Multiple sequence alignment - TraesCS1A01G188200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G188200 chr1A 100.000 5651 0 0 1 5651 340015592 340009942 0.000000e+00 10436.0
1 TraesCS1A01G188200 chr1A 88.535 157 12 3 3141 3291 171456553 171456397 9.670000e-43 185.0
2 TraesCS1A01G188200 chr1A 100.000 28 0 0 4455 4482 386422064 386422037 1.000000e-02 52.8
3 TraesCS1A01G188200 chr1D 94.276 2935 97 19 841 3751 260565158 260568045 0.000000e+00 4423.0
4 TraesCS1A01G188200 chr1D 97.759 714 15 1 3769 4482 260568165 260568877 0.000000e+00 1229.0
5 TraesCS1A01G188200 chr1D 88.284 845 45 20 4649 5462 260569182 260570003 0.000000e+00 963.0
6 TraesCS1A01G188200 chr1D 92.405 237 9 2 590 825 260564948 260565176 4.220000e-86 329.0
7 TraesCS1A01G188200 chr1D 97.458 118 3 0 4536 4653 260569010 260569127 9.600000e-48 202.0
8 TraesCS1A01G188200 chr1D 96.491 57 2 0 1 57 260564647 260564703 1.680000e-15 95.3
9 TraesCS1A01G188200 chr1D 100.000 28 0 0 4455 4482 238068744 238068771 1.000000e-02 52.8
10 TraesCS1A01G188200 chr1B 92.617 1693 84 15 841 2511 352393655 352391982 0.000000e+00 2396.0
11 TraesCS1A01G188200 chr1B 86.600 903 69 23 3769 4653 352390832 352389964 0.000000e+00 950.0
12 TraesCS1A01G188200 chr1B 95.464 463 11 5 4939 5397 352389659 352389203 0.000000e+00 730.0
13 TraesCS1A01G188200 chr1B 88.494 591 55 8 2560 3144 352391981 352391398 0.000000e+00 702.0
14 TraesCS1A01G188200 chr1B 88.347 472 26 13 3287 3751 352391400 352390951 1.790000e-149 540.0
15 TraesCS1A01G188200 chr1B 95.769 260 9 2 5393 5651 352388930 352388672 8.760000e-113 418.0
16 TraesCS1A01G188200 chr1B 87.783 221 16 4 4652 4868 352389906 352389693 1.220000e-61 248.0
17 TraesCS1A01G188200 chr1B 91.026 78 6 1 420 496 352395615 352395538 2.780000e-18 104.0
18 TraesCS1A01G188200 chr1B 97.436 39 1 0 1 39 352395657 352395619 3.650000e-07 67.6
19 TraesCS1A01G188200 chr1B 97.143 35 1 0 4448 4482 658716468 658716434 6.110000e-05 60.2
20 TraesCS1A01G188200 chr5A 96.639 357 12 0 54 410 63260681 63261037 1.360000e-165 593.0
21 TraesCS1A01G188200 chr5A 94.972 358 18 0 54 411 428142648 428142291 3.820000e-156 562.0
22 TraesCS1A01G188200 chr5A 94.693 358 19 0 54 411 637772497 637772140 1.780000e-154 556.0
23 TraesCS1A01G188200 chr7A 95.531 358 16 0 54 411 129521279 129520922 1.770000e-159 573.0
24 TraesCS1A01G188200 chr7A 93.855 358 21 1 54 411 729504984 729504628 6.440000e-149 538.0
25 TraesCS1A01G188200 chr7A 93.036 359 22 2 54 411 247210507 247210863 6.490000e-144 521.0
26 TraesCS1A01G188200 chr7A 91.228 57 3 1 650 704 32536036 32535980 6.070000e-10 76.8
27 TraesCS1A01G188200 chr7A 97.619 42 1 0 4496 4537 124792615 124792656 7.850000e-09 73.1
28 TraesCS1A01G188200 chr7A 94.872 39 2 0 13 51 702218024 702218062 1.700000e-05 62.1
29 TraesCS1A01G188200 chr7A 90.244 41 4 0 591 631 239214876 239214836 3.000000e-03 54.7
30 TraesCS1A01G188200 chr6A 95.291 361 15 1 53 411 335037004 335037364 6.350000e-159 571.0
31 TraesCS1A01G188200 chr6A 96.000 350 13 1 54 402 540319243 540318894 8.220000e-158 568.0
32 TraesCS1A01G188200 chr6A 90.265 113 9 1 490 600 473366941 473366829 4.560000e-31 147.0
33 TraesCS1A01G188200 chr4A 94.134 358 21 0 54 411 437504107 437504464 3.850000e-151 545.0
34 TraesCS1A01G188200 chr4A 90.385 52 4 1 651 701 122066343 122066394 3.650000e-07 67.6
35 TraesCS1A01G188200 chr4A 100.000 28 0 0 4455 4482 282086131 282086158 1.000000e-02 52.8
36 TraesCS1A01G188200 chr7D 93.458 107 6 1 494 599 168580016 168579910 2.110000e-34 158.0
37 TraesCS1A01G188200 chr7B 86.000 150 17 3 3143 3289 477814969 477814821 2.110000e-34 158.0
38 TraesCS1A01G188200 chr7B 85.714 154 16 4 3143 3290 505937466 505937313 2.110000e-34 158.0
39 TraesCS1A01G188200 chr7B 92.308 104 8 0 495 598 208139246 208139349 1.270000e-31 148.0
40 TraesCS1A01G188200 chr7B 100.000 28 0 0 4482 4509 721442032 721442005 1.000000e-02 52.8
41 TraesCS1A01G188200 chr4D 94.949 99 5 0 495 593 503153845 503153943 7.580000e-34 156.0
42 TraesCS1A01G188200 chr4D 90.741 108 10 0 488 595 54799345 54799452 1.640000e-30 145.0
43 TraesCS1A01G188200 chr4D 94.118 34 2 0 10 43 81634323 81634356 1.000000e-02 52.8
44 TraesCS1A01G188200 chr3A 85.621 153 16 3 3143 3289 582283367 582283215 7.580000e-34 156.0
45 TraesCS1A01G188200 chr3A 89.796 49 5 0 591 639 107035860 107035908 4.730000e-06 63.9
46 TraesCS1A01G188200 chr2A 86.395 147 14 3 3142 3282 79316158 79316012 7.580000e-34 156.0
47 TraesCS1A01G188200 chr2A 93.478 46 1 1 5 48 647763160 647763205 3.650000e-07 67.6
48 TraesCS1A01G188200 chr5D 93.269 104 7 0 492 595 558970534 558970431 2.730000e-33 154.0
49 TraesCS1A01G188200 chr5D 79.310 116 12 8 591 704 420925858 420925753 2.820000e-08 71.3
50 TraesCS1A01G188200 chr5D 78.689 122 14 7 594 704 522105061 522105181 2.820000e-08 71.3
51 TraesCS1A01G188200 chr5D 100.000 35 0 0 4507 4541 408542102 408542068 1.310000e-06 65.8
52 TraesCS1A01G188200 chr5D 95.000 40 2 0 663 702 254329162 254329201 4.730000e-06 63.9
53 TraesCS1A01G188200 chr5D 90.909 44 3 1 4497 4540 3552651 3552609 2.200000e-04 58.4
54 TraesCS1A01G188200 chr5D 89.130 46 4 1 657 702 322765940 322765896 7.910000e-04 56.5
55 TraesCS1A01G188200 chr2D 85.065 154 17 3 3142 3289 79056320 79056167 9.810000e-33 152.0
56 TraesCS1A01G188200 chr2D 88.983 118 11 2 476 591 646492336 646492453 1.640000e-30 145.0
57 TraesCS1A01G188200 chr2D 93.182 44 1 2 9 51 393207163 393207121 4.730000e-06 63.9
58 TraesCS1A01G188200 chr6B 90.991 111 10 0 491 601 661336074 661335964 3.530000e-32 150.0
59 TraesCS1A01G188200 chr3D 84.967 153 17 3 3143 3289 441388819 441388667 3.530000e-32 150.0
