Multiple sequence alignment - TraesCS1A01G187800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G187800 chr1A 100.000 5249 0 0 1 5249 338837388 338832140 0.000000e+00 9694.0
1 TraesCS1A01G187800 chr1D 87.682 1859 95 42 402 2233 261221530 261223281 0.000000e+00 2041.0
2 TraesCS1A01G187800 chr1D 89.114 1185 93 18 3172 4335 261224094 261225263 0.000000e+00 1441.0
3 TraesCS1A01G187800 chr1D 85.366 615 32 23 2227 2826 261223305 261223876 7.570000e-163 584.0
4 TraesCS1A01G187800 chr1D 82.895 228 17 8 1 214 261221092 261221311 8.980000e-43 185.0
5 TraesCS1A01G187800 chr1B 88.323 1747 110 45 508 2222 350795664 350793980 0.000000e+00 2010.0
6 TraesCS1A01G187800 chr1B 86.651 1251 77 28 3175 4365 350793121 350791901 0.000000e+00 1303.0
7 TraesCS1A01G187800 chr1B 94.017 819 35 7 4443 5249 443566145 443565329 0.000000e+00 1229.0
8 TraesCS1A01G187800 chr1B 85.377 636 27 20 2227 2826 350793945 350793340 2.710000e-167 599.0
9 TraesCS1A01G187800 chr1B 88.806 134 8 5 400 532 350795800 350795673 1.960000e-34 158.0
10 TraesCS1A01G187800 chr4B 94.131 852 33 7 4412 5249 78660863 78660015 0.000000e+00 1280.0
11 TraesCS1A01G187800 chr6A 93.325 839 40 5 4422 5246 427428695 427429531 0.000000e+00 1225.0
12 TraesCS1A01G187800 chr6A 91.879 862 37 10 4401 5249 585420371 585421212 0.000000e+00 1173.0
13 TraesCS1A01G187800 chr6A 91.045 67 6 0 4412 4478 102132289 102132223 2.010000e-14 91.6
14 TraesCS1A01G187800 chr3B 91.773 863 41 9 4412 5249 154929620 154928763 0.000000e+00 1173.0
15 TraesCS1A01G187800 chr3B 91.570 866 41 13 4412 5249 40927715 40926854 0.000000e+00 1166.0
16 TraesCS1A01G187800 chr3B 92.593 54 3 1 4412 4464 59329118 59329171 5.640000e-10 76.8
17 TraesCS1A01G187800 chr5D 90.494 789 53 9 4478 5246 518872397 518871611 0.000000e+00 1022.0
18 TraesCS1A01G187800 chr7B 96.637 565 17 2 4682 5246 659860228 659860790 0.000000e+00 937.0
19 TraesCS1A01G187800 chr5B 88.041 786 73 15 4478 5249 187855202 187854424 0.000000e+00 911.0
20 TraesCS1A01G187800 chr5B 92.683 41 2 1 4422 4461 710178900 710178860 2.040000e-04 58.4
21 TraesCS1A01G187800 chr5A 86.058 789 80 19 4477 5243 617326566 617325786 0.000000e+00 821.0
22 TraesCS1A01G187800 chr7D 87.626 695 72 10 4565 5249 423550587 423549897 0.000000e+00 795.0
23 TraesCS1A01G187800 chr2A 93.548 62 4 0 4412 4473 651978768 651978829 5.600000e-15 93.5
24 TraesCS1A01G187800 chr2B 95.745 47 2 0 4412 4458 774709638 774709684 5.640000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G187800 chr1A 338832140 338837388 5248 True 9694.00 9694 100.00000 1 5249 1 chr1A.!!$R1 5248
1 TraesCS1A01G187800 chr1D 261221092 261225263 4171 False 1062.75 2041 86.26425 1 4335 4 chr1D.!!$F1 4334
2 TraesCS1A01G187800 chr1B 443565329 443566145 816 True 1229.00 1229 94.01700 4443 5249 1 chr1B.!!$R1 806
3 TraesCS1A01G187800 chr1B 350791901 350795800 3899 True 1017.50 2010 87.28925 400 4365 4 chr1B.!!$R2 3965
4 TraesCS1A01G187800 chr4B 78660015 78660863 848 True 1280.00 1280 94.13100 4412 5249 1 chr4B.!!$R1 837
5 TraesCS1A01G187800 chr6A 427428695 427429531 836 False 1225.00 1225 93.32500 4422 5246 1 chr6A.!!$F1 824
6 TraesCS1A01G187800 chr6A 585420371 585421212 841 False 1173.00 1173 91.87900 4401 5249 1 chr6A.!!$F2 848
7 TraesCS1A01G187800 chr3B 154928763 154929620 857 True 1173.00 1173 91.77300 4412 5249 1 chr3B.!!$R2 837
8 TraesCS1A01G187800 chr3B 40926854 40927715 861 True 1166.00 1166 91.57000 4412 5249 1 chr3B.!!$R1 837
9 TraesCS1A01G187800 chr5D 518871611 518872397 786 True 1022.00 1022 90.49400 4478 5246 1 chr5D.!!$R1 768
10 TraesCS1A01G187800 chr7B 659860228 659860790 562 False 937.00 937 96.63700 4682 5246 1 chr7B.!!$F1 564
11 TraesCS1A01G187800 chr5B 187854424 187855202 778 True 911.00 911 88.04100 4478 5249 1 chr5B.!!$R1 771
12 TraesCS1A01G187800 chr5A 617325786 617326566 780 True 821.00 821 86.05800 4477 5243 1 chr5A.!!$R1 766
13 TraesCS1A01G187800 chr7D 423549897 423550587 690 True 795.00 795 87.62600 4565 5249 1 chr7D.!!$R1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 382 0.034616 CTGATCCGGAATCCTCAGCC 59.965 60.0 17.51 0.0 33.01 4.85 F
477 569 0.108472 CCACAGATCGCTCAGCTTCA 60.108 55.0 0.00 0.0 0.00 3.02 F
1905 2085 0.039798 CGTCGACGGAAAGGAACTGA 60.040 55.0 29.70 0.0 35.06 3.41 F
2333 2573 0.096454 GGATTTGAACGTACTGCCGC 59.904 55.0 0.00 0.0 0.00 6.53 F
2833 3110 0.109132 GCCCACATGCAAGCAAGTAC 60.109 55.0 2.37 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1762 0.107703 TGGCAATCCAGAGCTTACGG 60.108 55.0 0.00 0.0 37.47 4.02 R
2132 2334 0.109597 CAATCGCAACTCCAAGGCAC 60.110 55.0 0.00 0.0 0.00 5.01 R
2878 3158 0.098025 CGCGTTGCCGATAAACCATT 59.902 50.0 0.00 0.0 35.63 3.16 R
4010 4357 0.041663 CGCGGCTTCGAAGTTTTTCA 60.042 50.0 25.24 0.0 35.61 2.69 R
4366 4721 0.032540 GTGCCTGTTTTCAAGGCCAG 59.967 55.0 5.01 0.0 40.67 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.833787 TTGACCCCGTACAAGAGGCC 61.834 60.000 0.00 0.00 0.00 5.19
48 49 0.629596 ACTGACTGGGGAGGTATCGA 59.370 55.000 0.00 0.00 0.00 3.59
49 50 1.323412 CTGACTGGGGAGGTATCGAG 58.677 60.000 0.00 0.00 0.00 4.04
50 51 0.924090 TGACTGGGGAGGTATCGAGA 59.076 55.000 0.00 0.00 0.00 4.04
51 52 1.499438 TGACTGGGGAGGTATCGAGAT 59.501 52.381 0.00 0.00 0.00 2.75
52 53 2.091278 TGACTGGGGAGGTATCGAGATT 60.091 50.000 0.00 0.00 0.00 2.40
53 54 2.559231 GACTGGGGAGGTATCGAGATTC 59.441 54.545 0.00 0.00 0.00 2.52
54 55 1.542030 CTGGGGAGGTATCGAGATTCG 59.458 57.143 0.00 0.00 42.10 3.34
127 128 2.125350 GCTTCCCTGCTGGTCTCG 60.125 66.667 9.00 0.00 34.77 4.04
140 152 1.131218 GTCTCGGCCGTAAAAACGC 59.869 57.895 27.15 4.34 0.00 4.84
141 153 2.028733 TCTCGGCCGTAAAAACGCC 61.029 57.895 27.15 0.00 0.00 5.68
142 154 3.357276 CTCGGCCGTAAAAACGCCG 62.357 63.158 27.15 20.01 46.12 6.46
143 155 3.413023 CGGCCGTAAAAACGCCGA 61.413 61.111 19.50 0.00 46.95 5.54
150 165 2.518949 CGTAAAAACGCCGAGCTACTA 58.481 47.619 0.00 0.00 0.00 1.82
157 172 2.163509 ACGCCGAGCTACTATCATCAT 58.836 47.619 0.00 0.00 0.00 2.45
158 173 2.558795 ACGCCGAGCTACTATCATCATT 59.441 45.455 0.00 0.00 0.00 2.57
162 177 5.392057 CGCCGAGCTACTATCATCATTAAGA 60.392 44.000 0.00 0.00 0.00 2.10
176 191 5.745312 TCATTAAGATGACAGACACACCT 57.255 39.130 0.00 0.00 37.37 4.00
178 193 7.423844 TCATTAAGATGACAGACACACCTAT 57.576 36.000 0.00 0.00 37.37 2.57
179 194 7.492524 TCATTAAGATGACAGACACACCTATC 58.507 38.462 0.00 0.00 37.37 2.08
180 195 4.377839 AAGATGACAGACACACCTATCG 57.622 45.455 0.00 0.00 0.00 2.92
181 196 3.621558 AGATGACAGACACACCTATCGA 58.378 45.455 0.00 0.00 0.00 3.59
183 198 1.816835 TGACAGACACACCTATCGACC 59.183 52.381 0.00 0.00 0.00 4.79
185 200 0.100682 CAGACACACCTATCGACCGG 59.899 60.000 0.00 0.00 0.00 5.28
186 201 1.226888 GACACACCTATCGACCGGC 60.227 63.158 0.00 0.00 0.00 6.13
188 203 1.065928 CACACCTATCGACCGGCTC 59.934 63.158 0.00 0.00 0.00 4.70
216 231 5.674933 GGCTAACAGACAAATGCCTATAC 57.325 43.478 0.00 0.00 37.58 1.47
217 232 5.368989 GGCTAACAGACAAATGCCTATACT 58.631 41.667 0.00 0.00 37.58 2.12
218 233 5.237344 GGCTAACAGACAAATGCCTATACTG 59.763 44.000 0.00 0.00 37.58 2.74
219 234 5.817816 GCTAACAGACAAATGCCTATACTGT 59.182 40.000 0.00 0.00 38.48 3.55
220 235 6.316390 GCTAACAGACAAATGCCTATACTGTT 59.684 38.462 0.00 0.00 44.97 3.16
221 236 7.148239 GCTAACAGACAAATGCCTATACTGTTT 60.148 37.037 0.00 0.00 41.95 2.83
222 237 7.524717 AACAGACAAATGCCTATACTGTTTT 57.475 32.000 0.00 0.00 41.95 2.43
223 238 7.524717 ACAGACAAATGCCTATACTGTTTTT 57.475 32.000 0.00 0.00 34.21 1.94
