Multiple sequence alignment - TraesCS1A01G187900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G187900 chr1A 100.000 2929 0 0 1 2929 339100014 339097086 0.000000e+00 5409.0
1 TraesCS1A01G187900 chr1A 88.732 71 8 0 2028 2098 391251787 391251857 1.450000e-13 87.9
2 TraesCS1A01G187900 chr1D 91.653 1809 65 27 269 2019 261205964 261207744 0.000000e+00 2425.0
3 TraesCS1A01G187900 chr1B 90.133 1581 87 22 458 2016 350877220 350875687 0.000000e+00 1991.0
4 TraesCS1A01G187900 chr1B 89.033 538 57 2 2393 2929 266087186 266086650 0.000000e+00 665.0
5 TraesCS1A01G187900 chr1B 96.512 172 6 0 301 472 350877405 350877234 4.780000e-73 285.0
6 TraesCS1A01G187900 chr1B 89.041 73 7 1 2028 2099 170568860 170568788 4.020000e-14 89.8
7 TraesCS1A01G187900 chr1B 97.297 37 1 0 267 303 350877453 350877417 2.440000e-06 63.9
8 TraesCS1A01G187900 chr6A 91.858 565 37 6 2372 2929 597455127 597454565 0.000000e+00 780.0
9 TraesCS1A01G187900 chr6A 82.353 493 55 11 2392 2857 599980823 599981310 1.640000e-107 399.0
10 TraesCS1A01G187900 chr6A 91.429 70 3 2 2021 2089 460643358 460643425 3.110000e-15 93.5
11 TraesCS1A01G187900 chr6A 83.951 81 12 1 22 102 23935042 23935121 3.130000e-10 76.8
12 TraesCS1A01G187900 chr4D 92.804 542 34 2 2392 2929 146093496 146092956 0.000000e+00 780.0
13 TraesCS1A01G187900 chr4D 80.864 162 18 6 22 181 483861537 483861687 6.630000e-22 115.0
14 TraesCS1A01G187900 chr4D 82.727 110 18 1 18 126 484084184 484084075 2.400000e-16 97.1
15 TraesCS1A01G187900 chr5A 92.910 536 33 4 2395 2929 158353203 158353734 0.000000e+00 774.0
16 TraesCS1A01G187900 chr5A 88.787 544 44 8 2393 2929 511881926 511882459 0.000000e+00 651.0
17 TraesCS1A01G187900 chr5A 95.122 41 2 0 1245 1285 522956711 522956671 6.780000e-07 65.8
18 TraesCS1A01G187900 chr5A 95.122 41 2 0 1245 1285 523450182 523450222 6.780000e-07 65.8
19 TraesCS1A01G187900 chr5A 90.000 50 4 1 1245 1293 522124493 522124444 2.440000e-06 63.9
20 TraesCS1A01G187900 chr5A 90.000 50 4 1 1245 1293 522868697 522868648 2.440000e-06 63.9
21 TraesCS1A01G187900 chr7A 92.233 515 32 3 2393 2901 175350051 175349539 0.000000e+00 723.0
22 TraesCS1A01G187900 chr7A 81.579 114 21 0 1 114 83024037 83024150 8.640000e-16 95.3
23 TraesCS1A01G187900 chr7A 86.420 81 7 3 2029 2105 239033157 239033237 5.200000e-13 86.1
24 TraesCS1A01G187900 chr3A 88.725 541 57 3 2392 2929 173327137 173327676 0.000000e+00 658.0
25 TraesCS1A01G187900 chr3A 85.870 92 13 0 11 102 512555747 512555838 6.680000e-17 99.0
26 TraesCS1A01G187900 chr2A 89.484 523 49 2 2393 2909 203557473 203557995 0.000000e+00 656.0
27 TraesCS1A01G187900 chr2A 93.842 406 24 1 2524 2929 191917203 191916799 6.940000e-171 610.0
28 TraesCS1A01G187900 chr2A 95.312 64 2 1 2028 2090 754039015 754039078 1.860000e-17 100.0
29 TraesCS1A01G187900 chr2A 80.153 131 14 10 2303 2424 178150254 178150381 1.450000e-13 87.9
30 TraesCS1A01G187900 chr7D 83.234 167 27 1 11 177 192138859 192138694 5.060000e-33 152.0
31 TraesCS1A01G187900 chr7D 91.304 69 4 1 2024 2090 615904345 615904277 3.110000e-15 93.5
32 TraesCS1A01G187900 chr7D 81.250 128 9 12 2309 2431 584452763 584452880 4.020000e-14 89.8
33 TraesCS1A01G187900 chr7D 80.315 127 13 12 2309 2429 264965358 264965238 5.200000e-13 86.1
34 TraesCS1A01G187900 chr7D 74.384 203 42 9 1245 1439 27453253 27453453 8.700000e-11 78.7
35 TraesCS1A01G187900 chr3B 92.958 71 5 0 29 99 512741740 512741810 1.440000e-18 104.0
36 TraesCS1A01G187900 chr3B 100.000 29 0 0 136 164 721836850 721836822 1.000000e-03 54.7
37 TraesCS1A01G187900 chr6B 83.065 124 10 11 2303 2424 250788998 250789112 5.160000e-18 102.0
38 TraesCS1A01G187900 chr6B 81.356 118 11 11 2320 2430 90023786 90023899 5.200000e-13 86.1
39 TraesCS1A01G187900 chr2D 95.312 64 3 0 2027 2090 327614898 327614835 5.160000e-18 102.0
40 TraesCS1A01G187900 chr6D 93.651 63 2 1 2028 2088 469492411 469492349 3.110000e-15 93.5
41 TraesCS1A01G187900 chr6D 93.651 63 2 1 2028 2088 469511219 469511157 3.110000e-15 93.5
42 TraesCS1A01G187900 chr3D 84.000 100 10 6 2334 2431 135170836 135170931 1.120000e-14 91.6
43 TraesCS1A01G187900 chr5D 81.818 121 6 16 2321 2433 178523070 178523182 1.450000e-13 87.9
44 TraesCS1A01G187900 chr5D 75.641 156 25 13 1245 1389 411149263 411149110 6.780000e-07 65.8
45 TraesCS1A01G187900 chr5D 95.122 41 2 0 1245 1285 411627725 411627765 6.780000e-07 65.8
46 TraesCS1A01G187900 chr5D 100.000 34 0 0 1245 1278 411196843 411196876 2.440000e-06 63.9
47 TraesCS1A01G187900 chr5D 75.155 161 24 8 1245 1391 410874092 410873934 8.760000e-06 62.1
48 TraesCS1A01G187900 chr5D 88.000 50 5 1 1245 1293 410607015 410606966 1.130000e-04 58.4
49 TraesCS1A01G187900 chr4A 77.564 156 23 11 1245 1391 703941902 703941750 1.870000e-12 84.2
50 TraesCS1A01G187900 chr5B 95.122 41 2 0 1245 1285 493931500 493931540 6.780000e-07 65.8
51 TraesCS1A01G187900 chr5B 90.000 50 4 1 1245 1293 492820062 492820013 2.440000e-06 63.9
52 TraesCS1A01G187900 chr5B 100.000 34 0 0 1245 1278 493674152 493674185 2.440000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G187900 chr1A 339097086 339100014 2928 True 5409.000000 5409 100.000000 1 2929 1 chr1A.!!$R1 2928
1 TraesCS1A01G187900 chr1D 261205964 261207744 1780 False 2425.000000 2425 91.653000 269 2019 1 chr1D.!!$F1 1750
2 TraesCS1A01G187900 chr1B 350875687 350877453 1766 True 779.966667 1991 94.647333 267 2016 3 chr1B.!!$R3 1749
3 TraesCS1A01G187900 chr1B 266086650 266087186 536 True 665.000000 665 89.033000 2393 2929 1 chr1B.!!$R2 536
4 TraesCS1A01G187900 chr6A 597454565 597455127 562 True 780.000000 780 91.858000 2372 2929 1 chr6A.!!$R1 557
5 TraesCS1A01G187900 chr4D 146092956 146093496 540 True 780.000000 780 92.804000 2392 2929 1 chr4D.!!$R1 537
6 TraesCS1A01G187900 chr5A 158353203 158353734 531 False 774.000000 774 92.910000 2395 2929 1 chr5A.!!$F1 534
7 TraesCS1A01G187900 chr5A 511881926 511882459 533 False 651.000000 651 88.787000 2393 2929 1 chr5A.!!$F2 536
8 TraesCS1A01G187900 chr7A 175349539 175350051 512 True 723.000000 723 92.233000 2393 2901 1 chr7A.!!$R1 508
9 TraesCS1A01G187900 chr3A 173327137 173327676 539 False 658.000000 658 88.725000 2392 2929 1 chr3A.!!$F1 537
10 TraesCS1A01G187900 chr2A 203557473 203557995 522 False 656.000000 656 89.484000 2393 2909 1 chr2A.!!$F2 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 976 0.040781 GCAAAGCTGAAAACCGCGTA 60.041 50.0 4.92 0.0 0.0 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2086 0.034756 TGTTGTGTCTCCACCATCGG 59.965 55.0 0.0 0.0 41.09 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.778993 CACAGACTAAAACATCTAAATTGATGG 57.221 33.333 9.78 0.00 45.78 3.51
27 28 9.739276 ACAGACTAAAACATCTAAATTGATGGA 57.261 29.630 9.78 0.00 45.78 3.41
28 29 9.994432 CAGACTAAAACATCTAAATTGATGGAC 57.006 33.333 9.78 0.00 45.78 4.02
29 30 9.739276 AGACTAAAACATCTAAATTGATGGACA 57.261 29.630 9.78 0.00 45.78 4.02
36 37 8.985315 ACATCTAAATTGATGGACATACATGT 57.015 30.769 2.69 2.69 45.78 3.21
37 38 8.843262 ACATCTAAATTGATGGACATACATGTG 58.157 33.333 9.11 0.00 45.78 3.21
38 39 8.843262 CATCTAAATTGATGGACATACATGTGT 58.157 33.333 9.11 0.00 38.78 3.72
39 40 8.806429 TCTAAATTGATGGACATACATGTGTT 57.194 30.769 9.11 0.00 41.95 3.32