60 TraesCS1A01G188200 chr3D 82.659 173 22 5 3123 3289 170547119 170546949 4.560000e-31 147.0
61 TraesCS1A01G188200 chr3D 96.875 32 1 0 4510 4541 610002923 610002892 3.000000e-03 54.7
62 TraesCS1A01G188200 chr2B 90.826 109 9 1 495 602 768661125 768661017 1.640000e-30 145.0
63 TraesCS1A01G188200 chr3B 76.493 268 45 11 2740 2993 156915579 156915316 4.590000e-26 130.0
64 TraesCS1A01G188200 chr3B 86.154 65 7 2 648 710 149471639 149471575 1.020000e-07 69.4
65 TraesCS1A01G188200 chr3B 90.196 51 4 1 591 640 3221577 3221627 1.310000e-06 65.8
66 TraesCS1A01G188200 chr3B 90.476 42 4 0 591 632 508469452 508469493 7.910000e-04 56.5
67 TraesCS1A01G188200 chr4B 81.739 115 20 1 588 702 218654041 218654154 1.680000e-15 95.3
68 TraesCS1A01G188200 chr5B 90.476 42 4 0 592 633 680969769 680969728 7.910000e-04 56.5
69 TraesCS1A01G188200 chr6D 96.875 32 1 0 19 50 2365976 2365945 3.000000e-03 54.7
70 TraesCS1A01G188200 chr6D 92.105 38 3 0 9 46 322029987 322029950 3.000000e-03 54.7
71 TraesCS1A01G188200 chrUn 100.000 28 0 0 4482 4509 343014701 343014674 1.000000e-02 52.8
72 TraesCS1A01G188200 chrUn 100.000 28 0 0 4482 4509 343024946 343024973 1.000000e-02 52.8
73 TraesCS1A01G188200 chrUn 100.000 28 0 0 4482 4509 374493561 374493588 1.000000e-02 52.8
74 TraesCS1A01G188200 chrUn 100.000 28 0 0 4482 4509 387474665 387474638 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G188200 chr1A 340009942 340015592 5650 True 10436.000000 10436 100.0000 1 5651 1 chr1A.!!$R2 5650
1 TraesCS1A01G188200 chr1D 260564647 260570003 5356 False 1206.883333 4423 94.4455 1 5462 6 chr1D.!!$F2 5461
2 TraesCS1A01G188200 chr1B 352388672 352395657 6985 True 683.955556 2396 91.5040 1 5651 9 chr1B.!!$R2 5650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.240411 GACGAATAGCGCGACCCTAT 59.760 55.0 12.10 4.35 46.04 2.57 F
1243 2880 0.667487 TTGTTCGCCGAGAGCAAGAG 60.667 55.0 6.16 0.00 43.57 2.85 F
1894 3531 0.693622 TTTCTACATTGGGGCGGTCA 59.306 50.0 0.00 0.00 0.00 4.02 F
2998 4665 0.178953 AAGGGCAGCAGTTCCAACAT 60.179 50.0 0.00 0.00 0.00 2.71 F
4010 5799 1.230324 GTCTTGTGCACTTCTGGTCC 58.770 55.0 19.41 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 3954 0.034089 AGCAGCCCTGGTTGGTAATC 60.034 55.000 2.71 0.0 38.24 1.75 R
2298 3955 0.323725 CAGCAGCCCTGGTTGGTAAT 60.324 55.000 4.37 0.0 39.58 1.89 R
3208 4881 1.939934 CACATGGTGTGTTCGTTCACT 59.060 47.619 0.00 0.0 43.08 3.41 R
4327 6125 0.520404 GCCGCCTGATGCATATGAAG 59.480 55.000 6.97 0.0 41.33 3.02 R
5288 7241 0.539986 GTTGGGCCGAGACTTGGATA 59.460 55.000 13.45 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 5.651530 ACACATAGTATTCTTCACCTGACG 58.348 41.667 0.00 0.00 0.00 4.35
70 71 4.159693 ACATAGTATTCTTCACCTGACGCA 59.840 41.667 0.00 0.00 0.00 5.24
71 72 3.678056 AGTATTCTTCACCTGACGCAA 57.322 42.857 0.00 0.00 0.00 4.85
72 73 4.207891 AGTATTCTTCACCTGACGCAAT 57.792 40.909 0.00 0.00 0.00 3.56
73 74 4.184629 AGTATTCTTCACCTGACGCAATC 58.815 43.478 0.00 0.00 0.00 2.67
76 77 3.953712 TCTTCACCTGACGCAATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
78 79 1.990799 TCACCTGACGCAATCTTACG 58.009 50.000 0.00 0.00 0.00 3.18
80 81 1.654105 CACCTGACGCAATCTTACGAC 59.346 52.381 0.00 0.00 0.00 4.34
81 82 1.278238 CCTGACGCAATCTTACGACC 58.722 55.000 0.00 0.00 0.00 4.79
82 83 0.914551 CTGACGCAATCTTACGACCG 59.085 55.000 0.00 0.00 0.00 4.79
83 84 1.074319 TGACGCAATCTTACGACCGC 61.074 55.000 0.00 0.00 0.00 5.68
86 87 0.297820 CGCAATCTTACGACCGCTTC 59.702 55.000 0.00 0.00 0.00 3.86
87 88 1.355971 GCAATCTTACGACCGCTTCA 58.644 50.000 0.00 0.00 0.00 3.02
89 90 3.120792 GCAATCTTACGACCGCTTCATA 58.879 45.455 0.00 0.00 0.00 2.15
90 91 3.554324 GCAATCTTACGACCGCTTCATAA 59.446 43.478 0.00 0.00 0.00 1.90
91 92 4.033587 GCAATCTTACGACCGCTTCATAAA 59.966 41.667 0.00 0.00 0.00 1.40
93 94 6.073980 GCAATCTTACGACCGCTTCATAAATA 60.074 38.462 0.00 0.00 0.00 1.40
94 95 7.517734 GCAATCTTACGACCGCTTCATAAATAA 60.518 37.037 0.00 0.00 0.00 1.40
96 97 8.603242 ATCTTACGACCGCTTCATAAATAAAT 57.397 30.769 0.00 0.00 0.00 1.40
97 98 8.428186 TCTTACGACCGCTTCATAAATAAATT 57.572 30.769 0.00 0.00 0.00 1.82
98 99 9.531942 TCTTACGACCGCTTCATAAATAAATTA 57.468 29.630 0.00 0.00 0.00 1.40
99 100 9.577003 CTTACGACCGCTTCATAAATAAATTAC 57.423 33.333 0.00 0.00 0.00 1.89
100 101 6.642917 ACGACCGCTTCATAAATAAATTACG 58.357 36.000 0.00 0.00 0.00 3.18
103 104 7.637132 CGACCGCTTCATAAATAAATTACGTTT 59.363 33.333 0.00 0.00 0.00 3.60
104 105 8.609478 ACCGCTTCATAAATAAATTACGTTTG 57.391 30.769 0.00 0.00 0.00 2.93
196 197 9.909644 ACGTTATAAGACTAGAAATATCGCATT 57.090 29.630 0.00 0.00 0.00 3.56
228 229 8.922738 ATGTTTTACACTATGTTTTACGTTCG 57.077 30.769 0.00 0.00 0.00 3.95
229 230 7.904094 TGTTTTACACTATGTTTTACGTTCGT 58.096 30.769 0.00 2.91 0.00 3.85
230 231 9.025020 TGTTTTACACTATGTTTTACGTTCGTA 57.975 29.630 0.00 0.78 0.00 3.43
231 232 9.842444 GTTTTACACTATGTTTTACGTTCGTAA 57.158 29.630 12.72 12.72 0.00 3.18
321 322 6.779115 AAATAAGACAAAATTTGCGGAACC 57.221 33.333 5.52 0.00 0.00 3.62
322 323 5.722021 ATAAGACAAAATTTGCGGAACCT 57.278 34.783 5.52 0.00 0.00 3.50
324 325 5.523438 AAGACAAAATTTGCGGAACCTAA 57.477 34.783 5.52 0.00 0.00 2.69
325 326 5.523438 AGACAAAATTTGCGGAACCTAAA 57.477 34.783 5.52 0.00 0.00 1.85
326 327 5.908341 AGACAAAATTTGCGGAACCTAAAA 58.092 33.333 5.52 0.00 0.00 1.52
328 329 6.989759 AGACAAAATTTGCGGAACCTAAAAAT 59.010 30.769 5.52 0.00 0.00 1.82
329 330 8.145122 AGACAAAATTTGCGGAACCTAAAAATA 58.855 29.630 5.52 0.00 0.00 1.40
330 331 8.078959 ACAAAATTTGCGGAACCTAAAAATAC 57.921 30.769 5.52 0.00 0.00 1.89
331 332 6.937886 AAATTTGCGGAACCTAAAAATACG 57.062 33.333 0.00 0.00 0.00 3.06
332 333 4.422546 TTTGCGGAACCTAAAAATACGG 57.577 40.909 0.00 0.00 0.00 4.02
