Multiple sequence alignment - TraesCS1A01G185400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G185400 chr1A 100.000 2741 0 0 1 2741 336215565 336212825 0.000000e+00 5062.0
1 TraesCS1A01G185400 chr1A 96.923 325 10 0 430 754 485019180 485019504 1.860000e-151 545.0
2 TraesCS1A01G185400 chr1A 96.353 329 12 0 426 754 485018805 485019133 2.400000e-150 542.0
3 TraesCS1A01G185400 chr1A 95.000 140 7 0 615 754 56168638 56168777 1.280000e-53 220.0
4 TraesCS1A01G185400 chr1A 77.551 196 35 7 2550 2740 513459818 513459627 2.890000e-20 110.0
5 TraesCS1A01G185400 chr1B 95.007 1522 39 13 758 2266 346403578 346402081 0.000000e+00 2355.0
6 TraesCS1A01G185400 chr1B 91.898 432 33 1 1 430 346404005 346403574 1.090000e-168 603.0
7 TraesCS1A01G185400 chr1B 82.422 256 30 6 2278 2524 346402104 346401855 2.770000e-50 209.0
8 TraesCS1A01G185400 chr1D 96.447 1323 36 4 758 2079 267340927 267342239 0.000000e+00 2172.0
9 TraesCS1A01G185400 chr1D 93.158 190 12 1 2078 2266 267342533 267342722 7.480000e-71 278.0
10 TraesCS1A01G185400 chr1D 86.486 259 20 9 2279 2528 267342700 267342952 1.250000e-68 270.0
11 TraesCS1A01G185400 chr1D 87.379 103 8 5 2639 2740 253521945 253522043 2.230000e-21 113.0
12 TraesCS1A01G185400 chr1D 81.343 134 16 8 2579 2706 221022240 221022370 1.740000e-17 100.0
13 TraesCS1A01G185400 chr4A 96.012 326 13 0 429 754 598728281 598727956 5.200000e-147 531.0
14 TraesCS1A01G185400 chr4A 93.093 333 15 2 423 754 6917389 6917714 5.310000e-132 481.0
15 TraesCS1A01G185400 chr5A 94.801 327 10 1 428 754 597791394 597791713 1.130000e-138 503.0
16 TraesCS1A01G185400 chr3A 95.156 289 14 0 428 716 634131730 634132018 8.950000e-125 457.0
17 TraesCS1A01G185400 chr3A 85.484 124 12 6 2619 2740 362207793 362207674 1.030000e-24 124.0
18 TraesCS1A01G185400 chr2B 97.872 188 4 0 429 616 216061856 216061669 2.630000e-85 326.0
19 TraesCS1A01G185400 chrUn 97.849 186 4 0 431 616 82640154 82640339 3.410000e-84 322.0
20 TraesCS1A01G185400 chrUn 95.000 140 7 0 615 754 184624152 184624291 1.280000e-53 220.0
21 TraesCS1A01G185400 chrUn 95.000 140 7 0 615 754 184638656 184638795 1.280000e-53 220.0
22 TraesCS1A01G185400 chr7A 97.849 186 4 0 431 616 85721482 85721297 3.410000e-84 322.0
23 TraesCS1A01G185400 chr7D 88.542 96 11 0 2635 2730 619071438 619071343 1.720000e-22 117.0
24 TraesCS1A01G185400 chr3D 84.483 116 15 1 2618 2730 577148413 577148298 8.020000e-21 111.0
25 TraesCS1A01G185400 chr3D 78.523 149 26 5 2586 2729 377194787 377194934 2.910000e-15 93.5
26 TraesCS1A01G185400 chr2D 77.005 187 40 3 2541 2725 13479842 13480027 1.340000e-18 104.0
27 TraesCS1A01G185400 chr7B 78.313 166 27 7 2533 2693 463850768 463850929 6.250000e-17 99.0
28 TraesCS1A01G185400 chr7B 84.932 73 10 1 242 313 97197935 97198007 3.790000e-09 73.1
29 TraesCS1A01G185400 chr4D 84.127 63 7 3 2467 2528 6666734 6666674 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G185400 chr1A 336212825 336215565 2740 True 5062.000000 5062 100.000000 1 2741 1 chr1A.!!$R1 2740
