTCGAAACTACTGGGCGGA 60.610 55.000 0.00 0.00 0.00 5.54
479 487 0.179134 CTCTCGAAACTACTGGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
480 488 0.802607 GCTCTCGAAACTACTGGGCG 60.803 60.000 0.00 0.00 0.00 6.13
481 489 0.460459 GGCTCTCGAAACTACTGGGC 60.460 60.000 0.00 0.00 0.00 5.36
482 490 0.895530 TGGCTCTCGAAACTACTGGG 59.104 55.000 0.00 0.00 0.00 4.45
483 491 2.743636 TTGGCTCTCGAAACTACTGG 57.256 50.000 0.00 0.00 0.00 4.00
484 492 3.181516 GCATTTGGCTCTCGAAACTACTG 60.182 47.826 0.00 0.00 40.25 2.74
485 493 3.003480 GCATTTGGCTCTCGAAACTACT 58.997 45.455 0.00 0.00 40.25 2.57
486 494 3.391227 GCATTTGGCTCTCGAAACTAC 57.609 47.619 0.00 0.00 40.25 2.73
494 502 8.045401 GTACGAGTACTATAGCATTTGGCTCTC 61.045 44.444 0.00 0.00 41.52 3.20
495 503 6.294065 GTACGAGTACTATAGCATTTGGCTCT 60.294 42.308 0.00 0.00 41.52 4.09
509 517 2.209838 CGGGAGACGTACGAGTACTA 57.790 55.000 24.41 0.00 37.93 1.82
538 546 3.196207 ATGGCCAAGTGGTGCGAGT 62.196 57.895 10.96 0.00 37.57 4.18
585 593 3.430218 GGTGACGAGTGAATGAGAACAAG 59.570 47.826 0.00 0.00 0.00 3.16
619 627 0.446616 GAGTTTTGACCCGCGGAATC 59.553 55.000 30.73 23.81 0.00 2.52
684 695 0.251077 CCCAGGCTTTCTCACTTGCT 60.251 55.000 0.00 0.00 0.00 3.91
705 716 2.028930 GGTACGATGGCCCTATCAGAAG 60.029 54.545 0.00 0.00 0.00 2.85
708 719 1.273606 CTGGTACGATGGCCCTATCAG 59.726 57.143 0.00 0.00 0.00 2.90
732 743 1.959899 GCGGCGACACACAAGATCAG 61.960 60.000 12.98 0.00 0.00 2.90
756 767 4.537015 CGAAATCGGAAGGATTAAATGCC 58.463 43.478 0.00 0.00 44.59 4.40
768 779 1.395608 GGACGAAATGCGAAATCGGAA 59.604 47.619 0.14 0.00 44.19 4.30
769 780 1.003851 GGACGAAATGCGAAATCGGA 58.996 50.000 4.84 1.67 44.57 4.55
812 823 1.146637 GCAATCTAGCATGCTCTCCG 58.853 55.000 26.57 11.48 39.46 4.63
862 873 9.549509 CTCCGTATTTTAAACGAATCAAAATCA 57.450 29.630 0.00 0.00 42.90 2.57
898 911 2.621070 AGAAGCTAGAAGGGGACACAA 58.379 47.619 0.00 0.00 0.00 3.33
937 950 2.098117 GGAAGAAGCGGACAAATCATGG 59.902 50.000 0.00 0.00 0.00 3.66
939 952 3.356529 AGGAAGAAGCGGACAAATCAT 57.643 42.857 0.00 0.00 0.00 2.45
940 953 2.859165 AGGAAGAAGCGGACAAATCA 57.141 45.000 0.00 0.00 0.00 2.57
965 979 1.294780 GCTCCCACCTCAGTCAGTG 59.705 63.158 0.00 0.00 0.00 3.66
986 1000 2.681706 CAGGCATCCACTAGATTAGCG 58.318 52.381 0.00 0.00 30.59 4.26