333 334 3.056588 TGCGGAACCTAAAAATACGGT 57.943 42.857 0.00 0.00 0.00 4.83
334 335 2.743126 TGCGGAACCTAAAAATACGGTG 59.257 45.455 0.00 0.00 0.00 4.94
335 336 2.476686 GCGGAACCTAAAAATACGGTGC 60.477 50.000 0.00 0.00 0.00 5.01
336 337 2.743126 CGGAACCTAAAAATACGGTGCA 59.257 45.455 0.00 0.00 0.00 4.57
337 338 3.375922 CGGAACCTAAAAATACGGTGCAT 59.624 43.478 0.00 0.00 0.00 3.96
338 339 4.142556 CGGAACCTAAAAATACGGTGCATT 60.143 41.667 0.00 0.00 0.00 3.56
339 340 5.099575 GGAACCTAAAAATACGGTGCATTG 58.900 41.667 0.00 0.00 0.00 2.82
340 341 5.106078 GGAACCTAAAAATACGGTGCATTGA 60.106 40.000 0.00 0.00 0.00 2.57
341 342 5.305139 ACCTAAAAATACGGTGCATTGAC 57.695 39.130 0.00 0.00 0.00 3.18
342 343 4.142773 ACCTAAAAATACGGTGCATTGACG 60.143 41.667 0.00 0.00 0.00 4.35
343 344 3.907894 AAAAATACGGTGCATTGACGT 57.092 38.095 12.08 12.08 43.88 4.34
344 345 3.465122 AAAATACGGTGCATTGACGTC 57.535 42.857 9.11 9.11 41.53 4.34
345 346 2.087501 AATACGGTGCATTGACGTCA 57.912 45.000 15.76 15.76 41.53 4.35
346 347 2.087501 ATACGGTGCATTGACGTCAA 57.912 45.000 31.41 31.41 41.53 3.18
347 348 1.867166 TACGGTGCATTGACGTCAAA 58.133 45.000 32.69 15.69 41.53 2.69
348 349 1.018148 ACGGTGCATTGACGTCAAAA 58.982 45.000 32.69 19.17 39.55 2.44
349 350 1.606668 ACGGTGCATTGACGTCAAAAT 59.393 42.857 32.69 16.45 39.55 1.82
350 351 2.809119 ACGGTGCATTGACGTCAAAATA 59.191 40.909 32.69 18.95 39.55 1.40
351 352 3.120338 ACGGTGCATTGACGTCAAAATAG 60.120 43.478 32.69 22.44 39.55 1.73
352 353 3.124466 CGGTGCATTGACGTCAAAATAGA 59.876 43.478 32.69 11.54 39.55 1.98
353 354 4.377943 CGGTGCATTGACGTCAAAATAGAA 60.378 41.667 32.69 15.88 39.55 2.10
354 355 5.457140 GGTGCATTGACGTCAAAATAGAAA 58.543 37.500 32.69 9.96 39.55 2.52
355 356 5.569059 GGTGCATTGACGTCAAAATAGAAAG 59.431 40.000 32.69 16.02 39.55 2.62
356 357 5.569059 GTGCATTGACGTCAAAATAGAAAGG 59.431 40.000 32.69 12.12 39.55 3.11
357 358 5.095490 GCATTGACGTCAAAATAGAAAGGG 58.905 41.667 32.69 13.54 39.55 3.95
358 359 5.640732 CATTGACGTCAAAATAGAAAGGGG 58.359 41.667 32.69 8.52 39.55 4.79
359 360 4.360951 TGACGTCAAAATAGAAAGGGGT 57.639 40.909 17.62 0.00 0.00 4.95
360 361 4.069304 TGACGTCAAAATAGAAAGGGGTG 58.931 43.478 17.62 0.00 0.00 4.61
361 362 4.202377 TGACGTCAAAATAGAAAGGGGTGA 60.202 41.667 17.62 0.00 0.00 4.02
362 363 4.721132 ACGTCAAAATAGAAAGGGGTGAA 58.279 39.130 0.00 0.00 0.00 3.18
363 364 4.760204 ACGTCAAAATAGAAAGGGGTGAAG 59.240 41.667 0.00 0.00 0.00 3.02
364 365 5.001232 CGTCAAAATAGAAAGGGGTGAAGA 58.999 41.667 0.00 0.00 0.00 2.87
365 366 5.472137 CGTCAAAATAGAAAGGGGTGAAGAA 59.528 40.000 0.00 0.00 0.00 2.52
366 367 6.151144 CGTCAAAATAGAAAGGGGTGAAGAAT 59.849 38.462 0.00 0.00 0.00 2.40
367 368 7.335924 CGTCAAAATAGAAAGGGGTGAAGAATA 59.664 37.037 0.00 0.00 0.00 1.75
368 369 9.020731 GTCAAAATAGAAAGGGGTGAAGAATAA 57.979 33.333 0.00 0.00 0.00 1.40
369 370 9.020731 TCAAAATAGAAAGGGGTGAAGAATAAC 57.979 33.333 0.00 0.00 0.00 1.89
370 371 9.025041 CAAAATAGAAAGGGGTGAAGAATAACT 57.975 33.333 0.00 0.00 0.00 2.24
375 376 7.347252 AGAAAGGGGTGAAGAATAACTATTCC 58.653 38.462 5.95 0.00 42.29 3.01
376 377 6.910259 AAGGGGTGAAGAATAACTATTCCT 57.090 37.500 5.95 0.00 42.29 3.36
377 378 6.502074 AGGGGTGAAGAATAACTATTCCTC 57.498 41.667 5.95 4.07 42.29 3.71
378 379 5.970640 AGGGGTGAAGAATAACTATTCCTCA 59.029 40.000 6.65 6.65 42.29 3.86
382 383 6.884472 TGAAGAATAACTATTCCTCACCCA 57.116 37.500 6.65 0.00 42.29 4.51
383 384 6.889198 TGAAGAATAACTATTCCTCACCCAG 58.111 40.000 6.65 0.00 42.29 4.45
384 385 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
385 386 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
386 387 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
387 388 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
388 389 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
389 390 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
396 397 1.905512 ACCCAGGGTGACGAATAGC 59.094 57.895 11.70 0.00 32.98 2.97
397 398 1.956629 ACCCAGGGTGACGAATAGCG 61.957 60.000 11.70 0.00 39.57 4.26
398 399 1.883084 CCAGGGTGACGAATAGCGC 60.883 63.158 0.00 0.00 46.04 5.92
399 400 2.104331 AGGGTGACGAATAGCGCG 59.896 61.111 0.00 0.00 46.04 6.86
400 401 2.103538 GGGTGACGAATAGCGCGA 59.896 61.111 12.10 0.00 46.04 5.87
401 402 2.228914 GGGTGACGAATAGCGCGAC 61.229 63.158 12.10 0.04 46.04 5.19
402 403 2.228914 GGTGACGAATAGCGCGACC 61.229 63.158 12.10 0.00 46.04 4.79
403 404 2.103538 TGACGAATAGCGCGACCC 59.896 61.111 12.10 0.00 46.04 4.46
404 405 2.412112 GACGAATAGCGCGACCCT 59.588 61.111 12.10 0.00 46.04 4.34
405 406 1.096967 TGACGAATAGCGCGACCCTA 61.097 55.000 12.10 1.47 46.04 3.53
406 407 0.240411 GACGAATAGCGCGACCCTAT 59.760 55.000 12.10 4.35 46.04 2.57
407 408 1.466167 GACGAATAGCGCGACCCTATA 59.534 52.381 12.10 0.00 46.04 1.31
408 409 2.089980 ACGAATAGCGCGACCCTATAT 58.910 47.619 12.10 0.00 46.04 0.86
409 410 3.273434 ACGAATAGCGCGACCCTATATA 58.727 45.455 12.10 0.00 46.04 0.86
410 411 3.881688 ACGAATAGCGCGACCCTATATAT 59.118 43.478 12.10 0.00 46.04 0.86
411 412 4.337555 ACGAATAGCGCGACCCTATATATT 59.662 41.667 12.10 0.00 46.04 1.28
412 413 5.163581 ACGAATAGCGCGACCCTATATATTT 60.164 40.000 12.10 0.00 46.04 1.40
413 414 5.398711 CGAATAGCGCGACCCTATATATTTC 59.601 44.000 12.10 1.67 0.00 2.17
414 415 6.466885 AATAGCGCGACCCTATATATTTCT 57.533 37.500 12.10 0.00 0.00 2.52
415 416 4.373348 AGCGCGACCCTATATATTTCTC 57.627 45.455 12.10 0.00 0.00 2.87
416 417 3.762288 AGCGCGACCCTATATATTTCTCA 59.238 43.478 12.10 0.00 0.00 3.27
417 418 4.402793 AGCGCGACCCTATATATTTCTCAT 59.597 41.667 12.10 0.00 0.00 2.90
427 428 9.521503 CCCTATATATTTCTCATGTACATGACG 57.478 37.037 30.29 24.57 42.42 4.35
508 510 7.287512 ACTTAATTAATACTCTCTCCGTCCC 57.712 40.000 0.00 0.00 0.00 4.46