1 TraesCS1A01G185400 chr1A 485018805 485019504 699 False 543.500000 545 96.638000 426 754 2 chr1A.!!$F2 328
2 TraesCS1A01G185400 chr1B 346401855 346404005 2150 True 1055.666667 2355 89.775667 1 2524 3 chr1B.!!$R1 2523
3 TraesCS1A01G185400 chr1D 267340927 267342952 2025 False 906.666667 2172 92.030333 758 2528 3 chr1D.!!$F3 1770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 556 0.337428 TAGTCCCTAGTCACCCCACC 59.663 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2955 0.110295 TGCCAGCACCTTAGCTTCAA 59.89 50.0 0.0 0.0 43.7 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.389516 GCTTACAACAGTCAACCAAGTATCG 60.390 44.000 0.00 0.00 0.00 2.92
159 160 1.662517 ATTGTCCGCATATCGCAACA 58.337 45.000 0.00 0.00 42.60 3.33
194 195 4.993029 TTACCAAATAAAATCCTGCCCG 57.007 40.909 0.00 0.00 0.00 6.13
195 196 2.815158 ACCAAATAAAATCCTGCCCGT 58.185 42.857 0.00 0.00 0.00 5.28
213 214 4.498009 GCCCGTGATTTATCTGACCAAATG 60.498 45.833 4.34 0.00 0.00 2.32
337 340 8.281194 CAGATAAGACGATCATGAATGGAAAAG 58.719 37.037 0.00 0.00 0.00 2.27
340 343 7.636150 AAGACGATCATGAATGGAAAAGAAT 57.364 32.000 0.00 0.00 0.00 2.40
344 347 8.737168 ACGATCATGAATGGAAAAGAATAGAA 57.263 30.769 0.00 0.00 0.00 2.10
371 374 9.880157 ATTTTTGAATTGAGTCCTATGAAATGG 57.120 29.630 0.00 0.00 0.00 3.16
375 378 8.648698 TGAATTGAGTCCTATGAAATGGAAAA 57.351 30.769 0.00 0.00 33.72 2.29
384 387 6.712095 TCCTATGAAATGGAAAAGATGATCGG 59.288 38.462 0.00 0.00 0.00 4.18
403 406 2.321333 TGCATTGTACGGTGCGTGG 61.321 57.895 14.95 0.00 44.11 4.94
412 415 1.511043 CGGTGCGTGGTTAAATGCG 60.511 57.895 0.00 0.00 34.66 4.73
419 422 1.268032 CGTGGTTAAATGCGGATCAGC 60.268 52.381 11.23 11.23 37.71 4.26
450 453 4.684724 AGAGGGTGTTTGGATCACTAGTA 58.315 43.478 0.00 0.00 36.25 1.82
553 556 0.337428 TAGTCCCTAGTCACCCCACC 59.663 60.000 0.00 0.00 0.00 4.61
583 586 8.252624 ACTAAAAGTGACTAAAGTCTCTCCTT 57.747 34.615 13.45 12.17 44.99 3.36
645 1019 6.553100 GGGAGAGAAGAGAGATAAATGGAAGA 59.447 42.308 0.00 0.00 0.00 2.87
646 1020 7.070571 GGGAGAGAAGAGAGATAAATGGAAGAA 59.929 40.741 0.00 0.00 0.00 2.52
655 1029 9.883142 GAGAGATAAATGGAAGAAAGAGAGAAA 57.117 33.333 0.00 0.00 0.00 2.52
716 1090 2.025887 CACCTTCTAAACAGGGCCTGAT 60.026 50.000 38.99 26.17 35.46 2.90
733 1107 8.168058 AGGGCCTGATTAAAAACTTTTAGTCTA 58.832 33.333 4.50 5.11 39.02 2.59
754 1128 9.122779 AGTCTAACTATTACTAGTCACATGACC 57.877 37.037 8.41 0.00 45.85 4.02
755 1129 8.351461 GTCTAACTATTACTAGTCACATGACCC 58.649 40.741 8.41 0.00 45.85 4.46
756 1130 8.280084 TCTAACTATTACTAGTCACATGACCCT 58.720 37.037 8.41 0.00 45.85 4.34
757 1131 6.963083 ACTATTACTAGTCACATGACCCTC 57.037 41.667 8.41 0.00 45.85 4.30
758 1132 6.674573 ACTATTACTAGTCACATGACCCTCT 58.325 40.000 8.41 0.00 45.85 3.69
759 1133 7.126733 ACTATTACTAGTCACATGACCCTCTT 58.873 38.462 8.41 0.00 45.85 2.85
760 1134 8.280084 ACTATTACTAGTCACATGACCCTCTTA 58.720 37.037 8.41 0.00 45.85 2.10
