AutoCloner

Multiple sequence alignment - TraesCS1A01G185600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G185600	chr1A	100.000	2414	0	0	1	2414	336462958	336460545	0.000000e+00	4458.0
1	TraesCS1A01G185600	chr1A	80.593	675	112	17	1746	2414	92617149	92617810	9.960000e-139	503.0
2	TraesCS1A01G185600	chr4A	94.986	1416	70	1	1	1415	673968535	673967120	0.000000e+00	2220.0
3	TraesCS1A01G185600	chr3B	93.508	1186	69	1	257	1442	651412311	651411134	0.000000e+00	1757.0
4	TraesCS1A01G185600	chr7A	89.332	1078	112	3	1	1078	535584217	535585291	0.000000e+00	1351.0
5	TraesCS1A01G185600	chr7A	89.796	343	28	4	1105	1441	535585291	535585632	1.330000e-117	433.0
6	TraesCS1A01G185600	chr1D	86.644	599	73	5	1695	2292	262473370	262472778	0.000000e+00	656.0
7	TraesCS1A01G185600	chr1D	91.701	241	18	2	1445	1685	262473744	262473506	1.380000e-87	333.0
8	TraesCS1A01G185600	chr7D	82.388	670	107	8	1747	2414	549305523	549304863	7.490000e-160	573.0
9	TraesCS1A01G185600	chr7B	81.845	672	105	14	1747	2414	593415145	593414487	1.260000e-152	549.0
10	TraesCS1A01G185600	chr7B	80.323	681	115	18	1743	2414	454793497	454794167	4.630000e-137	497.0
11	TraesCS1A01G185600	chr3A	81.426	673	108	14	1746	2414	653905364	653904705	3.530000e-148	534.0
12	TraesCS1A01G185600	chr3A	74.468	470	98	13	980	1441	554073817	554073362	1.470000e-42	183.0
13	TraesCS1A01G185600	chr4D	81.399	672	107	11	1748	2412	480821228	480821888	1.270000e-147	532.0
14	TraesCS1A01G185600	chr6B	81.065	676	118	9	1746	2414	576037397	576038069	4.570000e-147	531.0
15	TraesCS1A01G185600	chr6B	92.308	117	9	0	1331	1447	609847059	609847175	1.480000e-37	167.0
16	TraesCS1A01G185600	chr2B	81.364	660	113	9	1760	2414	173201777	173201123	1.640000e-146	529.0
17	TraesCS1A01G185600	chr2B	72.404	1040	232	48	431	1442	92543749	92542737	1.830000e-71	279.0
18	TraesCS1A01G185600	chr2D	72.201	1036	238	42	431	1442	27822387	27821378	3.060000e-69	272.0
19	TraesCS1A01G185600	chr1B	90.370	135	13	0	1445	1579	348474535	348474401	6.860000e-41	178.0
20	TraesCS1A01G185600	chr1B	83.486	109	2	9	1649	1741	348474370	348474262	1.190000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G185600	chr1A	336460545	336462958	2413	True	4458.0	4458	100.0000	1	2414	1	chr1A.!!$R1	2413
1	TraesCS1A01G185600	chr1A	92617149	92617810	661	False	503.0	503	80.5930	1746	2414	1	chr1A.!!$F1	668
2	TraesCS1A01G185600	chr4A	673967120	673968535	1415	True	2220.0	2220	94.9860	1	1415	1	chr4A.!!$R1	1414
3	TraesCS1A01G185600	chr3B	651411134	651412311	1177	True	1757.0	1757	93.5080	257	1442	1	chr3B.!!$R1	1185