224 239 7.593825 ACAGACAAATGCCTATACTGTTTTTC 58.406 34.615 0.00 0.00 34.21 2.29
225 240 7.448469 ACAGACAAATGCCTATACTGTTTTTCT 59.552 33.333 0.00 0.00 34.21 2.52
226 241 8.299570 CAGACAAATGCCTATACTGTTTTTCTT 58.700 33.333 0.00 0.00 0.00 2.52
227 242 8.515414 AGACAAATGCCTATACTGTTTTTCTTC 58.485 33.333 0.00 0.00 0.00 2.87
228 243 8.409358 ACAAATGCCTATACTGTTTTTCTTCT 57.591 30.769 0.00 0.00 0.00 2.85
229 244 8.515414 ACAAATGCCTATACTGTTTTTCTTCTC 58.485 33.333 0.00 0.00 0.00 2.87
230 245 8.734386 CAAATGCCTATACTGTTTTTCTTCTCT 58.266 33.333 0.00 0.00 0.00 3.10
231 246 8.499403 AATGCCTATACTGTTTTTCTTCTCTC 57.501 34.615 0.00 0.00 0.00 3.20
232 247 7.246171 TGCCTATACTGTTTTTCTTCTCTCT 57.754 36.000 0.00 0.00 0.00 3.10
233 248 7.680730 TGCCTATACTGTTTTTCTTCTCTCTT 58.319 34.615 0.00 0.00 0.00 2.85
234 249 7.819900 TGCCTATACTGTTTTTCTTCTCTCTTC 59.180 37.037 0.00 0.00 0.00 2.87
235 250 8.038351 GCCTATACTGTTTTTCTTCTCTCTTCT 58.962 37.037 0.00 0.00 0.00 2.85
236 251 9.364989 CCTATACTGTTTTTCTTCTCTCTTCTG 57.635 37.037 0.00 0.00 0.00 3.02
237 252 7.665561 ATACTGTTTTTCTTCTCTCTTCTGC 57.334 36.000 0.00 0.00 0.00 4.26
238 253 4.509600 ACTGTTTTTCTTCTCTCTTCTGCG 59.490 41.667 0.00 0.00 0.00 5.18
239 254 3.248602 TGTTTTTCTTCTCTCTTCTGCGC 59.751 43.478 0.00 0.00 0.00 6.09
240 255 3.393089 TTTTCTTCTCTCTTCTGCGCT 57.607 42.857 9.73 0.00 0.00 5.92
241 256 2.645730 TTCTTCTCTCTTCTGCGCTC 57.354 50.000 9.73 0.00 0.00 5.03
242 257 1.539157 TCTTCTCTCTTCTGCGCTCA 58.461 50.000 9.73 0.00 0.00 4.26
243 258 2.098614 TCTTCTCTCTTCTGCGCTCAT 58.901 47.619 9.73 0.00 0.00 2.90
244 259 2.159268 TCTTCTCTCTTCTGCGCTCATG 60.159 50.000 9.73 0.00 0.00 3.07
245 260 0.179116 TCTCTCTTCTGCGCTCATGC 60.179 55.000 9.73 0.00 0.00 4.06
246 261 1.152989 CTCTCTTCTGCGCTCATGCC 61.153 60.000 9.73 0.00 35.36 4.40
247 262 1.153409 CTCTTCTGCGCTCATGCCT 60.153 57.895 9.73 0.00 35.36 4.75
248 263 0.103755 CTCTTCTGCGCTCATGCCTA 59.896 55.000 9.73 0.00 35.36 3.93
252 267 1.142531 CTGCGCTCATGCCTAGTGA 59.857 57.895 9.73 0.00 35.36 3.41
262 277 5.294734 TCATGCCTAGTGATATTTCTGCA 57.705 39.130 0.00 0.00 0.00 4.41
292 337 4.130281 GACGTCGCCGGCTTTTCG 62.130 66.667 26.68 23.19 39.71 3.46
309 354 2.044946 GGGGCTGAAATCACCGCT 60.045 61.111 9.96 0.00 33.83 5.52
310 355 2.409870 GGGGCTGAAATCACCGCTG 61.410 63.158 9.96 0.00 33.83 5.18
311 356 1.377202 GGGCTGAAATCACCGCTGA 60.377 57.895 0.00 0.00 0.00 4.26
312 357 0.749454 GGGCTGAAATCACCGCTGAT 60.749 55.000 0.00 0.00 38.94 2.90
313 358 0.659957 GGCTGAAATCACCGCTGATC 59.340 55.000 0.00 0.00 35.96 2.92
314 359 0.659957 GCTGAAATCACCGCTGATCC 59.340 55.000 0.00 0.00 35.96 3.36
315 360 0.933097 CTGAAATCACCGCTGATCCG 59.067 55.000 0.00 0.00 35.96 4.18
327 382 0.034616 CTGATCCGGAATCCTCAGCC 59.965 60.000 17.51 0.00 33.01 4.85
330 385 2.049627 ATCCGGAATCCTCAGCCTGC 62.050 60.000 9.01 0.00 0.00 4.85
334 389 1.092345 GGAATCCTCAGCCTGCGAAC 61.092 60.000 0.00 0.00 0.00 3.95
335 390 1.424493 GAATCCTCAGCCTGCGAACG 61.424 60.000 0.00 0.00 0.00 3.95
338 393 2.383527 CCTCAGCCTGCGAACGAAC 61.384 63.158 0.00 0.00 0.00 3.95
343 398 2.383527 GCCTGCGAACGAACTCAGG 61.384 63.158 14.56 14.56 46.63 3.86
345 400 1.009389 CCTGCGAACGAACTCAGGAC 61.009 60.000 13.98 0.00 46.80 3.85
349 405 0.237761 CGAACGAACTCAGGACGACT 59.762 55.000 0.00 0.00 0.00 4.18
366 422 2.029244 CGACTGAATGTATCAACCGTGC 59.971 50.000 0.00 0.00 37.67 5.34
369 425 3.374988 ACTGAATGTATCAACCGTGCATG 59.625 43.478 0.00 0.00 37.67 4.06
372 428 4.142708 TGAATGTATCAACCGTGCATGAAC 60.143 41.667 7.72 0.00 34.30 3.18
376 432 0.249699 TCAACCGTGCATGAACTCGT 60.250 50.000 7.72 0.00 0.00 4.18
385 441 1.081892 CATGAACTCGTTGGGCTCTG 58.918 55.000 0.00 0.00 0.00 3.35
386 442 0.687354 ATGAACTCGTTGGGCTCTGT 59.313 50.000 0.00 0.00 0.00 3.41
395 451 0.250727 TTGGGCTCTGTTGGCTACAC 60.251 55.000 0.00 0.00 32.10 2.90
398 454 0.955919 GGCTCTGTTGGCTACACACC 60.956 60.000 0.00 0.00 32.10 4.16
399 455 1.291877 GCTCTGTTGGCTACACACCG 61.292 60.000 0.00 0.00 32.10 4.94
401 457 0.466543 TCTGTTGGCTACACACCGTT 59.533 50.000 0.00 0.00 32.10 4.44
422 513 0.453950 CCGTCGAGTACAAGACACGG 60.454 60.000 17.12 12.37 41.81 4.94
447 538 3.117512 CAGCCACCCCCAATTATAGAAGT 60.118 47.826 0.00 0.00 0.00 3.01
460 552 1.788229 TAGAAGTGGATGATCGGCCA 58.212 50.000 2.24 2.46 0.00 5.36
466 558 0.394192 TGGATGATCGGCCACAGATC 59.606 55.000 2.24 7.91 43.45 2.75
468 560 1.287730 GATGATCGGCCACAGATCGC 61.288 60.000 2.24 0.07 45.44 4.58
477 569 0.108472 CCACAGATCGCTCAGCTTCA 60.108 55.000 0.00 0.00 0.00 3.02
478 570 0.997932 CACAGATCGCTCAGCTTCAC 59.002 55.000 0.00 0.00 0.00 3.18
479 571 0.457509 ACAGATCGCTCAGCTTCACG 60.458 55.000 0.00 0.00 0.00 4.35
480 572 0.457509 CAGATCGCTCAGCTTCACGT 60.458 55.000 0.00 0.00 0.00 4.49
481 573 1.095600 AGATCGCTCAGCTTCACGTA 58.904 50.000 0.00 0.00 0.00 3.57
482 574 1.192793 GATCGCTCAGCTTCACGTAC 58.807 55.000 0.00 0.00 0.00 3.67
483 575 0.179134 ATCGCTCAGCTTCACGTACC 60.179 55.000 0.00 0.00 0.00 3.34
484 576 1.080772 CGCTCAGCTTCACGTACCA 60.081 57.895 0.00 0.00 0.00 3.25
520 648 1.134098 GCTAGCTAGCCATGGACCAAA 60.134 52.381 31.67 0.00 43.39 3.28
521 649 2.843701 CTAGCTAGCCATGGACCAAAG 58.156 52.381 18.40 5.42 0.00 2.77
522 650 0.394899 AGCTAGCCATGGACCAAAGC 60.395 55.000 18.40 15.11 0.00 3.51
538 666 5.377478 ACCAAAGCCATAATTCCTACTAGC 58.623 41.667 0.00 0.00 0.00 3.42
633 762 2.270352 TGTAACCAAAGCCTCCACAG 57.730 50.000 0.00 0.00 0.00 3.66
643 772 1.979155 CCTCCACAGCGGTCTCTGA 60.979 63.158 0.00 0.00 37.51 3.27
644 773 1.214062 CTCCACAGCGGTCTCTGAC 59.786 63.158 0.00 0.00 37.51 3.51
657 786 1.889530 CTCTGACCTGAACCCGACCC 61.890 65.000 0.00 0.00 0.00 4.46
714 844 4.077188 GCTGCACGCAGTTCCGTC 62.077 66.667 19.56 0.00 41.61 4.79
715 845 2.356313 CTGCACGCAGTTCCGTCT 60.356 61.111 10.94 0.00 41.61 4.18
716 846 1.956170 CTGCACGCAGTTCCGTCTT 60.956 57.895 10.94 0.00 41.61 3.01
717 847 1.891060 CTGCACGCAGTTCCGTCTTC 61.891 60.000 10.94 0.00 41.61 2.87
737 867 1.103987 TCTTCTCCATCGCCTCCTCG 61.104 60.000 0.00 0.00 0.00 4.63
738 868 2.081425 CTTCTCCATCGCCTCCTCGG 62.081 65.000 0.00 0.00 0.00 4.63
756 886 2.584418 CCACCTGCTCTCGCATCG 60.584 66.667 0.00 0.00 46.74 3.84
799 929 1.852280 GTTTTCCTTTTCGTGCACAGC 59.148 47.619 18.64 0.00 0.00 4.40
867 997 0.811616 CCAGGCAAGTACGGATCAGC 60.812 60.000 0.00 0.00 0.00 4.26
870 1000 1.883084 GCAAGTACGGATCAGCGGG 60.883 63.158 0.00 0.00 0.00 6.13
965 1099 2.206515 CTCGCTTCACTCTGCTCGGT 62.207 60.000 0.00 0.00 0.00 4.69
966 1100 2.091112 CGCTTCACTCTGCTCGGTG 61.091 63.158 0.00 0.00 35.06 4.94
1159 1294 4.681978 ACAACGCCCTCCACGAGC 62.682 66.667 0.00 0.00 0.00 5.03
1288 1423 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1289 1424 0.930726 GAGGAGGAGGAGGAGGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
1297 1432 2.607750 AGGAGGAGAAGGCGGCAA 60.608 61.111 13.08 0.00 0.00 4.52
1380 1524 3.535691 CGAGAGGAAATCCGAGTCG 57.464 57.895 5.29 5.29 42.08 4.18
1398 1542 1.075425 CGGACTTCTCTGCAAGCTCG 61.075 60.000 0.00 0.00 0.00 5.03
1463 1607 4.884744 CACGAGAGAAGAAGATAAGGAGGA 59.115 45.833 0.00 0.00 0.00 3.71
1464 1608 5.008613 CACGAGAGAAGAAGATAAGGAGGAG 59.991 48.000 0.00 0.00 0.00 3.69
1465 1609 4.518970 CGAGAGAAGAAGATAAGGAGGAGG 59.481 50.000 0.00 0.00 0.00 4.30
1469 1613 5.460416 AGAAGAAGATAAGGAGGAGGTACC 58.540 45.833 2.73 2.73 39.35 3.34
1513 1661 6.055588 TCTTGCAGTAACTAGGATTAATGGC 58.944 40.000 0.00 0.00 32.17 4.40