40 41 9.241919 TCTAAATTGATGGACATACATGTGTTT 57.758 29.630 9.11 0.00 41.95 2.83
41 42 9.292846 CTAAATTGATGGACATACATGTGTTTG 57.707 33.333 9.11 6.18 41.95 2.93
42 43 4.700268 TGATGGACATACATGTGTTTGC 57.300 40.909 9.11 0.24 41.95 3.68
43 44 4.077822 TGATGGACATACATGTGTTTGCA 58.922 39.130 9.11 7.04 41.95 4.08
44 45 4.705991 TGATGGACATACATGTGTTTGCAT 59.294 37.500 14.04 14.04 41.95 3.96
55 56 5.643664 CATGTGTTTGCATGTATTAGCTGT 58.356 37.500 0.00 0.00 40.81 4.40
56 57 5.703978 TGTGTTTGCATGTATTAGCTGTT 57.296 34.783 0.00 0.00 0.00 3.16
57 58 6.083098 TGTGTTTGCATGTATTAGCTGTTT 57.917 33.333 0.00 0.00 0.00 2.83
58 59 6.511416 TGTGTTTGCATGTATTAGCTGTTTT 58.489 32.000 0.00 0.00 0.00 2.43
59 60 6.420306 TGTGTTTGCATGTATTAGCTGTTTTG 59.580 34.615 0.00 0.00 0.00 2.44
60 61 6.640499 GTGTTTGCATGTATTAGCTGTTTTGA 59.360 34.615 0.00 0.00 0.00 2.69
61 62 7.168972 GTGTTTGCATGTATTAGCTGTTTTGAA 59.831 33.333 0.00 0.00 0.00 2.69
62 63 7.708322 TGTTTGCATGTATTAGCTGTTTTGAAA 59.292 29.630 0.00 0.00 0.00 2.69
63 64 8.547069 GTTTGCATGTATTAGCTGTTTTGAAAA 58.453 29.630 0.00 0.00 0.00 2.29
64 65 8.830201 TTGCATGTATTAGCTGTTTTGAAAAT 57.170 26.923 0.00 0.00 0.00 1.82
65 66 9.920133 TTGCATGTATTAGCTGTTTTGAAAATA 57.080 25.926 0.00 0.00 0.00 1.40
75 76 8.776376 AGCTGTTTTGAAAATATGGTTTATGG 57.224 30.769 0.00 0.00 0.00 2.74
76 77 7.334171 AGCTGTTTTGAAAATATGGTTTATGGC 59.666 33.333 0.00 0.00 0.00 4.40
77 78 7.334171 GCTGTTTTGAAAATATGGTTTATGGCT 59.666 33.333 0.00 0.00 0.00 4.75
78 79 8.545229 TGTTTTGAAAATATGGTTTATGGCTG 57.455 30.769 0.00 0.00 0.00 4.85
79 80 7.118971 TGTTTTGAAAATATGGTTTATGGCTGC 59.881 33.333 0.00 0.00 0.00 5.25
80 81 5.929058 TGAAAATATGGTTTATGGCTGCA 57.071 34.783 0.50 0.00 0.00 4.41
81 82 6.291648 TGAAAATATGGTTTATGGCTGCAA 57.708 33.333 0.50 0.00 0.00 4.08
82 83 6.705302 TGAAAATATGGTTTATGGCTGCAAA 58.295 32.000 0.50 0.00 0.00 3.68
83 84 7.337167 TGAAAATATGGTTTATGGCTGCAAAT 58.663 30.769 0.50 0.00 0.00 2.32
84 85 7.280428 TGAAAATATGGTTTATGGCTGCAAATG 59.720 33.333 0.50 0.00 0.00 2.32
85 86 3.547054 ATGGTTTATGGCTGCAAATGG 57.453 42.857 0.50 0.00 0.00 3.16
86 87 2.255406 TGGTTTATGGCTGCAAATGGT 58.745 42.857 0.50 0.00 0.00 3.55
87 88 3.435275 TGGTTTATGGCTGCAAATGGTA 58.565 40.909 0.50 0.00 0.00 3.25
88 89 3.834813 TGGTTTATGGCTGCAAATGGTAA 59.165 39.130 0.50 0.00 0.00 2.85
89 90 4.284490 TGGTTTATGGCTGCAAATGGTAAA 59.716 37.500 0.50 0.00 0.00 2.01
90 91 5.221722 TGGTTTATGGCTGCAAATGGTAAAA 60.222 36.000 0.50 0.00 0.00 1.52
91 92 5.879777 GGTTTATGGCTGCAAATGGTAAAAT 59.120 36.000 0.50 0.00 0.00 1.82
92 93 7.044798 GGTTTATGGCTGCAAATGGTAAAATA 58.955 34.615 0.50 0.00 0.00 1.40
93 94 7.714813 GGTTTATGGCTGCAAATGGTAAAATAT 59.285 33.333 0.50 0.00 0.00 1.28
94 95 9.757227 GTTTATGGCTGCAAATGGTAAAATATA 57.243 29.630 0.50 0.00 0.00 0.86
97 98 8.891671 ATGGCTGCAAATGGTAAAATATAAAG 57.108 30.769 0.50 0.00 0.00 1.85
98 99 6.760770 TGGCTGCAAATGGTAAAATATAAAGC 59.239 34.615 0.50 0.00 0.00 3.51
99 100 6.202762 GGCTGCAAATGGTAAAATATAAAGCC 59.797 38.462 0.50 0.00 37.40 4.35
100 101 6.202762 GCTGCAAATGGTAAAATATAAAGCCC 59.797 38.462 0.00 0.00 0.00 5.19
101 102 6.276847 TGCAAATGGTAAAATATAAAGCCCG 58.723 36.000 0.00 0.00 0.00 6.13
102 103 5.176774 GCAAATGGTAAAATATAAAGCCCGC 59.823 40.000 0.00 0.00 0.00 6.13
103 104 6.512297 CAAATGGTAAAATATAAAGCCCGCT 58.488 36.000 0.00 0.00 0.00 5.52
104 105 6.724893 AATGGTAAAATATAAAGCCCGCTT 57.275 33.333 0.00 0.00 37.98 4.68
105 106 5.508200 TGGTAAAATATAAAGCCCGCTTG 57.492 39.130 2.03 0.00 36.26 4.01
106 107 4.339814 TGGTAAAATATAAAGCCCGCTTGG 59.660 41.667 2.03 0.00 36.26 3.61
107 108 4.340097 GGTAAAATATAAAGCCCGCTTGGT 59.660 41.667 2.03 0.00 36.26 3.67
108 109 4.649088 AAAATATAAAGCCCGCTTGGTC 57.351 40.909 2.03 0.00 36.26 4.02
109 110 3.290948 AATATAAAGCCCGCTTGGTCA 57.709 42.857 2.03 0.00 36.26 4.02
110 111 3.508845 ATATAAAGCCCGCTTGGTCAT 57.491 42.857 2.03 0.00 36.26 3.06
111 112 2.143876 ATAAAGCCCGCTTGGTCATT 57.856 45.000 2.03 0.00 36.26 2.57
112 113 1.173043 TAAAGCCCGCTTGGTCATTG 58.827 50.000 2.03 0.00 36.26 2.82
113 114 0.827507 AAAGCCCGCTTGGTCATTGT 60.828 50.000 2.03 0.00 36.26 2.71
114 115 1.244019 AAGCCCGCTTGGTCATTGTC 61.244 55.000 0.05 0.00 34.60 3.18
115 116 2.700773 GCCCGCTTGGTCATTGTCC 61.701 63.158 0.00 0.00 36.04 4.02
116 117 2.398554 CCCGCTTGGTCATTGTCCG 61.399 63.158 0.00 0.00 0.00 4.79
117 118 2.480555 CGCTTGGTCATTGTCCGC 59.519 61.111 0.00 0.00 0.00 5.54
118 119 2.480555 GCTTGGTCATTGTCCGCG 59.519 61.111 0.00 0.00 0.00 6.46
119 120 3.039202 GCTTGGTCATTGTCCGCGG 62.039 63.158 22.12 22.12 0.00 6.46
120 121 1.375396 CTTGGTCATTGTCCGCGGA 60.375 57.895 27.28 27.28 0.00 5.54
121 122 1.635663 CTTGGTCATTGTCCGCGGAC 61.636 60.000 43.88 43.88 44.77 4.79
136 137 3.764049 GACGCGTTCAGGCACGTC 61.764 66.667 15.53 0.00 46.64 4.34
141 142 3.041940 GTTCAGGCACGTCCGTGG 61.042 66.667 20.09 5.26 45.49 4.94
142 143 3.228017 TTCAGGCACGTCCGTGGA 61.228 61.111 20.09 7.44 45.49 4.02
143 144 3.509137 TTCAGGCACGTCCGTGGAC 62.509 63.158 20.09 9.04 45.49 4.02
151 152 3.946907 GTCCGTGGACGTTTGAGG 58.053 61.111 2.78 0.00 37.74 3.86
152 153 1.666872 GTCCGTGGACGTTTGAGGG 60.667 63.158 2.78 0.00 37.74 4.30
153 154 2.135581 TCCGTGGACGTTTGAGGGT 61.136 57.895 0.00 0.00 37.74 4.34
154 155 1.666872 CCGTGGACGTTTGAGGGTC 60.667 63.158 0.00 0.00 37.74 4.46
162 163 3.638484 GACGTTTGAGGGTCCAAATTTG 58.362 45.455 11.40 11.40 38.18 2.32
163 164 2.223947 ACGTTTGAGGGTCCAAATTTGC 60.224 45.455 12.92 0.00 38.18 3.68
164 165 2.766313 GTTTGAGGGTCCAAATTTGCC 58.234 47.619 12.92 9.26 38.18 4.52
165 166 0.965439 TTGAGGGTCCAAATTTGCCG 59.035 50.000 12.92 0.35 0.00 5.69
166 167 0.897863 TGAGGGTCCAAATTTGCCGG 60.898 55.000 12.92 0.00 0.00 6.13
167 168 0.898326 GAGGGTCCAAATTTGCCGGT 60.898 55.000 12.92 0.98 0.00 5.28
168 169 0.471022 AGGGTCCAAATTTGCCGGTT 60.471 50.000 12.92 0.00 0.00 4.44
169 170 0.320334 GGGTCCAAATTTGCCGGTTG 60.320 55.000 12.92 0.00 0.00 3.77
170 171 0.948623 GGTCCAAATTTGCCGGTTGC 60.949 55.000 12.92 0.00 41.77 4.17
171 172 1.006805 TCCAAATTTGCCGGTTGCG 60.007 52.632 12.92 0.00 45.60 4.85
172 173 2.026520 CCAAATTTGCCGGTTGCGG 61.027 57.895 12.92 0.00 45.60 5.69
180 181 3.814268 CCGGTTGCGGCTTGGATG 61.814 66.667 0.00 0.00 0.00 3.51
181 182 3.814268 CGGTTGCGGCTTGGATGG 61.814 66.667 0.00 0.00 0.00 3.51
182 183 2.676471 GGTTGCGGCTTGGATGGT 60.676 61.111 0.00 0.00 0.00 3.55
183 184 2.568090 GTTGCGGCTTGGATGGTG 59.432 61.111 0.00 0.00 0.00 4.17
184 185 2.676121 TTGCGGCTTGGATGGTGG 60.676 61.111 0.00 0.00 0.00 4.61
185 186 4.738998 TGCGGCTTGGATGGTGGG 62.739 66.667 0.00 0.00 0.00 4.61
187 188 4.047125 CGGCTTGGATGGTGGGGT 62.047 66.667 0.00 0.00 0.00 4.95
188 189 2.362889 GGCTTGGATGGTGGGGTG 60.363 66.667 0.00 0.00 0.00 4.61
189 190 2.763215 GCTTGGATGGTGGGGTGA 59.237 61.111 0.00 0.00 0.00 4.02
190 191 1.678970 GCTTGGATGGTGGGGTGAC 60.679 63.158 0.00 0.00 0.00 3.67
191 192 1.767036 CTTGGATGGTGGGGTGACA 59.233 57.895 0.00 0.00 0.00 3.58
192 193 0.609131 CTTGGATGGTGGGGTGACAC 60.609 60.000 0.00 0.00 40.60 3.67
193 194 2.046314 GGATGGTGGGGTGACACG 60.046 66.667 0.00 0.00 42.23 4.49
194 195 2.746277 GATGGTGGGGTGACACGC 60.746 66.667 13.97 13.97 45.97 5.34