1015 1029 1.674221 CCAGCTACAACACTCAGCCTC 60.674 57.143 0.00 0.00 35.88 4.70
1020 1034 0.599991 CGCACCAGCTACAACACTCA 60.600 55.000 0.00 0.00 39.10 3.41
1021 1035 0.319555 TCGCACCAGCTACAACACTC 60.320 55.000 0.00 0.00 39.10 3.51
1022 1036 0.600255 GTCGCACCAGCTACAACACT 60.600 55.000 0.00 0.00 36.53 3.55
1240 1254 3.650950 GGAGAAGCAGGGGTGGCA 61.651 66.667 0.00 0.00 0.00 4.92
1446 1468 0.109272 GAACCGTCGCATCTGACAGA 60.109 55.000 7.80 7.80 38.84 3.41
1668 2050 2.499205 CTGATCTTGGGCGCCGTA 59.501 61.111 22.54 9.49 0.00 4.02
1698 2088 1.963338 AAGCAAGCAGAGCACGGTC 60.963 57.895 0.00 0.00 0.00 4.79
2721 3149 3.438434 GCTTCTCCTTGCTTTACTTCCTG 59.562 47.826 0.00 0.00 0.00 3.86
2986 3421 6.304356 TCAAAACTCAGCAGACAATACAAG 57.696 37.500 0.00 0.00 0.00 3.16
3010 3445 3.145286 GAGATCAGAATTGGCCCTAAGC 58.855 50.000 0.00 0.00 42.60 3.09
3011 3446 4.141528 ACAGAGATCAGAATTGGCCCTAAG 60.142 45.833 0.00 0.00 0.00 2.18
3041 3476 7.995488 GCCCCAGATTCTTGCTAATATGTATAT 59.005 37.037 0.00 0.00 0.00 0.86
3043 3478 6.183347 GCCCCAGATTCTTGCTAATATGTAT 58.817 40.000 0.00 0.00 0.00 2.29
3044 3479 5.073008 TGCCCCAGATTCTTGCTAATATGTA 59.927 40.000 0.00 0.00 0.00 2.29
3045 3480 4.141181 TGCCCCAGATTCTTGCTAATATGT 60.141 41.667 0.00 0.00 0.00 2.29
3057 3492 1.030457 CAGATTGCTGCCCCAGATTC 58.970 55.000 0.00 0.00 34.95 2.52
3162 3741 2.568029 CGCGCGTGTGATTTGTCG 60.568 61.111 24.19 0.00 0.00 4.35
3189 3768 5.808540 CGGCAATGACATCAAGAAAAATCAT 59.191 36.000 0.00 0.00 0.00 2.45
3200 3779 1.449423 CCGGACGGCAATGACATCA 60.449 57.895 0.00 0.00 0.00 3.07
3205 3784 0.461163 CATGTACCGGACGGCAATGA 60.461 55.000 9.46 0.00 39.32 2.57
3291 3875 6.238484 GGTTGGCTAATCAATATGTCTGTGAC 60.238 42.308 0.00 0.00 0.00 3.67
3297 3881 6.560253 ATTCGGTTGGCTAATCAATATGTC 57.440 37.500 0.00 0.00 0.00 3.06
3299 3883 7.206981 AGAATTCGGTTGGCTAATCAATATG 57.793 36.000 0.00 0.00 0.00 1.78
3300 3884 7.823745 AAGAATTCGGTTGGCTAATCAATAT 57.176 32.000 0.00 0.00 0.00 1.28
3301 3885 8.783093 CATAAGAATTCGGTTGGCTAATCAATA 58.217 33.333 0.00 0.00 0.00 1.90
3302 3886 7.285401 ACATAAGAATTCGGTTGGCTAATCAAT 59.715 33.333 0.00 0.00 0.00 2.57
3303 3887 6.601613 ACATAAGAATTCGGTTGGCTAATCAA 59.398 34.615 0.00 0.00 0.00 2.57
3304 3888 6.119536 ACATAAGAATTCGGTTGGCTAATCA 58.880 36.000 0.00 0.00 0.00 2.57