1537 1685 3.000022 GTCGTTAATTCAGTTAGGAGCGC 60.000 47.826 0.00 0.00 0.00 5.92
1538 1686 2.284417 CGTTAATTCAGTTAGGAGCGCC 59.716 50.000 2.29 0.00 0.00 6.53
1539 1687 2.218953 TAATTCAGTTAGGAGCGCCG 57.781 50.000 2.29 0.00 39.96 6.46
1540 1688 0.462047 AATTCAGTTAGGAGCGCCGG 60.462 55.000 2.29 0.00 39.96 6.13
1541 1689 2.925162 ATTCAGTTAGGAGCGCCGGC 62.925 60.000 19.07 19.07 39.96 6.13
1544 1692 4.893601 GTTAGGAGCGCCGGCCTC 62.894 72.222 27.35 27.35 41.24 4.70
1595 1760 5.051907 CGTTGCATTATTCACGTAGGAGTAC 60.052 44.000 0.00 0.00 0.00 2.73
1596 1761 5.847111 TGCATTATTCACGTAGGAGTACT 57.153 39.130 0.00 0.00 0.00 2.73
1597 1762 5.828747 TGCATTATTCACGTAGGAGTACTC 58.171 41.667 14.87 14.87 0.00 2.59
1634 1799 3.622060 ATGAAACGGGAGCCCCACG 62.622 63.158 10.47 4.05 45.83 4.94
1710 1882 2.375110 CGCCATTAATTGCTACGCTTG 58.625 47.619 9.59 0.00 0.00 4.01
1801 1973 3.315949 GGTACGTGGTCCTGGGCA 61.316 66.667 0.00 0.00 0.00 5.36
1809 1981 2.269241 GTCCTGGGCAGTGCTACC 59.731 66.667 16.11 9.35 0.00 3.18
1827 1999 3.955650 ACCGCACTATTTGTACAGAGT 57.044 42.857 0.00 0.00 0.00 3.24
1828 2000 5.449588 GCTACCGCACTATTTGTACAGAGTA 60.450 44.000 0.00 0.00 35.78 2.59
1829 2001 4.741342 ACCGCACTATTTGTACAGAGTAC 58.259 43.478 0.00 0.51 0.00 2.73
1830 2002 4.461781 ACCGCACTATTTGTACAGAGTACT 59.538 41.667 0.00 0.00 0.00 2.73
1831 2003 5.649395 ACCGCACTATTTGTACAGAGTACTA 59.351 40.000 0.00 0.00 0.00 1.82
1832 2004 5.970023 CCGCACTATTTGTACAGAGTACTAC 59.030 44.000 0.00 0.00 0.00 2.73
1868 2040 0.803740 AGTCGTGTAGCTTCTCCGAC 59.196 55.000 20.19 20.19 45.99 4.79
1905 2085 0.039798 CGTCGACGGAAAGGAACTGA 60.040 55.000 29.70 0.00 35.06 3.41
1913 2093 3.057946 ACGGAAAGGAACTGACGTAGTAC 60.058 47.826 0.00 0.00 39.25 2.73
1944 2124 3.036091 TCCACTGTTATACCCTAGCCAC 58.964 50.000 0.00 0.00 0.00 5.01
1977 2157 2.487762 GCCTCGGATGTTTGACATTTCA 59.512 45.455 0.00 0.00 39.27 2.69
1997 2177 6.942532 TTCACAGACTGCATTCTTTAGTTT 57.057 33.333 3.42 0.00 0.00 2.66
2005 2185 5.122396 ACTGCATTCTTTAGTTTAGAAGCGG 59.878 40.000 0.00 0.00 37.71 5.52
2007 2187 5.880332 TGCATTCTTTAGTTTAGAAGCGGAT 59.120 36.000 0.00 0.00 35.28 4.18
2025 2215 3.002656 CGGATCGTGGTACATAACGTAGT 59.997 47.826 12.72 0.00 44.71 2.73
2026 2216 4.211164 CGGATCGTGGTACATAACGTAGTA 59.789 45.833 12.72 0.00 41.35 1.82
2027 2217 5.444122 GGATCGTGGTACATAACGTAGTAC 58.556 45.833 14.13 14.13 41.35 2.73
2044 2234 9.971922 AACGTAGTACTACACTTCTTTATTTGT 57.028 29.630 28.03 12.91 45.00 2.83
2045 2235 9.617975 ACGTAGTACTACACTTCTTTATTTGTC 57.382 33.333 28.03 0.39 41.94 3.18
2132 2334 0.588233 GCTGCGATGAGATTTGTGCG 60.588 55.000 0.00 0.00 0.00 5.34
2151 2353 0.109597 GTGCCTTGGAGTTGCGATTG 60.110 55.000 0.00 0.00 0.00 2.67
2177 2379 2.738135 CTTTTGGTAGCAAAACCGGTG 58.262 47.619 24.87 13.54 42.91 4.94
2178 2380 1.765230 TTTGGTAGCAAAACCGGTGT 58.235 45.000 17.34 0.00 42.91 4.16
2179 2381 1.025812 TTGGTAGCAAAACCGGTGTG 58.974 50.000 8.52 11.44 42.91 3.82
2193 2395 1.966451 GTGTGGTACTGGTGGCAGC 60.966 63.158 10.30 10.30 0.00 5.25
2195 2397 3.238497 TGGTACTGGTGGCAGCGT 61.238 61.111 12.58 14.53 0.00 5.07
2196 2398 2.434359 GGTACTGGTGGCAGCGTC 60.434 66.667 12.58 7.20 0.00 5.19
2200 2402 4.335647 CTGGTGGCAGCGTCCCTT 62.336 66.667 12.58 0.00 0.00 3.95
2211 2413 1.416401 AGCGTCCCTTTCTCAAGACAA 59.584 47.619 0.00 0.00 30.57 3.18
2214 2416 3.548214 GCGTCCCTTTCTCAAGACAAAAC 60.548 47.826 0.00 0.00 30.57 2.43
2217 2419 5.560953 CGTCCCTTTCTCAAGACAAAACATC 60.561 44.000 0.00 0.00 30.57 3.06
2223 2425 7.433425 CCTTTCTCAAGACAAAACATCTTTCAC 59.567 37.037 0.00 0.00 34.08 3.18
2243 2475 1.463444 CCGGTTAGGTTTCTTTCAGCG 59.537 52.381 0.00 0.00 34.51 5.18
2287 2519 1.344438 CATCAGCCTCGGCCATAAGTA 59.656 52.381 2.24 0.00 43.17 2.24
2288 2520 0.750850 TCAGCCTCGGCCATAAGTAC 59.249 55.000 2.24 0.00 43.17 2.73
2289 2521 0.753262 CAGCCTCGGCCATAAGTACT 59.247 55.000 2.24 0.00 43.17 2.73
2309 2541 3.184736 CCATTAGGTTGGTTCCGGG 57.815 57.895 0.00 0.00 31.74 5.73
2316 2548 0.178984 GGTTGGTTCCGGGAAAAGGA 60.179 55.000 11.82 0.00 35.69 3.36
2317 2549 1.549265 GGTTGGTTCCGGGAAAAGGAT 60.549 52.381 11.82 0.00 37.65 3.24
2320 2552 2.243810 TGGTTCCGGGAAAAGGATTTG 58.756 47.619 11.82 0.00 39.02 2.32
2321 2553 2.158445 TGGTTCCGGGAAAAGGATTTGA 60.158 45.455 11.82 0.00 39.02 2.69
2331 2571 4.473199 GAAAAGGATTTGAACGTACTGCC 58.527 43.478 0.00 0.00 39.02 4.85
2332 2572 1.722011 AGGATTTGAACGTACTGCCG 58.278 50.000 0.00 0.00 0.00 5.69
2333 2573 0.096454 GGATTTGAACGTACTGCCGC 59.904 55.000 0.00 0.00 0.00 6.53
2334 2574 1.076332 GATTTGAACGTACTGCCGCT 58.924 50.000 0.00 0.00 0.00 5.52
2335 2575 2.264813 GATTTGAACGTACTGCCGCTA 58.735 47.619 0.00 0.00 0.00 4.26
2543 2791 1.136529 CGCCGATCGAGCATAAATGTG 60.137 52.381 18.66 0.00 41.67 3.21
2554 2802 3.952535 GCATAAATGTGTTTAGGCCGAG 58.047 45.455 0.00 0.00 46.42 4.63
2555 2803 3.243068 GCATAAATGTGTTTAGGCCGAGG 60.243 47.826 0.00 0.00 46.42 4.63
2596 2844 1.656652 CTTGTCGGGAAGCGATTGAT 58.343 50.000 0.00 0.00 0.00 2.57
2597 2845 1.594862 CTTGTCGGGAAGCGATTGATC 59.405 52.381 0.00 0.00 0.00 2.92
2725 2997 2.480037 TCCGCGATGCATTATTTAGCTG 59.520 45.455 8.23 0.00 0.00 4.24
2726 2998 2.236690 CGCGATGCATTATTTAGCTGC 58.763 47.619 0.00 0.00 36.45 5.25
2765 3037 3.002791 CGTCTCTACCAACCACGTACTA 58.997 50.000 0.00 0.00 0.00 1.82
2766 3038 3.181516 CGTCTCTACCAACCACGTACTAC 60.182 52.174 0.00 0.00 0.00 2.73
2768 3040 4.094146 GTCTCTACCAACCACGTACTACTC 59.906 50.000 0.00 0.00 0.00 2.59
2769 3041 3.002791 TCTACCAACCACGTACTACTCG 58.997 50.000 0.00 0.00 0.00 4.18
2770 3042 1.609208 ACCAACCACGTACTACTCGT 58.391 50.000 0.00 0.00 42.33 4.18
2771 3043 2.778299 ACCAACCACGTACTACTCGTA 58.222 47.619 0.00 0.00 39.55 3.43
2772 3044 2.484264 ACCAACCACGTACTACTCGTAC 59.516 50.000 0.00 0.00 44.04 3.67
2778 3050 1.776034 CGTACTACTCGTACCCCCGC 61.776 65.000 0.00 0.00 44.52 6.13
2826 3103 2.967397 CCACTGCCCACATGCAAG 59.033 61.111 0.00 0.00 41.51 4.01
2827 3104 2.260434 CACTGCCCACATGCAAGC 59.740 61.111 0.00 0.00 41.51 4.01
2828 3105 2.203523 ACTGCCCACATGCAAGCA 60.204 55.556 0.00 0.00 41.51 3.91
2829 3106 1.833492 ACTGCCCACATGCAAGCAA 60.833 52.632 0.00 0.00 41.51 3.91
2830 3107 1.080093 CTGCCCACATGCAAGCAAG 60.080 57.895 0.00 0.00 41.51 4.01
2831 3108 1.812686 CTGCCCACATGCAAGCAAGT 61.813 55.000 0.00 0.00 41.51 3.16
2832 3109 0.539207 TGCCCACATGCAAGCAAGTA 60.539 50.000 2.37 0.00 38.56 2.24
2833 3110 0.109132 GCCCACATGCAAGCAAGTAC 60.109 55.000 2.37 0.00 0.00 2.73
2834 3111 1.538047 CCCACATGCAAGCAAGTACT 58.462 50.000 2.37 0.00 0.00 2.73
2835 3112 1.470098 CCCACATGCAAGCAAGTACTC 59.530 52.381 2.37 0.00 0.00 2.59
2836 3113 1.470098 CCACATGCAAGCAAGTACTCC 59.530 52.381 2.37 0.00 0.00 3.85
2837 3114 1.470098 CACATGCAAGCAAGTACTCCC 59.530 52.381 2.37 0.00 0.00 4.30
2838 3115 1.073763 ACATGCAAGCAAGTACTCCCA 59.926 47.619 0.54 0.00 0.00 4.37
2839 3116 2.291153 ACATGCAAGCAAGTACTCCCAT 60.291 45.455 0.54 0.00 0.00 4.00
2840 3117 1.825090 TGCAAGCAAGTACTCCCATG 58.175 50.000 0.00 0.00 0.00 3.66
2841 3118 0.453390 GCAAGCAAGTACTCCCATGC 59.547 55.000 8.89 8.89 39.06 4.06
2842 3119 0.729116 CAAGCAAGTACTCCCATGCG 59.271 55.000 10.76 0.00 43.39 4.73
2845 3122 1.982073 GCAAGTACTCCCATGCGTGC 61.982 60.000 0.00 0.00 33.29 5.34
2856 3136 1.978080 ATGCGTGCTTCAATGGCCA 60.978 52.632 8.56 8.56 0.00 5.36
2861 3141 2.673610 GCGTGCTTCAATGGCCAAATTA 60.674 45.455 10.96 0.00 0.00 1.40
2869 3149 8.703743 TGCTTCAATGGCCAAATTAAATATACT 58.296 29.630 10.96 0.00 0.00 2.12