201 202 2.682494 GGGTGACACGCCTCCCTA 60.682 66.667 11.44 0.00 37.01 3.53
202 203 2.064581 GGGTGACACGCCTCCCTAT 61.065 63.158 11.44 0.00 37.01 2.57
203 204 0.757935 GGGTGACACGCCTCCCTATA 60.758 60.000 11.44 0.00 37.01 1.31
204 205 1.339097 GGTGACACGCCTCCCTATAT 58.661 55.000 0.00 0.00 0.00 0.86
205 206 1.272769 GGTGACACGCCTCCCTATATC 59.727 57.143 0.00 0.00 0.00 1.63
206 207 1.272769 GTGACACGCCTCCCTATATCC 59.727 57.143 0.00 0.00 0.00 2.59
207 208 1.133294 TGACACGCCTCCCTATATCCA 60.133 52.381 0.00 0.00 0.00 3.41
208 209 2.180276 GACACGCCTCCCTATATCCAT 58.820 52.381 0.00 0.00 0.00 3.41
209 210 2.567615 GACACGCCTCCCTATATCCATT 59.432 50.000 0.00 0.00 0.00 3.16
210 211 2.567615 ACACGCCTCCCTATATCCATTC 59.432 50.000 0.00 0.00 0.00 2.67
211 212 1.825474 ACGCCTCCCTATATCCATTCG 59.175 52.381 0.00 0.00 0.00 3.34
212 213 1.825474 CGCCTCCCTATATCCATTCGT 59.175 52.381 0.00 0.00 0.00 3.85
213 214 2.233922 CGCCTCCCTATATCCATTCGTT 59.766 50.000 0.00 0.00 0.00 3.85
214 215 3.600388 GCCTCCCTATATCCATTCGTTG 58.400 50.000 0.00 0.00 0.00 4.10
215 216 3.008049 GCCTCCCTATATCCATTCGTTGT 59.992 47.826 0.00 0.00 0.00 3.32
216 217 4.505039 GCCTCCCTATATCCATTCGTTGTT 60.505 45.833 0.00 0.00 0.00 2.83
217 218 5.238583 CCTCCCTATATCCATTCGTTGTTC 58.761 45.833 0.00 0.00 0.00 3.18
218 219 5.223449 TCCCTATATCCATTCGTTGTTCC 57.777 43.478 0.00 0.00 0.00 3.62
219 220 4.041198 TCCCTATATCCATTCGTTGTTCCC 59.959 45.833 0.00 0.00 0.00 3.97
220 221 4.202419 CCCTATATCCATTCGTTGTTCCCA 60.202 45.833 0.00 0.00 0.00 4.37
221 222 5.373222 CCTATATCCATTCGTTGTTCCCAA 58.627 41.667 0.00 0.00 0.00 4.12
222 223 5.825679 CCTATATCCATTCGTTGTTCCCAAA 59.174 40.000 0.00 0.00 30.94 3.28
223 224 6.490040 CCTATATCCATTCGTTGTTCCCAAAT 59.510 38.462 0.00 0.00 30.94 2.32
224 225 7.663905 CCTATATCCATTCGTTGTTCCCAAATA 59.336 37.037 0.00 0.00 30.94 1.40
225 226 7.889873 ATATCCATTCGTTGTTCCCAAATAA 57.110 32.000 0.00 0.00 30.94 1.40
226 227 5.637006 TCCATTCGTTGTTCCCAAATAAG 57.363 39.130 0.00 0.00 30.94 1.73
227 228 5.317808 TCCATTCGTTGTTCCCAAATAAGA 58.682 37.500 0.00 0.00 30.94 2.10
228 229 5.770663 TCCATTCGTTGTTCCCAAATAAGAA 59.229 36.000 0.00 0.00 30.94 2.52
229 230 6.265649 TCCATTCGTTGTTCCCAAATAAGAAA 59.734 34.615 0.00 0.00 30.94 2.52
230 231 6.926272 CCATTCGTTGTTCCCAAATAAGAAAA 59.074 34.615 0.00 0.00 30.94 2.29
231 232 7.439655 CCATTCGTTGTTCCCAAATAAGAAAAA 59.560 33.333 0.00 0.00 30.94 1.94
232 233 8.987890 CATTCGTTGTTCCCAAATAAGAAAAAT 58.012 29.630 0.00 0.00 30.94 1.82
233 234 8.950208 TTCGTTGTTCCCAAATAAGAAAAATT 57.050 26.923 0.00 0.00 30.94 1.82
234 235 8.359060 TCGTTGTTCCCAAATAAGAAAAATTG 57.641 30.769 0.00 0.00 30.94 2.32
235 236 7.042389 TCGTTGTTCCCAAATAAGAAAAATTGC 60.042 33.333 0.00 0.00 30.94 3.56
236 237 7.254590 CGTTGTTCCCAAATAAGAAAAATTGCA 60.255 33.333 0.00 0.00 30.94 4.08
237 238 8.567104 GTTGTTCCCAAATAAGAAAAATTGCAT 58.433 29.630 0.00 0.00 30.94 3.96
238 239 8.688747 TGTTCCCAAATAAGAAAAATTGCATT 57.311 26.923 0.00 0.00 0.00 3.56
239 240 8.782144 TGTTCCCAAATAAGAAAAATTGCATTC 58.218 29.630 0.00 0.00 0.00 2.67
240 241 7.920160 TCCCAAATAAGAAAAATTGCATTCC 57.080 32.000 0.00 0.00 0.00 3.01
241 242 7.688343 TCCCAAATAAGAAAAATTGCATTCCT 58.312 30.769 0.00 0.00 0.00 3.36
242 243 8.162746 TCCCAAATAAGAAAAATTGCATTCCTT 58.837 29.630 0.00 0.00 0.00 3.36
243 244 8.238631 CCCAAATAAGAAAAATTGCATTCCTTG 58.761 33.333 0.00 0.00 0.00 3.61
244 245 8.785946 CCAAATAAGAAAAATTGCATTCCTTGT 58.214 29.630 0.00 0.00 0.00 3.16
247 248 6.866010 AAGAAAAATTGCATTCCTTGTTCC 57.134 33.333 0.00 0.00 0.00 3.62
248 249 5.308014 AGAAAAATTGCATTCCTTGTTCCC 58.692 37.500 0.00 0.00 0.00 3.97
249 250 3.701205 AAATTGCATTCCTTGTTCCCC 57.299 42.857 0.00 0.00 0.00 4.81
250 251 1.571955 ATTGCATTCCTTGTTCCCCC 58.428 50.000 0.00 0.00 0.00 5.40
251 252 0.897863 TTGCATTCCTTGTTCCCCCG 60.898 55.000 0.00 0.00 0.00 5.73
252 253 2.710902 GCATTCCTTGTTCCCCCGC 61.711 63.158 0.00 0.00 0.00 6.13
253 254 1.304052 CATTCCTTGTTCCCCCGCA 60.304 57.895 0.00 0.00 0.00 5.69
254 255 0.897863 CATTCCTTGTTCCCCCGCAA 60.898 55.000 0.00 0.00 0.00 4.85
255 256 0.178947 ATTCCTTGTTCCCCCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
256 257 0.178947 TTCCTTGTTCCCCCGCAAAT 60.179 50.000 0.00 0.00 0.00 2.32
257 258 0.178947 TCCTTGTTCCCCCGCAAATT 60.179 50.000 0.00 0.00 0.00 1.82
258 259 0.684535 CCTTGTTCCCCCGCAAATTT 59.315 50.000 0.00 0.00 0.00 1.82
259 260 1.071542 CCTTGTTCCCCCGCAAATTTT 59.928 47.619 0.00 0.00 0.00 1.82
260 261 2.486370 CCTTGTTCCCCCGCAAATTTTT 60.486 45.455 0.00 0.00 0.00 1.94
309 324 1.999048 AAACCATGTTCATGCATGCG 58.001 45.000 22.25 7.28 43.46 4.73
385 400 1.014044 AATCGCTACCACACACTGCG 61.014 55.000 0.00 0.00 46.71 5.18
415 430 3.109547 GAACATGTCACGCGGCGA 61.110 61.111 30.94 6.68 0.00 5.54
528 571 3.056322 CCATCATCATCGCCTACTCATCA 60.056 47.826 0.00 0.00 0.00 3.07
529 572 4.382793 CCATCATCATCGCCTACTCATCAT 60.383 45.833 0.00 0.00 0.00 2.45
530 573 4.446994 TCATCATCGCCTACTCATCATC 57.553 45.455 0.00 0.00 0.00 2.92
531 574 2.997485 TCATCGCCTACTCATCATCG 57.003 50.000 0.00 0.00 0.00 3.84
532 575 2.504367 TCATCGCCTACTCATCATCGA 58.496 47.619 0.00 0.00 0.00 3.59
533 576 3.084786 TCATCGCCTACTCATCATCGAT 58.915 45.455 0.00 0.00 37.17 3.59
534 577 3.127721 TCATCGCCTACTCATCATCGATC 59.872 47.826 0.00 0.00 34.91 3.69
535 578 1.464997 TCGCCTACTCATCATCGATCG 59.535 52.381 9.36 9.36 0.00 3.69
552 595 0.530744 TCGGTTGGTTCCATCTCTCG 59.469 55.000 0.00 0.00 0.00 4.04
634 680 0.324614 TGTTGGAGCATCGGTGATGT 59.675 50.000 0.00 0.00 41.60 3.06
635 681 0.729116 GTTGGAGCATCGGTGATGTG 59.271 55.000 0.00 0.00 41.60 3.21
636 682 1.026182 TTGGAGCATCGGTGATGTGC 61.026 55.000 0.00 0.00 41.60 4.57
722 768 2.867975 CGTAACAACCCGGTAATGATCC 59.132 50.000 0.00 0.00 0.00 3.36
724 770 2.710096 ACAACCCGGTAATGATCCAG 57.290 50.000 0.00 0.00 0.00 3.86
741 788 4.430137 TCCAGTGATGTCGTACTAACAC 57.570 45.455 0.00 0.00 0.00 3.32
859 907 1.332195 AAGAGCCACTCCTTTTTGCC 58.668 50.000 0.00 0.00 0.00 4.52
928 976 0.040781 GCAAAGCTGAAAACCGCGTA 60.041 50.000 4.92 0.00 0.00 4.42
929 977 1.670326 CAAAGCTGAAAACCGCGTAC 58.330 50.000 4.92 0.00 0.00 3.67
933 981 0.449993 GCTGAAAACCGCGTACGTTC 60.450 55.000 17.90 12.37 37.70 3.95
985 1033 2.669240 CTCCTGAAACCCCCGTCC 59.331 66.667 0.00 0.00 0.00 4.79
1048 1121 4.630894 TTGTTAGCTGGTTTGTTCACTG 57.369 40.909 0.00 0.00 0.00 3.66
1054 1127 0.459489 TGGTTTGTTCACTGGCTTGC 59.541 50.000 0.00 0.00 0.00 4.01
1076 1149 0.179179 GCTTTGCTGCATTCCTCGTC 60.179 55.000 1.84 0.00 0.00 4.20
1108 1186 3.033419 TGCATGCTGGTTAGTGCAA 57.967 47.368 20.33 0.00 43.83 4.08
1117 1202 3.061697 GCTGGTTAGTGCAATGTACGTAC 59.938 47.826 18.90 18.90 0.00 3.67
1143 1236 0.464554 GCATGTCTTGGTAGGGAGCC 60.465 60.000 0.00 0.00 0.00 4.70
1147 1240 0.984995 GTCTTGGTAGGGAGCCTGTT 59.015 55.000 0.00 0.00 34.61 3.16
1223 1319 2.533463 GGGGATGATGGGGAGCCTC 61.533 68.421 0.00 0.00 0.00 4.70
1430 1526 3.876589 GACGGCGCTCAACTTCCCA 62.877 63.158 6.90 0.00 0.00 4.37
1439 1535 3.936203 AACTTCCCAGACGCGGCA 61.936 61.111 17.71 0.00 0.00 5.69
1538 1634 3.007920 AGCACCTGGGCTCCTCAG 61.008 66.667 0.00 0.00 41.05 3.35
1559 1655 2.511600 AGCGACCAATGCTACGGC 60.512 61.111 0.00 0.00 41.87 5.68
1782 1887 2.373169 AGCTTGTGGGATCACTCTTGAA 59.627 45.455 0.00 0.00 43.94 2.69