509 511 6.837568 ACTTAATTAATACTCTCTCCGTCCCA 59.162 38.462 0.00 0.00 0.00 4.37
510 512 7.343833 ACTTAATTAATACTCTCTCCGTCCCAA 59.656 37.037 0.00 0.00 0.00 4.12
511 513 6.555463 AATTAATACTCTCTCCGTCCCAAA 57.445 37.500 0.00 0.00 0.00 3.28
512 514 6.555463 ATTAATACTCTCTCCGTCCCAAAA 57.445 37.500 0.00 0.00 0.00 2.44
513 515 6.555463 TTAATACTCTCTCCGTCCCAAAAT 57.445 37.500 0.00 0.00 0.00 1.82
514 516 7.664552 TTAATACTCTCTCCGTCCCAAAATA 57.335 36.000 0.00 0.00 0.00 1.40
515 517 6.555463 AATACTCTCTCCGTCCCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
516 518 4.473477 ACTCTCTCCGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
517 519 3.838903 ACTCTCTCCGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
518 520 4.184629 CTCTCTCCGTCCCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
519 521 3.581332 TCTCTCCGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
520 522 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
521 523 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
522 524 4.041198 TCTCCGTCCCAAAATAAGTGTCTT 59.959 41.667 0.00 0.00 0.00 3.01
523 525 4.721132 TCCGTCCCAAAATAAGTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
524 526 5.867330 TCCGTCCCAAAATAAGTGTCTTTA 58.133 37.500 0.00 0.00 0.00 1.85
525 527 5.702209 TCCGTCCCAAAATAAGTGTCTTTAC 59.298 40.000 0.00 0.00 0.00 2.01
526 528 5.106436 CCGTCCCAAAATAAGTGTCTTTACC 60.106 44.000 0.00 0.00 0.00 2.85
527 529 5.704053 CGTCCCAAAATAAGTGTCTTTACCT 59.296 40.000 0.00 0.00 0.00 3.08
528 530 6.206048 CGTCCCAAAATAAGTGTCTTTACCTT 59.794 38.462 0.00 0.00 0.00 3.50
529 531 7.388500 CGTCCCAAAATAAGTGTCTTTACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
530 532 8.727910 GTCCCAAAATAAGTGTCTTTACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
531 533 8.442374 TCCCAAAATAAGTGTCTTTACCTTAGT 58.558 33.333 0.00 0.00 0.00 2.24
532 534 9.729281 CCCAAAATAAGTGTCTTTACCTTAGTA 57.271 33.333 0.00 0.00 0.00 1.82
541 543 9.623000 AGTGTCTTTACCTTAGTACAATTTTGT 57.377 29.630 1.08 1.08 44.86 2.83
582 584 7.653767 AGTTAAGACACTTATTTTGAGACGG 57.346 36.000 0.00 0.00 0.00 4.79
583 585 7.439381 AGTTAAGACACTTATTTTGAGACGGA 58.561 34.615 0.00 0.00 0.00 4.69
584 586 7.599245 AGTTAAGACACTTATTTTGAGACGGAG 59.401 37.037 0.00 0.00 0.00 4.63
585 587 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
586 588 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
587 589 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
588 590 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
794 829 3.499737 GACATTGGCGCGTCCTGG 61.500 66.667 8.89 0.00 35.26 4.45
813 848 3.892581 GCAAGGGCCGTGCTATGC 61.893 66.667 32.91 17.18 39.00 3.14
1101 2738 2.223203 GGTTGCTCGCATGATTTCTCTG 60.223 50.000 0.00 0.00 0.00 3.35
1102 2739 2.674852 GTTGCTCGCATGATTTCTCTGA 59.325 45.455 0.00 0.00 0.00 3.27
1105 2742 3.558829 TGCTCGCATGATTTCTCTGATTC 59.441 43.478 0.00 0.00 0.00 2.52
1111 2748 4.333649 GCATGATTTCTCTGATTCGTGGAA 59.666 41.667 0.00 0.00 0.00 3.53
1243 2880 0.667487 TTGTTCGCCGAGAGCAAGAG 60.667 55.000 6.16 0.00 43.57 2.85
1331 2968 2.105128 CCCTACGCCGAGAAGCTG 59.895 66.667 0.00 0.00 0.00 4.24
1336 2973 4.116328 CGCCGAGAAGCTGGACGA 62.116 66.667 7.98 0.00 0.00 4.20
1386 3023 5.010516 CAGTTCCTGATCTACCTGAATCGAT 59.989 44.000 0.00 0.00 32.44 3.59
1400 3037 7.106239 ACCTGAATCGATCTCTGTGTTAAATT 58.894 34.615 0.00 0.00 0.00 1.82
1411 3048 8.738199 TCTCTGTGTTAAATTCAAGTAGTACG 57.262 34.615 0.00 0.00 0.00 3.67
1412 3049 8.355169 TCTCTGTGTTAAATTCAAGTAGTACGT 58.645 33.333 0.00 0.00 0.00 3.57
1413 3050 9.616634 CTCTGTGTTAAATTCAAGTAGTACGTA 57.383 33.333 0.00 0.00 0.00 3.57
1473 3110 9.838339 AATAGTATTGTTTACTGAGATGGGAAG 57.162 33.333 0.00 0.00 0.00 3.46
1480 3117 1.980765 ACTGAGATGGGAAGCTGTTCA 59.019 47.619 0.00 0.00 33.93 3.18
1484 3121 3.006247 GAGATGGGAAGCTGTTCACTTC 58.994 50.000 0.00 0.00 39.50 3.01
1519 3156 9.790389 TTGTTTACGACTTGTGACATTTAAAAT 57.210 25.926 0.00 0.00 31.03 1.82
1693 3330 7.278203 GGGAGAGAGTTAGTTAGTTACAAATGC 59.722 40.741 0.00 0.00 0.00 3.56
1775 3412 2.515057 TTGAAGCAACCACCGCGT 60.515 55.556 4.92 0.00 0.00 6.01
1894 3531 0.693622 TTTCTACATTGGGGCGGTCA 59.306 50.000 0.00 0.00 0.00 4.02
1957 3594 3.582714 AAGGTGCTTAATCTGCTTTGC 57.417 42.857 0.00 0.00 0.00 3.68
2066 3704 4.405116 TTGCCTTGCTTTTTCTCAACAT 57.595 36.364 0.00 0.00 0.00 2.71
2079 3717 9.833894 CTTTTTCTCAACATACAAAATGAAACG 57.166 29.630 0.00 0.00 0.00 3.60
2105 3745 4.908736 TGATTAATTTAACTGCAGAGCGC 58.091 39.130 23.35 0.00 42.89 5.92
2143 3783 5.130975 AGGATACAATGAAGCTGTACCATGA 59.869 40.000 0.00 0.00 41.41 3.07
2213 3870 9.764870 CGATCAATTATATTACCAAGAGCATTG 57.235 33.333 0.00 0.00 0.00 2.82
2221 3878 2.157738 ACCAAGAGCATTGCTTCAGAC 58.842 47.619 13.35 0.00 39.88 3.51
2231 3888 4.318332 CATTGCTTCAGACTTCCAGTGTA 58.682 43.478 0.00 0.00 0.00 2.90
2246 3903 5.804639 TCCAGTGTAGCATTTGTATGTTCT 58.195 37.500 0.00 0.00 34.12 3.01
2270 3927 9.965824 TCTTTTTATTGAGCTTTCTAAAACAGG 57.034 29.630 0.00 0.00 0.00 4.00
2271 3928 9.965824 CTTTTTATTGAGCTTTCTAAAACAGGA 57.034 29.630 0.00 0.00 0.00 3.86
2281 3938 9.301897 AGCTTTCTAAAACAGGAATAGTCAATT 57.698 29.630 0.00 0.00 0.00 2.32
2292 3949 8.912988 ACAGGAATAGTCAATTTTGTTTCTGAA 58.087 29.630 6.65 0.00 0.00 3.02
2293 3950 9.918630 CAGGAATAGTCAATTTTGTTTCTGAAT 57.081 29.630 0.00 0.00 0.00 2.57
2537 4194 5.181748 TGCTTTATGTTGCCTTTTGTTTGT 58.818 33.333 0.00 0.00 0.00 2.83
2589 4256 4.755123 GGCTTCTTTCACACACTAGCTTAA 59.245 41.667 0.00 0.00 0.00 1.85
2950 4617 1.508088 GCCCAAAAGCGATCACCTG 59.492 57.895 0.00 0.00 0.00 4.00
2998 4665 0.178953 AAGGGCAGCAGTTCCAACAT 60.179 50.000 0.00 0.00 0.00 2.71
3009 4676 2.601067 CCAACATGGGCAGTGGCA 60.601 61.111 19.48 5.16 43.71 4.92