4	TraesCS1A01G185600	chr7A	535584217	535585632	1415	False	892.0	1351	89.5640	1	1441	2	chr7A.!!$F1	1440
5	TraesCS1A01G185600	chr1D	262472778	262473744	966	True	494.5	656	89.1725	1445	2292	2	chr1D.!!$R1	847
6	TraesCS1A01G185600	chr7D	549304863	549305523	660	True	573.0	573	82.3880	1747	2414	1	chr7D.!!$R1	667
7	TraesCS1A01G185600	chr7B	593414487	593415145	658	True	549.0	549	81.8450	1747	2414	1	chr7B.!!$R1	667
8	TraesCS1A01G185600	chr7B	454793497	454794167	670	False	497.0	497	80.3230	1743	2414	1	chr7B.!!$F1	671
9	TraesCS1A01G185600	chr3A	653904705	653905364	659	True	534.0	534	81.4260	1746	2414	1	chr3A.!!$R2	668
10	TraesCS1A01G185600	chr4D	480821228	480821888	660	False	532.0	532	81.3990	1748	2412	1	chr4D.!!$F1	664
11	TraesCS1A01G185600	chr6B	576037397	576038069	672	False	531.0	531	81.0650	1746	2414	1	chr6B.!!$F1	668
12	TraesCS1A01G185600	chr2B	173201123	173201777	654	True	529.0	529	81.3640	1760	2414	1	chr2B.!!$R2	654
13	TraesCS1A01G185600	chr2B	92542737	92543749	1012	True	279.0	279	72.4040	431	1442	1	chr2B.!!$R1	1011
14	TraesCS1A01G185600	chr2D	27821378	27822387	1009	True	272.0	272	72.2010	431	1442	1	chr2D.!!$R1	1011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
829	830	0.099613	CATACAGAGCTCAGCGTCGT	59.9	55.0	17.77	5.42	0.0	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2373	2539	1.352156	GATTCGGTCACGTGTGCCTC	61.352	60.0	16.51	9.16	41.85	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	3.359695	AGGGTATGTTATGGCGTGTTT	57.640	42.857	0.00	0.00	0.00	2.83
89	90	1.441729	CATGGATACCACGCGGACT	59.558	57.895	12.47	0.00	35.80	3.85
90	91	0.671796	CATGGATACCACGCGGACTA	59.328	55.000	12.47	0.00	35.80	2.59
147	148	4.615452	CGTCTTAACAGAGTAGCGGACTTT	60.615	45.833	0.00	0.00	39.06	2.66
178	179	4.658063	TCGTGGTAATTGGAGTTTGGATT	58.342	39.130	0.00	0.00	0.00	3.01
230	231	2.094234	TCGAGTCAATTCAGCGAATCCA	60.094	45.455	4.63	0.00	30.29	3.41
234	235	5.178252	CGAGTCAATTCAGCGAATCCATATT	59.822	40.000	4.63	0.00	30.29	1.28
290	291	3.305335	CCGTGGGAAAAGTCTGGAAATTG	60.305	47.826	0.00	0.00	0.00	2.32
293	294	3.966665	TGGGAAAAGTCTGGAAATTGCTT	59.033	39.130	0.00	0.00	0.00	3.91
324	325	5.047847	TCAGCGTATAGTTTTGCTATGTCC	58.952	41.667	0.00	0.00	40.41	4.02
338	339	4.923281	TGCTATGTCCGATCATAATGTTCG	59.077	41.667	0.00	0.00	38.79	3.95
349	350	7.088272	CGATCATAATGTTCGGTTATGTCCTA	58.912	38.462	0.00	0.00	39.44	2.94
363	364	6.097129	GGTTATGTCCTAGTGCTTCTAGTTCT	59.903	42.308	12.80	0.00	43.23	3.01