1783 1888 3.009916 AGCTTGTGGGATCACTCTTGAAT 59.990 43.478 0.00 0.00 43.94 2.57
1785 1890 4.841422 CTTGTGGGATCACTCTTGAATCT 58.159 43.478 0.00 0.00 43.94 2.40
1786 1891 4.916041 TGTGGGATCACTCTTGAATCTT 57.084 40.909 0.00 0.00 43.94 2.40
1787 1892 4.582869 TGTGGGATCACTCTTGAATCTTG 58.417 43.478 0.00 0.00 43.94 3.02
1788 1893 4.286808 TGTGGGATCACTCTTGAATCTTGA 59.713 41.667 0.00 0.00 43.94 3.02
1869 1974 1.826921 GAGCCCATGCCATGACCTG 60.827 63.158 6.18 0.00 38.69 4.00
1894 1999 1.078497 GTGGTGATGTGGGATCGCA 60.078 57.895 8.63 8.63 37.83 5.10
1980 2086 3.930229 TGTACGTAGCATGGATGTGAAAC 59.070 43.478 0.00 0.00 37.35 2.78
1981 2087 2.356135 ACGTAGCATGGATGTGAAACC 58.644 47.619 0.00 0.00 34.36 3.27
2033 2141 9.962809 ATACATACTCTACTGATTACTACTCCC 57.037 37.037 0.00 0.00 0.00 4.30
2034 2142 8.048016 ACATACTCTACTGATTACTACTCCCT 57.952 38.462 0.00 0.00 0.00 4.20
2035 2143 8.158789 ACATACTCTACTGATTACTACTCCCTC 58.841 40.741 0.00 0.00 0.00 4.30
2036 2144 6.835029 ACTCTACTGATTACTACTCCCTCT 57.165 41.667 0.00 0.00 0.00 3.69
2037 2145 6.597562 ACTCTACTGATTACTACTCCCTCTG 58.402 44.000 0.00 0.00 0.00 3.35
2038 2146 6.159046 ACTCTACTGATTACTACTCCCTCTGT 59.841 42.308 0.00 0.00 0.00 3.41
2039 2147 7.347748 ACTCTACTGATTACTACTCCCTCTGTA 59.652 40.741 0.00 0.00 0.00 2.74
2040 2148 8.098963 TCTACTGATTACTACTCCCTCTGTAA 57.901 38.462 0.00 0.00 0.00 2.41
2041 2149 8.554870 TCTACTGATTACTACTCCCTCTGTAAA 58.445 37.037 0.00 0.00 0.00 2.01
2042 2150 7.648039 ACTGATTACTACTCCCTCTGTAAAG 57.352 40.000 0.00 0.00 0.00 1.85
2043 2151 7.411808 ACTGATTACTACTCCCTCTGTAAAGA 58.588 38.462 0.00 0.00 0.00 2.52
2044 2152 7.894364 ACTGATTACTACTCCCTCTGTAAAGAA 59.106 37.037 0.00 0.00 0.00 2.52
2045 2153 8.660295 TGATTACTACTCCCTCTGTAAAGAAA 57.340 34.615 0.00 0.00 0.00 2.52
2046 2154 9.268282 TGATTACTACTCCCTCTGTAAAGAAAT 57.732 33.333 0.00 0.00 0.00 2.17
2054 2162 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2055 2163 8.554490 TCCCTCTGTAAAGAAATATAAGAGCT 57.446 34.615 0.00 0.00 0.00 4.09
2056 2164 8.993424 TCCCTCTGTAAAGAAATATAAGAGCTT 58.007 33.333 0.00 0.00 0.00 3.74
2057 2165 9.620259 CCCTCTGTAAAGAAATATAAGAGCTTT 57.380 33.333 0.00 0.00 33.76 3.51
2073 2181 7.583860 AAGAGCTTTAGTGATCTAAACGTTC 57.416 36.000 0.00 0.00 40.05 3.95
2074 2182 6.926313 AGAGCTTTAGTGATCTAAACGTTCT 58.074 36.000 0.00 0.00 40.05 3.01
2075 2183 7.379750 AGAGCTTTAGTGATCTAAACGTTCTT 58.620 34.615 0.00 0.00 40.05 2.52
2076 2184 8.521176 AGAGCTTTAGTGATCTAAACGTTCTTA 58.479 33.333 0.00 0.00 40.05 2.10
2077 2185 9.303537 GAGCTTTAGTGATCTAAACGTTCTTAT 57.696 33.333 0.00 0.00 40.05 1.73
2106 2214 8.546597 TTTTTACGGTGAAAGTAGTTATACCC 57.453 34.615 9.23 0.00 31.78 3.69
2107 2215 6.849085 TTACGGTGAAAGTAGTTATACCCA 57.151 37.500 9.23 0.00 31.78 4.51
2108 2216 5.945144 ACGGTGAAAGTAGTTATACCCAT 57.055 39.130 9.23 0.00 31.78 4.00
2109 2217 6.303903 ACGGTGAAAGTAGTTATACCCATT 57.696 37.500 9.23 0.00 31.78 3.16
2110 2218 6.110707 ACGGTGAAAGTAGTTATACCCATTG 58.889 40.000 9.23 1.10 31.78 2.82
2111 2219 6.070653 ACGGTGAAAGTAGTTATACCCATTGA 60.071 38.462 9.23 0.00 31.78 2.57
2112 2220 6.990349 CGGTGAAAGTAGTTATACCCATTGAT 59.010 38.462 9.23 0.00 31.78 2.57
2113 2221 8.145767 CGGTGAAAGTAGTTATACCCATTGATA 58.854 37.037 9.23 0.00 31.78 2.15
2153 2261 9.911788 AATTGTATGATGATATTGGGTAGGATC 57.088 33.333 0.00 0.00 0.00 3.36
2154 2262 8.685257 TTGTATGATGATATTGGGTAGGATCT 57.315 34.615 0.00 0.00 0.00 2.75
2155 2263 8.685257 TGTATGATGATATTGGGTAGGATCTT 57.315 34.615 0.00 0.00 0.00 2.40
2156 2264 9.782900 TGTATGATGATATTGGGTAGGATCTTA 57.217 33.333 0.00 0.00 0.00 2.10
2212 2320 8.668510 TTGTTATGTGTTTATTGCAATTTGGT 57.331 26.923 18.75 0.00 0.00 3.67
2213 2321 8.668510 TGTTATGTGTTTATTGCAATTTGGTT 57.331 26.923 18.75 0.00 0.00 3.67
2214 2322 8.554528 TGTTATGTGTTTATTGCAATTTGGTTG 58.445 29.630 18.75 0.00 40.90 3.77
2215 2323 8.768955 GTTATGTGTTTATTGCAATTTGGTTGA 58.231 29.630 18.75 0.00 40.37 3.18
2216 2324 7.982761 ATGTGTTTATTGCAATTTGGTTGAT 57.017 28.000 18.75 0.00 40.37 2.57
2218 2326 9.669887 ATGTGTTTATTGCAATTTGGTTGATAT 57.330 25.926 18.75 0.00 40.37 1.63
2219 2327 9.499479 TGTGTTTATTGCAATTTGGTTGATATT 57.501 25.926 18.75 0.00 40.37 1.28
2227 2335 8.994429 TGCAATTTGGTTGATATTAATTTCGT 57.006 26.923 0.00 0.00 40.37 3.85
2228 2336 8.867935 TGCAATTTGGTTGATATTAATTTCGTG 58.132 29.630 0.00 0.00 40.37 4.35
2229 2337 7.845622 GCAATTTGGTTGATATTAATTTCGTGC 59.154 33.333 0.00 0.00 40.37 5.34
2230 2338 9.086336 CAATTTGGTTGATATTAATTTCGTGCT 57.914 29.630 0.00 0.00 40.37 4.40
2234 2342 9.562583 TTGGTTGATATTAATTTCGTGCTAAAC 57.437 29.630 0.00 0.00 0.00 2.01
2235 2343 8.731605 TGGTTGATATTAATTTCGTGCTAAACA 58.268 29.630 0.00 0.00 0.00 2.83
2236 2344 9.730420 GGTTGATATTAATTTCGTGCTAAACAT 57.270 29.630 0.00 0.00 0.00 2.71
2241 2349 6.683090 TTAATTTCGTGCTAAACATGTTGC 57.317 33.333 12.82 12.74 36.60 4.17
2242 2350 3.699779 TTTCGTGCTAAACATGTTGCA 57.300 38.095 17.07 17.07 36.60 4.08
2243 2351 3.913548 TTCGTGCTAAACATGTTGCAT 57.086 38.095 22.05 6.67 37.76 3.96
2244 2352 3.200294 TCGTGCTAAACATGTTGCATG 57.800 42.857 25.97 25.97 41.99 4.06
2245 2353 1.650153 CGTGCTAAACATGTTGCATGC 59.350 47.619 22.68 11.82 37.76 4.06
2246 2354 2.669113 CGTGCTAAACATGTTGCATGCT 60.669 45.455 22.68 6.77 37.76 3.79
2247 2355 2.919229 GTGCTAAACATGTTGCATGCTC 59.081 45.455 22.05 15.27 37.76 4.26
2248 2356 2.557490 TGCTAAACATGTTGCATGCTCA 59.443 40.909 20.33 17.68 0.00 4.26
2249 2357 3.005578 TGCTAAACATGTTGCATGCTCAA 59.994 39.130 20.33 2.28 0.00 3.02
2250 2358 4.178540 GCTAAACATGTTGCATGCTCAAT 58.821 39.130 20.33 6.50 0.00 2.57
2251 2359 4.628333 GCTAAACATGTTGCATGCTCAATT 59.372 37.500 20.33 15.17 0.00 2.32
2252 2360 5.121142 GCTAAACATGTTGCATGCTCAATTT 59.879 36.000 20.33 20.43 0.00 1.82
2253 2361 5.351233 AAACATGTTGCATGCTCAATTTG 57.649 34.783 20.33 14.50 0.00 2.32
2254 2362 3.997762 ACATGTTGCATGCTCAATTTGT 58.002 36.364 20.33 15.07 0.00 2.83
2255 2363 5.136816 ACATGTTGCATGCTCAATTTGTA 57.863 34.783 20.33 0.00 0.00 2.41
2256 2364 5.726397 ACATGTTGCATGCTCAATTTGTAT 58.274 33.333 20.33 0.00 0.00 2.29
2257 2365 6.167685 ACATGTTGCATGCTCAATTTGTATT 58.832 32.000 20.33 0.00 0.00 1.89
2258 2366 6.091577 ACATGTTGCATGCTCAATTTGTATTG 59.908 34.615 20.33 12.04 42.06 1.90
2259 2367 5.780984 TGTTGCATGCTCAATTTGTATTGA 58.219 33.333 20.33 0.00 45.99 2.57
2260 2368 5.634439 TGTTGCATGCTCAATTTGTATTGAC 59.366 36.000 20.33 0.00 43.93 3.18
2261 2369 5.388408 TGCATGCTCAATTTGTATTGACA 57.612 34.783 20.33 0.00 43.93 3.58
2262 2370 5.968254 TGCATGCTCAATTTGTATTGACAT 58.032 33.333 20.33 0.00 43.93 3.06
2263 2371 5.808030 TGCATGCTCAATTTGTATTGACATG 59.192 36.000 20.33 22.20 46.51 3.21
2264 2372 6.037726 GCATGCTCAATTTGTATTGACATGA 58.962 36.000 25.99 8.16 46.58 3.07
2265 2373 6.700081 GCATGCTCAATTTGTATTGACATGAT 59.300 34.615 25.99 4.37 46.58 2.45
2266 2374 7.223971 GCATGCTCAATTTGTATTGACATGATT 59.776 33.333 25.99 8.63 46.58 2.57
2267 2375 8.539674 CATGCTCAATTTGTATTGACATGATTG 58.460 33.333 22.12 13.60 46.58 2.67
2268 2376 7.036829 TGCTCAATTTGTATTGACATGATTGG 58.963 34.615 0.00 0.00 43.93 3.16
2269 2377 7.093858 TGCTCAATTTGTATTGACATGATTGGA 60.094 33.333 0.00 0.00 43.93 3.53