2892 3172 8.413309 ACTACTACTATAATGGTTTATCGGCA 57.587 34.615 0.00 0.00 30.64 5.69
2894 3174 7.958053 ACTACTATAATGGTTTATCGGCAAC 57.042 36.000 0.00 0.00 30.64 4.17
2915 3195 4.214383 CCGCGCGTTCTGCATCTG 62.214 66.667 29.95 4.86 46.97 2.90
2916 3196 4.858200 CGCGCGTTCTGCATCTGC 62.858 66.667 24.19 0.00 46.97 4.26
2917 3197 3.494336 GCGCGTTCTGCATCTGCT 61.494 61.111 8.43 0.00 46.97 4.24
2918 3198 2.699809 CGCGTTCTGCATCTGCTC 59.300 61.111 0.00 0.00 46.97 4.26
2919 3199 1.808799 CGCGTTCTGCATCTGCTCT 60.809 57.895 0.00 0.00 46.97 4.09
2920 3200 1.714414 GCGTTCTGCATCTGCTCTG 59.286 57.895 3.53 0.00 45.45 3.35
2921 3201 1.714414 CGTTCTGCATCTGCTCTGC 59.286 57.895 3.53 0.00 42.66 4.26
2922 3202 0.740164 CGTTCTGCATCTGCTCTGCT 60.740 55.000 3.53 0.00 42.66 4.24
2923 3203 1.470458 CGTTCTGCATCTGCTCTGCTA 60.470 52.381 3.53 0.00 42.66 3.49
2924 3204 2.203401 GTTCTGCATCTGCTCTGCTAG 58.797 52.381 3.53 0.00 42.66 3.42
2925 3205 1.482954 TCTGCATCTGCTCTGCTAGT 58.517 50.000 3.53 0.00 42.66 2.57
2926 3206 1.829849 TCTGCATCTGCTCTGCTAGTT 59.170 47.619 3.53 0.00 42.66 2.24
2927 3207 2.235650 TCTGCATCTGCTCTGCTAGTTT 59.764 45.455 3.53 0.00 42.66 2.66
2928 3208 3.448660 TCTGCATCTGCTCTGCTAGTTTA 59.551 43.478 3.53 0.00 42.66 2.01
2929 3209 4.100653 TCTGCATCTGCTCTGCTAGTTTAT 59.899 41.667 3.53 0.00 42.66 1.40
2930 3210 4.124970 TGCATCTGCTCTGCTAGTTTATG 58.875 43.478 3.53 0.00 42.66 1.90
2931 3211 3.497640 GCATCTGCTCTGCTAGTTTATGG 59.502 47.826 0.00 0.00 36.68 2.74
2932 3212 4.701765 CATCTGCTCTGCTAGTTTATGGT 58.298 43.478 0.00 0.00 0.00 3.55
2933 3213 4.392921 TCTGCTCTGCTAGTTTATGGTC 57.607 45.455 0.00 0.00 0.00 4.02
2934 3214 3.119291 CTGCTCTGCTAGTTTATGGTCG 58.881 50.000 0.00 0.00 0.00 4.79
2935 3215 2.758423 TGCTCTGCTAGTTTATGGTCGA 59.242 45.455 0.00 0.00 0.00 4.20
2936 3216 3.117046 GCTCTGCTAGTTTATGGTCGAC 58.883 50.000 7.13 7.13 0.00 4.20
2951 3231 1.980156 GTCGACGAGACTTTTCTCTGC 59.020 52.381 0.00 0.00 45.61 4.26
2952 3232 1.880675 TCGACGAGACTTTTCTCTGCT 59.119 47.619 0.00 0.00 45.61 4.24
2953 3233 2.095668 TCGACGAGACTTTTCTCTGCTC 60.096 50.000 0.00 0.00 45.61 4.26
2954 3234 2.095466 CGACGAGACTTTTCTCTGCTCT 60.095 50.000 0.00 0.00 45.61 4.09
2955 3235 3.241701 GACGAGACTTTTCTCTGCTCTG 58.758 50.000 0.00 0.00 45.61 3.35
2956 3236 1.991965 CGAGACTTTTCTCTGCTCTGC 59.008 52.381 0.46 0.00 45.61 4.26
2957 3237 1.991965 GAGACTTTTCTCTGCTCTGCG 59.008 52.381 0.00 0.00 44.54 5.18
2958 3238 1.342819 AGACTTTTCTCTGCTCTGCGT 59.657 47.619 0.00 0.00 0.00 5.24
2959 3239 1.458827 GACTTTTCTCTGCTCTGCGTG 59.541 52.381 0.00 0.00 0.00 5.34
2960 3240 1.202580 ACTTTTCTCTGCTCTGCGTGT 60.203 47.619 0.00 0.00 0.00 4.49
2961 3241 2.035961 ACTTTTCTCTGCTCTGCGTGTA 59.964 45.455 0.00 0.00 0.00 2.90
2962 3242 2.354109 TTTCTCTGCTCTGCGTGTAG 57.646 50.000 0.00 0.00 0.00 2.74
2963 3243 1.248486 TTCTCTGCTCTGCGTGTAGT 58.752 50.000 0.00 0.00 0.00 2.73
2964 3244 2.109425 TCTCTGCTCTGCGTGTAGTA 57.891 50.000 0.00 0.00 0.00 1.82
2965 3245 1.738350 TCTCTGCTCTGCGTGTAGTAC 59.262 52.381 0.00 0.00 0.00 2.73
2981 3261 8.789881 CGTGTAGTACGTAGATTACTACTACT 57.210 38.462 20.53 16.73 46.59 2.57
2982 3262 9.880064 CGTGTAGTACGTAGATTACTACTACTA 57.120 37.037 20.53 16.18 46.59 1.82
3026 3306 2.358322 TTGTCTGTTGGGAAAGGGTC 57.642 50.000 0.00 0.00 0.00 4.46
3090 3370 4.180496 CTCCCGTGAGCCGTAAAC 57.820 61.111 0.00 0.00 33.66 2.01
3091 3371 1.447314 CTCCCGTGAGCCGTAAACC 60.447 63.158 0.00 0.00 33.66 3.27
3092 3372 2.812178 CCCGTGAGCCGTAAACCG 60.812 66.667 0.00 0.00 33.66 4.44
3102 3382 2.951101 CGTAAACCGGCCCTCCTGT 61.951 63.158 0.00 0.00 0.00 4.00
3104 3384 2.598787 TAAACCGGCCCTCCTGTGG 61.599 63.158 0.00 0.00 29.74 4.17
3173 3463 1.627879 TTAATCGACGGTGGTTACGC 58.372 50.000 0.00 0.00 34.00 4.42
3179 3469 0.458889 GACGGTGGTTACGCATGCTA 60.459 55.000 17.13 4.45 34.00 3.49
3211 3501 2.747460 TTGCAGGCGATGGACAGC 60.747 61.111 0.00 0.00 0.00 4.40
3364 3654 1.294780 CTCCTTCAGCGACAGCCTT 59.705 57.895 0.00 0.00 46.67 4.35
3400 3690 8.567948 CACCAGAGTAAGATTTGTTGTAAATGT 58.432 33.333 0.00 0.00 0.00 2.71
3503 3832 3.646976 CTGCTCATGCGGCCATCG 61.647 66.667 2.24 0.00 43.34 3.84
3536 3866 1.867233 CAAAATGCCCGGATCGAGTAG 59.133 52.381 0.73 0.00 0.00 2.57
3590 3920 0.539669 CGGGGAAAAGGCTTGGAACT 60.540 55.000 0.00 0.00 0.00 3.01
3610 3942 1.146485 TTTCCGGTTCGCTTGACCA 59.854 52.632 0.00 0.00 36.99 4.02
3614 3946 2.398554 CGGTTCGCTTGACCATGGG 61.399 63.158 18.09 0.00 36.99 4.00
3627 3959 2.437716 ATGGGTTGGCGCTTACGG 60.438 61.111 7.64 0.00 40.57 4.02
3645 3977 2.623535 CGGTTATCGTTGATGGAACCA 58.376 47.619 10.50 0.00 39.66 3.67
3647 3979 3.063452 CGGTTATCGTTGATGGAACCAAG 59.937 47.826 10.50 0.00 39.66 3.61
3648 3980 3.377172 GGTTATCGTTGATGGAACCAAGG 59.623 47.826 0.00 0.00 39.51 3.61
3649 3981 4.258543 GTTATCGTTGATGGAACCAAGGA 58.741 43.478 0.00 0.00 40.95 3.36
3650 3982 2.178912 TCGTTGATGGAACCAAGGAC 57.821 50.000 0.00 0.00 34.67 3.85
3651 3983 1.418264 TCGTTGATGGAACCAAGGACA 59.582 47.619 0.00 0.00 34.67 4.02
3652 3984 2.039746 TCGTTGATGGAACCAAGGACAT 59.960 45.455 0.00 0.00 34.67 3.06
3679 4011 5.536916 AGTGTCACTGCTTAGTTCTAACTCT 59.463 40.000 4.21 0.00 40.37 3.24
3697 4032 8.800332 TCTAACTCTTACTATTCCTTTGTCGTT 58.200 33.333 0.00 0.00 0.00 3.85
3840 4175 4.814294 GTCCCGGTACAGCAGCCG 62.814 72.222 0.00 0.00 46.80 5.52
3884 4231 2.284798 CTGTCATGTCCCGAGGGTCG 62.285 65.000 8.20 0.00 40.07 4.79
3930 4277 1.734477 CGACGAGCACAACCTCCTG 60.734 63.158 0.00 0.00 0.00 3.86
3931 4278 1.374758 GACGAGCACAACCTCCTGG 60.375 63.158 0.00 0.00 39.83 4.45
4054 4401 3.144120 CTGGCCGAGGACTGGATCG 62.144 68.421 0.00 0.00 38.65 3.69
4089 4436 1.679898 GTGGGGTCTCAAGGAGGTG 59.320 63.158 0.00 0.00 0.00 4.00
4133 4480 3.917760 GGAGATGGACCGGAGCCG 61.918 72.222 9.46 1.06 39.44 5.52
4174 4521 0.968393 AGAGGTGGAAGAGGAGCGTC 60.968 60.000 0.00 0.00 0.00 5.19
4188 4535 2.880879 CGTCAGATCGGCGTGGTG 60.881 66.667 6.85 2.63 0.00 4.17
4308 4663 7.932335 ACCATGTCGAATAAAACAAAACACTA 58.068 30.769 0.00 0.00 0.00 2.74
4309 4664 8.573035 ACCATGTCGAATAAAACAAAACACTAT 58.427 29.630 0.00 0.00 0.00 2.12
4310 4665 8.849490 CCATGTCGAATAAAACAAAACACTATG 58.151 33.333 0.00 0.00 0.00 2.23
4311 4666 9.393249 CATGTCGAATAAAACAAAACACTATGT 57.607 29.630 0.00 0.00 0.00 2.29
4337 4692 6.014584 AGGTACACAGACATGTTCAGATGTTA 60.015 38.462 0.00 0.00 37.65 2.41
4341 4696 5.063186 CACAGACATGTTCAGATGTTAGCTC 59.937 44.000 0.00 0.00 37.65 4.09
4343 4698 3.525537 ACATGTTCAGATGTTAGCTCGG 58.474 45.455 0.00 0.00 32.38 4.63
4346 4701 0.830648 TTCAGATGTTAGCTCGGGGG 59.169 55.000 0.00 0.00 0.00 5.40
4365 4720 0.175073 GGTTAGGGCATCTCGAACGT 59.825 55.000 0.00 0.00 0.00 3.99
4366 4721 1.557651 GTTAGGGCATCTCGAACGTC 58.442 55.000 0.00 0.00 0.00 4.34
4367 4722 1.134560 GTTAGGGCATCTCGAACGTCT 59.865 52.381 0.00 0.00 0.00 4.18
4368 4723 0.738975 TAGGGCATCTCGAACGTCTG 59.261 55.000 0.00 0.00 0.00 3.51
4369 4724 1.519455 GGGCATCTCGAACGTCTGG 60.519 63.158 0.00 0.00 0.00 3.86
4370 4725 2.167861 GGCATCTCGAACGTCTGGC 61.168 63.158 0.00 0.00 0.00 4.85
4371 4726 2.167861 GCATCTCGAACGTCTGGCC 61.168 63.158 0.00 0.00 0.00 5.36
4372 4727 1.513158 CATCTCGAACGTCTGGCCT 59.487 57.895 3.32 0.00 0.00 5.19
4373 4728 0.108615 CATCTCGAACGTCTGGCCTT 60.109 55.000 3.32 0.00 0.00 4.35
4374 4729 0.108615 ATCTCGAACGTCTGGCCTTG 60.109 55.000 3.32 0.00 0.00 3.61
4375 4730 1.176619 TCTCGAACGTCTGGCCTTGA 61.177 55.000 3.32 0.00 0.00 3.02
4376 4731 0.319555 CTCGAACGTCTGGCCTTGAA 60.320 55.000 3.32 0.00 0.00 2.69