3305 3889 6.619801 ACATAAGAATTCGGTTGGCTAATC 57.380 37.500 0.00 0.00 0.00 1.75
3306 3890 7.339466 AGAAACATAAGAATTCGGTTGGCTAAT 59.661 33.333 0.00 0.00 0.00 1.73
3307 3891 6.657541 AGAAACATAAGAATTCGGTTGGCTAA 59.342 34.615 0.00 0.00 0.00 3.09
3308 3892 6.177610 AGAAACATAAGAATTCGGTTGGCTA 58.822 36.000 0.00 0.00 0.00 3.93
3309 3893 5.010282 AGAAACATAAGAATTCGGTTGGCT 58.990 37.500 0.00 3.42 0.00 4.75
3310 3894 5.310720 AGAAACATAAGAATTCGGTTGGC 57.689 39.130 0.00 1.49 0.00 4.52
3311 3895 5.414454 TGGAGAAACATAAGAATTCGGTTGG 59.586 40.000 0.00 0.00 0.00 3.77
3312 3896 6.494893 TGGAGAAACATAAGAATTCGGTTG 57.505 37.500 0.00 1.74 0.00 3.77
3313 3897 8.840321 CATATGGAGAAACATAAGAATTCGGTT 58.160 33.333 0.00 1.34 36.94 4.44
3314 3898 8.210946 TCATATGGAGAAACATAAGAATTCGGT 58.789 33.333 2.13 0.00 36.94 4.69
3315 3899 8.607441 TCATATGGAGAAACATAAGAATTCGG 57.393 34.615 2.13 0.00 36.94 4.30
3338 3922 8.618677 GCATCTGAATACTTCATGAAGAAATCA 58.381 33.333 36.15 29.66 43.67 2.57
3339 3923 8.618677 TGCATCTGAATACTTCATGAAGAAATC 58.381 33.333 36.15 27.49 40.79 2.17
3340 3924 8.515695 TGCATCTGAATACTTCATGAAGAAAT 57.484 30.769 36.15 25.57 40.79 2.17
3341 3925 7.825761 TCTGCATCTGAATACTTCATGAAGAAA 59.174 33.333 36.15 24.67 40.79 2.52
3342 3926 7.333323 TCTGCATCTGAATACTTCATGAAGAA 58.667 34.615 36.15 17.21 40.79 2.52
3343 3927 6.881570 TCTGCATCTGAATACTTCATGAAGA 58.118 36.000 36.15 21.97 40.79 2.87
3344 3928 7.441458 TCATCTGCATCTGAATACTTCATGAAG 59.559 37.037 29.74 29.74 43.79 3.02
3345 3929 7.277396 TCATCTGCATCTGAATACTTCATGAA 58.723 34.615 8.12 8.12 39.30 2.57
3346 3930 6.823497 TCATCTGCATCTGAATACTTCATGA 58.177 36.000 0.00 0.00 39.30 3.07
3347 3931 7.361286 CCATCATCTGCATCTGAATACTTCATG 60.361 40.741 2.82 0.00 39.30 3.07
3348 3932 6.655425 CCATCATCTGCATCTGAATACTTCAT 59.345 38.462 2.82 0.00 39.30 2.57
3349 3933 5.995897 CCATCATCTGCATCTGAATACTTCA 59.004 40.000 2.82 0.00 38.17 3.02
3350 3934 5.996513 ACCATCATCTGCATCTGAATACTTC 59.003 40.000 2.82 0.00 0.00 3.01
3351 3935 5.938279 ACCATCATCTGCATCTGAATACTT 58.062 37.500 2.82 0.00 0.00 2.24
3352 3936 5.563876 ACCATCATCTGCATCTGAATACT 57.436 39.130 2.82 0.00 0.00 2.12
3353 3937 5.761726 TCAACCATCATCTGCATCTGAATAC 59.238 40.000 2.82 0.00 0.00 1.89
3354 3938 5.932455 TCAACCATCATCTGCATCTGAATA 58.068 37.500 2.82 0.00 0.00 1.75