2270 2378 7.924412 GCTCAATTTGTATTGACATGATTGGAT 59.076 33.333 0.00 0.00 43.93 3.41
2275 2383 9.631257 ATTTGTATTGACATGATTGGATAGTCA 57.369 29.630 0.00 0.00 37.43 3.41
2281 2389 7.128234 TGACATGATTGGATAGTCAAGATCA 57.872 36.000 0.00 0.00 36.39 2.92
2282 2390 7.567458 TGACATGATTGGATAGTCAAGATCAA 58.433 34.615 0.00 0.00 36.39 2.57
2283 2391 8.215736 TGACATGATTGGATAGTCAAGATCAAT 58.784 33.333 0.00 0.00 36.39 2.57
2284 2392 8.991783 ACATGATTGGATAGTCAAGATCAATT 57.008 30.769 0.00 0.00 0.00 2.32
2285 2393 8.847196 ACATGATTGGATAGTCAAGATCAATTG 58.153 33.333 0.00 0.00 0.00 2.32
2286 2394 7.812690 TGATTGGATAGTCAAGATCAATTGG 57.187 36.000 5.42 0.00 0.00 3.16
2287 2395 7.348815 TGATTGGATAGTCAAGATCAATTGGT 58.651 34.615 5.42 0.00 0.00 3.67
2288 2396 7.835682 TGATTGGATAGTCAAGATCAATTGGTT 59.164 33.333 5.42 0.00 0.00 3.67
2289 2397 7.395190 TTGGATAGTCAAGATCAATTGGTTG 57.605 36.000 5.42 7.56 36.65 3.77
2290 2398 6.484288 TGGATAGTCAAGATCAATTGGTTGT 58.516 36.000 5.42 0.00 36.69 3.32
2291 2399 6.599244 TGGATAGTCAAGATCAATTGGTTGTC 59.401 38.462 5.42 5.62 36.69 3.18
2292 2400 6.038714 GGATAGTCAAGATCAATTGGTTGTCC 59.961 42.308 5.42 6.65 36.69 4.02
2293 2401 4.082125 AGTCAAGATCAATTGGTTGTCCC 58.918 43.478 5.42 1.82 36.69 4.46
2294 2402 4.082125 GTCAAGATCAATTGGTTGTCCCT 58.918 43.478 5.42 0.00 36.69 4.20
2295 2403 4.524328 GTCAAGATCAATTGGTTGTCCCTT 59.476 41.667 5.42 0.00 36.69 3.95
2296 2404 5.011023 GTCAAGATCAATTGGTTGTCCCTTT 59.989 40.000 5.42 0.00 36.69 3.11
2297 2405 5.010922 TCAAGATCAATTGGTTGTCCCTTTG 59.989 40.000 5.42 1.77 36.69 2.77
2298 2406 3.834231 AGATCAATTGGTTGTCCCTTTGG 59.166 43.478 5.42 0.00 36.69 3.28
2299 2407 3.320610 TCAATTGGTTGTCCCTTTGGA 57.679 42.857 5.42 0.00 36.69 3.53
2300 2408 3.855668 TCAATTGGTTGTCCCTTTGGAT 58.144 40.909 5.42 0.00 44.28 3.41
2301 2409 3.831911 TCAATTGGTTGTCCCTTTGGATC 59.168 43.478 5.42 0.00 44.28 3.36
2302 2410 3.833559 ATTGGTTGTCCCTTTGGATCT 57.166 42.857 0.00 0.00 44.28 2.75
2303 2411 3.611025 TTGGTTGTCCCTTTGGATCTT 57.389 42.857 0.00 0.00 44.28 2.40
2304 2412 3.611025 TGGTTGTCCCTTTGGATCTTT 57.389 42.857 0.00 0.00 44.28 2.52
2305 2413 3.922375 TGGTTGTCCCTTTGGATCTTTT 58.078 40.909 0.00 0.00 44.28 2.27
2306 2414 4.294347 TGGTTGTCCCTTTGGATCTTTTT 58.706 39.130 0.00 0.00 44.28 1.94
2307 2415 5.459505 TGGTTGTCCCTTTGGATCTTTTTA 58.540 37.500 0.00 0.00 44.28 1.52
2308 2416 6.081356 TGGTTGTCCCTTTGGATCTTTTTAT 58.919 36.000 0.00 0.00 44.28 1.40
2309 2417 6.556874 TGGTTGTCCCTTTGGATCTTTTTATT 59.443 34.615 0.00 0.00 44.28 1.40
2310 2418 7.071824 TGGTTGTCCCTTTGGATCTTTTTATTT 59.928 33.333 0.00 0.00 44.28 1.40
2311 2419 8.590204 GGTTGTCCCTTTGGATCTTTTTATTTA 58.410 33.333 0.00 0.00 44.28 1.40
2832 2947 5.163152 GGAGAGATGGTAAAATGGAGTGGAT 60.163 44.000 0.00 0.00 0.00 3.41
2868 2989 1.740380 GCCAGCGTGAGAAAGATGCTA 60.740 52.381 0.00 0.00 33.80 3.49
2887 3008 5.658468 TGCTATGTTGTCTCATTCTCTCTG 58.342 41.667 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.778993 CCATCAATTTAGATGTTTTAGTCTGTG 57.221 33.333 5.36 0.00 43.00 3.66
1 2 9.739276 TCCATCAATTTAGATGTTTTAGTCTGT 57.261 29.630 5.36 0.00 43.00 3.41
2 3 9.994432 GTCCATCAATTTAGATGTTTTAGTCTG 57.006 33.333 5.36 0.00 43.00 3.51
3 4 9.739276 TGTCCATCAATTTAGATGTTTTAGTCT 57.261 29.630 5.36 0.00 43.00 3.24
10 11 9.412460 ACATGTATGTCCATCAATTTAGATGTT 57.588 29.630 0.00 0.00 37.56 2.71
11 12 8.843262 CACATGTATGTCCATCAATTTAGATGT 58.157 33.333 0.00 0.00 40.32 3.06
12 13 8.843262 ACACATGTATGTCCATCAATTTAGATG 58.157 33.333 0.00 0.00 40.95 2.90
15 16 9.292846 CAAACACATGTATGTCCATCAATTTAG 57.707 33.333 0.00 0.00 39.39 1.85
17 18 6.591062 GCAAACACATGTATGTCCATCAATTT 59.409 34.615 0.00 0.00 39.39 1.82
20 21 4.522022 TGCAAACACATGTATGTCCATCAA 59.478 37.500 0.00 0.00 39.39 2.57
21 22 4.077822 TGCAAACACATGTATGTCCATCA 58.922 39.130 0.00 0.00 39.39 3.07
22 23 4.700268 TGCAAACACATGTATGTCCATC 57.300 40.909 0.00 0.00 39.39 3.51
23 24 5.001237 CATGCAAACACATGTATGTCCAT 57.999 39.130 0.00 0.00 42.05 3.41
24 25 4.437772 CATGCAAACACATGTATGTCCA 57.562 40.909 0.00 0.00 42.05 4.02
33 34 5.902613 ACAGCTAATACATGCAAACACAT 57.097 34.783 0.00 0.00 0.00 3.21
34 35 5.703978 AACAGCTAATACATGCAAACACA 57.296 34.783 0.00 0.00 0.00 3.72
35 36 6.640499 TCAAAACAGCTAATACATGCAAACAC 59.360 34.615 0.00 0.00 0.00 3.32
36 37 6.743110 TCAAAACAGCTAATACATGCAAACA 58.257 32.000 0.00 0.00 0.00 2.83
37 38 7.636259 TTCAAAACAGCTAATACATGCAAAC 57.364 32.000 0.00 0.00 0.00 2.93
38 39 8.654230 TTTTCAAAACAGCTAATACATGCAAA 57.346 26.923 0.00 0.00 0.00 3.68
39 40 8.830201 ATTTTCAAAACAGCTAATACATGCAA 57.170 26.923 0.00 0.00 0.00 4.08
49 50 9.868277 CCATAAACCATATTTTCAAAACAGCTA 57.132 29.630 0.00 0.00 0.00 3.32
50 51 7.334171 GCCATAAACCATATTTTCAAAACAGCT 59.666 33.333 0.00 0.00 0.00 4.24
51 52 7.334171 AGCCATAAACCATATTTTCAAAACAGC 59.666 33.333 0.00 0.00 0.00 4.40
52 53 8.658609 CAGCCATAAACCATATTTTCAAAACAG 58.341 33.333 0.00 0.00 0.00 3.16
53 54 7.118971 GCAGCCATAAACCATATTTTCAAAACA 59.881 33.333 0.00 0.00 0.00 2.83
54 55 7.118971 TGCAGCCATAAACCATATTTTCAAAAC 59.881 33.333 0.00 0.00 0.00 2.43
55 56 7.164122 TGCAGCCATAAACCATATTTTCAAAA 58.836 30.769 0.00 0.00 0.00 2.44
56 57 6.705302 TGCAGCCATAAACCATATTTTCAAA 58.295 32.000 0.00 0.00 0.00 2.69
57 58 6.291648 TGCAGCCATAAACCATATTTTCAA 57.708 33.333 0.00 0.00 0.00 2.69
58 59 5.929058 TGCAGCCATAAACCATATTTTCA 57.071 34.783 0.00 0.00 0.00 2.69
59 60 7.254863 CCATTTGCAGCCATAAACCATATTTTC 60.255 37.037 0.00 0.00 0.00 2.29
60 61 6.543100 CCATTTGCAGCCATAAACCATATTTT 59.457 34.615 0.00 0.00 0.00 1.82
61 62 6.056884 CCATTTGCAGCCATAAACCATATTT 58.943 36.000 0.00 0.00 0.00 1.40
62 63 5.130809 ACCATTTGCAGCCATAAACCATATT 59.869 36.000 0.00 0.00 0.00 1.28
63 64 4.655186 ACCATTTGCAGCCATAAACCATAT 59.345 37.500 0.00 0.00 0.00 1.78
64 65 4.029520 ACCATTTGCAGCCATAAACCATA 58.970 39.130 0.00 0.00 0.00 2.74
65 66 2.839425 ACCATTTGCAGCCATAAACCAT 59.161 40.909 0.00 0.00 0.00 3.55
66 67 2.255406 ACCATTTGCAGCCATAAACCA 58.745 42.857 0.00 0.00 0.00 3.67
67 68 4.464069 TTACCATTTGCAGCCATAAACC 57.536 40.909 0.00 0.00 0.00 3.27
68 69 6.983474 ATTTTACCATTTGCAGCCATAAAC 57.017 33.333 0.00 0.00 0.00 2.01
71 72 9.979578 CTTTATATTTTACCATTTGCAGCCATA 57.020 29.630 0.00 0.00 0.00 2.74
72 73 7.442062 GCTTTATATTTTACCATTTGCAGCCAT 59.558 33.333 0.00 0.00 0.00 4.40
73 74 6.760770 GCTTTATATTTTACCATTTGCAGCCA 59.239 34.615 0.00 0.00 0.00 4.75
74 75 6.202762 GGCTTTATATTTTACCATTTGCAGCC 59.797 38.462 0.00 0.00 34.23 4.85
75 76 6.202762 GGGCTTTATATTTTACCATTTGCAGC 59.797 38.462 0.00 0.00 0.00 5.25
76 77 6.420604 CGGGCTTTATATTTTACCATTTGCAG 59.579 38.462 0.00 0.00 0.00 4.41
77 78 6.276847 CGGGCTTTATATTTTACCATTTGCA 58.723 36.000 0.00 0.00 0.00 4.08
78 79 5.176774 GCGGGCTTTATATTTTACCATTTGC 59.823 40.000 0.00 0.00 0.00 3.68
79 80 6.512297 AGCGGGCTTTATATTTTACCATTTG 58.488 36.000 0.00 0.00 0.00 2.32
80 81 6.724893 AGCGGGCTTTATATTTTACCATTT 57.275 33.333 0.00 0.00 0.00 2.32
81 82 6.462347 CCAAGCGGGCTTTATATTTTACCATT 60.462 38.462 2.58 0.00 33.42 3.16
82 83 5.010617 CCAAGCGGGCTTTATATTTTACCAT 59.989 40.000 2.58 0.00 33.42 3.55
83 84 4.339814 CCAAGCGGGCTTTATATTTTACCA 59.660 41.667 2.58 0.00 33.42 3.25
84 85 4.340097 ACCAAGCGGGCTTTATATTTTACC 59.660 41.667 2.58 0.00 42.05 2.85