761 1135 7.973048 ATTACTAGTCACATGACCCTCTTAA 57.027 36.000 8.41 1.22 45.85 1.85
803 1177 2.016961 CATCGGATTGCTTCCACGG 58.983 57.895 7.00 0.00 45.78 4.94
810 1184 2.296190 GGATTGCTTCCACGGAAAAACT 59.704 45.455 0.00 0.00 44.74 2.66
811 1185 3.504520 GGATTGCTTCCACGGAAAAACTA 59.495 43.478 0.00 0.00 44.74 2.24
812 1186 4.022676 GGATTGCTTCCACGGAAAAACTAA 60.023 41.667 0.00 0.00 44.74 2.24
813 1187 4.985538 TTGCTTCCACGGAAAAACTAAA 57.014 36.364 0.00 0.00 33.34 1.85
814 1188 4.985538 TGCTTCCACGGAAAAACTAAAA 57.014 36.364 0.00 0.00 33.34 1.52
815 1189 4.674475 TGCTTCCACGGAAAAACTAAAAC 58.326 39.130 0.00 0.00 33.34 2.43
816 1190 4.399934 TGCTTCCACGGAAAAACTAAAACT 59.600 37.500 0.00 0.00 33.34 2.66
895 1269 6.545504 TTTCTCATTTTTCTCTTCACTCCG 57.454 37.500 0.00 0.00 0.00 4.63
1281 1655 1.658686 CCTCCTCGTTCTCACCCTCG 61.659 65.000 0.00 0.00 0.00 4.63
1470 1844 4.459089 GTGGAGGAGAGCGTGGCC 62.459 72.222 0.00 0.00 0.00 5.36
1597 1971 1.374252 CGGTTCCTGTCCCTCAACG 60.374 63.158 0.00 0.00 0.00 4.10
1653 2027 0.825840 CCGAGATCTGGGAGGAGGTC 60.826 65.000 18.45 0.00 0.00 3.85
1774 2148 2.206536 CCCCAACCACGGCATTGTT 61.207 57.895 0.00 0.00 0.00 2.83
1778 2152 2.914908 AACCACGGCATTGTTCGGC 61.915 57.895 6.52 0.00 0.00 5.54
1864 2248 2.363306 TGGTGAGTTCTTGGTGCATT 57.637 45.000 0.00 0.00 0.00 3.56
1865 2249 2.229792 TGGTGAGTTCTTGGTGCATTC 58.770 47.619 0.00 0.00 0.00 2.67
1866 2250 2.229792 GGTGAGTTCTTGGTGCATTCA 58.770 47.619 0.00 0.00 0.00 2.57
1867 2251 2.821969 GGTGAGTTCTTGGTGCATTCAT 59.178 45.455 0.00 0.00 0.00 2.57
2021 2405 2.704725 TTGCCAGAAATTCAGCGTTC 57.295 45.000 0.00 0.00 0.00 3.95
2022 2406 1.896220 TGCCAGAAATTCAGCGTTCT 58.104 45.000 0.00 0.00 34.37 3.01
2044 2429 0.321034 GTACGAAAGGGGGAAAGCGT 60.321 55.000 0.00 0.00 35.95 5.07
2132 2812 0.652592 CGATAGGAACAGGCAAAGCG 59.347 55.000 0.00 0.00 0.00 4.68
2179 2859 1.811679 GCTAGGCTGCTCGTTGGTC 60.812 63.158 0.00 0.00 0.00 4.02
2192 2872 0.865769 GTTGGTCGTGGTAGTGCTTG 59.134 55.000 0.00 0.00 0.00 4.01
2206 2887 7.065443 GTGGTAGTGCTTGGTTAATTAAGTAGG 59.935 40.741 0.00 0.00 0.00 3.18
2259 2941 4.700692 CGATAGAACTATAGGTGCTGGCTA 59.299 45.833 4.43 0.00 34.06 3.93
2260 2942 5.163703 CGATAGAACTATAGGTGCTGGCTAG 60.164 48.000 4.43 0.00 34.06 3.42
2261 2943 8.543145 CGATAGAACTATAGGTGCTGGCTAGC 62.543 50.000 16.23 16.23 45.46 3.42
2291 2973 1.247567 TTTGAAGCTAAGGTGCTGGC 58.752 50.000 0.00 0.00 43.24 4.85
2292 2974 0.110295 TTGAAGCTAAGGTGCTGGCA 59.890 50.000 0.00 0.00 43.24 4.92
2349 3031 2.125912 GTCGACCTCAGCACGCAT 60.126 61.111 3.51 0.00 0.00 4.73
2350 3032 2.125952 TCGACCTCAGCACGCATG 60.126 61.111 0.00 0.00 0.00 4.06
2397 3087 3.965660 GGATAACCTCCGGCCTCA 58.034 61.111 0.00 0.00 33.29 3.86
2409 3099 2.105134 TCCGGCCTCAGAAGTGTTTTTA 59.895 45.455 0.00 0.00 0.00 1.52
2418 3108 7.091443 CCTCAGAAGTGTTTTTACTCTACGAT 58.909 38.462 0.00 0.00 0.00 3.73
2440 3130 3.703001 ACATCTTCAACACCGATCCTT 57.297 42.857 0.00 0.00 0.00 3.36
2448 3138 3.257873 TCAACACCGATCCTTAAACCGTA 59.742 43.478 0.00 0.00 0.00 4.02