374	375	3.878778	CTTCTAGTTCTTCACCCCATGG	58.121	50.000	4.14	4.14	37.80	3.66
496	497	5.347364	GCAGAGAAGTTCAGAAGACACATAC	59.653	44.000	5.50	0.00	0.00	2.39
519	520	4.741185	CGTACGCATGGCTATTGTAAACTA	59.259	41.667	0.52	0.00	0.00	2.24
639	640	8.881262	CCAATTAGGGAGGATATTACTTGTACT	58.119	37.037	0.00	0.00	0.00	2.73
766	767	3.364549	CATGGCAAAACAATCCCTCCTA	58.635	45.455	0.00	0.00	0.00	2.94
829	830	0.099613	CATACAGAGCTCAGCGTCGT	59.900	55.000	17.77	5.42	0.00	4.34
939	940	2.757099	CCCAAGCCTCATGTGGGC	60.757	66.667	19.51	19.51	45.42	5.36
989	990	2.026822	ACAATTCTTCAGATGGCTCGGT	60.027	45.455	0.00	0.00	0.00	4.69
1029	1030	4.873746	TCGAGATGATAAAGGGGATGTC	57.126	45.455	0.00	0.00	0.00	3.06
1045	1046	3.944015	GGATGTCATCTTTGCAGCTTACT	59.056	43.478	12.54	0.00	0.00	2.24
1132	1133	1.414919	TGGCGGTTGAACACTCTAGTT	59.585	47.619	0.00	0.00	0.00	2.24
1143	1144	7.869016	TGAACACTCTAGTTCTACGATTTTG	57.131	36.000	8.13	0.00	46.19	2.44
1270	1272	8.801882	TGATAGGGTTGTTATTCCTGTTAAAG	57.198	34.615	0.00	0.00	32.46	1.85
1336	1338	2.381911	GGAGGGTCGGTGATAGTACAA	58.618	52.381	0.00	0.00	0.00	2.41
1474	1483	6.490040	AGCCTTGTTTGTCTATGTATTTGTGT	59.510	34.615	0.00	0.00	0.00	3.72
1483	1492	6.921307	TGTCTATGTATTTGTGTAGGTATGCG	59.079	38.462	0.00	0.00	0.00	4.73
1486	1495	4.185394	TGTATTTGTGTAGGTATGCGGTG	58.815	43.478	0.00	0.00	0.00	4.94
1501	1510	0.603569	CGGTGCGAGAGGCCTATATT	59.396	55.000	4.42	0.00	42.61	1.28
1503	1512	2.417719	GGTGCGAGAGGCCTATATTTG	58.582	52.381	4.42	0.00	42.61	2.32
1526	1535	2.398588	CCACCTGCTCCCTTAGATGTA	58.601	52.381	0.00	0.00	0.00	2.29
1532	1541	2.972713	TGCTCCCTTAGATGTATCACCC	59.027	50.000	0.00	0.00	0.00	4.61
1549	1558	3.930229	TCACCCGTGATTTTCGTAGAATG	59.070	43.478	0.00	0.00	36.68	2.67
1551	1560	4.390603	CACCCGTGATTTTCGTAGAATGAA	59.609	41.667	0.00	0.00	45.90	2.57
1554	1563	5.013236	CCGTGATTTTCGTAGAATGAAACG	58.987	41.667	0.00	0.00	45.90	3.60
1557	1566	6.671616	CGTGATTTTCGTAGAATGAAACGTAC	59.328	38.462	0.00	0.00	45.90	3.67
1577	1586	8.091385	ACGTACCACTACCTAAAATGAAAAAG	57.909	34.615	0.00	0.00	0.00	2.27
1580	1589	7.520451	ACCACTACCTAAAATGAAAAAGTCC	57.480	36.000	0.00	0.00	0.00	3.85
1585	1594	6.894339	ACCTAAAATGAAAAAGTCCACGAT	57.106	33.333	0.00	0.00	0.00	3.73
1614	1623	7.974501	GCAAGACAAAATGATCATCAGAGAAAT	59.025	33.333	9.06	0.00	0.00	2.17
1619	1628	6.710597	AAATGATCATCAGAGAAATGTGGG	57.289	37.500	9.06	0.00	0.00	4.61
1626	1635	1.938577	CAGAGAAATGTGGGCATCGAG	59.061	52.381	0.00	0.00	33.50	4.04
1693	1720	0.979665	CTCCAACCTCTCCTGAAGCA	59.020	55.000	0.00	0.00	0.00	3.91