85 86 5.066764 TGACCAAGCGGGCTTTATATTTTAC 59.933 40.000 2.58 0.00 43.17 2.01
86 87 5.194432 TGACCAAGCGGGCTTTATATTTTA 58.806 37.500 2.58 0.00 43.17 1.52
87 88 4.020543 TGACCAAGCGGGCTTTATATTTT 58.979 39.130 2.58 0.00 43.17 1.82
88 89 3.626930 TGACCAAGCGGGCTTTATATTT 58.373 40.909 2.58 0.00 43.17 1.40
89 90 3.290948 TGACCAAGCGGGCTTTATATT 57.709 42.857 2.58 0.00 43.17 1.28
90 91 3.508845 ATGACCAAGCGGGCTTTATAT 57.491 42.857 2.58 0.00 43.17 0.86
91 92 2.948979 CAATGACCAAGCGGGCTTTATA 59.051 45.455 2.58 0.00 43.17 0.98
92 93 1.750778 CAATGACCAAGCGGGCTTTAT 59.249 47.619 2.58 0.00 43.17 1.40
93 94 1.173043 CAATGACCAAGCGGGCTTTA 58.827 50.000 2.58 0.00 43.17 1.85
94 95 0.827507 ACAATGACCAAGCGGGCTTT 60.828 50.000 2.58 0.00 43.17 3.51
95 96 1.228552 ACAATGACCAAGCGGGCTT 60.229 52.632 0.00 0.00 43.17 4.35
96 97 1.675641 GACAATGACCAAGCGGGCT 60.676 57.895 0.00 0.00 43.17 5.19
97 98 2.700773 GGACAATGACCAAGCGGGC 61.701 63.158 0.00 0.00 42.99 6.13
98 99 2.398554 CGGACAATGACCAAGCGGG 61.399 63.158 2.35 0.00 44.81 6.13
99 100 3.039202 GCGGACAATGACCAAGCGG 62.039 63.158 2.35 0.00 38.77 5.52
100 101 2.480555 GCGGACAATGACCAAGCG 59.519 61.111 2.35 0.00 0.00 4.68
101 102 2.480555 CGCGGACAATGACCAAGC 59.519 61.111 0.00 0.00 0.00 4.01
102 103 1.375396 TCCGCGGACAATGACCAAG 60.375 57.895 27.28 0.00 0.00 3.61
103 104 1.669760 GTCCGCGGACAATGACCAA 60.670 57.895 44.88 12.82 44.02 3.67
104 105 2.047655 GTCCGCGGACAATGACCA 60.048 61.111 44.88 13.64 44.02 4.02
105 106 3.186047 CGTCCGCGGACAATGACC 61.186 66.667 46.26 25.87 44.77 4.02
106 107 3.849953 GCGTCCGCGGACAATGAC 61.850 66.667 46.26 29.92 44.77 3.06
124 125 3.041940 CCACGGACGTGCCTGAAC 61.042 66.667 18.57 0.00 44.16 3.18
125 126 3.228017 TCCACGGACGTGCCTGAA 61.228 61.111 18.57 0.00 44.16 3.02
126 127 3.986006 GTCCACGGACGTGCCTGA 61.986 66.667 18.57 8.53 44.16 3.86
134 135 1.666872 CCCTCAAACGTCCACGGAC 60.667 63.158 6.12 6.12 44.95 4.79
135 136 2.091102 GACCCTCAAACGTCCACGGA 62.091 60.000 3.81 0.00 44.95 4.69
136 137 1.666872 GACCCTCAAACGTCCACGG 60.667 63.158 3.81 0.00 44.95 4.94
137 138 1.666872 GGACCCTCAAACGTCCACG 60.667 63.158 0.00 0.00 46.59 4.94
138 139 4.373771 GGACCCTCAAACGTCCAC 57.626 61.111 1.38 0.00 46.59 4.02
141 142 3.638484 CAAATTTGGACCCTCAAACGTC 58.362 45.455 10.49 0.00 39.13 4.34
142 143 2.223947 GCAAATTTGGACCCTCAAACGT 60.224 45.455 19.47 0.00 39.13 3.99
143 144 2.403259 GCAAATTTGGACCCTCAAACG 58.597 47.619 19.47 0.00 39.13 3.60
144 145 2.766313 GGCAAATTTGGACCCTCAAAC 58.234 47.619 19.47 0.00 39.13 2.93
145 146 1.342819 CGGCAAATTTGGACCCTCAAA 59.657 47.619 19.47 0.00 40.37 2.69
146 147 0.965439 CGGCAAATTTGGACCCTCAA 59.035 50.000 19.47 0.00 0.00 3.02
147 148 0.897863 CCGGCAAATTTGGACCCTCA 60.898 55.000 19.47 0.00 0.00 3.86
148 149 0.898326 ACCGGCAAATTTGGACCCTC 60.898 55.000 19.47 1.77 0.00 4.30
149 150 0.471022 AACCGGCAAATTTGGACCCT 60.471 50.000 19.47 0.00 0.00 4.34
150 151 0.320334 CAACCGGCAAATTTGGACCC 60.320 55.000 19.47 11.14 0.00 4.46
151 152 0.948623 GCAACCGGCAAATTTGGACC 60.949 55.000 19.47 11.82 43.97 4.46
152 153 1.281566 CGCAACCGGCAAATTTGGAC 61.282 55.000 19.47 3.91 45.17 4.02
153 154 1.006805 CGCAACCGGCAAATTTGGA 60.007 52.632 19.47 0.00 45.17 3.53
154 155 3.548280 CGCAACCGGCAAATTTGG 58.452 55.556 19.47 5.93 45.17 3.28
164 165 3.814268 CCATCCAAGCCGCAACCG 61.814 66.667 0.00 0.00 0.00 4.44
165 166 2.676471 ACCATCCAAGCCGCAACC 60.676 61.111 0.00 0.00 0.00 3.77
166 167 2.568090 CACCATCCAAGCCGCAAC 59.432 61.111 0.00 0.00 0.00 4.17
167 168 2.676121 CCACCATCCAAGCCGCAA 60.676 61.111 0.00 0.00 0.00 4.85
168 169 4.738998 CCCACCATCCAAGCCGCA 62.739 66.667 0.00 0.00 0.00 5.69
170 171 4.047125 ACCCCACCATCCAAGCCG 62.047 66.667 0.00 0.00 0.00 5.52
171 172 2.362889 CACCCCACCATCCAAGCC 60.363 66.667 0.00 0.00 0.00 4.35
172 173 1.678970 GTCACCCCACCATCCAAGC 60.679 63.158 0.00 0.00 0.00 4.01
173 174 0.609131 GTGTCACCCCACCATCCAAG 60.609 60.000 0.00 0.00 0.00 3.61
174 175 1.458486 GTGTCACCCCACCATCCAA 59.542 57.895 0.00 0.00 0.00 3.53
175 176 2.889606 CGTGTCACCCCACCATCCA 61.890 63.158 0.00 0.00 31.47 3.41
176 177 2.046314 CGTGTCACCCCACCATCC 60.046 66.667 0.00 0.00 31.47 3.51
177 178 2.746277 GCGTGTCACCCCACCATC 60.746 66.667 0.00 0.00 31.47 3.51
178 179 4.344865 GGCGTGTCACCCCACCAT 62.345 66.667 1.54 0.00 31.47 3.55
180 181 4.699522 GAGGCGTGTCACCCCACC 62.700 72.222 9.34 0.70 31.47 4.61
181 182 4.699522 GGAGGCGTGTCACCCCAC 62.700 72.222 9.34 2.62 0.00 4.61
184 185 0.757935 TATAGGGAGGCGTGTCACCC 60.758 60.000 0.00 0.00 42.36 4.61
185 186 1.272769 GATATAGGGAGGCGTGTCACC 59.727 57.143 0.00 0.00 0.00 4.02
186 187 1.272769 GGATATAGGGAGGCGTGTCAC 59.727 57.143 0.00 0.00 0.00 3.67
187 188 1.133294 TGGATATAGGGAGGCGTGTCA 60.133 52.381 0.00 0.00 0.00 3.58
188 189 1.629043 TGGATATAGGGAGGCGTGTC 58.371 55.000 0.00 0.00 0.00 3.67
189 190 2.327325 ATGGATATAGGGAGGCGTGT 57.673 50.000 0.00 0.00 0.00 4.49
190 191 2.417379 CGAATGGATATAGGGAGGCGTG 60.417 54.545 0.00 0.00 0.00 5.34
191 192 1.825474 CGAATGGATATAGGGAGGCGT 59.175 52.381 0.00 0.00 0.00 5.68
192 193 1.825474 ACGAATGGATATAGGGAGGCG 59.175 52.381 0.00 0.00 0.00 5.52
193 194 3.008049 ACAACGAATGGATATAGGGAGGC 59.992 47.826 0.00 0.00 0.00 4.70
194 195 4.891992 ACAACGAATGGATATAGGGAGG 57.108 45.455 0.00 0.00 0.00 4.30
195 196 5.238583 GGAACAACGAATGGATATAGGGAG 58.761 45.833 0.00 0.00 0.00 4.30
196 197 4.041198 GGGAACAACGAATGGATATAGGGA 59.959 45.833 0.00 0.00 0.00 4.20
197 198 4.202419 TGGGAACAACGAATGGATATAGGG 60.202 45.833 0.00 0.00 37.44 3.53
198 199 4.968259 TGGGAACAACGAATGGATATAGG 58.032 43.478 0.00 0.00 37.44 2.57
212 213 9.129532 AATGCAATTTTTCTTATTTGGGAACAA 57.870 25.926 0.00 0.00 41.21 2.83
213 214 8.688747 AATGCAATTTTTCTTATTTGGGAACA 57.311 26.923 0.00 0.00 26.74 3.18
214 215 8.236586 GGAATGCAATTTTTCTTATTTGGGAAC 58.763 33.333 0.00 0.00 36.07 3.62
215 216 8.162746 AGGAATGCAATTTTTCTTATTTGGGAA 58.837 29.630 0.00 0.00 36.07 3.97
216 217 7.688343 AGGAATGCAATTTTTCTTATTTGGGA 58.312 30.769 0.00 0.00 36.07 4.37
217 218 7.926674 AGGAATGCAATTTTTCTTATTTGGG 57.073 32.000 0.00 0.00 36.07 4.12
218 219 8.785946 ACAAGGAATGCAATTTTTCTTATTTGG 58.214 29.630 0.00 0.00 36.07 3.28
221 222 9.002600 GGAACAAGGAATGCAATTTTTCTTATT 57.997 29.630 0.00 0.00 36.07 1.40
222 223 7.607607 GGGAACAAGGAATGCAATTTTTCTTAT 59.392 33.333 0.00 0.00 36.07 1.73
223 224 6.934083 GGGAACAAGGAATGCAATTTTTCTTA 59.066 34.615 0.00 0.00 36.07 2.10
224 225 5.764686 GGGAACAAGGAATGCAATTTTTCTT 59.235 36.000 0.00 0.00 36.07 2.52
225 226 5.308014 GGGAACAAGGAATGCAATTTTTCT 58.692 37.500 0.00 0.00 36.07 2.52
226 227 4.455533 GGGGAACAAGGAATGCAATTTTTC 59.544 41.667 0.00 0.00 36.07 2.29
227 228 4.397420 GGGGAACAAGGAATGCAATTTTT 58.603 39.130 0.00 0.00 36.07 1.94
228 229 3.244875 GGGGGAACAAGGAATGCAATTTT 60.245 43.478 0.00 0.00 36.07 1.82
229 230 2.305635 GGGGGAACAAGGAATGCAATTT 59.694 45.455 0.00 0.00 36.07 1.82
230 231 1.908619 GGGGGAACAAGGAATGCAATT 59.091 47.619 0.00 0.00 40.93 2.32
231 232 1.571955 GGGGGAACAAGGAATGCAAT 58.428 50.000 0.00 0.00 0.00 3.56
232 233 0.897863 CGGGGGAACAAGGAATGCAA 60.898 55.000 0.00 0.00 0.00 4.08
233 234 1.304052 CGGGGGAACAAGGAATGCA 60.304 57.895 0.00 0.00 0.00 3.96