4377 4732 0.105224 TCGAACGTCTGGCCTTGAAA 59.895 50.000 3.32 0.00 0.00 2.69
4378 4733 0.941542 CGAACGTCTGGCCTTGAAAA 59.058 50.000 3.32 0.00 0.00 2.29
4379 4734 1.333791 CGAACGTCTGGCCTTGAAAAC 60.334 52.381 3.32 0.00 0.00 2.43
4380 4735 1.673920 GAACGTCTGGCCTTGAAAACA 59.326 47.619 3.32 0.00 0.00 2.83
4381 4736 1.308998 ACGTCTGGCCTTGAAAACAG 58.691 50.000 3.32 0.00 0.00 3.16
4382 4737 0.593128 CGTCTGGCCTTGAAAACAGG 59.407 55.000 3.32 0.00 34.08 4.00
4391 4746 4.326504 CCTTGAAAACAGGCACTTCATT 57.673 40.909 0.00 0.00 34.60 2.57
4392 4747 4.696455 CCTTGAAAACAGGCACTTCATTT 58.304 39.130 0.00 0.00 34.60 2.32
4393 4748 4.508861 CCTTGAAAACAGGCACTTCATTTG 59.491 41.667 0.00 0.00 34.60 2.32
4394 4749 4.734398 TGAAAACAGGCACTTCATTTGT 57.266 36.364 0.00 0.00 34.60 2.83
4395 4750 4.681744 TGAAAACAGGCACTTCATTTGTC 58.318 39.130 0.00 0.00 34.60 3.18
4396 4751 4.402155 TGAAAACAGGCACTTCATTTGTCT 59.598 37.500 0.00 0.00 34.60 3.41
4397 4752 5.105392 TGAAAACAGGCACTTCATTTGTCTT 60.105 36.000 0.00 0.00 34.60 3.01
4398 4753 6.096141 TGAAAACAGGCACTTCATTTGTCTTA 59.904 34.615 0.00 0.00 34.60 2.10
4399 4754 6.655078 AAACAGGCACTTCATTTGTCTTAT 57.345 33.333 0.00 0.00 34.60 1.73
4400 4755 5.633830 ACAGGCACTTCATTTGTCTTATG 57.366 39.130 0.00 0.00 34.60 1.90
4401 4756 4.460382 ACAGGCACTTCATTTGTCTTATGG 59.540 41.667 0.00 0.00 34.60 2.74
4402 4757 4.701651 CAGGCACTTCATTTGTCTTATGGA 59.298 41.667 0.00 0.00 34.60 3.41
4403 4758 4.702131 AGGCACTTCATTTGTCTTATGGAC 59.298 41.667 0.00 0.00 40.08 4.02
4404 4759 4.702131 GGCACTTCATTTGTCTTATGGACT 59.298 41.667 0.00 0.00 44.74 3.85
4405 4760 5.392380 GGCACTTCATTTGTCTTATGGACTG 60.392 44.000 0.00 0.00 44.74 3.51
4406 4761 5.182001 GCACTTCATTTGTCTTATGGACTGT 59.818 40.000 0.00 0.00 44.74 3.55
4407 4762 6.605849 CACTTCATTTGTCTTATGGACTGTG 58.394 40.000 0.00 0.00 44.74 3.66
4408 4763 5.182001 ACTTCATTTGTCTTATGGACTGTGC 59.818 40.000 0.00 0.00 44.74 4.57
4409 4764 4.910195 TCATTTGTCTTATGGACTGTGCT 58.090 39.130 0.00 0.00 44.74 4.40
4410 4765 6.048732 TCATTTGTCTTATGGACTGTGCTA 57.951 37.500 0.00 0.00 44.74 3.49
4469 4836 4.493747 CTCCCGTTCGTCCCGCTC 62.494 72.222 0.00 0.00 0.00 5.03
4494 4867 2.159476 CGTTCTAGCTTGTGCATGCATT 60.159 45.455 25.64 9.93 42.74 3.56
4617 5015 8.072567 CCCAATGCGAAAATTCAAAATGTTTTA 58.927 29.630 0.00 0.00 0.00 1.52
4718 5116 5.123186 TCCCATGTTGATATGTTTTGACGAC 59.877 40.000 0.00 0.00 0.00 4.34
4837 5241 5.817296 GCATGAAAAAGTTTCTCCAACCTTT 59.183 36.000 0.00 0.00 35.77 3.11
4841 5249 9.764363 ATGAAAAAGTTTCTCCAACCTTTTATC 57.236 29.630 2.68 0.00 38.57 1.75
4853 5261 5.184864 CCAACCTTTTATCCACAAGCACATA 59.815 40.000 0.00 0.00 0.00 2.29
4854 5262 6.324819 CAACCTTTTATCCACAAGCACATAG 58.675 40.000 0.00 0.00 0.00 2.23
4970 5379 9.872757 TCAAAAAGTCGATTTCACATAAAGTAC 57.127 29.630 0.00 0.00 0.00 2.73
5010 5419 6.254589 CCTTCGAAACTAGATCTCATGTTGAC 59.745 42.308 0.00 2.00 0.00 3.18
5128 5537 5.180492 ACATGAGTAACCGTGGTACATTTTG 59.820 40.000 0.00 0.00 44.52 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.548357 CCCAGTCAGTCCCCAGACAG 61.548 65.000 0.00 0.00 46.15 3.51
48 49 0.671251 GTCGATGGGCTCTCGAATCT 59.329 55.000 9.27 0.00 45.75 2.40
49 50 0.661780 CGTCGATGGGCTCTCGAATC 60.662 60.000 9.27 0.00 45.75 2.52
50 51 1.360551 CGTCGATGGGCTCTCGAAT 59.639 57.895 9.27 0.00 45.75 3.34
51 52 2.771639 CCGTCGATGGGCTCTCGAA 61.772 63.158 16.43 0.00 45.75 3.71
52 53 3.209812 CCGTCGATGGGCTCTCGA 61.210 66.667 16.43 4.33 42.44 4.04
53 54 3.518998 ACCGTCGATGGGCTCTCG 61.519 66.667 27.02 4.69 37.47 4.04
54 55 1.739338 ATCACCGTCGATGGGCTCTC 61.739 60.000 27.02 0.00 0.00 3.20
68 69 1.212616 CTCTGGCGAATCGAATCACC 58.787 55.000 6.91 0.32 0.00 4.02
157 172 5.650703 TCGATAGGTGTGTCTGTCATCTTAA 59.349 40.000 0.00 0.00 0.00 1.85
158 173 5.066117 GTCGATAGGTGTGTCTGTCATCTTA 59.934 44.000 0.00 0.00 0.00 2.10
162 177 2.427453 GGTCGATAGGTGTGTCTGTCAT 59.573 50.000 0.00 0.00 0.00 3.06
176 191 2.441348 TGCCAGAGCCGGTCGATA 60.441 61.111 1.90 0.00 38.69 2.92
183 198 2.512515 GTTAGCCTGCCAGAGCCG 60.513 66.667 0.00 0.00 38.69 5.52
185 200 0.742635 GTCTGTTAGCCTGCCAGAGC 60.743 60.000 0.00 0.00 35.99 4.09
186 201 0.610174 TGTCTGTTAGCCTGCCAGAG 59.390 55.000 0.00 0.00 35.99 3.35
188 203 1.896220 TTTGTCTGTTAGCCTGCCAG 58.104 50.000 0.00 0.00 0.00 4.85
214 229 5.692204 CGCAGAAGAGAGAAGAAAAACAGTA 59.308 40.000 0.00 0.00 0.00 2.74
215 230 4.509600 CGCAGAAGAGAGAAGAAAAACAGT 59.490 41.667 0.00 0.00 0.00 3.55
216 231 4.610231 GCGCAGAAGAGAGAAGAAAAACAG 60.610 45.833 0.30 0.00 0.00 3.16
217 232 3.248602 GCGCAGAAGAGAGAAGAAAAACA 59.751 43.478 0.30 0.00 0.00 2.83
218 233 3.496507 AGCGCAGAAGAGAGAAGAAAAAC 59.503 43.478 11.47 0.00 0.00 2.43
219 234 3.733337 AGCGCAGAAGAGAGAAGAAAAA 58.267 40.909 11.47 0.00 0.00 1.94
220 235 3.243873 TGAGCGCAGAAGAGAGAAGAAAA 60.244 43.478 11.47 0.00 0.00 2.29
221 236 2.297315 TGAGCGCAGAAGAGAGAAGAAA 59.703 45.455 11.47 0.00 0.00 2.52
222 237 1.889170 TGAGCGCAGAAGAGAGAAGAA 59.111 47.619 11.47 0.00 0.00 2.52
223 238 1.539157 TGAGCGCAGAAGAGAGAAGA 58.461 50.000 11.47 0.00 0.00 2.87
224 239 2.195096 CATGAGCGCAGAAGAGAGAAG 58.805 52.381 11.47 0.00 0.00 2.85
225 240 1.738365 GCATGAGCGCAGAAGAGAGAA 60.738 52.381 11.47 0.00 0.00 2.87
226 241 0.179116 GCATGAGCGCAGAAGAGAGA 60.179 55.000 11.47 0.00 0.00 3.10
227 242 1.152989 GGCATGAGCGCAGAAGAGAG 61.153 60.000 11.47 0.00 43.41 3.20
228 243 1.153489 GGCATGAGCGCAGAAGAGA 60.153 57.895 11.47 0.00 43.41 3.10
229 244 0.103755 TAGGCATGAGCGCAGAAGAG 59.896 55.000 11.47 0.00 43.41 2.85
230 245 0.103755 CTAGGCATGAGCGCAGAAGA 59.896 55.000 11.47 0.00 43.41 2.87
231 246 0.179089 ACTAGGCATGAGCGCAGAAG 60.179 55.000 11.47 0.00 43.41 2.85
232 247 0.460811 CACTAGGCATGAGCGCAGAA 60.461 55.000 11.47 0.00 43.41 3.02
233 248 1.142531 CACTAGGCATGAGCGCAGA 59.857 57.895 11.47 0.00 43.41 4.26
234 249 0.249784 ATCACTAGGCATGAGCGCAG 60.250 55.000 11.47 0.00 43.41 5.18
235 250 1.039856 TATCACTAGGCATGAGCGCA 58.960 50.000 11.47 0.00 43.41 6.09
236 251 2.376808 ATATCACTAGGCATGAGCGC 57.623 50.000 0.00 0.00 43.41 5.92
237 252 4.388165 CAGAAATATCACTAGGCATGAGCG 59.612 45.833 0.00 0.00 43.41 5.03
238 253 4.153835 GCAGAAATATCACTAGGCATGAGC 59.846 45.833 0.00 0.00 41.10 4.26
239 254 5.178996 GTGCAGAAATATCACTAGGCATGAG 59.821 44.000 0.00 0.00 32.16 2.90
240 255 5.059161 GTGCAGAAATATCACTAGGCATGA 58.941 41.667 0.00 0.00 32.16 3.07
241 256 4.084171 CGTGCAGAAATATCACTAGGCATG 60.084 45.833 0.00 0.00 32.16 4.06
242 257 4.060900 CGTGCAGAAATATCACTAGGCAT 58.939 43.478 0.00 0.00 32.16 4.40
243 258 3.118775 ACGTGCAGAAATATCACTAGGCA 60.119 43.478 0.00 0.00 0.00 4.75
244 259 3.458189 ACGTGCAGAAATATCACTAGGC 58.542 45.455 0.00 0.00 0.00 3.93
245 260 6.073327 TCTACGTGCAGAAATATCACTAGG 57.927 41.667 0.00 0.00 0.00 3.02
246 261 6.418226 GGTTCTACGTGCAGAAATATCACTAG 59.582 42.308 0.00 0.00 36.34 2.57
247 262 6.096423 AGGTTCTACGTGCAGAAATATCACTA 59.904 38.462 0.00 0.00 36.34 2.74
248 263 5.105310 AGGTTCTACGTGCAGAAATATCACT 60.105 40.000 0.00 0.00 36.34 3.41
252 267 6.979238 GTCTAAGGTTCTACGTGCAGAAATAT 59.021 38.462 0.00 0.00 36.34 1.28
288 333 0.958382 CGGTGATTTCAGCCCCGAAA 60.958 55.000 4.31 0.00 41.08 3.46
289 334 1.376683 CGGTGATTTCAGCCCCGAA 60.377 57.895 4.31 0.00 41.08 4.30
290 335 2.267642 CGGTGATTTCAGCCCCGA 59.732 61.111 4.31 0.00 41.08 5.14
291 336 3.508840 GCGGTGATTTCAGCCCCG 61.509 66.667 4.31 4.30 40.99 5.73
292 337 2.044946 AGCGGTGATTTCAGCCCC 60.045 61.111 4.31 0.00 40.99 5.80