3355 3939 4.788679 TCAACCATCATCTGCATCTGAAT 58.211 39.130 2.82 0.00 0.00 2.57
3356 3940 4.224991 TCAACCATCATCTGCATCTGAA 57.775 40.909 2.82 0.00 0.00 3.02
3357 3941 3.918294 TCAACCATCATCTGCATCTGA 57.082 42.857 1.29 1.29 0.00 3.27
3358 3942 4.134563 TGATCAACCATCATCTGCATCTG 58.865 43.478 0.00 0.00 36.51 2.90
3359 3943 4.432980 TGATCAACCATCATCTGCATCT 57.567 40.909 0.00 0.00 36.51 2.90
3360 3944 5.473846 AGATTGATCAACCATCATCTGCATC 59.526 40.000 11.07 0.00 41.42 3.91
3361 3945 5.241728 CAGATTGATCAACCATCATCTGCAT 59.758 40.000 17.19 0.00 41.42 3.96
3362 3946 4.578928 CAGATTGATCAACCATCATCTGCA 59.421 41.667 17.19 0.00 41.42 4.41
3363 3947 4.023107 CCAGATTGATCAACCATCATCTGC 60.023 45.833 21.32 1.37 41.42 4.26
3364 3948 5.374071 TCCAGATTGATCAACCATCATCTG 58.626 41.667 20.37 20.37 41.42 2.90
3365 3949 5.641789 TCCAGATTGATCAACCATCATCT 57.358 39.130 11.07 5.72 41.42 2.90
3366 3950 5.241064 CCTTCCAGATTGATCAACCATCATC 59.759 44.000 11.07 3.23 41.42 2.92
3367 3951 5.138276 CCTTCCAGATTGATCAACCATCAT 58.862 41.667 11.07 0.00 41.42 2.45
3368 3952 4.018141 ACCTTCCAGATTGATCAACCATCA 60.018 41.667 11.07 0.00 39.99 3.07
3369 3953 4.337555 CACCTTCCAGATTGATCAACCATC 59.662 45.833 11.07 4.79 0.00 3.51
3370 3954 4.018141 TCACCTTCCAGATTGATCAACCAT 60.018 41.667 11.07 0.00 0.00 3.55
3371 3955 3.330405 TCACCTTCCAGATTGATCAACCA 59.670 43.478 11.07 0.00 0.00 3.67
3372 3956 3.955471 TCACCTTCCAGATTGATCAACC 58.045 45.455 11.07 0.00 0.00 3.77
3373 3957 5.105997 CCTTTCACCTTCCAGATTGATCAAC 60.106 44.000 11.07 5.15 0.00 3.18
3374 3958 5.012239 CCTTTCACCTTCCAGATTGATCAA 58.988 41.667 11.26 11.26 0.00 2.57
3375 3959 4.043310 ACCTTTCACCTTCCAGATTGATCA 59.957 41.667 0.00 0.00 0.00 2.92
3376 3960 4.593956 ACCTTTCACCTTCCAGATTGATC 58.406 43.478 0.00 0.00 0.00 2.92
3377 3961 4.043310 TGACCTTTCACCTTCCAGATTGAT 59.957 41.667 0.00 0.00 0.00 2.57
3378 3962 3.394274 TGACCTTTCACCTTCCAGATTGA 59.606 43.478 0.00 0.00 0.00 2.57
3379 3963 3.754965 TGACCTTTCACCTTCCAGATTG 58.245 45.455 0.00 0.00 0.00 2.67
3380 3964 3.395941 ACTGACCTTTCACCTTCCAGATT 59.604 43.478 0.00 0.00 0.00 2.40
3381 3965 2.982488 ACTGACCTTTCACCTTCCAGAT 59.018 45.455 0.00 0.00 0.00 2.90
3382 3966 2.368875 GACTGACCTTTCACCTTCCAGA 59.631 50.000 0.00 0.00 0.00 3.86
3383 3967 2.370189 AGACTGACCTTTCACCTTCCAG 59.630 50.000 0.00 0.00 0.00 3.86