234 235 2.710902 GCGGGGGAACAAGGAATGC 61.711 63.158 0.00 0.00 0.00 3.56
235 236 0.897863 TTGCGGGGGAACAAGGAATG 60.898 55.000 0.00 0.00 0.00 2.67
236 237 0.178947 TTTGCGGGGGAACAAGGAAT 60.179 50.000 0.00 0.00 0.00 3.01
237 238 0.178947 ATTTGCGGGGGAACAAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
238 239 0.178947 AATTTGCGGGGGAACAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
239 240 0.684535 AAATTTGCGGGGGAACAAGG 59.315 50.000 0.00 0.00 0.00 3.61
240 241 2.542020 AAAATTTGCGGGGGAACAAG 57.458 45.000 0.00 0.00 0.00 3.16
260 261 4.651503 TGTAGGGAACAAGGAATGCAAAAA 59.348 37.500 0.00 0.00 34.29 1.94
261 262 4.219115 TGTAGGGAACAAGGAATGCAAAA 58.781 39.130 0.00 0.00 34.29 2.44
262 263 3.838565 TGTAGGGAACAAGGAATGCAAA 58.161 40.909 0.00 0.00 34.29 3.68
263 264 3.517296 TGTAGGGAACAAGGAATGCAA 57.483 42.857 0.00 0.00 34.29 4.08
264 265 3.517296 TTGTAGGGAACAAGGAATGCA 57.483 42.857 0.00 0.00 43.22 3.96
309 324 4.632153 AGAATGTCAGCCGTTATATGGAC 58.368 43.478 0.00 0.00 0.00 4.02
385 400 1.265568 CATGTTCATGCTTGCGCTTC 58.734 50.000 9.73 0.00 36.97 3.86
390 405 1.609932 CGTGACATGTTCATGCTTGC 58.390 50.000 12.00 1.89 36.32 4.01
397 412 3.410516 CGCCGCGTGACATGTTCA 61.411 61.111 4.92 0.00 0.00 3.18
415 430 2.421529 GGTGGGCGGTCAGATATTTTCT 60.422 50.000 0.00 0.00 33.90 2.52
528 571 1.762957 AGATGGAACCAACCGATCGAT 59.237 47.619 18.66 0.00 0.00 3.59
529 572 1.136305 GAGATGGAACCAACCGATCGA 59.864 52.381 18.66 0.00 0.00 3.59
530 573 1.137086 AGAGATGGAACCAACCGATCG 59.863 52.381 8.51 8.51 0.00 3.69
531 574 2.799917 CGAGAGATGGAACCAACCGATC 60.800 54.545 0.00 0.00 0.00 3.69
532 575 1.137086 CGAGAGATGGAACCAACCGAT 59.863 52.381 0.00 0.00 0.00 4.18
533 576 0.530744 CGAGAGATGGAACCAACCGA 59.469 55.000 0.00 0.00 0.00 4.69
534 577 1.084370 GCGAGAGATGGAACCAACCG 61.084 60.000 0.00 0.00 0.00 4.44
535 578 0.250513 AGCGAGAGATGGAACCAACC 59.749 55.000 0.00 0.00 0.00 3.77
623 669 1.422388 CGGATAGCACATCACCGATG 58.578 55.000 0.00 2.45 45.31 3.84
634 680 0.175760 GAGTTGACTGCCGGATAGCA 59.824 55.000 5.05 2.45 41.46 3.49
635 681 0.530870 GGAGTTGACTGCCGGATAGC 60.531 60.000 5.05 0.00 0.00 2.97
636 682 0.249073 CGGAGTTGACTGCCGGATAG 60.249 60.000 5.05 4.87 41.29 2.08
681 727 2.091541 GAATCAAAATCCAGGTGGCGA 58.908 47.619 0.00 0.00 34.44 5.54
722 768 3.168963 CGGTGTTAGTACGACATCACTG 58.831 50.000 13.65 9.17 0.00 3.66
724 770 1.916000 GCGGTGTTAGTACGACATCAC 59.084 52.381 13.65 8.18 0.00 3.06
791 839 0.320771 GCCCCGCCACATAGACATAG 60.321 60.000 0.00 0.00 0.00 2.23
792 840 0.762842 AGCCCCGCCACATAGACATA 60.763 55.000 0.00 0.00 0.00 2.29
793 841 2.044806 GAGCCCCGCCACATAGACAT 62.045 60.000 0.00 0.00 0.00 3.06
794 842 2.687200 AGCCCCGCCACATAGACA 60.687 61.111 0.00 0.00 0.00 3.41
795 843 2.109181 GAGCCCCGCCACATAGAC 59.891 66.667 0.00 0.00 0.00 2.59
796 844 3.161450 GGAGCCCCGCCACATAGA 61.161 66.667 0.00 0.00 0.00 1.98
797 845 2.343475 AATGGAGCCCCGCCACATAG 62.343 60.000 0.00 0.00 35.91 2.23
830 878 1.944177 AGTGGCTCTTTCAGGCTCTA 58.056 50.000 0.00 0.00 46.69 2.43
928 976 1.366366 CCGGAGTTGGTGAGAACGT 59.634 57.895 0.00 0.00 0.00 3.99
929 977 2.027625 GCCGGAGTTGGTGAGAACG 61.028 63.158 5.05 0.00 0.00 3.95
933 981 4.760047 CCGGCCGGAGTTGGTGAG 62.760 72.222 41.82 7.45 37.50 3.51
985 1033 2.094494 AGATGGCAGATACGCTAATCCG 60.094 50.000 0.00 0.00 0.00 4.18
1048 1121 2.315386 GCAGCAAAGCAAGCAAGCC 61.315 57.895 0.00 0.00 33.36 4.35
1108 1186 2.166459 ACATGCAGAGCAGTACGTACAT 59.834 45.455 26.55 12.60 43.65 2.29
1117 1202 2.277969 CTACCAAGACATGCAGAGCAG 58.722 52.381 0.00 0.00 43.65 4.24
1143 1236 1.373748 CACCCGTCCGGTACAACAG 60.374 63.158 0.00 0.00 46.14 3.16
1147 1240 2.203466 TCACACCCGTCCGGTACA 60.203 61.111 0.00 0.00 46.14 2.90
1538 1634 3.195002 TAGCATTGGTCGCTGCGC 61.195 61.111 18.65 12.39 43.17 6.09
1541 1637 2.813179 GCCGTAGCATTGGTCGCTG 61.813 63.158 0.00 0.00 40.73 5.18
1559 1655 3.023118 CCTGCATGCAGCTGATCG 58.977 61.111 37.11 21.20 44.15 3.69
1570 1666 3.677284 CTGTCCTGCTCGCCTGCAT 62.677 63.158 0.00 0.00 42.48 3.96
1581 1680 2.430921 GTCGTCACGCCTGTCCTG 60.431 66.667 0.00 0.00 0.00 3.86
1582 1681 4.039357 CGTCGTCACGCCTGTCCT 62.039 66.667 0.00 0.00 39.69 3.85
1745 1850 2.278206 CTCACGGCGTCCTCATCG 60.278 66.667 10.85 0.00 0.00 3.84
1782 1887 5.241728 TCTCCATTACGTGATCGATCAAGAT 59.758 40.000 36.98 25.62 38.33 2.40
1783 1888 4.578928 TCTCCATTACGTGATCGATCAAGA 59.421 41.667 36.98 25.97 38.33 3.02
1785 1890 4.911514 TCTCCATTACGTGATCGATCAA 57.088 40.909 28.83 14.51 38.75 2.57
1786 1891 5.705905 ACTATCTCCATTACGTGATCGATCA 59.294 40.000 23.99 23.99 40.62 2.92
1787 1892 6.024664 CACTATCTCCATTACGTGATCGATC 58.975 44.000 18.72 18.72 40.62 3.69
1788 1893 5.106118 CCACTATCTCCATTACGTGATCGAT 60.106 44.000 0.00 0.00 40.62 3.59
1869 1974 1.603455 CCACATCACCACCACCACC 60.603 63.158 0.00 0.00 0.00 4.61
1870 1975 1.603455 CCCACATCACCACCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
1894 1999 1.798234 TTCGTCCGTCCACATCACGT 61.798 55.000 0.00 0.00 35.39 4.49
1945 2051 0.459585 ACGTACAGGGCGCATTACAG 60.460 55.000 10.83 3.96 0.00 2.74
1980 2086 0.034756 TGTTGTGTCTCCACCATCGG 59.965 55.000 0.00 0.00 41.09 4.18
1981 2087 1.733912 CATGTTGTGTCTCCACCATCG 59.266 52.381 0.00 0.00 41.09 3.84
2008 2116 9.168553 AGGGAGTAGTAATCAGTAGAGTATGTA 57.831 37.037 0.00 0.00 0.00 2.29
2016 2124 8.749026 TTTACAGAGGGAGTAGTAATCAGTAG 57.251 38.462 0.00 0.00 0.00 2.57
2017 2125 8.554870 TCTTTACAGAGGGAGTAGTAATCAGTA 58.445 37.037 0.00 0.00 0.00 2.74
2018 2126 7.411808 TCTTTACAGAGGGAGTAGTAATCAGT 58.588 38.462 0.00 0.00 0.00 3.41
2019 2127 7.883391 TCTTTACAGAGGGAGTAGTAATCAG 57.117 40.000 0.00 0.00 0.00 2.90
2020 2128 8.660295 TTTCTTTACAGAGGGAGTAGTAATCA 57.340 34.615 0.00 0.00 0.00 2.57
2028 2136 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
2029 2137 8.646900 AGCTCTTATATTTCTTTACAGAGGGAG 58.353 37.037 0.00 0.00 0.00 4.30
2030 2138 8.554490 AGCTCTTATATTTCTTTACAGAGGGA 57.446 34.615 0.00 0.00 0.00 4.20
2031 2139 9.620259 AAAGCTCTTATATTTCTTTACAGAGGG 57.380 33.333 0.00 0.00 0.00 4.30
2047 2155 9.303537 GAACGTTTAGATCACTAAAGCTCTTAT 57.696 33.333 0.46 0.00 45.42 1.73
2048 2156 8.521176 AGAACGTTTAGATCACTAAAGCTCTTA 58.479 33.333 0.46 0.00 45.42 2.10
2049 2157 7.379750 AGAACGTTTAGATCACTAAAGCTCTT 58.620 34.615 0.46 0.00 45.42 2.85
2050 2158 6.926313 AGAACGTTTAGATCACTAAAGCTCT 58.074 36.000 0.46 0.00 45.42 4.09
2051 2159 7.583860 AAGAACGTTTAGATCACTAAAGCTC 57.416 36.000 0.46 0.00 45.42 4.09
2081 2189 8.153550 TGGGTATAACTACTTTCACCGTAAAAA 58.846 33.333 0.00 0.00 0.00 1.94
2082 2190 7.675062 TGGGTATAACTACTTTCACCGTAAAA 58.325 34.615 0.00 0.00 0.00 1.52
2083 2191 7.238486 TGGGTATAACTACTTTCACCGTAAA 57.762 36.000 0.00 0.00 0.00 2.01
2084 2192 6.849085 TGGGTATAACTACTTTCACCGTAA 57.151 37.500 0.00 0.00 0.00 3.18
2085 2193 7.123997 TCAATGGGTATAACTACTTTCACCGTA 59.876 37.037 0.00 0.00 0.00 4.02
2086 2194 5.945144 ATGGGTATAACTACTTTCACCGT 57.055 39.130 0.00 0.00 0.00 4.83
2087 2195 6.342906 TCAATGGGTATAACTACTTTCACCG 58.657 40.000 0.00 0.00 0.00 4.94
2127 2235 9.911788 GATCCTACCCAATATCATCATACAATT 57.088 33.333 0.00 0.00 0.00 2.32
2128 2236 9.289049 AGATCCTACCCAATATCATCATACAAT 57.711 33.333 0.00 0.00 0.00 2.71
2129 2237 8.685257 AGATCCTACCCAATATCATCATACAA 57.315 34.615 0.00 0.00 0.00 2.41