3118 4786 4.004196 ACTGTAGGTGAAGTAAACAGGC 57.996 45.455 5.83 0.00 41.43 4.85
3153 4826 5.988865 TCCTTACATAGTACTCCCTCTGA 57.011 43.478 0.00 0.00 0.00 3.27
3206 4879 5.984695 ATATGCACTACATACGGACTGAT 57.015 39.130 0.00 0.00 43.99 2.90
3207 4880 3.436700 TGCACTACATACGGACTGATG 57.563 47.619 0.00 0.00 0.00 3.07
3208 4881 3.020984 TGCACTACATACGGACTGATGA 58.979 45.455 0.00 0.00 0.00 2.92
3241 4916 6.466308 CACACCATGTGTTATATACATCCG 57.534 41.667 0.00 0.00 45.08 4.18
3297 4972 3.361281 ACGGAAGGGGTATTCCTTTTC 57.639 47.619 4.15 0.00 46.31 2.29
3508 5183 8.915871 TCTTCAACTTCATTTTTGTTCTCTTG 57.084 30.769 0.00 0.00 0.00 3.02
3751 5432 6.859420 TCGTCATGTTGATGGGTAAATATG 57.141 37.500 0.00 0.00 34.27 1.78
3753 5434 6.826231 TCGTCATGTTGATGGGTAAATATGTT 59.174 34.615 0.00 0.00 34.27 2.71
3754 5435 6.912051 CGTCATGTTGATGGGTAAATATGTTG 59.088 38.462 0.00 0.00 29.96 3.33
3755 5436 6.697019 GTCATGTTGATGGGTAAATATGTTGC 59.303 38.462 0.00 0.00 0.00 4.17
3756 5437 6.379417 TCATGTTGATGGGTAAATATGTTGCA 59.621 34.615 0.00 0.00 0.00 4.08
3757 5438 5.960113 TGTTGATGGGTAAATATGTTGCAC 58.040 37.500 0.00 0.00 0.00 4.57
3760 5441 7.066887 TGTTGATGGGTAAATATGTTGCACTAG 59.933 37.037 0.00 0.00 0.00 2.57
3764 5445 6.658849 TGGGTAAATATGTTGCACTAGACAT 58.341 36.000 6.93 6.93 39.62 3.06
3765 5446 7.797062 TGGGTAAATATGTTGCACTAGACATA 58.203 34.615 10.55 10.55 41.46 2.29
3766 5447 8.436778 TGGGTAAATATGTTGCACTAGACATAT 58.563 33.333 13.59 13.59 46.18 1.78
3767 5448 8.721478 GGGTAAATATGTTGCACTAGACATATG 58.279 37.037 18.10 0.00 44.48 1.78
3877 5666 3.334691 CGATTTGCTAGAAAGGTGGACA 58.665 45.455 0.00 0.00 0.00 4.02
3983 5772 2.329267 TGCTCAGAAGGTTCTTCTGGA 58.671 47.619 27.22 17.32 44.43 3.86
4010 5799 1.230324 GTCTTGTGCACTTCTGGTCC 58.770 55.000 19.41 0.00 0.00 4.46
4223 6013 4.327982 TCTCTTGAAGAAGTCAGGTGTG 57.672 45.455 0.00 0.00 37.61 3.82
4327 6125 7.075741 AGCATGTTTTATCTTTTACACACGTC 58.924 34.615 0.00 0.00 0.00 4.34
4451 6249 8.319143 TCTTCTTTTACCCGAAGATTTTAGTG 57.681 34.615 0.00 0.00 40.33 2.74
4465 6263 7.809880 AGATTTTAGTGGTTACTACTCCCTT 57.190 36.000 4.27 0.00 39.06 3.95
4530 6363 5.661458 ACCTCTGTACCAAAATATGAGACG 58.339 41.667 0.00 0.00 0.00 4.18
4688 6624 9.855021 GTTGTATTTCCTGTAAAATAGCAATGT 57.145 29.630 0.00 0.00 33.05 2.71
4705 6641 7.834068 AGCAATGTGTACTATGACTGTAAAG 57.166 36.000 0.00 0.00 0.00 1.85
4747 6685 3.671008 TGTAACGGTTCTAGTGCATGT 57.329 42.857 0.00 0.00 0.00 3.21
4748 6686 3.581755 TGTAACGGTTCTAGTGCATGTC 58.418 45.455 0.00 0.00 0.00 3.06
4754 6692 3.128764 CGGTTCTAGTGCATGTCTGACTA 59.871 47.826 9.51 0.00 0.00 2.59
4779 6717 8.689251 AAATCTGTATCGTCATAATATGGTCG 57.311 34.615 0.00 6.45 0.00 4.79
4802 6740 4.262045 GCACAGAAATAAATAAACGGTGCG 59.738 41.667 0.00 0.00 40.91 5.34
4831 6773 6.409524 TCCTCTTCTCCGTTTAGTTTGTTA 57.590 37.500 0.00 0.00 0.00 2.41
4836 6778 8.169977 TCTTCTCCGTTTAGTTTGTTAGTCTA 57.830 34.615 0.00 0.00 0.00 2.59
4838 6780 9.420551 CTTCTCCGTTTAGTTTGTTAGTCTATT 57.579 33.333 0.00 0.00 0.00 1.73
4843 6786 7.601508 CCGTTTAGTTTGTTAGTCTATTGAGGT 59.398 37.037 0.00 0.00 0.00 3.85
4888 6831 2.675844 CTCTCTCTTGACGACGAGATGT 59.324 50.000 0.00 0.00 35.87 3.06
4939 6885 4.421948 ACATCTTCGTTTACCTGATCGAC 58.578 43.478 0.00 0.00 32.14 4.20
4983 6933 2.513065 GAAGTTGACATGCACCGGCG 62.513 60.000 0.00 0.00 45.35 6.46
5022 6975 5.262588 ACAAGCAGTTTGAACCTAAAAGG 57.737 39.130 3.67 0.00 39.20 3.11
5111 7064 3.320673 AGATTCGTCCAGAAACTGACC 57.679 47.619 0.00 0.00 42.91 4.02
5115 7068 0.249868 CGTCCAGAAACTGACCTGCA 60.250 55.000 0.00 0.00 32.44 4.41
5288 7241 5.240844 GGTCAGGTTAAAAGTGTATGTTGCT 59.759 40.000 0.00 0.00 0.00 3.91
5326 7279 1.069049 ACAAACAAGCCAATGTCAGCC 59.931 47.619 0.00 0.00 31.81 4.85
5370 7323 7.066404 TGCTCACAGTTTTATGTTGACAAGTAA 59.934 33.333 0.00 0.00 0.00 2.24
5371 7324 7.587757 GCTCACAGTTTTATGTTGACAAGTAAG 59.412 37.037 0.00 0.00 0.00 2.34
5407 7652 3.538591 CATCACTAAGATGCAGAAGCCA 58.461 45.455 0.00 0.00 46.90 4.75
5428 7673 4.202315 CCAGGGGTTTAACCTTCTTTTTGG 60.202 45.833 14.27 7.62 38.64 3.28
5462 7708 6.384224 ACTACATGAACATGAACATTTGCTG 58.616 36.000 19.56 0.00 41.20 4.41
5522 7768 1.889105 CACACGCACAGGTCAGCTT 60.889 57.895 0.00 0.00 0.00 3.74
5523 7769 1.595382 ACACGCACAGGTCAGCTTC 60.595 57.895 0.00 0.00 0.00 3.86
5524 7770 1.595109 CACGCACAGGTCAGCTTCA 60.595 57.895 0.00 0.00 0.00 3.02
5525 7771 1.301244 ACGCACAGGTCAGCTTCAG 60.301 57.895 0.00 0.00 0.00 3.02
5526 7772 1.301244 CGCACAGGTCAGCTTCAGT 60.301 57.895 0.00 0.00 0.00 3.41
5528 7774 1.433534 GCACAGGTCAGCTTCAGTAC 58.566 55.000 0.00 0.00 0.00 2.73
5598 7844 2.878406 AGTTGACATTTGAGGGTGTTCG 59.122 45.455 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.565416 CGTCAGGTGAAGAATACTATGTGTATA 58.435 37.037 0.00 0.00 40.69 1.47
57 58 2.345641 CGTAAGATTGCGTCAGGTGAAG 59.654 50.000 0.00 0.00 43.02 3.02
60 61 1.990799 TCGTAAGATTGCGTCAGGTG 58.009 50.000 3.08 0.00 45.01 4.00
73 74 9.577003 GTAATTTATTTATGAAGCGGTCGTAAG 57.423 33.333 0.00 0.00 38.63 2.34
76 77 6.256321 ACGTAATTTATTTATGAAGCGGTCGT 59.744 34.615 0.00 0.00 32.17 4.34
78 79 8.730427 CAAACGTAATTTATTTATGAAGCGGTC 58.270 33.333 0.00 0.00 32.17 4.79
80 81 8.829514 TCAAACGTAATTTATTTATGAAGCGG 57.170 30.769 0.00 0.00 32.17 5.52
170 171 9.909644 AATGCGATATTTCTAGTCTTATAACGT 57.090 29.630 0.00 0.00 0.00 3.99
203 204 8.550376 ACGAACGTAAAACATAGTGTAAAACAT 58.450 29.630 0.00 0.00 0.00 2.71
204 205 7.904094 ACGAACGTAAAACATAGTGTAAAACA 58.096 30.769 0.00 0.00 0.00 2.83
205 206 9.842444 TTACGAACGTAAAACATAGTGTAAAAC 57.158 29.630 15.68 0.00 37.61 2.43
292 293 9.279904 TCCGCAAATTTTGTCTTATTTTATACG 57.720 29.630 10.65 1.54 0.00 3.06