293 338 0.749454 ATCAGCGGTGATTTCAGCCC 60.749 55.000 23.81 0.00 40.84 5.19
294 339 0.659957 GATCAGCGGTGATTTCAGCC 59.340 55.000 29.08 13.00 43.92 4.85
295 340 0.659957 GGATCAGCGGTGATTTCAGC 59.340 55.000 29.08 16.51 43.92 4.26
296 341 0.933097 CGGATCAGCGGTGATTTCAG 59.067 55.000 29.08 16.24 43.92 3.02
297 342 0.461870 CCGGATCAGCGGTGATTTCA 60.462 55.000 29.08 3.26 43.92 2.69
309 354 0.399091 AGGCTGAGGATTCCGGATCA 60.399 55.000 4.15 4.93 36.43 2.92
310 355 0.034616 CAGGCTGAGGATTCCGGATC 59.965 60.000 9.42 5.08 0.00 3.36
311 356 2.049627 GCAGGCTGAGGATTCCGGAT 62.050 60.000 20.86 0.00 0.00 4.18
312 357 2.735772 GCAGGCTGAGGATTCCGGA 61.736 63.158 20.86 0.00 0.00 5.14
313 358 2.203126 GCAGGCTGAGGATTCCGG 60.203 66.667 20.86 0.00 0.00 5.14
314 359 2.578163 TTCGCAGGCTGAGGATTCCG 62.578 60.000 20.86 10.43 0.00 4.30
315 360 1.092345 GTTCGCAGGCTGAGGATTCC 61.092 60.000 20.86 0.00 0.00 3.01
327 382 1.337817 CGTCCTGAGTTCGTTCGCAG 61.338 60.000 6.43 6.43 35.57 5.18
330 385 0.237761 AGTCGTCCTGAGTTCGTTCG 59.762 55.000 0.00 0.00 0.00 3.95
343 398 3.303495 CACGGTTGATACATTCAGTCGTC 59.697 47.826 0.00 0.00 40.40 4.20
345 400 2.029244 GCACGGTTGATACATTCAGTCG 59.971 50.000 0.00 0.00 37.50 4.18
349 405 3.604582 TCATGCACGGTTGATACATTCA 58.395 40.909 0.00 0.00 0.00 2.57
366 422 1.081892 CAGAGCCCAACGAGTTCATG 58.918 55.000 0.00 0.00 0.00 3.07
369 425 0.868406 CAACAGAGCCCAACGAGTTC 59.132 55.000 0.00 0.00 0.00 3.01
372 428 2.328099 GCCAACAGAGCCCAACGAG 61.328 63.158 0.00 0.00 0.00 4.18
376 432 0.250727 GTGTAGCCAACAGAGCCCAA 60.251 55.000 0.00 0.00 39.29 4.12
385 441 1.281656 GCAACGGTGTGTAGCCAAC 59.718 57.895 0.66 0.00 0.00 3.77
386 442 1.894756 GGCAACGGTGTGTAGCCAA 60.895 57.895 0.66 0.00 44.59 4.52
399 455 1.058404 GTCTTGTACTCGACGGCAAC 58.942 55.000 0.00 0.00 0.00 4.17
401 457 0.039798 GTGTCTTGTACTCGACGGCA 60.040 55.000 0.00 0.00 32.93 5.69
404 460 0.453950 CCCGTGTCTTGTACTCGACG 60.454 60.000 9.49 0.00 45.57 5.12
433 524 5.877012 CCGATCATCCACTTCTATAATTGGG 59.123 44.000 0.00 0.00 36.36 4.12
447 538 0.394192 GATCTGTGGCCGATCATCCA 59.606 55.000 12.70 0.00 37.73 3.41
460 552 0.457509 CGTGAAGCTGAGCGATCTGT 60.458 55.000 9.35 0.00 0.00 3.41
466 558 0.666274 TTGGTACGTGAAGCTGAGCG 60.666 55.000 0.00 0.00 0.00 5.03
468 560 1.060713 CGTTGGTACGTGAAGCTGAG 58.939 55.000 0.00 0.00 42.72 3.35
479 571 0.390209 ACATGGGCGTACGTTGGTAC 60.390 55.000 17.90 0.00 44.50 3.34
480 572 1.134753 CTACATGGGCGTACGTTGGTA 59.865 52.381 17.90 11.18 0.00 3.25
481 573 0.108520 CTACATGGGCGTACGTTGGT 60.109 55.000 17.90 10.65 0.00 3.67
482 574 1.426041 GCTACATGGGCGTACGTTGG 61.426 60.000 17.90 5.17 0.00 3.77
483 575 0.459585 AGCTACATGGGCGTACGTTG 60.460 55.000 17.90 11.82 34.52 4.10
484 576 1.066605 CTAGCTACATGGGCGTACGTT 59.933 52.381 17.90 0.00 34.52 3.99
520 648 3.511934 CGAGGCTAGTAGGAATTATGGCT 59.488 47.826 0.00 0.00 0.00 4.75
521 649 3.258622 ACGAGGCTAGTAGGAATTATGGC 59.741 47.826 0.00 0.00 0.00 4.40
522 650 5.393243 GCTACGAGGCTAGTAGGAATTATGG 60.393 48.000 28.45 8.26 41.24 2.74
538 666 3.528370 CCAGGGACGGCTACGAGG 61.528 72.222 0.00 0.00 44.60 4.63
669 798 2.289819 TGGGCGTGGGTTTAAGTAGAAG 60.290 50.000 0.00 0.00 0.00 2.85
670 799 1.698532 TGGGCGTGGGTTTAAGTAGAA 59.301 47.619 0.00 0.00 0.00 2.10
713 843 2.028130 GAGGCGATGGAGAAGAGAAGA 58.972 52.381 0.00 0.00 0.00 2.87
714 844 1.068434 GGAGGCGATGGAGAAGAGAAG 59.932 57.143 0.00 0.00 0.00 2.85
715 845 1.115467 GGAGGCGATGGAGAAGAGAA 58.885 55.000 0.00 0.00 0.00 2.87
716 846 0.260230 AGGAGGCGATGGAGAAGAGA 59.740 55.000 0.00 0.00 0.00 3.10
717 847 0.673437 GAGGAGGCGATGGAGAAGAG 59.327 60.000 0.00 0.00 0.00 2.85
756 886 0.318762 TGTTTTTATGCGGGGGTTGC 59.681 50.000 0.00 0.00 0.00 4.17
854 984 0.396139 TACCCCGCTGATCCGTACTT 60.396 55.000 0.00 0.00 0.00 2.24
867 997 1.812507 GCGGCTGTTAAGTACCCCG 60.813 63.158 0.00 0.00 41.12 5.73
870 1000 1.366854 GCCAGCGGCTGTTAAGTACC 61.367 60.000 26.79 3.00 46.69 3.34
923 1053 0.106519 AGAGCACAAAAGGCCACTGT 60.107 50.000 5.01 1.30 0.00 3.55
965 1099 3.443925 CTCTCCGCGAGCTGACCA 61.444 66.667 8.23 0.00 31.99 4.02
966 1100 4.200283 CCTCTCCGCGAGCTGACC 62.200 72.222 8.23 0.00 38.49 4.02
1038 1173 0.469070 CCAGCTCCAGGAGATCCTTG 59.531 60.000 21.89 9.11 46.09 3.61
1380 1524 0.244994 TCGAGCTTGCAGAGAAGTCC 59.755 55.000 0.00 0.00 0.00 3.85
1389 1533 2.568612 CTCTCCGTCGAGCTTGCA 59.431 61.111 0.00 0.00 35.94 4.08
1463 1607 2.842645 AGGTGATTAGGACGGTACCT 57.157 50.000 10.90 0.00 43.32 3.08
1464 1608 2.762327 TGAAGGTGATTAGGACGGTACC 59.238 50.000 0.16 0.16 0.00 3.34
1465 1609 4.667519 ATGAAGGTGATTAGGACGGTAC 57.332 45.455 0.00 0.00 0.00 3.34
1469 1613 6.546395 CAAGAAAATGAAGGTGATTAGGACG 58.454 40.000 0.00 0.00 0.00 4.79
1513 1661 3.550678 GCTCCTAACTGAATTAACGACCG 59.449 47.826 0.00 0.00 0.00 4.79
1549 1697 0.534873 CCAAATTAAAGCCGGTGGGG 59.465 55.000 1.90 0.00 39.58 4.96
1550 1698 1.203758 GACCAAATTAAAGCCGGTGGG 59.796 52.381 1.90 0.00 0.00 4.61
1551 1699 1.203758 GGACCAAATTAAAGCCGGTGG 59.796 52.381 1.90 2.02 0.00 4.61
1552 1700 1.135517 CGGACCAAATTAAAGCCGGTG 60.136 52.381 1.90 0.00 35.42 4.94
1553 1701 1.170442 CGGACCAAATTAAAGCCGGT 58.830 50.000 1.90 0.00 35.42 5.28
1595 1760 1.576356 GCAATCCAGAGCTTACGGAG 58.424 55.000 5.98 0.00 30.84 4.63
1596 1761 0.178068 GGCAATCCAGAGCTTACGGA 59.822 55.000 2.56 2.56 0.00 4.69
1597 1762 0.107703 TGGCAATCCAGAGCTTACGG 60.108 55.000 0.00 0.00 37.47 4.02
1598 1763 3.458872 TGGCAATCCAGAGCTTACG 57.541 52.632 0.00 0.00 37.47 3.18
1634 1799 7.201496 CCAAATGAATTACTCCACTACGTGTAC 60.201 40.741 0.00 0.00 0.00 2.90
1710 1882 0.452987 ACACATGCATGCACGAATCC 59.547 50.000 25.37 0.00 0.00 3.01
1779 1951 4.065281 AGGACCACGTACCGCTGC 62.065 66.667 0.00 0.00 0.00 5.25
1805 1977 4.995124 ACTCTGTACAAATAGTGCGGTAG 58.005 43.478 0.00 0.00 39.86 3.18
1809 1981 6.783162 AGTAGTACTCTGTACAAATAGTGCG 58.217 40.000 0.00 0.00 35.35 5.34
1830 2002 6.250739 CACGACTTTACTCTACGTACGTAGTA 59.749 42.308 39.74 30.90 45.90 1.82
1831 2003 5.061064 CACGACTTTACTCTACGTACGTAGT 59.939 44.000 39.74 31.80 45.90 2.73
1832 2004 5.061064 ACACGACTTTACTCTACGTACGTAG 59.939 44.000 37.87 37.87 46.82 3.51
1868 2040 1.354506 GAGTATCGTCACGGTCGGG 59.645 63.158 0.00 0.00 0.00 5.14
1905 2085 6.153680 ACAGTGGACTACTACTAGTACTACGT 59.846 42.308 0.00 4.58 37.60 3.57
1913 2093 7.516452 AGGGTATAACAGTGGACTACTACTAG 58.484 42.308 0.00 0.00 37.60 2.57
1924 2104 2.104281 GGTGGCTAGGGTATAACAGTGG 59.896 54.545 0.00 0.00 0.00 4.00
1944 2124 1.325355 TCCGAGGCCGTAAATCTAGG 58.675 55.000 0.00 0.00 0.00 3.02
1977 2157 7.095017 GCTTCTAAACTAAAGAATGCAGTCTGT 60.095 37.037 18.72 15.32 32.72 3.41
1997 2177 1.753930 TGTACCACGATCCGCTTCTA 58.246 50.000 0.00 0.00 0.00 2.10
2005 2185 6.292389 AGTACTACGTTATGTACCACGATC 57.708 41.667 14.25 0.00 39.66 3.69
2007 2187 6.035650 GTGTAGTACTACGTTATGTACCACGA 59.964 42.308 24.36 2.74 39.66 4.35
2076 2270 4.624024 GCAGTGCGTACATAGTTTTACTCA 59.376 41.667 6.38 0.00 0.00 3.41
2132 2334 0.109597 CAATCGCAACTCCAAGGCAC 60.110 55.000 0.00 0.00 0.00 5.01
2151 2353 3.934457 TTTTGCTACCAAAAGCTAGGC 57.066 42.857 0.00 0.00 43.84 3.93
2177 2379 2.742372 CGCTGCCACCAGTACCAC 60.742 66.667 0.00 0.00 41.26 4.16
2178 2380 3.234630 GACGCTGCCACCAGTACCA 62.235 63.158 0.00 0.00 41.26 3.25
2179 2381 2.434359 GACGCTGCCACCAGTACC 60.434 66.667 0.00 0.00 41.26 3.34
2193 2395 3.625764 TGTTTTGTCTTGAGAAAGGGACG 59.374 43.478 0.00 0.00 0.00 4.79
2195 2397 5.694995 AGATGTTTTGTCTTGAGAAAGGGA 58.305 37.500 0.00 0.00 0.00 4.20