2490 3180 0.598942 TCCGGACGTGTTGTGTCATG 60.599 55.000 0.00 0.00 38.10 3.07
2541 3231 2.269241 CGGAGGGAGGGTCTTTGC 59.731 66.667 0.00 0.00 0.00 3.68
2542 3232 2.269241 GGAGGGAGGGTCTTTGCG 59.731 66.667 0.00 0.00 0.00 4.85
2543 3233 2.269241 GAGGGAGGGTCTTTGCGG 59.731 66.667 0.00 0.00 0.00 5.69
2544 3234 3.330720 AGGGAGGGTCTTTGCGGG 61.331 66.667 0.00 0.00 0.00 6.13
2547 3237 4.699522 GAGGGTCTTTGCGGGCGT 62.700 66.667 0.00 0.00 0.00 5.68
2548 3238 3.305177 GAGGGTCTTTGCGGGCGTA 62.305 63.158 0.00 0.00 0.00 4.42
2549 3239 2.124860 GGGTCTTTGCGGGCGTAT 60.125 61.111 0.00 0.00 0.00 3.06
2550 3240 2.469516 GGGTCTTTGCGGGCGTATG 61.470 63.158 0.00 0.00 0.00 2.39
2551 3241 2.469516 GGTCTTTGCGGGCGTATGG 61.470 63.158 0.00 0.00 0.00 2.74
2552 3242 1.448893 GTCTTTGCGGGCGTATGGA 60.449 57.895 0.00 0.00 0.00 3.41
2553 3243 1.448893 TCTTTGCGGGCGTATGGAC 60.449 57.895 0.00 0.00 0.00 4.02
2554 3244 2.437002 TTTGCGGGCGTATGGACC 60.437 61.111 0.00 0.00 42.29 4.46
2559 3249 3.199891 GGGCGTATGGACCGTTGC 61.200 66.667 0.00 0.00 30.64 4.17
2560 3250 3.199891 GGCGTATGGACCGTTGCC 61.200 66.667 12.43 12.43 35.04 4.52
2561 3251 2.435234 GCGTATGGACCGTTGCCA 60.435 61.111 0.00 0.00 40.24 4.92
2562 3252 2.746803 GCGTATGGACCGTTGCCAC 61.747 63.158 0.00 0.00 38.44 5.01
2563 3253 2.449525 CGTATGGACCGTTGCCACG 61.450 63.158 2.82 2.82 46.71 4.94
2564 3254 2.435234 TATGGACCGTTGCCACGC 60.435 61.111 4.52 0.00 45.72 5.34
2565 3255 3.961838 TATGGACCGTTGCCACGCC 62.962 63.158 4.52 2.40 45.72 5.68
2585 3275 2.770699 CGTTCCGGACTACCATAGAC 57.229 55.000 1.83 0.00 35.59 2.59
2586 3276 1.336125 CGTTCCGGACTACCATAGACC 59.664 57.143 1.83 0.00 37.29 3.85
2587 3277 2.381911 GTTCCGGACTACCATAGACCA 58.618 52.381 1.83 0.00 40.03 4.02
2588 3278 2.062971 TCCGGACTACCATAGACCAC 57.937 55.000 0.00 0.00 40.03 4.16
2589 3279 1.038280 CCGGACTACCATAGACCACC 58.962 60.000 0.00 0.00 40.03 4.61
2590 3280 1.687054 CCGGACTACCATAGACCACCA 60.687 57.143 0.00 0.00 40.03 4.17
2591 3281 2.104967 CGGACTACCATAGACCACCAA 58.895 52.381 5.44 0.00 40.03 3.67
2592 3282 2.498481 CGGACTACCATAGACCACCAAA 59.502 50.000 5.44 0.00 40.03 3.28
2593 3283 3.055675 CGGACTACCATAGACCACCAAAA 60.056 47.826 5.44 0.00 40.03 2.44
2594 3284 4.563993 CGGACTACCATAGACCACCAAAAA 60.564 45.833 5.44 0.00 40.03 1.94
2595 3285 4.698780 GGACTACCATAGACCACCAAAAAC 59.301 45.833 0.29 0.00 39.84 2.43
2596 3286 4.659115 ACTACCATAGACCACCAAAAACC 58.341 43.478 0.00 0.00 0.00 3.27
2597 3287 2.884320 ACCATAGACCACCAAAAACCC 58.116 47.619 0.00 0.00 0.00 4.11
2598 3288 2.449345 ACCATAGACCACCAAAAACCCT 59.551 45.455 0.00 0.00 0.00 4.34
2599 3289 3.089284 CCATAGACCACCAAAAACCCTC 58.911 50.000 0.00 0.00 0.00 4.30
2600 3290 3.499563 CCATAGACCACCAAAAACCCTCA 60.500 47.826 0.00 0.00 0.00 3.86
2601 3291 2.067365 AGACCACCAAAAACCCTCAC 57.933 50.000 0.00 0.00 0.00 3.51
2602 3292 1.037493 GACCACCAAAAACCCTCACC 58.963 55.000 0.00 0.00 0.00 4.02
2603 3293 0.397957 ACCACCAAAAACCCTCACCC 60.398 55.000 0.00 0.00 0.00 4.61