1701	1836	3.259625	ACCTCTCCTGAAGCACTAACTTC	59.740	47.826	0.00	0.00	45.19	3.01
1726	1861	5.625251	CACATTAGCGCAATCAATAGATCC	58.375	41.667	11.47	0.00	31.90	3.36
1730	1865	1.461127	GCGCAATCAATAGATCCGGTC	59.539	52.381	0.30	0.00	31.90	4.79
1733	1868	3.070018	GCAATCAATAGATCCGGTCTGG	58.930	50.000	14.50	0.00	37.83	3.86
1807	1944	7.255590	CCAATTATATTTGGCCTCTACAACAGG	60.256	40.741	12.28	0.00	39.76	4.00
1862	2009	7.927629	CACATCCCAAATCAAAAAGAAGAAGAA	59.072	33.333	0.00	0.00	0.00	2.52
1863	2010	8.146412	ACATCCCAAATCAAAAAGAAGAAGAAG	58.854	33.333	0.00	0.00	0.00	2.85
1864	2011	7.896383	TCCCAAATCAAAAAGAAGAAGAAGA	57.104	32.000	0.00	0.00	0.00	2.87
1915	2070	9.114952	TGATTGATTCTTTGTAACTACAACACA	57.885	29.630	1.77	0.00	45.01	3.72
1922	2077	6.655848	TCTTTGTAACTACAACACAAACCACT	59.344	34.615	1.77	0.00	45.01	4.00
1935	2091	4.338118	CACAAACCACTACCAAGACAACAT	59.662	41.667	0.00	0.00	0.00	2.71
1936	2092	4.953579	ACAAACCACTACCAAGACAACATT	59.046	37.500	0.00	0.00	0.00	2.71
2010	2168	3.119209	AGCATCGTCATCGCTGATCATAT	60.119	43.478	0.00	0.00	35.57	1.78
2086	2244	2.901840	CCACTGCCACGCACAACT	60.902	61.111	0.00	0.00	33.79	3.16
2094	2252	3.403968	TGCCACGCACAACTAATTAAGA	58.596	40.909	0.00	0.00	31.71	2.10
2168	2328	4.431131	CCCCCACTTGCCGATGCT	62.431	66.667	0.00	0.00	38.71	3.79
2175	2335	2.282391	TTGCCGATGCTGCTGGTT	60.282	55.556	0.00	0.00	38.71	3.67
2195	2355	1.965083	CGAGTCACGAATCACGAAGT	58.035	50.000	0.00	0.00	44.64	3.01
2211	2371	4.806247	CACGAAGTAAAGTCCTCATCATCC	59.194	45.833	0.00	0.00	41.61	3.51
2221	2384	2.091610	TCCTCATCATCCCGAAGACTCT	60.092	50.000	0.00	0.00	0.00	3.24
2258	2421	1.489481	CTCAGACCTCAGCCACCATA	58.511	55.000	0.00	0.00	0.00	2.74
2316	2482	7.607607	TCAATATACTGACATGTCCCATAATGC	59.392	37.037	22.85	0.00	0.00	3.56
2322	2488	2.760092	ACATGTCCCATAATGCCAACAC	59.240	45.455	0.00	0.00	0.00	3.32
2373	2539	2.685364	CCACACGGGCGTAAATAGG	58.315	57.895	0.00	0.00	0.00	2.57
2383	2549	1.738030	GCGTAAATAGGAGGCACACGT	60.738	52.381	0.00	0.00	0.00	4.49

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	4.822896	GGCCCGTATATTTTCACCATTACA	59.177	41.667	0.00	0.00	0.00	2.41
89	90	9.555411	TCTTTGGCAATATAGGAGTATATGGTA	57.445	33.333	0.00	0.00	32.92	3.25
90	91	8.449423	TCTTTGGCAATATAGGAGTATATGGT	57.551	34.615	0.00	0.00	32.92	3.55
147	148	5.306937	ACTCCAATTACCACGATCATCCATA	59.693	40.000	0.00	0.00	0.00	2.74
230	231	1.476833	CCTGCTGCCGTGGGTAAATAT	60.477	52.381	0.00	0.00	0.00	1.28
234	235	2.925706	TCCTGCTGCCGTGGGTAA	60.926	61.111	0.00	0.00	0.00	2.85
290	291	9.422196	CAAAACTATACGCTGATTTAACTAAGC	57.578	33.333	0.00	0.00	0.00	3.09