295 296 8.931775 GGTTCCGCAAATTTTGTCTTATTTTAT 58.068 29.630 10.65 0.00 0.00 1.40
297 298 6.989759 AGGTTCCGCAAATTTTGTCTTATTTT 59.010 30.769 10.65 0.00 0.00 1.82
298 299 6.521162 AGGTTCCGCAAATTTTGTCTTATTT 58.479 32.000 10.65 0.00 0.00 1.40
300 301 5.722021 AGGTTCCGCAAATTTTGTCTTAT 57.278 34.783 10.65 0.00 0.00 1.73
301 302 6.636562 TTAGGTTCCGCAAATTTTGTCTTA 57.363 33.333 10.65 0.00 0.00 2.10
308 309 5.865013 CCGTATTTTTAGGTTCCGCAAATTT 59.135 36.000 0.00 0.00 0.00 1.82
310 311 4.460034 ACCGTATTTTTAGGTTCCGCAAAT 59.540 37.500 0.00 0.00 33.96 2.32
311 312 3.819902 ACCGTATTTTTAGGTTCCGCAAA 59.180 39.130 0.00 0.00 33.96 3.68
314 315 2.476686 GCACCGTATTTTTAGGTTCCGC 60.477 50.000 0.00 0.00 35.85 5.54
315 316 2.743126 TGCACCGTATTTTTAGGTTCCG 59.257 45.455 0.00 0.00 35.85 4.30
321 322 4.965062 ACGTCAATGCACCGTATTTTTAG 58.035 39.130 0.00 0.00 32.22 1.85
322 323 4.451435 TGACGTCAATGCACCGTATTTTTA 59.549 37.500 17.62 0.00 34.51 1.52
324 325 2.809119 TGACGTCAATGCACCGTATTTT 59.191 40.909 17.62 0.00 34.51 1.82
325 326 2.418692 TGACGTCAATGCACCGTATTT 58.581 42.857 17.62 0.00 34.51 1.40
326 327 2.087501 TGACGTCAATGCACCGTATT 57.912 45.000 17.62 0.00 34.51 1.89
328 329 1.867166 TTTGACGTCAATGCACCGTA 58.133 45.000 30.10 11.18 35.55 4.02
329 330 1.018148 TTTTGACGTCAATGCACCGT 58.982 45.000 30.10 0.00 35.55 4.83
330 331 2.330231 ATTTTGACGTCAATGCACCG 57.670 45.000 30.10 0.00 35.55 4.94
331 332 4.678509 TCTATTTTGACGTCAATGCACC 57.321 40.909 30.10 0.00 35.55 5.01
332 333 5.569059 CCTTTCTATTTTGACGTCAATGCAC 59.431 40.000 30.10 0.00 35.55 4.57
333 334 5.335583 CCCTTTCTATTTTGACGTCAATGCA 60.336 40.000 30.10 17.89 35.55 3.96
334 335 5.095490 CCCTTTCTATTTTGACGTCAATGC 58.905 41.667 30.10 0.00 35.55 3.56
335 336 5.183140 ACCCCTTTCTATTTTGACGTCAATG 59.817 40.000 30.10 19.55 35.55 2.82
336 337 5.183140 CACCCCTTTCTATTTTGACGTCAAT 59.817 40.000 30.10 19.28 35.55 2.57
337 338 4.517453 CACCCCTTTCTATTTTGACGTCAA 59.483 41.667 26.53 26.53 0.00 3.18
338 339 4.069304 CACCCCTTTCTATTTTGACGTCA 58.931 43.478 15.76 15.76 0.00 4.35
339 340 4.320870 TCACCCCTTTCTATTTTGACGTC 58.679 43.478 9.11 9.11 0.00 4.34
340 341 4.360951 TCACCCCTTTCTATTTTGACGT 57.639 40.909 0.00 0.00 0.00 4.34
341 342 5.001232 TCTTCACCCCTTTCTATTTTGACG 58.999 41.667 0.00 0.00 0.00 4.35
342 343 6.894339 TTCTTCACCCCTTTCTATTTTGAC 57.106 37.500 0.00 0.00 0.00 3.18
343 344 9.020731 GTTATTCTTCACCCCTTTCTATTTTGA 57.979 33.333 0.00 0.00 0.00 2.69
344 345 9.025041 AGTTATTCTTCACCCCTTTCTATTTTG 57.975 33.333 0.00 0.00 0.00 2.44
349 350 8.491958 GGAATAGTTATTCTTCACCCCTTTCTA 58.508 37.037 10.71 0.00 41.33 2.10
350 351 7.184753 AGGAATAGTTATTCTTCACCCCTTTCT 59.815 37.037 10.71 0.00 41.33 2.52
351 352 7.347252 AGGAATAGTTATTCTTCACCCCTTTC 58.653 38.462 10.71 0.00 41.33 2.62
352 353 7.036863 TGAGGAATAGTTATTCTTCACCCCTTT 60.037 37.037 17.60 0.00 46.85 3.11
353 354 6.447084 TGAGGAATAGTTATTCTTCACCCCTT 59.553 38.462 17.60 0.00 46.85 3.95
354 355 5.970640 TGAGGAATAGTTATTCTTCACCCCT 59.029 40.000 17.60 4.78 46.85 4.79
355 356 6.248569 TGAGGAATAGTTATTCTTCACCCC 57.751 41.667 17.60 0.81 46.85 4.95
360 361 6.292150 CCTGGGTGAGGAATAGTTATTCTTC 58.708 44.000 13.90 13.90 46.33 2.87
361 362 5.132816 CCCTGGGTGAGGAATAGTTATTCTT 59.867 44.000 3.97 4.41 46.33 2.52
362 363 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
363 364 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
364 365 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
365 366 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
366 367 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
367 368 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
378 379 1.905512 GCTATTCGTCACCCTGGGT 59.094 57.895 14.05 14.05 35.62 4.51
379 380 1.227263 CGCTATTCGTCACCCTGGG 60.227 63.158 12.28 12.28 0.00 4.45
380 381 1.883084 GCGCTATTCGTCACCCTGG 60.883 63.158 0.00 0.00 41.07 4.45
381 382 2.230940 CGCGCTATTCGTCACCCTG 61.231 63.158 5.56 0.00 41.07 4.45
382 383 2.104331 CGCGCTATTCGTCACCCT 59.896 61.111 5.56 0.00 41.07 4.34
383 384 2.103538 TCGCGCTATTCGTCACCC 59.896 61.111 5.56 0.00 41.07 4.61
384 385 2.228914 GGTCGCGCTATTCGTCACC 61.229 63.158 5.56 0.00 41.07 4.02
385 386 2.228914 GGGTCGCGCTATTCGTCAC 61.229 63.158 5.56 0.00 41.07 3.67
386 387 1.096967 TAGGGTCGCGCTATTCGTCA 61.097 55.000 5.56 0.00 41.07 4.35
387 388 0.240411 ATAGGGTCGCGCTATTCGTC 59.760 55.000 5.56 0.00 36.44 4.20
388 389 1.527034 TATAGGGTCGCGCTATTCGT 58.473 50.000 17.00 0.00 39.65 3.85
389 390 2.846039 ATATAGGGTCGCGCTATTCG 57.154 50.000 17.00 0.00 39.65 3.34
390 391 6.505272 AGAAATATATAGGGTCGCGCTATTC 58.495 40.000 17.00 11.24 39.65 1.75
391 392 6.096423 TGAGAAATATATAGGGTCGCGCTATT 59.904 38.462 17.00 0.00 39.65 1.73
392 393 5.593095 TGAGAAATATATAGGGTCGCGCTAT 59.407 40.000 5.56 16.35 41.39 2.97
393 394 4.945543 TGAGAAATATATAGGGTCGCGCTA 59.054 41.667 5.56 0.00 33.62 4.26
394 395 3.762288 TGAGAAATATATAGGGTCGCGCT 59.238 43.478 5.56 0.00 0.00 5.92
395 396 4.106029 TGAGAAATATATAGGGTCGCGC 57.894 45.455 0.00 0.00 0.00 6.86
396 397 5.651530 ACATGAGAAATATATAGGGTCGCG 58.348 41.667 0.00 0.00 0.00 5.87
397 398 7.544622 TGTACATGAGAAATATATAGGGTCGC 58.455 38.462 0.00 0.00 0.00 5.19
398 399 9.521503 CATGTACATGAGAAATATATAGGGTCG 57.478 37.037 28.41 0.00 41.20 4.79
414 415 5.937540 AGAAAAATGGTCGTCATGTACATGA 59.062 36.000 30.29 30.29 44.83 3.07
415 416 6.182039 AGAAAAATGGTCGTCATGTACATG 57.818 37.500 26.83 26.83 40.09 3.21
416 417 6.817765 AAGAAAAATGGTCGTCATGTACAT 57.182 33.333 1.41 1.41 35.99 2.29
417 418 6.627395 AAAGAAAAATGGTCGTCATGTACA 57.373 33.333 0.00 0.00 35.99 2.90
494 496 5.021458 ACTTATTTTGGGACGGAGAGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