2604 3294 1.118965 CCACCAAAAACCCTCACCCC 61.119 60.000 0.00 0.00 0.00 4.95
2605 3295 0.105709 CACCAAAAACCCTCACCCCT 60.106 55.000 0.00 0.00 0.00 4.79
2606 3296 0.187606 ACCAAAAACCCTCACCCCTC 59.812 55.000 0.00 0.00 0.00 4.30
2607 3297 0.482887 CCAAAAACCCTCACCCCTCT 59.517 55.000 0.00 0.00 0.00 3.69
2608 3298 1.547901 CCAAAAACCCTCACCCCTCTC 60.548 57.143 0.00 0.00 0.00 3.20
2609 3299 0.778083 AAAAACCCTCACCCCTCTCC 59.222 55.000 0.00 0.00 0.00 3.71
2610 3300 0.402861 AAAACCCTCACCCCTCTCCA 60.403 55.000 0.00 0.00 0.00 3.86
2611 3301 0.842467 AAACCCTCACCCCTCTCCAG 60.842 60.000 0.00 0.00 0.00 3.86
2612 3302 2.049792 AACCCTCACCCCTCTCCAGT 62.050 60.000 0.00 0.00 0.00 4.00
2613 3303 1.992277 CCCTCACCCCTCTCCAGTG 60.992 68.421 0.00 0.00 0.00 3.66
2614 3304 1.229336 CCTCACCCCTCTCCAGTGT 60.229 63.158 0.00 0.00 33.21 3.55
2615 3305 1.548357 CCTCACCCCTCTCCAGTGTG 61.548 65.000 0.00 0.00 33.21 3.82
2616 3306 0.833834 CTCACCCCTCTCCAGTGTGT 60.834 60.000 0.00 0.00 33.21 3.72
2617 3307 1.121407 TCACCCCTCTCCAGTGTGTG 61.121 60.000 0.00 0.00 33.21 3.82
2618 3308 1.074471 ACCCCTCTCCAGTGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
2619 3309 0.694444 ACCCCTCTCCAGTGTGTGTT 60.694 55.000 0.00 0.00 0.00 3.32
2620 3310 0.035458 CCCCTCTCCAGTGTGTGTTC 59.965 60.000 0.00 0.00 0.00 3.18
2621 3311 0.035458 CCCTCTCCAGTGTGTGTTCC 59.965 60.000 0.00 0.00 0.00 3.62
2622 3312 1.051812 CCTCTCCAGTGTGTGTTCCT 58.948 55.000 0.00 0.00 0.00 3.36
2623 3313 1.270518 CCTCTCCAGTGTGTGTTCCTG 60.271 57.143 0.00 0.00 0.00 3.86
2624 3314 1.414181 CTCTCCAGTGTGTGTTCCTGT 59.586 52.381 0.00 0.00 0.00 4.00
2625 3315 1.412710 TCTCCAGTGTGTGTTCCTGTC 59.587 52.381 0.00 0.00 0.00 3.51
2626 3316 0.468226 TCCAGTGTGTGTTCCTGTCC 59.532 55.000 0.00 0.00 0.00 4.02
2627 3317 0.180171 CCAGTGTGTGTTCCTGTCCA 59.820 55.000 0.00 0.00 0.00 4.02
2628 3318 1.586422 CAGTGTGTGTTCCTGTCCAG 58.414 55.000 0.00 0.00 0.00 3.86
2629 3319 0.179045 AGTGTGTGTTCCTGTCCAGC 60.179 55.000 0.00 0.00 0.00 4.85
2630 3320 0.463654 GTGTGTGTTCCTGTCCAGCA 60.464 55.000 0.00 0.00 0.00 4.41
2631 3321 0.473755 TGTGTGTTCCTGTCCAGCAT 59.526 50.000 0.00 0.00 0.00 3.79
2632 3322 1.160137 GTGTGTTCCTGTCCAGCATC 58.840 55.000 0.00 0.00 0.00 3.91
2633 3323 0.764271 TGTGTTCCTGTCCAGCATCA 59.236 50.000 0.00 0.00 0.00 3.07
2634 3324 1.271001 TGTGTTCCTGTCCAGCATCAG 60.271 52.381 0.00 0.00 0.00 2.90
2635 3325 0.321919 TGTTCCTGTCCAGCATCAGC 60.322 55.000 0.00 0.00 42.56 4.26
2636 3326 1.028868 GTTCCTGTCCAGCATCAGCC 61.029 60.000 0.00 0.00 43.56 4.85
2637 3327 2.124403 CCTGTCCAGCATCAGCCC 60.124 66.667 0.00 0.00 43.56 5.19
2638 3328 2.513204 CTGTCCAGCATCAGCCCG 60.513 66.667 0.00 0.00 43.56 6.13
2639 3329 4.783621 TGTCCAGCATCAGCCCGC 62.784 66.667 0.00 0.00 43.56 6.13
2640 3330 4.783621 GTCCAGCATCAGCCCGCA 62.784 66.667 0.00 0.00 43.56 5.69
2641 3331 3.800833 TCCAGCATCAGCCCGCAT 61.801 61.111 0.00 0.00 43.56 4.73
2642 3332 2.831742 CCAGCATCAGCCCGCATT 60.832 61.111 0.00 0.00 43.56 3.56