3384 3968 2.368875 GAGACTGACCTTTCACCTTCCA 59.631 50.000 0.00 0.00 0.00 3.53
3385 3969 2.289756 GGAGACTGACCTTTCACCTTCC 60.290 54.545 0.00 0.00 0.00 3.46
3386 3970 2.610727 CGGAGACTGACCTTTCACCTTC 60.611 54.545 0.00 0.00 0.00 3.46
3387 3971 1.344763 CGGAGACTGACCTTTCACCTT 59.655 52.381 0.00 0.00 0.00 3.50
3388 3972 0.969894 CGGAGACTGACCTTTCACCT 59.030 55.000 0.00 0.00 0.00 4.00
3389 3973 0.037232 CCGGAGACTGACCTTTCACC 60.037 60.000 0.00 0.00 0.00 4.02
3390 3974 0.670854 GCCGGAGACTGACCTTTCAC 60.671 60.000 5.05 0.00 0.00 3.18
3391 3975 1.118965 TGCCGGAGACTGACCTTTCA 61.119 55.000 5.05 0.00 0.00 2.69
3392 3976 0.034896 TTGCCGGAGACTGACCTTTC 59.965 55.000 5.05 0.00 0.00 2.62
3393 3977 0.693049 ATTGCCGGAGACTGACCTTT 59.307 50.000 5.05 0.00 0.00 3.11
3394 3978 0.250513 GATTGCCGGAGACTGACCTT 59.749 55.000 5.05 0.00 0.00 3.50
3395 3979 0.904865 TGATTGCCGGAGACTGACCT 60.905 55.000 5.05 0.00 0.00 3.85
3396 3980 0.179000 ATGATTGCCGGAGACTGACC 59.821 55.000 5.05 0.00 0.00 4.02
3397 3981 1.667724 CAATGATTGCCGGAGACTGAC 59.332 52.381 5.05 0.00 0.00 3.51
3398 3982 1.278985 ACAATGATTGCCGGAGACTGA 59.721 47.619 5.05 0.00 0.00 3.41
3399 3983 1.667724 GACAATGATTGCCGGAGACTG 59.332 52.381 5.05 0.00 0.00 3.51
3400 3984 1.556911 AGACAATGATTGCCGGAGACT 59.443 47.619 5.05 0.00 0.00 3.24
3401 3985 2.029838 AGACAATGATTGCCGGAGAC 57.970 50.000 5.05 0.00 0.00 3.36
3402 3986 2.027285 TCAAGACAATGATTGCCGGAGA 60.027 45.455 5.05 0.00 0.00 3.71
3403 3987 2.096496 GTCAAGACAATGATTGCCGGAG 59.904 50.000 5.05 0.00 0.00 4.63
3404 3988 2.083774 GTCAAGACAATGATTGCCGGA 58.916 47.619 5.05 0.00 0.00 5.14
3405 3989 2.086869 AGTCAAGACAATGATTGCCGG 58.913 47.619 4.84 0.00 0.00 6.13
3406 3990 5.755375 ACTATAGTCAAGACAATGATTGCCG 59.245 40.000 4.84 0.00 0.00 5.69
3407 3991 7.183580 GACTATAGTCAAGACAATGATTGCC 57.816 40.000 24.97 0.00 44.18 4.52
3422 4006 7.990917 TCACTCATCAGTTTGAGACTATAGTC 58.009 38.462 22.97 22.97 44.88 2.59
3423 4007 7.946381 TCACTCATCAGTTTGAGACTATAGT 57.054 36.000 4.68 4.68 44.88 2.12
3424 4008 8.628280 TCATCACTCATCAGTTTGAGACTATAG 58.372 37.037 8.36 0.00 44.88 1.31
3425 4009 8.525290 TCATCACTCATCAGTTTGAGACTATA 57.475 34.615 8.36 0.00 44.88 1.31
3426 4010 7.415592 TCATCACTCATCAGTTTGAGACTAT 57.584 36.000 8.36 0.00 44.88 2.12