495 497 3.838903 ACTTATTTTGGGACGGAGAGAGT 59.161 43.478 0.00 0.00 0.00 3.24
496 498 4.184629 CACTTATTTTGGGACGGAGAGAG 58.815 47.826 0.00 0.00 0.00 3.20
497 499 3.581332 ACACTTATTTTGGGACGGAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
498 500 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
499 501 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
500 502 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
501 503 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
502 504 5.106436 GGTAAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
503 505 5.704053 AGGTAAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
504 506 7.520451 AAGGTAAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
505 507 8.442374 ACTAAGGTAAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
506 508 8.631480 ACTAAGGTAAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
515 517 9.623000 ACAAAATTGTACTAAGGTAAAGACACT 57.377 29.630 0.00 0.00 40.16 3.55
556 558 8.557029 CCGTCTCAAAATAAGTGTCTTAACTTT 58.443 33.333 0.00 0.00 40.77 2.66
557 559 7.929785 TCCGTCTCAAAATAAGTGTCTTAACTT 59.070 33.333 0.00 0.00 42.89 2.66
558 560 7.439381 TCCGTCTCAAAATAAGTGTCTTAACT 58.561 34.615 0.00 0.00 0.00 2.24
559 561 7.148623 CCTCCGTCTCAAAATAAGTGTCTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
560 562 6.872020 CCTCCGTCTCAAAATAAGTGTCTTAA 59.128 38.462 0.00 0.00 0.00 1.85
561 563 6.395629 CCTCCGTCTCAAAATAAGTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
562 564 5.238583 CCTCCGTCTCAAAATAAGTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
563 565 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
564 566 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
565 567 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
566 568 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
567 569 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
568 570 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
569 571 6.555463 AATACTCCCTCCGTCTCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
570 572 6.555463 AAATACTCCCTCCGTCTCAAAATA 57.445 37.500 0.00 0.00 0.00 1.40
571 573 5.437191 AAATACTCCCTCCGTCTCAAAAT 57.563 39.130 0.00 0.00 0.00 1.82
572 574 4.903045 AAATACTCCCTCCGTCTCAAAA 57.097 40.909 0.00 0.00 0.00 2.44
573 575 4.903045 AAAATACTCCCTCCGTCTCAAA 57.097 40.909 0.00 0.00 0.00 2.69
574 576 4.903045 AAAAATACTCCCTCCGTCTCAA 57.097 40.909 0.00 0.00 0.00 3.02
765 800 2.483876 GCCAATGTCTCGCTTATAGCA 58.516 47.619 0.00 0.00 42.58 3.49
766 801 1.457303 CGCCAATGTCTCGCTTATAGC 59.543 52.381 0.00 0.00 38.02 2.97
767 802 1.457303 GCGCCAATGTCTCGCTTATAG 59.543 52.381 0.00 0.00 44.79 1.31
831 1184 0.243365 CTGGCATAGCAACCGCAAAA 59.757 50.000 0.00 0.00 42.27 2.44
835 1188 3.892581 GCCTGGCATAGCAACCGC 61.893 66.667 15.17 0.00 38.99 5.68
836 1189 3.211963 GGCCTGGCATAGCAACCG 61.212 66.667 22.05 0.00 0.00 4.44
838 1191 0.972471 AAAGGGCCTGGCATAGCAAC 60.972 55.000 22.05 0.11 0.00 4.17
839 1192 0.252193 AAAAGGGCCTGGCATAGCAA 60.252 50.000 22.05 0.00 0.00 3.91
1041 2678 1.696097 CGGATTTGAGGTCGGGGGAT 61.696 60.000 0.00 0.00 0.00 3.85
1101 2738 2.500229 TTCTTGGTGGTTCCACGAATC 58.500 47.619 17.06 4.85 45.42 2.52
1102 2739 2.649531 TTCTTGGTGGTTCCACGAAT 57.350 45.000 17.06 0.00 45.42 3.34
1111 2748 1.594293 CGTGACGCTTCTTGGTGGT 60.594 57.895 0.00 0.00 0.00 4.16
1243 2880 3.491652 GCGGCAGCTCGAAGAACC 61.492 66.667 0.00 0.00 41.01 3.62
1336 2973 0.903454 ACCCTGGAATTCGGACGACT 60.903 55.000 5.02 0.00 0.00 4.18
1386 3023 8.355169 ACGTACTACTTGAATTTAACACAGAGA 58.645 33.333 0.00 0.00 0.00 3.10
1400 3037 9.903682 GAGCCATAATTTATACGTACTACTTGA 57.096 33.333 0.00 0.00 0.00 3.02
1410 3047 7.009265 CACGTATCCTGAGCCATAATTTATACG 59.991 40.741 0.00 0.00 43.03 3.06
1411 3048 7.201530 GCACGTATCCTGAGCCATAATTTATAC 60.202 40.741 0.00 0.00 0.00 1.47
1412 3049 6.816640 GCACGTATCCTGAGCCATAATTTATA 59.183 38.462 0.00 0.00 0.00 0.98
1413 3050 5.643777 GCACGTATCCTGAGCCATAATTTAT 59.356 40.000 0.00 0.00 0.00 1.40
1473 3110 0.937304 TGTTGCTCGAAGTGAACAGC 59.063 50.000 0.00 0.00 0.00 4.40
1480 3117 3.805422 TCGTAAACAATGTTGCTCGAAGT 59.195 39.130 14.33 0.00 0.00 3.01
1484 3121 3.788434 AGTCGTAAACAATGTTGCTCG 57.212 42.857 0.00 5.55 0.00 5.03
1519 3156 3.787785 TGACGTTCAGCTAGTTGTTCAA 58.212 40.909 6.47 0.00 0.00 2.69
1567 3204 5.381174 TGGCTTCAAAAGAATCATGTGAG 57.619 39.130 0.00 0.00 0.00 3.51
1693 3330 0.835941 ACCCCTATTCTGCTCTGCTG 59.164 55.000 0.00 0.00 0.00 4.41
1894 3531 4.096681 TCATTCGGCATATCTACATCCCT 58.903 43.478 0.00 0.00 0.00 4.20
1957 3594 9.442047 ACAAACTTATCAGTTCTTAAGAGATGG 57.558 33.333 13.35 9.55 42.89 3.51
2056 3694 8.918961 AACGTTTCATTTTGTATGTTGAGAAA 57.081 26.923 0.00 0.00 0.00 2.52
2079 3717 6.684555 CGCTCTGCAGTTAAATTAATCAGAAC 59.315 38.462 14.67 9.39 0.00 3.01
2165 3805 4.260661 CGATTTCATCTTGCTGAGACATGG 60.261 45.833 0.00 0.00 37.17 3.66
2166 3806 4.569564 TCGATTTCATCTTGCTGAGACATG 59.430 41.667 0.00 0.00 37.17 3.21
2167 3807 4.763073 TCGATTTCATCTTGCTGAGACAT 58.237 39.130 0.00 0.00 37.17 3.06
2196 3853 6.261826 GTCTGAAGCAATGCTCTTGGTAATAT 59.738 38.462 8.71 0.00 38.25 1.28
2202 3859 2.434428 AGTCTGAAGCAATGCTCTTGG 58.566 47.619 8.71 0.00 38.25 3.61
2203 3860 3.119919 GGAAGTCTGAAGCAATGCTCTTG 60.120 47.826 8.71 1.44 38.25 3.02
2205 3862 2.039480 TGGAAGTCTGAAGCAATGCTCT 59.961 45.455 8.71 0.00 38.25 4.09
2208 3865 2.915738 CTGGAAGTCTGAAGCAATGC 57.084 50.000 0.00 0.00 0.00 3.56
2221 3878 6.372659 AGAACATACAAATGCTACACTGGAAG 59.627 38.462 0.00 0.00 36.50 3.46
2231 3888 9.143631 GCTCAATAAAAAGAACATACAAATGCT 57.856 29.630 0.00 0.00 36.50 3.79
2267 3924 9.918630 ATTCAGAAACAAAATTGACTATTCCTG 57.081 29.630 0.00 0.00 0.00 3.86