2643 3333 2.719979 CAGCATCAGCCCGCATTC 59.280 61.111 0.00 0.00 43.56 2.67
2644 3334 2.116533 CAGCATCAGCCCGCATTCA 61.117 57.895 0.00 0.00 43.56 2.57
2645 3335 1.152819 AGCATCAGCCCGCATTCAT 60.153 52.632 0.00 0.00 43.56 2.57
2646 3336 1.007734 GCATCAGCCCGCATTCATG 60.008 57.895 0.00 0.00 33.58 3.07
2658 3348 2.744787 CATTCATGCCGTTGTAGAGC 57.255 50.000 0.00 0.00 0.00 4.09
2659 3349 1.004610 CATTCATGCCGTTGTAGAGCG 60.005 52.381 0.00 0.00 0.00 5.03
2685 3375 3.869272 GCATTGACGCCGGCTCAG 61.869 66.667 26.68 12.04 0.00 3.35
2686 3376 2.125552 CATTGACGCCGGCTCAGA 60.126 61.111 26.68 16.23 0.00 3.27
2687 3377 2.169789 CATTGACGCCGGCTCAGAG 61.170 63.158 26.68 17.18 0.00 3.35
2688 3378 4.742201 TTGACGCCGGCTCAGAGC 62.742 66.667 26.68 14.69 41.46 4.09
2705 3395 3.432588 CGGACGCGACCTCTCACT 61.433 66.667 24.38 0.00 0.00 3.41
2706 3396 2.963371 GGACGCGACCTCTCACTT 59.037 61.111 20.46 0.00 0.00 3.16
2707 3397 1.444553 GGACGCGACCTCTCACTTG 60.445 63.158 20.46 0.00 0.00 3.16
2708 3398 2.049063 ACGCGACCTCTCACTTGC 60.049 61.111 15.93 0.00 0.00 4.01
2709 3399 2.049156 CGCGACCTCTCACTTGCA 60.049 61.111 0.00 0.00 0.00 4.08
2710 3400 2.375766 CGCGACCTCTCACTTGCAC 61.376 63.158 0.00 0.00 0.00 4.57
2711 3401 2.029844 GCGACCTCTCACTTGCACC 61.030 63.158 0.00 0.00 0.00 5.01
2712 3402 1.734477 CGACCTCTCACTTGCACCG 60.734 63.158 0.00 0.00 0.00 4.94
2713 3403 1.374758 GACCTCTCACTTGCACCGG 60.375 63.158 0.00 0.00 0.00 5.28
2714 3404 2.100879 GACCTCTCACTTGCACCGGT 62.101 60.000 0.00 0.00 0.00 5.28
2715 3405 1.669115 CCTCTCACTTGCACCGGTG 60.669 63.158 30.66 30.66 35.06 4.94
2716 3406 1.069765 CTCTCACTTGCACCGGTGT 59.930 57.895 33.92 13.26 35.26 4.16
2717 3407 0.532862 CTCTCACTTGCACCGGTGTT 60.533 55.000 33.92 14.63 35.26 3.32
2718 3408 0.813610 TCTCACTTGCACCGGTGTTG 60.814 55.000 33.92 24.71 35.26 3.33
2719 3409 0.813610 CTCACTTGCACCGGTGTTGA 60.814 55.000 33.92 26.46 35.26 3.18
2720 3410 0.393132 TCACTTGCACCGGTGTTGAA 60.393 50.000 33.92 22.29 35.26 2.69
2721 3411 0.029300 CACTTGCACCGGTGTTGAAG 59.971 55.000 33.92 30.12 0.00 3.02
2722 3412 1.008538 CTTGCACCGGTGTTGAAGC 60.009 57.895 33.92 20.05 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.905702 GTTGACTGTTGTAAGCTTCAAATATTG 58.094 33.333 0.00 0.59 0.00 1.90
41 42 5.641783 ATTAATTTGCACCATTTTTGGGC 57.358 34.783 0.00 0.00 0.00 5.36
87 88 6.359804 ATGTATAGACATTGGCATGTTGTCT 58.640 36.000 23.16 23.16 44.18 3.41
243 244 8.643324 TGGTAAGCCAACAAATGTTTACTAAAT 58.357 29.630 0.00 0.00 42.83 1.40
314 317 8.737168 TTCTTTTCCATTCATGATCGTCTTAT 57.263 30.769 0.00 0.00 0.00 1.73
371 374 4.361451 ACAATGCACCGATCATCTTTTC 57.639 40.909 0.00 0.00 0.00 2.29
375 378 2.473816 CGTACAATGCACCGATCATCT 58.526 47.619 0.00 0.00 0.00 2.90
384 387 1.154488 CACGCACCGTACAATGCAC 60.154 57.895 16.23 0.00 42.17 4.57
419 422 2.489329 CCAAACACCCTCTAAGCACATG 59.511 50.000 0.00 0.00 0.00 3.21
420 423 2.375174 TCCAAACACCCTCTAAGCACAT 59.625 45.455 0.00 0.00 0.00 3.21