2196 2398 6.396829 AAGATGTTTTGTCTTGAGAAAGGG 57.603 37.500 0.00 0.00 34.77 3.95
2200 2402 6.458206 CGGTGAAAGATGTTTTGTCTTGAGAA 60.458 38.462 0.00 0.00 36.14 2.87
2211 2413 4.094830 ACCTAACCGGTGAAAGATGTTT 57.905 40.909 8.52 0.00 46.80 2.83
2217 2419 5.277828 CTGAAAGAAACCTAACCGGTGAAAG 60.278 44.000 8.52 6.35 40.93 2.62
2223 2425 1.463444 CGCTGAAAGAAACCTAACCGG 59.537 52.381 0.00 0.00 34.07 5.28
2243 2475 5.620429 GCGGATTTCAGAGGCTATACTACTC 60.620 48.000 0.00 0.00 0.00 2.59
2309 2541 4.473199 GGCAGTACGTTCAAATCCTTTTC 58.527 43.478 0.00 0.00 0.00 2.29
2316 2548 1.997606 GTAGCGGCAGTACGTTCAAAT 59.002 47.619 1.45 0.00 35.98 2.32
2317 2549 1.421382 GTAGCGGCAGTACGTTCAAA 58.579 50.000 1.45 0.00 35.98 2.69
2320 2552 3.671723 CGTAGCGGCAGTACGTTC 58.328 61.111 12.11 0.00 38.74 3.95
2333 2573 4.651994 CAATTTTCACCAAGCTAGCGTAG 58.348 43.478 9.55 1.06 0.00 3.51
2334 2574 3.119990 GCAATTTTCACCAAGCTAGCGTA 60.120 43.478 9.55 0.00 0.00 4.42
2335 2575 2.351738 GCAATTTTCACCAAGCTAGCGT 60.352 45.455 9.55 2.32 0.00 5.07
2369 2609 3.081804 ACAGGCCTGTAGCAATTTGTAC 58.918 45.455 37.12 1.20 46.50 2.90
2371 2611 1.888512 CACAGGCCTGTAGCAATTTGT 59.111 47.619 37.27 9.78 46.50 2.83
2375 2615 0.987294 AGACACAGGCCTGTAGCAAT 59.013 50.000 37.27 20.05 46.50 3.56
2377 2617 1.186200 CTAGACACAGGCCTGTAGCA 58.814 55.000 37.27 20.78 46.50 3.49
2379 2619 1.407258 GCTCTAGACACAGGCCTGTAG 59.593 57.143 37.27 29.05 42.83 2.74
2380 2620 1.006043 AGCTCTAGACACAGGCCTGTA 59.994 52.381 37.27 21.34 42.83 2.74
2423 2670 0.951040 CAGCGGGAGTGAACAGGAAC 60.951 60.000 0.00 0.00 0.00 3.62
2466 2713 2.034879 ATGTAGCCACGCACTGCAC 61.035 57.895 1.11 0.00 32.40 4.57
2467 2714 2.034317 CATGTAGCCACGCACTGCA 61.034 57.895 1.11 0.00 34.17 4.41
2468 2715 2.753966 CCATGTAGCCACGCACTGC 61.754 63.158 0.00 0.00 0.00 4.40
2469 2716 2.108514 CCCATGTAGCCACGCACTG 61.109 63.158 0.00 0.00 0.00 3.66
2470 2717 2.268920 CCCATGTAGCCACGCACT 59.731 61.111 0.00 0.00 0.00 4.40
2543 2791 2.202892 CCTCGCCTCGGCCTAAAC 60.203 66.667 0.00 0.00 37.98 2.01
2564 2812 1.269166 CGACAAGCCGCACTAACTAG 58.731 55.000 0.00 0.00 0.00 2.57
2596 2844 2.338620 CGACAACACTGGGCTCGA 59.661 61.111 0.00 0.00 0.00 4.04
2597 2845 3.414700 GCGACAACACTGGGCTCG 61.415 66.667 0.00 0.00 0.00 5.03
2598 2846 1.569479 GAAGCGACAACACTGGGCTC 61.569 60.000 0.00 0.00 35.97 4.70
2599 2847 1.598130 GAAGCGACAACACTGGGCT 60.598 57.895 0.00 0.00 37.87 5.19
2765 3037 4.791069 ATGGGCGGGGGTACGAGT 62.791 66.667 0.00 0.00 35.47 4.18
2766 3038 4.235762 CATGGGCGGGGGTACGAG 62.236 72.222 0.00 0.00 35.47 4.18
2768 3040 4.540735 GACATGGGCGGGGGTACG 62.541 72.222 0.00 0.00 0.00 3.67
2769 3041 4.185286 GGACATGGGCGGGGGTAC 62.185 72.222 0.00 0.00 0.00 3.34
2770 3042 4.424867 AGGACATGGGCGGGGGTA 62.425 66.667 0.00 0.00 0.00 3.69
2778 3050 4.758251 TGCGCACGAGGACATGGG 62.758 66.667 5.66 0.00 0.00 4.00
2826 3103 1.982073 GCACGCATGGGAGTACTTGC 61.982 60.000 17.76 10.70 37.94 4.01
2827 3104 0.391661 AGCACGCATGGGAGTACTTG 60.392 55.000 17.76 4.11 0.00 3.16
2828 3105 0.324943 AAGCACGCATGGGAGTACTT 59.675 50.000 17.76 10.46 0.00 2.24
2829 3106 0.108138 GAAGCACGCATGGGAGTACT 60.108 55.000 17.76 0.00 0.00 2.73
2830 3107 0.391130 TGAAGCACGCATGGGAGTAC 60.391 55.000 17.76 5.33 0.00 2.73
2831 3108 0.323302 TTGAAGCACGCATGGGAGTA 59.677 50.000 17.76 0.00 0.00 2.59
2832 3109 0.322816 ATTGAAGCACGCATGGGAGT 60.323 50.000 17.76 0.00 0.00 3.85
2833 3110 0.099968 CATTGAAGCACGCATGGGAG 59.900 55.000 17.76 9.99 0.00 4.30
2834 3111 1.314534 CCATTGAAGCACGCATGGGA 61.315 55.000 17.76 0.00 0.00 4.37
2835 3112 1.140161 CCATTGAAGCACGCATGGG 59.860 57.895 8.44 8.44 0.00 4.00
2836 3113 1.517694 GCCATTGAAGCACGCATGG 60.518 57.895 0.00 2.54 0.00 3.66
2837 3114 1.517694 GGCCATTGAAGCACGCATG 60.518 57.895 0.00 0.00 0.00 4.06
2838 3115 1.534336 TTGGCCATTGAAGCACGCAT 61.534 50.000 6.09 0.00 0.00 4.73
2839 3116 1.742324 TTTGGCCATTGAAGCACGCA 61.742 50.000 6.09 0.00 0.00 5.24
2840 3117 0.390209 ATTTGGCCATTGAAGCACGC 60.390 50.000 6.09 0.00 0.00 5.34
2841 3118 2.083167 AATTTGGCCATTGAAGCACG 57.917 45.000 6.09 0.00 0.00 5.34
2842 3119 7.790823 ATATTTAATTTGGCCATTGAAGCAC 57.209 32.000 6.09 0.00 0.00 4.40
2869 3149 7.809331 CGTTGCCGATAAACCATTATAGTAGTA 59.191 37.037 0.00 0.00 35.63 1.82
2871 3151 6.400727 GCGTTGCCGATAAACCATTATAGTAG 60.401 42.308 0.00 0.00 35.63 2.57
2872 3152 5.406175 GCGTTGCCGATAAACCATTATAGTA 59.594 40.000 0.00 0.00 35.63 1.82
2873 3153 4.212636 GCGTTGCCGATAAACCATTATAGT 59.787 41.667 0.00 0.00 35.63 2.12
2874 3154 4.665645 CGCGTTGCCGATAAACCATTATAG 60.666 45.833 0.00 0.00 35.63 1.31
2875 3155 3.184783 CGCGTTGCCGATAAACCATTATA 59.815 43.478 0.00 0.00 35.63 0.98
2876 3156 2.032377 CGCGTTGCCGATAAACCATTAT 60.032 45.455 0.00 0.00 35.63 1.28
2878 3158 0.098025 CGCGTTGCCGATAAACCATT 59.902 50.000 0.00 0.00 35.63 3.16
2879 3159 1.719117 CGCGTTGCCGATAAACCAT 59.281 52.632 0.00 0.00 35.63 3.55
2881 3161 2.277057 GCGCGTTGCCGATAAACC 60.277 61.111 8.43 0.00 37.76 3.27
2901 3181 1.808799 AGAGCAGATGCAGAACGCG 60.809 57.895 3.53 3.53 46.97 6.01
2911 3191 4.500545 CGACCATAAACTAGCAGAGCAGAT 60.501 45.833 0.00 0.00 0.00 2.90
2912 3192 3.181486 CGACCATAAACTAGCAGAGCAGA 60.181 47.826 0.00 0.00 0.00 4.26
2913 3193 3.119291 CGACCATAAACTAGCAGAGCAG 58.881 50.000 0.00 0.00 0.00 4.24
2914 3194 2.758423 TCGACCATAAACTAGCAGAGCA 59.242 45.455 0.00 0.00 0.00 4.26
2915 3195 3.117046 GTCGACCATAAACTAGCAGAGC 58.883 50.000 3.51 0.00 0.00 4.09
2916 3196 3.064958 TCGTCGACCATAAACTAGCAGAG 59.935 47.826 10.58 0.00 0.00 3.35
2917 3197 3.011818 TCGTCGACCATAAACTAGCAGA 58.988 45.455 10.58 0.00 0.00 4.26
2918 3198 3.064958 TCTCGTCGACCATAAACTAGCAG 59.935 47.826 10.58 0.00 0.00 4.24
2919 3199 3.011818 TCTCGTCGACCATAAACTAGCA 58.988 45.455 10.58 0.00 0.00 3.49
2920 3200 3.065095 AGTCTCGTCGACCATAAACTAGC 59.935 47.826 10.58 0.00 43.91 3.42
2921 3201 4.879104 AGTCTCGTCGACCATAAACTAG 57.121 45.455 10.58 0.00 43.91 2.57
2922 3202 5.633830 AAAGTCTCGTCGACCATAAACTA 57.366 39.130 10.58 0.00 43.91 2.24
2923 3203 4.516365 AAAGTCTCGTCGACCATAAACT 57.484 40.909 10.58 4.08 43.91 2.66
2924 3204 4.922103 AGAAAAGTCTCGTCGACCATAAAC 59.078 41.667 10.58 1.71 43.91 2.01
2925 3205 5.130292 AGAAAAGTCTCGTCGACCATAAA 57.870 39.130 10.58 0.00 43.91 1.40
2926 3206 4.730657 GAGAAAAGTCTCGTCGACCATAA 58.269 43.478 10.58 0.00 43.91 1.90
2927 3207 4.352600 GAGAAAAGTCTCGTCGACCATA 57.647 45.455 10.58 0.00 43.91 2.74
2928 3208 3.219052 GAGAAAAGTCTCGTCGACCAT 57.781 47.619 10.58 0.00 43.91 3.55
2929 3209 2.701073 GAGAAAAGTCTCGTCGACCA 57.299 50.000 10.58 0.00 43.91 4.02
2948 3228 2.931536 CGTACTACACGCAGAGCAG 58.068 57.895 0.00 0.00 45.03 4.24
2978 3258 8.726988 GCAGATGAAACAAACCAATTACTAGTA 58.273 33.333 0.00 0.00 0.00 1.82
2979 3259 7.573096 CGCAGATGAAACAAACCAATTACTAGT 60.573 37.037 0.00 0.00 0.00 2.57
2980 3260 6.742718 CGCAGATGAAACAAACCAATTACTAG 59.257 38.462 0.00 0.00 0.00 2.57
2981 3261 6.205853 ACGCAGATGAAACAAACCAATTACTA 59.794 34.615 0.00 0.00 0.00 1.82
2982 3262 5.009610 ACGCAGATGAAACAAACCAATTACT 59.990 36.000 0.00 0.00 0.00 2.24
2983 3263 5.219633 ACGCAGATGAAACAAACCAATTAC 58.780 37.500 0.00 0.00 0.00 1.89
2984 3264 5.446143 ACGCAGATGAAACAAACCAATTA 57.554 34.783 0.00 0.00 0.00 1.40
2985 3265 4.320608 ACGCAGATGAAACAAACCAATT 57.679 36.364 0.00 0.00 0.00 2.32
2990 3270 4.204978 CAGACAAACGCAGATGAAACAAAC 59.795 41.667 0.00 0.00 0.00 2.93
3084 3364 2.125269 CAGGAGGGCCGGTTTACG 60.125 66.667 1.90 0.00 43.80 3.18