2281 3938 8.141268 GGTTGGTAATCAGAATTCAGAAACAAA 58.859 33.333 8.44 5.50 0.00 2.83
2284 3941 7.214467 TGGTTGGTAATCAGAATTCAGAAAC 57.786 36.000 8.44 7.98 0.00 2.78
2292 3949 2.582636 AGCCCTGGTTGGTAATCAGAAT 59.417 45.455 3.50 0.00 0.00 2.40
2293 3950 1.992557 AGCCCTGGTTGGTAATCAGAA 59.007 47.619 3.50 0.00 0.00 3.02
2294 3951 1.281867 CAGCCCTGGTTGGTAATCAGA 59.718 52.381 3.50 0.00 0.00 3.27
2295 3952 1.755179 CAGCCCTGGTTGGTAATCAG 58.245 55.000 0.00 0.00 0.00 2.90
2296 3953 0.323360 GCAGCCCTGGTTGGTAATCA 60.323 55.000 2.09 0.00 0.00 2.57
2297 3954 0.034089 AGCAGCCCTGGTTGGTAATC 60.034 55.000 2.71 0.00 38.24 1.75
2298 3955 0.323725 CAGCAGCCCTGGTTGGTAAT 60.324 55.000 4.37 0.00 39.58 1.89
2537 4194 6.855763 AGCAACCATGAAAATGAATAGGAA 57.144 33.333 0.00 0.00 0.00 3.36
2589 4256 3.301794 TCCATGGCAAAGCACTGATAT 57.698 42.857 6.96 0.00 0.00 1.63
3009 4676 6.461110 AATTGCTATGCTAAATCTTGCAGT 57.539 33.333 0.00 0.00 42.74 4.40
3185 4858 4.825085 TCATCAGTCCGTATGTAGTGCATA 59.175 41.667 0.00 0.00 38.94 3.14
3206 4879 2.209273 CATGGTGTGTTCGTTCACTCA 58.791 47.619 12.11 10.72 38.90 3.41
3207 4880 2.032894 CACATGGTGTGTTCGTTCACTC 60.033 50.000 0.00 9.18 43.08 3.51
3208 4881 1.939934 CACATGGTGTGTTCGTTCACT 59.060 47.619 0.00 0.00 43.08 3.41
3270 4945 3.414269 GAATACCCCTTCCGTTCACAAA 58.586 45.455 0.00 0.00 0.00 2.83
3279 4954 6.295688 GGAAAAAGAAAAGGAATACCCCTTCC 60.296 42.308 0.00 0.00 45.30 3.46
3508 5183 4.183865 TGTACATGAGTGATTAGCTGCAC 58.816 43.478 0.00 1.95 35.30 4.57
3751 5432 4.944962 TGCAACATATGTCTAGTGCAAC 57.055 40.909 23.93 3.41 0.00 4.17
3753 5434 3.313249 GCATGCAACATATGTCTAGTGCA 59.687 43.478 26.70 26.70 35.47 4.57
3754 5435 3.562973 AGCATGCAACATATGTCTAGTGC 59.437 43.478 21.98 19.01 0.00 4.40
3755 5436 5.746307 AAGCATGCAACATATGTCTAGTG 57.254 39.130 21.98 4.84 0.00 2.74
3756 5437 6.764308 AAAAGCATGCAACATATGTCTAGT 57.236 33.333 21.98 0.00 0.00 2.57
3757 5438 8.066595 GTCTAAAAGCATGCAACATATGTCTAG 58.933 37.037 21.98 3.79 0.00 2.43
3760 5441 6.554419 TGTCTAAAAGCATGCAACATATGTC 58.446 36.000 21.98 0.00 0.00 3.06
3764 5445 8.685427 ACATATTGTCTAAAAGCATGCAACATA 58.315 29.630 21.98 6.41 0.00 2.29
3765 5446 7.549839 ACATATTGTCTAAAAGCATGCAACAT 58.450 30.769 21.98 5.49 0.00 2.71
3766 5447 6.923012 ACATATTGTCTAAAAGCATGCAACA 58.077 32.000 21.98 10.72 0.00 3.33
3767 5448 7.669098 CAACATATTGTCTAAAAGCATGCAAC 58.331 34.615 21.98 8.26 0.00 4.17
3979 5768 4.880120 AGTGCACAAGACATCATAATCCAG 59.120 41.667 21.04 0.00 0.00 3.86
3983 5772 5.356190 CCAGAAGTGCACAAGACATCATAAT 59.644 40.000 21.04 0.00 0.00 1.28
4010 5799 6.805271 CACAAGGTTTCTGCAGAGATAAATTG 59.195 38.462 17.43 18.27 0.00 2.32
4066 5856 8.012241 GTGTAGATCTGCAAGTTACAGAAAAAG 58.988 37.037 15.57 0.00 46.63 2.27
4195 5985 8.253810 CACCTGACTTCTTCAAGAGATATGTTA 58.746 37.037 0.00 0.00 33.49 2.41
4223 6013 3.056536 GGTTTTCCCATGAAAGAAGAGCC 60.057 47.826 0.00 0.00 41.31 4.70
4327 6125 0.520404 GCCGCCTGATGCATATGAAG 59.480 55.000 6.97 0.00 41.33 3.02
4451 6249 3.350833 TGAGACGAAGGGAGTAGTAACC 58.649 50.000 0.00 0.00 0.00 2.85
4521 6354 6.295719 ACTCCCTACAAAAACGTCTCATAT 57.704 37.500 0.00 0.00 0.00 1.78
4525 6358 7.263496 ACATATACTCCCTACAAAAACGTCTC 58.737 38.462 0.00 0.00 0.00 3.36
4681 6617 6.818644 CCTTTACAGTCATAGTACACATTGCT 59.181 38.462 0.00 0.00 0.00 3.91
4688 6624 8.413309 ACAACTACCTTTACAGTCATAGTACA 57.587 34.615 0.00 0.00 0.00 2.90
4705 6641 7.958053 ACAACTGTACTGAAATACAACTACC 57.042 36.000 6.77 0.00 34.68 3.18
4754 6692 7.275779 GCGACCATATTATGACGATACAGATTT 59.724 37.037 19.36 0.00 34.03 2.17
4779 6717 4.262045 CGCACCGTTTATTTATTTCTGTGC 59.738 41.667 0.00 0.00 42.19 4.57
4802 6740 4.888823 ACTAAACGGAGAAGAGGAGGATAC 59.111 45.833 0.00 0.00 0.00 2.24
4831 6773 5.546499 TGGAAACCACTTACCTCAATAGACT 59.454 40.000 0.00 0.00 0.00 3.24
4836 6778 4.998051 ACATGGAAACCACTTACCTCAAT 58.002 39.130 0.00 0.00 35.80 2.57
4838 6780 3.244770 GGACATGGAAACCACTTACCTCA 60.245 47.826 0.00 0.00 35.80 3.86
4843 6786 3.332187 TGGATGGACATGGAAACCACTTA 59.668 43.478 0.00 0.00 35.80 2.24
4888 6831 9.856488 GTATGAACAAAGAGATACTACTTGTGA 57.144 33.333 0.00 0.00 32.17 3.58
4939 6885 1.223187 GGGTATATTGGCCGTGTTCG 58.777 55.000 0.00 0.00 0.00 3.95
4983 6933 9.132385 AACTGCTTGTTGAGTCTAGACTAGACC 62.132 44.444 30.56 23.49 45.27 3.85
5111 7064 1.489574 GCTCTGATCGAGTCATGCAG 58.510 55.000 13.56 0.00 41.98 4.41
5132 7085 1.548269 CTTCGGCTCTGACCTTTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
5138 7091 2.995872 GCGACTTCGGCTCTGACCT 61.996 63.158 0.02 0.00 40.23 3.85
5273 7226 6.942576 AGACTTGGATAGCAACATACACTTTT 59.057 34.615 0.00 0.00 0.00 2.27
5288 7241 0.539986 GTTGGGCCGAGACTTGGATA 59.460 55.000 13.45 0.00 0.00 2.59
5326 7279 1.076533 CACGGAATTCCTCGACACCG 61.077 60.000 22.05 9.48 44.77 4.94
5370 7323 5.215252 AGTGATGCTGTTGTTGTAGTACT 57.785 39.130 0.00 0.00 0.00 2.73
5371 7324 6.866770 TCTTAGTGATGCTGTTGTTGTAGTAC 59.133 38.462 0.00 0.00 0.00 2.73
5403 7648 1.456919 AGAAGGTTAAACCCCTGGCT 58.543 50.000 0.00 0.00 39.75 4.75
5407 7652 4.886163 TCCAAAAAGAAGGTTAAACCCCT 58.114 39.130 0.00 0.00 39.75 4.79
5522 7768 3.008330 GGTACAGCTCTTCTCGTACTGA 58.992 50.000 9.00 0.00 35.61 3.41
5523 7769 2.747989 TGGTACAGCTCTTCTCGTACTG 59.252 50.000 9.00 0.00 35.61 2.74
5524 7770 2.748532 GTGGTACAGCTCTTCTCGTACT 59.251 50.000 9.00 0.00 41.80 2.73
5525 7771 2.748532 AGTGGTACAGCTCTTCTCGTAC 59.251 50.000 0.00 2.05 41.80 3.67
5526 7772 3.069079 AGTGGTACAGCTCTTCTCGTA 57.931 47.619 0.00 0.00 41.80 3.43
5528 7774 3.057174 AGAAAGTGGTACAGCTCTTCTCG 60.057 47.826 0.00 0.00 41.80 4.04
5598 7844 4.251268 ACGTAAGAAAATCACTAGCACCC 58.749 43.478 0.00 0.00 43.62 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.