450 453 9.927081 ACTACTACTAGTCTCTAGTCTCTAGTT 57.073 37.037 19.59 11.21 41.78 2.24
553 556 6.555812 GACTTTAGTCACTTTTAGTTGGGG 57.444 41.667 5.04 0.00 44.18 4.96
583 586 2.160721 TGGGCCCGCCAATTAATTAA 57.839 45.000 19.37 0.00 37.98 1.40
702 1076 6.987403 AAGTTTTTAATCAGGCCCTGTTTA 57.013 33.333 11.27 10.38 32.61 2.01
733 1107 7.126733 AGAGGGTCATGTGACTAGTAATAGTT 58.873 38.462 12.43 0.00 44.20 2.24
754 1128 4.243270 ACGGTCAGACGAAAATTAAGAGG 58.757 43.478 0.00 0.00 37.61 3.69
755 1129 5.840940 AACGGTCAGACGAAAATTAAGAG 57.159 39.130 0.00 0.00 37.61 2.85
756 1130 5.754406 TGAAACGGTCAGACGAAAATTAAGA 59.246 36.000 0.00 0.00 37.61 2.10
757 1131 5.844396 GTGAAACGGTCAGACGAAAATTAAG 59.156 40.000 0.00 0.00 36.74 1.85
758 1132 5.277442 GGTGAAACGGTCAGACGAAAATTAA 60.277 40.000 0.00 0.00 36.74 1.40
759 1133 4.211794 GGTGAAACGGTCAGACGAAAATTA 59.788 41.667 0.00 0.00 36.74 1.40
760 1134 3.002965 GGTGAAACGGTCAGACGAAAATT 59.997 43.478 0.00 0.00 36.74 1.82
761 1135 2.546789 GGTGAAACGGTCAGACGAAAAT 59.453 45.455 0.00 0.00 36.74 1.82
811 1185 7.753580 GCAAAGTCAAACGGCTATATTAGTTTT 59.246 33.333 0.00 0.00 34.97 2.43
812 1186 7.094549 TGCAAAGTCAAACGGCTATATTAGTTT 60.095 33.333 0.00 0.00 37.29 2.66
813 1187 6.373216 TGCAAAGTCAAACGGCTATATTAGTT 59.627 34.615 0.00 0.00 0.00 2.24
814 1188 5.878116 TGCAAAGTCAAACGGCTATATTAGT 59.122 36.000 0.00 0.00 0.00 2.24
815 1189 6.358118 TGCAAAGTCAAACGGCTATATTAG 57.642 37.500 0.00 0.00 0.00 1.73
816 1190 6.183360 CCTTGCAAAGTCAAACGGCTATATTA 60.183 38.462 0.00 0.00 44.25 0.98
895 1269 0.608640 AGCTGCTGGTGTGTACTACC 59.391 55.000 0.00 11.52 38.71 3.18
1470 1844 2.432628 GCCGACTCCTTCACCACG 60.433 66.667 0.00 0.00 0.00 4.94
1653 2027 2.024871 CGCTCGTAGCCGGAGAAG 59.975 66.667 5.05 0.00 38.18 2.85
1725 2099 0.537188 TCAGTCAGCGGAGGGAATTC 59.463 55.000 0.00 0.00 0.00 2.17
1778 2152 0.600255 GGTATTGGATCCACGGAGCG 60.600 60.000 15.91 0.00 0.00 5.03
1864 2248 4.202315 TGTGAAGTCGAAGAAAGGGAATGA 60.202 41.667 0.00 0.00 39.69 2.57
1865 2249 4.065088 TGTGAAGTCGAAGAAAGGGAATG 58.935 43.478 0.00 0.00 39.69 2.67
1866 2250 4.351874 TGTGAAGTCGAAGAAAGGGAAT 57.648 40.909 0.00 0.00 39.69 3.01
1867 2251 3.830744 TGTGAAGTCGAAGAAAGGGAA 57.169 42.857 0.00 0.00 39.69 3.97
2021 2405 2.433436 CTTTCCCCCTTTCGTACCAAG 58.567 52.381 0.00 0.00 0.00 3.61
2022 2406 1.546099 GCTTTCCCCCTTTCGTACCAA 60.546 52.381 0.00 0.00 0.00 3.67
2044 2429 0.687354 GGACTGTGGAGAGAAGGCAA 59.313 55.000 0.00 0.00 0.00 4.52
2123 2803 1.515521 CGGTTTCCTTCGCTTTGCCT 61.516 55.000 0.00 0.00 0.00 4.75
2132 2812 0.446616 GAATCACGGCGGTTTCCTTC 59.553 55.000 13.24 1.60 0.00 3.46
2179 2859 5.410439 ACTTAATTAACCAAGCACTACCACG 59.590 40.000 0.00 0.00 0.00 4.94
2206 2887 9.028185 GGAATTCTGCATCTACAATTTCATTTC 57.972 33.333 5.23 0.00 0.00 2.17
2217 2898 7.093354 TCTATCGATTGGAATTCTGCATCTAC 58.907 38.462 1.71 0.00 0.00 2.59
2223 2904 7.897575 ATAGTTCTATCGATTGGAATTCTGC 57.102 36.000 1.71 0.00 0.00 4.26
2270 2952 2.035832 GCCAGCACCTTAGCTTCAAAAA 59.964 45.455 0.00 0.00 43.70 1.94