3085 3365 1.376812 CACAGGAGGGCCGGTTTAC 60.377 63.158 1.90 0.00 40.84 2.01
3086 3366 2.598787 CCACAGGAGGGCCGGTTTA 61.599 63.158 1.90 0.00 40.84 2.01
3087 3367 3.966543 CCACAGGAGGGCCGGTTT 61.967 66.667 1.90 0.00 40.84 3.27
3139 3419 3.897345 TTAAAGTTGTCGCGCGCGC 62.897 57.895 45.41 42.65 39.59 6.86
3140 3420 1.179717 GATTAAAGTTGTCGCGCGCG 61.180 55.000 44.84 44.84 41.35 6.86
3141 3421 1.179717 CGATTAAAGTTGTCGCGCGC 61.180 55.000 27.95 23.91 0.00 6.86
3142 3422 0.364180 TCGATTAAAGTTGTCGCGCG 59.636 50.000 26.76 26.76 35.48 6.86
3143 3423 1.782285 GTCGATTAAAGTTGTCGCGC 58.218 50.000 0.00 0.00 35.48 6.86
3144 3424 1.266211 CCGTCGATTAAAGTTGTCGCG 60.266 52.381 0.00 0.00 35.48 5.87
3145 3425 1.723003 ACCGTCGATTAAAGTTGTCGC 59.277 47.619 0.00 0.00 35.48 5.19
3146 3426 2.091588 CCACCGTCGATTAAAGTTGTCG 59.908 50.000 0.00 0.00 36.75 4.35
3147 3427 3.062042 ACCACCGTCGATTAAAGTTGTC 58.938 45.455 0.00 0.00 0.00 3.18
3148 3428 3.116079 ACCACCGTCGATTAAAGTTGT 57.884 42.857 0.00 0.00 0.00 3.32
3149 3429 4.433283 CGTAACCACCGTCGATTAAAGTTG 60.433 45.833 0.00 0.00 0.00 3.16
3150 3430 3.674753 CGTAACCACCGTCGATTAAAGTT 59.325 43.478 0.00 0.00 0.00 2.66
3151 3431 3.244976 CGTAACCACCGTCGATTAAAGT 58.755 45.455 0.00 0.00 0.00 2.66
3173 3463 1.596260 CATCGCACTCCAGTTAGCATG 59.404 52.381 0.00 0.00 0.00 4.06
3179 3469 0.534877 TGCAACATCGCACTCCAGTT 60.535 50.000 0.00 0.00 36.86 3.16
3211 3501 3.154473 TCCGCCTCCTTGGATCCG 61.154 66.667 7.39 0.00 38.35 4.18
3349 3639 2.866028 GCAAGGCTGTCGCTGAAG 59.134 61.111 0.00 0.00 36.09 3.02
3364 3654 1.815817 TACTCTGGTGAAGCTGCGCA 61.816 55.000 10.98 10.98 0.00 6.09
3400 3690 7.117523 CGCATTTAGAAATCCATTTTTGTTGGA 59.882 33.333 0.00 0.00 46.86 3.53
3439 3765 1.515081 CTTTTCTGGAACGCCCGTAA 58.485 50.000 0.00 0.00 37.93 3.18
3482 3811 3.275338 GGCCGCATGAGCAGTAGC 61.275 66.667 9.97 0.00 42.27 3.58
3503 3832 1.701704 CATTTTGCTTTCTCCGGCAC 58.298 50.000 0.00 0.00 38.23 5.01
3536 3866 4.554036 GGCCCCGTGCAGGATCTC 62.554 72.222 8.24 0.00 45.00 2.75
3590 3920 1.161563 GGTCAAGCGAACCGGAAACA 61.162 55.000 9.46 0.00 0.00 2.83
3610 3942 2.437716 CCGTAAGCGCCAACCCAT 60.438 61.111 2.29 0.00 36.67 4.00
3614 3946 0.299597 CGATAACCGTAAGCGCCAAC 59.700 55.000 2.29 0.75 36.67 3.77
3627 3959 4.094442 GTCCTTGGTTCCATCAACGATAAC 59.906 45.833 0.00 0.00 35.59 1.89
3634 3966 4.081406 CTCAATGTCCTTGGTTCCATCAA 58.919 43.478 0.00 0.00 35.43 2.57
3649 3981 4.342862 ACTAAGCAGTGACACTCAATGT 57.657 40.909 4.74 0.00 43.60 2.71
3650 3982 4.993584 AGAACTAAGCAGTGACACTCAATG 59.006 41.667 4.74 0.00 44.42 2.82
3651 3983 5.220710 AGAACTAAGCAGTGACACTCAAT 57.779 39.130 4.74 0.00 34.36 2.57
3652 3984 4.672587 AGAACTAAGCAGTGACACTCAA 57.327 40.909 4.74 0.00 34.36 3.02
3662 3994 9.738832 GGAATAGTAAGAGTTAGAACTAAGCAG 57.261 37.037 0.00 0.00 39.88 4.24
3679 4011 5.057819 TGCACAACGACAAAGGAATAGTAA 58.942 37.500 0.00 0.00 0.00 2.24
3697 4032 5.614308 CATCTGTATATTTCTCCCTGCACA 58.386 41.667 0.00 0.00 0.00 4.57
3771 4106 2.721925 GAAGGTTTCGTCGAGGTCG 58.278 57.895 4.85 0.00 41.45 4.79
3840 4175 1.086696 TTGCTGCGCAGAAATACTCC 58.913 50.000 40.21 19.96 40.61 3.85
3864 4211 2.187946 CCCTCGGGACATGACAGC 59.812 66.667 0.00 0.00 37.50 4.40
3866 4213 2.348104 CGACCCTCGGGACATGACA 61.348 63.158 9.43 0.00 36.00 3.58
4010 4357 0.041663 CGCGGCTTCGAAGTTTTTCA 60.042 50.000 25.24 0.00 35.61 2.69
4035 4382 3.453070 GATCCAGTCCTCGGCCAGC 62.453 68.421 2.24 0.00 0.00 4.85
4036 4383 2.818132 GATCCAGTCCTCGGCCAG 59.182 66.667 2.24 0.00 0.00 4.85
4046 4393 1.599047 CCAGTGCCTTCGATCCAGT 59.401 57.895 0.00 0.00 0.00 4.00
4047 4394 1.153289 CCCAGTGCCTTCGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
4054 4401 4.785453 CCGAGCCCCAGTGCCTTC 62.785 72.222 0.00 0.00 0.00 3.46
4149 4496 1.671901 CCTCTTCCACCTCTCCGAGC 61.672 65.000 0.00 0.00 0.00 5.03
4174 4521 2.815211 CACCACCACGCCGATCTG 60.815 66.667 0.00 0.00 0.00 2.90
4188 4535 2.362120 ATGAGCAAGCCAGCCACC 60.362 61.111 0.00 0.00 34.23 4.61
4223 4570 2.512515 GCAGATCCGTGACCAGGC 60.513 66.667 0.00 0.00 0.00 4.85
4308 4663 5.480422 TCTGAACATGTCTGTGTACCTACAT 59.520 40.000 0.00 0.00 38.63 2.29
4309 4664 4.830600 TCTGAACATGTCTGTGTACCTACA 59.169 41.667 0.00 0.00 35.22 2.74
4310 4665 5.386958 TCTGAACATGTCTGTGTACCTAC 57.613 43.478 0.00 0.00 35.22 3.18
4311 4666 5.480422 ACATCTGAACATGTCTGTGTACCTA 59.520 40.000 0.00 0.00 35.22 3.08
4343 4698 1.342672 TTCGAGATGCCCTAACCCCC 61.343 60.000 0.00 0.00 0.00 5.40
4346 4701 0.175073 ACGTTCGAGATGCCCTAACC 59.825 55.000 0.00 0.00 0.00 2.85
4365 4720 0.106268 TGCCTGTTTTCAAGGCCAGA 60.106 50.000 5.01 0.00 40.67 3.86
4366 4721 0.032540 GTGCCTGTTTTCAAGGCCAG 59.967 55.000 5.01 0.00 40.67 4.85
4367 4722 0.396974 AGTGCCTGTTTTCAAGGCCA 60.397 50.000 5.01 0.00 40.67 5.36
4368 4723 0.752658 AAGTGCCTGTTTTCAAGGCC 59.247 50.000 11.72 0.00 40.67 5.19
4369 4724 1.408702 TGAAGTGCCTGTTTTCAAGGC 59.591 47.619 7.51 7.51 41.26 4.35
4370 4725 4.326504 AATGAAGTGCCTGTTTTCAAGG 57.673 40.909 0.00 0.00 34.80 3.61
4371 4726 5.111293 ACAAATGAAGTGCCTGTTTTCAAG 58.889 37.500 0.00 0.00 34.80 3.02
4372 4727 5.083533 ACAAATGAAGTGCCTGTTTTCAA 57.916 34.783 0.00 0.00 34.80 2.69
4373 4728 4.402155 AGACAAATGAAGTGCCTGTTTTCA 59.598 37.500 0.00 0.00 35.52 2.69
4374 4729 4.936891 AGACAAATGAAGTGCCTGTTTTC 58.063 39.130 0.00 0.00 0.00 2.29
4375 4730 5.343307 AAGACAAATGAAGTGCCTGTTTT 57.657 34.783 0.00 0.00 0.00 2.43
4376 4731 6.449698 CATAAGACAAATGAAGTGCCTGTTT 58.550 36.000 0.00 0.00 0.00 2.83
4377 4732 5.047802 CCATAAGACAAATGAAGTGCCTGTT 60.048 40.000 0.00 0.00 0.00 3.16
4378 4733 4.460382 CCATAAGACAAATGAAGTGCCTGT 59.540 41.667 0.00 0.00 0.00 4.00
4379 4734 4.701651 TCCATAAGACAAATGAAGTGCCTG 59.298 41.667 0.00 0.00 0.00 4.85
4380 4735 4.702131 GTCCATAAGACAAATGAAGTGCCT 59.298 41.667 0.00 0.00 45.55 4.75
4381 4736 4.986622 GTCCATAAGACAAATGAAGTGCC 58.013 43.478 0.00 0.00 45.55 5.01
4393 4748 4.184629 CCAGTTAGCACAGTCCATAAGAC 58.815 47.826 0.00 0.00 46.71 3.01
4394 4749 3.838317 ACCAGTTAGCACAGTCCATAAGA 59.162 43.478 0.00 0.00 0.00 2.10
4395 4750 3.935203 CACCAGTTAGCACAGTCCATAAG 59.065 47.826 0.00 0.00 0.00 1.73
4396 4751 3.307410 CCACCAGTTAGCACAGTCCATAA 60.307 47.826 0.00 0.00 0.00 1.90
4397 4752 2.236146 CCACCAGTTAGCACAGTCCATA 59.764 50.000 0.00 0.00 0.00 2.74
4398 4753 1.003580 CCACCAGTTAGCACAGTCCAT 59.996 52.381 0.00 0.00 0.00 3.41
4399 4754 0.396435 CCACCAGTTAGCACAGTCCA 59.604 55.000 0.00 0.00 0.00 4.02
4400 4755 0.396811 ACCACCAGTTAGCACAGTCC 59.603 55.000 0.00 0.00 0.00 3.85
4401 4756 2.256117 AACCACCAGTTAGCACAGTC 57.744 50.000 0.00 0.00 36.74 3.51
4409 4764 4.564821 GGATCTGTTGCTAACCACCAGTTA 60.565 45.833 0.00 0.00 40.05 2.24
4410 4765 3.412386 GATCTGTTGCTAACCACCAGTT 58.588 45.455 0.00 0.00 42.83 3.16
4469 4836 0.666274 TGCACAAGCTAGAACGACGG 60.666 55.000 0.00 0.00 42.74 4.79
4494 4867 7.505585 AGTGGAGTGGACAAAAATAAGATGAAA 59.494 33.333 0.00 0.00 0.00 2.69
4617 5015 2.029020 TCAGAGCGACTGTTTGTGCTAT 60.029 45.455 12.21 0.00 45.86 2.97
4853 5261 9.860898 GAAAAATTTCTTCTAATGTATGCACCT 57.139 29.630 0.00 0.00 34.41 4.00
4854 5262 9.638239 TGAAAAATTTCTTCTAATGTATGCACC 57.362 29.630 7.36 0.00 38.02 5.01
4926 5334 5.720371 TTTGATTGGACCGACAATTTGAT 57.280 34.783 2.79 0.00 40.92 2.57
4933 5341 2.546368 CGACTTTTTGATTGGACCGACA 59.454 45.455 0.00 0.00 0.00 4.35
4970 5379 1.003759 CGAAGGTCTCGTCGTGATAGG 60.004 57.143 0.00 0.00 42.89 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.