3427 4011 6.626844 GCTCATCACTCATCAGTTTGAGACTA 60.627 42.308 9.79 0.00 44.88 2.59
3428 4012 5.722263 CTCATCACTCATCAGTTTGAGACT 58.278 41.667 8.36 0.00 44.88 3.24
3429 4013 4.329528 GCTCATCACTCATCAGTTTGAGAC 59.670 45.833 9.79 0.16 44.88 3.36
3430 4014 4.502016 GCTCATCACTCATCAGTTTGAGA 58.498 43.478 9.79 0.00 44.88 3.27
3431 4015 3.622163 GGCTCATCACTCATCAGTTTGAG 59.378 47.826 2.95 2.95 46.94 3.02
3432 4016 3.603532 GGCTCATCACTCATCAGTTTGA 58.396 45.455 0.00 0.00 0.00 2.69
3433 4017 2.350804 CGGCTCATCACTCATCAGTTTG 59.649 50.000 0.00 0.00 0.00 2.93
3434 4018 2.625737 CGGCTCATCACTCATCAGTTT 58.374 47.619 0.00 0.00 0.00 2.66
3435 4019 1.134580 CCGGCTCATCACTCATCAGTT 60.135 52.381 0.00 0.00 0.00 3.16
3436 4020 0.463204 CCGGCTCATCACTCATCAGT 59.537 55.000 0.00 0.00 0.00 3.41
3437 4021 0.463204 ACCGGCTCATCACTCATCAG 59.537 55.000 0.00 0.00 0.00 2.90
3438 4022 0.176449 CACCGGCTCATCACTCATCA 59.824 55.000 0.00 0.00 0.00 3.07
3439 4023 0.461548 TCACCGGCTCATCACTCATC 59.538 55.000 0.00 0.00 0.00 2.92
3440 4024 0.176680 GTCACCGGCTCATCACTCAT 59.823 55.000 0.00 0.00 0.00 2.90
3441 4025 1.591703 GTCACCGGCTCATCACTCA 59.408 57.895 0.00 0.00 0.00 3.41
3442 4026 1.517257 CGTCACCGGCTCATCACTC 60.517 63.158 0.00 0.00 0.00 3.51
3443 4027 1.323271 ATCGTCACCGGCTCATCACT 61.323 55.000 0.00 0.00 33.95 3.41
3444 4028 1.141881 ATCGTCACCGGCTCATCAC 59.858 57.895 0.00 0.00 33.95 3.06
3445 4029 1.141665 CATCGTCACCGGCTCATCA 59.858 57.895 0.00 0.00 33.95 3.07
3446 4030 1.141881 ACATCGTCACCGGCTCATC 59.858 57.895 0.00 0.00 33.95 2.92
3447 4031 1.153568 CACATCGTCACCGGCTCAT 60.154 57.895 0.00 0.00 33.95 2.90
3448 4032 2.261361 CACATCGTCACCGGCTCA 59.739 61.111 0.00 0.00 33.95 4.26
3449 4033 1.805945 GACACATCGTCACCGGCTC 60.806 63.158 0.00 0.00 44.69 4.70
3450 4034 2.261671 GACACATCGTCACCGGCT 59.738 61.111 0.00 0.00 44.69 5.52
3451 4035 3.179265 CGACACATCGTCACCGGC 61.179 66.667 0.00 0.00 45.70 6.13
3460 4044 2.673368 GTGAATTCCTGTCCGACACATC 59.327 50.000 2.27 0.00 33.23 3.06
3461 4045 2.303022 AGTGAATTCCTGTCCGACACAT 59.697 45.455 2.27 0.00 33.23 3.21
3462 4046 1.691976 AGTGAATTCCTGTCCGACACA 59.308 47.619 2.27 0.00 0.00 3.72
3463 4047 2.457366 AGTGAATTCCTGTCCGACAC 57.543 50.000 2.27 0.00 0.00 3.67
3464 4048 2.367241 TGAAGTGAATTCCTGTCCGACA 59.633 45.455 2.27 0.29 37.08 4.35