293	294	8.712285	AGCAAAACTATACGCTGATTTAACTA	57.288	30.769	0.00	0.00	32.33	2.24
311	312	6.959361	ACATTATGATCGGACATAGCAAAAC	58.041	36.000	0.00	0.00	34.80	2.43
324	325	5.926542	AGGACATAACCGAACATTATGATCG	59.073	40.000	16.17	16.17	40.87	3.69
349	350	2.303311	GGGGTGAAGAACTAGAAGCACT	59.697	50.000	0.00	0.00	0.00	4.40
393	394	3.432608	GCACCAACGTACCCCATACTAAT	60.433	47.826	0.00	0.00	0.00	1.73
423	424	1.134848	TGCCAGGCAAAGTGTTTCAAC	60.135	47.619	13.33	0.00	34.76	3.18
496	497	3.554324	AGTTTACAATAGCCATGCGTACG	59.446	43.478	11.84	11.84	0.00	3.67
519	520	6.777782	AGAAGACTCTTTTTCCTGATCACAT	58.222	36.000	0.00	0.00	0.00	3.21
639	640	1.075212	TGGAGCAACCATTCATCACCA	59.925	47.619	0.00	0.00	44.64	4.17
766	767	4.373156	AAAAAGCACAGGACACCTCTAT	57.627	40.909	0.00	0.00	0.00	1.98
829	830	8.671028	GGCTTTACCTTTGATTATTTCGTCTAA	58.329	33.333	0.00	0.00	34.51	2.10
939	940	4.294232	CATCAGTAGACAACGCCATAGAG	58.706	47.826	0.00	0.00	0.00	2.43
989	990	2.092968	CGAAGGATCATTCCAGAACCCA	60.093	50.000	14.11	0.00	45.30	4.51
1045	1046	6.202570	GCTTCATTACAATGGAAAAGTTTGCA	59.797	34.615	0.23	0.23	42.66	4.08
1132	1133	4.923871	GTCTGACTGAAGCAAAATCGTAGA	59.076	41.667	0.00	0.00	45.75	2.59
1336	1338	2.200930	TTGCCCCAGCCAACATGT	59.799	55.556	0.00	0.00	38.69	3.21
1417	1426	4.370364	TTTTTGCGAAGAATCATAGGGC	57.630	40.909	0.00	0.00	0.00	5.19
1442	1451	7.341445	ACATAGACAAACAAGGCTAACAAAA	57.659	32.000	0.00	0.00	0.00	2.44
1443	1452	6.952773	ACATAGACAAACAAGGCTAACAAA	57.047	33.333	0.00	0.00	0.00	2.83
1474	1483	1.452953	CCTCTCGCACCGCATACCTA	61.453	60.000	0.00	0.00	0.00	3.08
1483	1492	2.417719	CAAATATAGGCCTCTCGCACC	58.582	52.381	9.68	0.00	40.31	5.01
1486	1495	1.946283	GCCCAAATATAGGCCTCTCGC	60.946	57.143	9.68	0.00	43.76	5.03
1503	1512	3.015145	TAAGGGAGCAGGTGGCCC	61.015	66.667	0.00	0.00	46.50	5.80
1532	1541	5.605327	ACGTTTCATTCTACGAAAATCACG	58.395	37.500	0.00	0.00	40.03	4.35
1542	1551	5.958955	AGGTAGTGGTACGTTTCATTCTAC	58.041	41.667	0.00	2.16	0.00	2.59
1545	1554	7.656707	TTTTAGGTAGTGGTACGTTTCATTC	57.343	36.000	0.00	0.00	0.00	2.67
1549	1558	7.656707	TTCATTTTAGGTAGTGGTACGTTTC	57.343	36.000	0.00	0.00	0.00	2.78
1551	1560	8.449251	TTTTTCATTTTAGGTAGTGGTACGTT	57.551	30.769	0.00	0.00	0.00	3.99
1554	1563	8.509690	GGACTTTTTCATTTTAGGTAGTGGTAC	58.490	37.037	0.00	0.00	0.00	3.34
1557	1566	7.368059	GTGGACTTTTTCATTTTAGGTAGTGG	58.632	38.462	0.00	0.00	0.00	4.00
1577	1586	1.565156	TTGTCTTGCGCATCGTGGAC	61.565	55.000	12.75	14.80	0.00	4.02
1580	1589	1.645265	CATTTTGTCTTGCGCATCGTG	59.355	47.619	12.75	2.03	0.00	4.35