2130 2238 8.685257 AAGATCCTACCCAATATCATCATACA 57.315 34.615 0.00 0.00 0.00 2.29
2186 2294 9.113838 ACCAAATTGCAATAAACACATAACAAA 57.886 25.926 13.39 0.00 0.00 2.83
2187 2295 8.668510 ACCAAATTGCAATAAACACATAACAA 57.331 26.923 13.39 0.00 0.00 2.83
2188 2296 8.554528 CAACCAAATTGCAATAAACACATAACA 58.445 29.630 13.39 0.00 0.00 2.41
2189 2297 8.768955 TCAACCAAATTGCAATAAACACATAAC 58.231 29.630 13.39 0.00 38.29 1.89
2190 2298 8.893219 TCAACCAAATTGCAATAAACACATAA 57.107 26.923 13.39 0.00 38.29 1.90
2192 2300 7.982761 ATCAACCAAATTGCAATAAACACAT 57.017 28.000 13.39 0.00 38.29 3.21
2193 2301 9.499479 AATATCAACCAAATTGCAATAAACACA 57.501 25.926 13.39 0.00 38.29 3.72
2201 2309 9.429359 ACGAAATTAATATCAACCAAATTGCAA 57.571 25.926 0.00 0.00 38.29 4.08
2202 2310 8.867935 CACGAAATTAATATCAACCAAATTGCA 58.132 29.630 0.00 0.00 38.29 4.08
2203 2311 7.845622 GCACGAAATTAATATCAACCAAATTGC 59.154 33.333 0.00 0.00 38.29 3.56
2204 2312 9.086336 AGCACGAAATTAATATCAACCAAATTG 57.914 29.630 0.00 0.00 39.94 2.32
2208 2316 9.562583 GTTTAGCACGAAATTAATATCAACCAA 57.437 29.630 0.00 0.00 0.00 3.67
2209 2317 8.731605 TGTTTAGCACGAAATTAATATCAACCA 58.268 29.630 0.00 0.00 0.00 3.67
2210 2318 9.730420 ATGTTTAGCACGAAATTAATATCAACC 57.270 29.630 0.00 0.00 0.00 3.77
2215 2323 9.019764 GCAACATGTTTAGCACGAAATTAATAT 57.980 29.630 8.77 0.00 0.00 1.28
2216 2324 8.023706 TGCAACATGTTTAGCACGAAATTAATA 58.976 29.630 17.07 0.00 31.05 0.98
2217 2325 6.865726 TGCAACATGTTTAGCACGAAATTAAT 59.134 30.769 17.07 0.00 31.05 1.40
2218 2326 6.209361 TGCAACATGTTTAGCACGAAATTAA 58.791 32.000 17.07 0.00 31.05 1.40
2219 2327 5.763088 TGCAACATGTTTAGCACGAAATTA 58.237 33.333 17.07 0.00 31.05 1.40
2220 2328 4.615949 TGCAACATGTTTAGCACGAAATT 58.384 34.783 17.07 0.00 31.05 1.82
2221 2329 4.235939 TGCAACATGTTTAGCACGAAAT 57.764 36.364 17.07 0.00 31.05 2.17
2222 2330 3.699779 TGCAACATGTTTAGCACGAAA 57.300 38.095 17.07 0.00 31.05 3.46
2223 2331 3.563508 CATGCAACATGTTTAGCACGAA 58.436 40.909 21.74 0.47 40.14 3.85
2224 2332 2.668001 GCATGCAACATGTTTAGCACGA 60.668 45.455 21.74 4.27 40.14 4.35
2225 2333 1.650153 GCATGCAACATGTTTAGCACG 59.350 47.619 21.74 16.56 40.14 5.34
2226 2334 2.919229 GAGCATGCAACATGTTTAGCAC 59.081 45.455 21.74 12.58 40.14 4.40
2227 2335 2.557490 TGAGCATGCAACATGTTTAGCA 59.443 40.909 21.61 21.61 41.73 3.49
2228 2336 3.220507 TGAGCATGCAACATGTTTAGC 57.779 42.857 21.98 11.12 0.00 3.09
2229 2337 6.146510 ACAAATTGAGCATGCAACATGTTTAG 59.853 34.615 21.98 16.32 30.38 1.85
2230 2338 5.990386 ACAAATTGAGCATGCAACATGTTTA 59.010 32.000 21.98 1.19 30.38 2.01
2231 2339 4.817464 ACAAATTGAGCATGCAACATGTTT 59.183 33.333 21.98 17.70 30.38 2.83
2232 2340 4.382291 ACAAATTGAGCATGCAACATGTT 58.618 34.783 21.98 4.92 30.38 2.71
2233 2341 3.997762 ACAAATTGAGCATGCAACATGT 58.002 36.364 21.98 16.36 0.00 3.21
2234 2342 6.311690 TCAATACAAATTGAGCATGCAACATG 59.688 34.615 21.98 15.77 45.17 3.21
2235 2343 6.399743 TCAATACAAATTGAGCATGCAACAT 58.600 32.000 21.98 5.02 45.17 2.71
2236 2344 5.780984 TCAATACAAATTGAGCATGCAACA 58.219 33.333 21.98 16.48 45.17 3.33
2249 2357 9.631257 TGACTATCCAATCATGTCAATACAAAT 57.369 29.630 0.00 0.00 39.58 2.32
2250 2358 9.460019 TTGACTATCCAATCATGTCAATACAAA 57.540 29.630 0.00 0.00 41.02 2.83
2251 2359 9.112725 CTTGACTATCCAATCATGTCAATACAA 57.887 33.333 7.20 0.00 43.61 2.41
2252 2360 8.485392 TCTTGACTATCCAATCATGTCAATACA 58.515 33.333 7.20 0.00 43.61 2.29
2253 2361 8.893219 TCTTGACTATCCAATCATGTCAATAC 57.107 34.615 7.20 0.00 43.61 1.89
2254 2362 9.716531 GATCTTGACTATCCAATCATGTCAATA 57.283 33.333 7.20 1.99 43.61 1.90
2255 2363 8.215736 TGATCTTGACTATCCAATCATGTCAAT 58.784 33.333 7.20 0.00 43.61 2.57
2256 2364 7.567458 TGATCTTGACTATCCAATCATGTCAA 58.433 34.615 0.00 0.00 42.81 3.18
2257 2365 7.128234 TGATCTTGACTATCCAATCATGTCA 57.872 36.000 0.00 0.00 36.10 3.58
2258 2366 8.618702 ATTGATCTTGACTATCCAATCATGTC 57.381 34.615 0.00 0.00 0.00 3.06
2259 2367 8.847196 CAATTGATCTTGACTATCCAATCATGT 58.153 33.333 0.00 0.00 0.00 3.21
2260 2368 8.297426 CCAATTGATCTTGACTATCCAATCATG 58.703 37.037 7.12 0.00 0.00 3.07
2261 2369 8.003044 ACCAATTGATCTTGACTATCCAATCAT 58.997 33.333 7.12 0.00 0.00 2.45
2262 2370 7.348815 ACCAATTGATCTTGACTATCCAATCA 58.651 34.615 7.12 0.00 0.00 2.57
2263 2371 7.814264 ACCAATTGATCTTGACTATCCAATC 57.186 36.000 7.12 0.00 0.00 2.67
2264 2372 7.616935 ACAACCAATTGATCTTGACTATCCAAT 59.383 33.333 7.12 0.00 39.30 3.16
2265 2373 6.947733 ACAACCAATTGATCTTGACTATCCAA 59.052 34.615 7.12 0.00 39.30 3.53
2266 2374 6.484288 ACAACCAATTGATCTTGACTATCCA 58.516 36.000 7.12 0.00 39.30 3.41
2267 2375 6.038714 GGACAACCAATTGATCTTGACTATCC 59.961 42.308 7.12 4.96 39.30 2.59
2268 2376 6.038714 GGGACAACCAATTGATCTTGACTATC 59.961 42.308 7.12 0.00 39.30 2.08
2269 2377 5.888161 GGGACAACCAATTGATCTTGACTAT 59.112 40.000 7.12 0.00 39.30 2.12
2270 2378 5.014123 AGGGACAACCAATTGATCTTGACTA 59.986 40.000 7.12 0.00 43.89 2.59
2271 2379 4.082125 GGGACAACCAATTGATCTTGACT 58.918 43.478 7.12 0.00 39.30 3.41
2272 2380 4.082125 AGGGACAACCAATTGATCTTGAC 58.918 43.478 7.12 5.84 43.89 3.18
2273 2381 4.387026 AGGGACAACCAATTGATCTTGA 57.613 40.909 7.12 0.00 43.89 3.02
2274 2382 5.232463 CAAAGGGACAACCAATTGATCTTG 58.768 41.667 7.12 7.83 43.89 3.02
2275 2383 4.284234 CCAAAGGGACAACCAATTGATCTT 59.716 41.667 7.12 0.00 43.89 2.40
2276 2384 3.834231 CCAAAGGGACAACCAATTGATCT 59.166 43.478 7.12 0.00 43.89 2.75
2277 2385 3.831911 TCCAAAGGGACAACCAATTGATC 59.168 43.478 7.12 0.00 43.89 2.92
2278 2386 3.855668 TCCAAAGGGACAACCAATTGAT 58.144 40.909 7.12 0.00 43.89 2.57
2279 2387 3.320610 TCCAAAGGGACAACCAATTGA 57.679 42.857 7.12 0.00 43.89 2.57
2380 2488 9.965824 GGCATTTGTGCTAGTATATTACAAATT 57.034 29.630 10.01 0.00 41.17 1.82
2381 2489 8.576442 GGGCATTTGTGCTAGTATATTACAAAT 58.424 33.333 0.00 0.00 42.49 2.32
2382 2490 7.254966 CGGGCATTTGTGCTAGTATATTACAAA 60.255 37.037 0.00 0.00 39.16 2.83
2383 2491 6.203915 CGGGCATTTGTGCTAGTATATTACAA 59.796 38.462 0.07 0.00 34.73 2.41
2384 2492 5.699001 CGGGCATTTGTGCTAGTATATTACA 59.301 40.000 0.07 0.00 34.73 2.41
2385 2493 5.699458 ACGGGCATTTGTGCTAGTATATTAC 59.301 40.000 0.07 0.00 34.73 1.89
2386 2494 5.699001 CACGGGCATTTGTGCTAGTATATTA 59.301 40.000 0.07 0.00 34.73 0.98
2387 2495 4.515191 CACGGGCATTTGTGCTAGTATATT 59.485 41.667 0.07 0.00 34.73 1.28
2388 2496 4.065088 CACGGGCATTTGTGCTAGTATAT 58.935 43.478 0.07 0.00 34.73 0.86
2389 2497 3.462982 CACGGGCATTTGTGCTAGTATA 58.537 45.455 0.07 0.00 34.73 1.47
2390 2498 2.288666 CACGGGCATTTGTGCTAGTAT 58.711 47.619 0.07 0.00 34.73 2.12
2463 2572 3.737850 TGGTGCAATTGGTTGGATTTTC 58.262 40.909 7.72 0.00 37.99 2.29
2538 2653 2.095969 TCACGAAAATAAGGCAACAGCG 60.096 45.455 0.00 0.00 41.41 5.18
2540 2655 6.422776 ACTATCACGAAAATAAGGCAACAG 57.577 37.500 0.00 0.00 41.41 3.16
2622 2737 1.905637 GGAGGTTTGTCCCAACGAAT 58.094 50.000 0.00 0.00 36.75 3.34
2776 2891 5.859495 TGTGTGACATAATCCCGCAATATA 58.141 37.500 0.00 0.00 0.00 0.86
2844 2959 1.302033 CTTTCTCACGCTGGCTGGT 60.302 57.895 0.00 0.00 0.00 4.00
2868 2989 4.467082 AGAGCAGAGAGAATGAGACAACAT 59.533 41.667 0.00 0.00 0.00 2.71
2887 3008 0.387565 GAGACGGAGGGATGAAGAGC 59.612 60.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.