3465 4049 2.737252 GTGAAGTGAATTCCTGTCCGAC 59.263 50.000 2.27 0.00 37.08 4.79
3466 4050 2.632996 AGTGAAGTGAATTCCTGTCCGA 59.367 45.455 2.27 0.00 37.08 4.55
3467 4051 2.738846 CAGTGAAGTGAATTCCTGTCCG 59.261 50.000 2.27 0.00 37.08 4.79
3468 4052 3.999663 CTCAGTGAAGTGAATTCCTGTCC 59.000 47.826 2.27 0.00 37.42 4.02
3469 4053 3.434984 GCTCAGTGAAGTGAATTCCTGTC 59.565 47.826 2.27 0.00 37.42 3.51
3470 4054 3.406764 GCTCAGTGAAGTGAATTCCTGT 58.593 45.455 2.27 0.00 37.42 4.00
3471 4055 2.746362 GGCTCAGTGAAGTGAATTCCTG 59.254 50.000 2.27 2.04 37.08 3.86
3472 4056 2.373169 TGGCTCAGTGAAGTGAATTCCT 59.627 45.455 2.27 0.00 37.08 3.36
3473 4057 2.783135 TGGCTCAGTGAAGTGAATTCC 58.217 47.619 2.27 0.00 37.08 3.01
3474 4058 6.317140 TCAATATGGCTCAGTGAAGTGAATTC 59.683 38.462 0.00 0.00 38.50 2.17
3475 4059 6.182627 TCAATATGGCTCAGTGAAGTGAATT 58.817 36.000 0.00 0.00 0.00 2.17
3476 4060 5.748402 TCAATATGGCTCAGTGAAGTGAAT 58.252 37.500 0.00 0.00 0.00 2.57
3477 4061 5.164620 TCAATATGGCTCAGTGAAGTGAA 57.835 39.130 0.00 0.00 0.00 3.18
3478 4062 4.824479 TCAATATGGCTCAGTGAAGTGA 57.176 40.909 0.00 0.00 0.00 3.41
3479 4063 6.293298 GCTAATCAATATGGCTCAGTGAAGTG 60.293 42.308 0.00 0.00 0.00 3.16
3480 4064 5.762218 GCTAATCAATATGGCTCAGTGAAGT 59.238 40.000 0.00 0.00 0.00 3.01
3481 4065 5.761726 TGCTAATCAATATGGCTCAGTGAAG 59.238 40.000 0.00 0.00 0.00 3.02
3482 4066 5.683681 TGCTAATCAATATGGCTCAGTGAA 58.316 37.500 0.00 0.00 0.00 3.18
3483 4067 5.294734 TGCTAATCAATATGGCTCAGTGA 57.705 39.130 0.00 0.00 0.00 3.41
3484 4068 6.204359 GTTTGCTAATCAATATGGCTCAGTG 58.796 40.000 0.00 0.00 34.12 3.66
3485 4069 5.300286 GGTTTGCTAATCAATATGGCTCAGT 59.700 40.000 0.00 0.00 34.12 3.41
3486 4070 5.561532 CGGTTTGCTAATCAATATGGCTCAG 60.562 44.000 0.00 0.00 34.12 3.35
3487 4071 4.275689 CGGTTTGCTAATCAATATGGCTCA 59.724 41.667 0.00 0.00 34.12 4.26
3488 4072 4.515191 TCGGTTTGCTAATCAATATGGCTC 59.485 41.667 0.00 0.00 34.12 4.70
3491 4075 7.651808 AGAATTCGGTTTGCTAATCAATATGG 58.348 34.615 0.00 0.00 34.12 2.74
3572 4156 3.754965 TGACCTTTCACCTTCCAGATTG 58.245 45.455 0.00 0.00 0.00 2.67
3642 4229 2.048222 ACACATCGTCACCCGCTG 60.048 61.111 0.00 0.00 38.60 5.18
3679 4682 2.584166 GTGTTTGCACGTGAGAGATG 57.416 50.000 22.23 0.00 35.75 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.