1585	1594	3.190953	TGATGATCATTTTGTCTTGCGCA	59.809	39.130	5.66	5.66	0.00	6.09
1614	1623	1.375908	GTCTTGCTCGATGCCCACA	60.376	57.895	4.73	0.00	42.00	4.17
1619	1628	7.359598	CCTTTATATAACAGTCTTGCTCGATGC	60.360	40.741	0.00	0.00	43.25	3.91
1626	1635	5.050295	GGACGCCTTTATATAACAGTCTTGC	60.050	44.000	13.66	6.35	0.00	4.01
1631	1640	5.121105	GGTTGGACGCCTTTATATAACAGT	58.879	41.667	0.00	0.00	0.00	3.55
1701	1836	6.167670	GATCTATTGATTGCGCTAATGTGCG	61.168	44.000	9.73	8.04	44.83	5.34
1788	1925	4.919774	TTCCTGTTGTAGAGGCCAAATA	57.080	40.909	5.01	0.00	0.00	1.40
1792	1929	3.181434	ACATTTTCCTGTTGTAGAGGCCA	60.181	43.478	5.01	0.00	0.00	5.36
1862	2009	2.417515	GCGGGATCTTTCGTCTTCTTCT	60.418	50.000	0.00	0.00	0.00	2.85
1863	2010	1.927838	GCGGGATCTTTCGTCTTCTTC	59.072	52.381	0.00	0.00	0.00	2.87
1864	2011	1.550976	AGCGGGATCTTTCGTCTTCTT	59.449	47.619	0.00	0.00	0.00	2.52
1869	2019	2.510768	ATGTAGCGGGATCTTTCGTC	57.489	50.000	0.00	0.00	0.00	4.20
1908	2063	3.692593	GTCTTGGTAGTGGTTTGTGTTGT	59.307	43.478	0.00	0.00	0.00	3.32
1915	2070	4.274950	CGAATGTTGTCTTGGTAGTGGTTT	59.725	41.667	0.00	0.00	0.00	3.27
1922	2077	4.202274	TGGACTTCGAATGTTGTCTTGGTA	60.202	41.667	13.11	0.00	0.00	3.25
1935	2091	6.972328	CACTTTTGAAGAATTTGGACTTCGAA	59.028	34.615	0.00	0.00	43.46	3.71
1936	2092	6.317642	TCACTTTTGAAGAATTTGGACTTCGA	59.682	34.615	0.00	0.00	43.46	3.71
2010	2168	4.410883	TCTTCAGGGTGAAAACCTAAGACA	59.589	41.667	0.00	0.00	35.73	3.41
2078	2236	7.813852	AGTTCTAGTCTTAATTAGTTGTGCG	57.186	36.000	0.00	0.00	0.00	5.34
2094	2252	7.607615	TTAGGGTGTAAACTCAAGTTCTAGT	57.392	36.000	0.00	0.00	37.25	2.57
2168	2328	3.439008	TCGTGACTCGAACCAGCA	58.561	55.556	0.00	0.00	45.98	4.41
2191	2351	4.099573	TCGGGATGATGAGGACTTTACTTC	59.900	45.833	0.00	0.00	0.00	3.01
2195	2355	4.099573	GTCTTCGGGATGATGAGGACTTTA	59.900	45.833	0.00	0.00	37.98	1.85
2211	2371	4.585162	AGTAATGGTGGATAGAGTCTTCGG	59.415	45.833	0.00	0.00	0.00	4.30
2221	2384	4.140782	TCTGAGGCCTAGTAATGGTGGATA	60.141	45.833	4.42	0.00	0.00	2.59
2258	2421	4.508124	GTGAAGACAGTGACGAAGAATGTT	59.492	41.667	0.00	0.00	0.00	2.71
2316	2482	1.594518	CGAAGCTTCGTTGTGTGTTGG	60.595	52.381	34.97	7.83	45.09	3.77
2365	2531	2.928116	GTCACGTGTGCCTCCTATTTAC	59.072	50.000	16.51	0.00	0.00	2.01
2366	2532	2.093869	GGTCACGTGTGCCTCCTATTTA	60.094	50.000	16.51	0.00	0.00	1.40
2373	2539	1.352156	GATTCGGTCACGTGTGCCTC	61.352	60.000	16.51	9.16	41.85	4.70
2383	2549	1.613925	GGATCGGATGAGATTCGGTCA	59.386	52.381	0.00	0.00	35.93	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.