2271 2953 1.613437 GCCAGCACCTTAGCTTCAAAA 59.387 47.619 0.00 0.00 43.70 2.44
2272 2954 1.247567 GCCAGCACCTTAGCTTCAAA 58.752 50.000 0.00 0.00 43.70 2.69
2273 2955 0.110295 TGCCAGCACCTTAGCTTCAA 59.890 50.000 0.00 0.00 43.70 2.69
2274 2956 0.110295 TTGCCAGCACCTTAGCTTCA 59.890 50.000 0.00 0.00 43.70 3.02
2275 2957 0.807496 CTTGCCAGCACCTTAGCTTC 59.193 55.000 0.00 0.00 43.70 3.86
2276 2958 1.246737 GCTTGCCAGCACCTTAGCTT 61.247 55.000 4.63 0.00 46.49 3.74
2277 2959 1.676967 GCTTGCCAGCACCTTAGCT 60.677 57.895 4.63 0.00 46.49 3.32
2278 2960 2.880648 GCTTGCCAGCACCTTAGC 59.119 61.111 4.63 0.00 46.49 3.09
2287 2969 1.727022 CGCGACAAAAGCTTGCCAG 60.727 57.895 0.00 0.00 35.84 4.85
2288 2970 2.331098 CGCGACAAAAGCTTGCCA 59.669 55.556 0.00 0.00 35.84 4.92
2289 2971 2.429069 CCGCGACAAAAGCTTGCC 60.429 61.111 8.23 0.00 35.84 4.52
2290 2972 2.429069 CCCGCGACAAAAGCTTGC 60.429 61.111 8.23 0.00 35.84 4.01
2291 2973 2.429069 GCCCGCGACAAAAGCTTG 60.429 61.111 8.23 0.00 38.61 4.01
2292 2974 4.025401 CGCCCGCGACAAAAGCTT 62.025 61.111 8.23 0.00 42.83 3.74
2388 3078 0.472471 AAAACACTTCTGAGGCCGGA 59.528 50.000 5.05 0.00 0.00 5.14
2390 3080 3.139077 AGTAAAAACACTTCTGAGGCCG 58.861 45.455 0.00 0.00 0.00 6.13
2397 3087 9.924650 ATGTTATCGTAGAGTAAAAACACTTCT 57.075 29.630 0.00 0.00 43.63 2.85
2409 3099 6.331061 GGTGTTGAAGATGTTATCGTAGAGT 58.669 40.000 0.00 0.00 43.63 3.24
2418 3108 4.819105 AGGATCGGTGTTGAAGATGTTA 57.181 40.909 0.00 0.00 0.00 2.41
2458 3148 2.031069 ACGTCCGGATCATACGATTCAG 60.031 50.000 18.27 0.00 39.80 3.02
2460 3150 2.287427 ACACGTCCGGATCATACGATTC 60.287 50.000 18.27 0.00 39.80 2.52
2463 3153 1.097232 AACACGTCCGGATCATACGA 58.903 50.000 18.27 0.00 39.80 3.43
2490 3180 1.009675 CGATACAAGCCCGCATTGC 60.010 57.895 0.00 0.00 0.00 3.56
2530 3220 2.588856 ATACGCCCGCAAAGACCCTC 62.589 60.000 0.00 0.00 0.00 4.30
2531 3221 2.666098 ATACGCCCGCAAAGACCCT 61.666 57.895 0.00 0.00 0.00 4.34
2532 3222 2.124860 ATACGCCCGCAAAGACCC 60.125 61.111 0.00 0.00 0.00 4.46
2533 3223 2.469516 CCATACGCCCGCAAAGACC 61.470 63.158 0.00 0.00 0.00 3.85
2534 3224 1.448893 TCCATACGCCCGCAAAGAC 60.449 57.895 0.00 0.00 0.00 3.01
2535 3225 1.448893 GTCCATACGCCCGCAAAGA 60.449 57.895 0.00 0.00 0.00 2.52
2536 3226 2.469516 GGTCCATACGCCCGCAAAG 61.470 63.158 0.00 0.00 0.00 2.77
2537 3227 2.437002 GGTCCATACGCCCGCAAA 60.437 61.111 0.00 0.00 0.00 3.68
2538 3228 4.823419 CGGTCCATACGCCCGCAA 62.823 66.667 0.00 0.00 34.62 4.85
2540 3230 4.825252 AACGGTCCATACGCCCGC 62.825 66.667 0.00 0.00 45.49 6.13
2541 3231 2.888534 CAACGGTCCATACGCCCG 60.889 66.667 0.00 0.00 46.93 6.13
2542 3232 3.199891 GCAACGGTCCATACGCCC 61.200 66.667 0.00 0.00 34.00 6.13
2543 3233 3.199891 GGCAACGGTCCATACGCC 61.200 66.667 0.00 0.00 34.00 5.68
2544 3234 2.435234 TGGCAACGGTCCATACGC 60.435 61.111 0.00 0.00 42.51 4.42
2545 3235 2.449525 CGTGGCAACGGTCCATACG 61.450 63.158 5.48 0.00 46.25 3.06
2546 3236 3.481661 CGTGGCAACGGTCCATAC 58.518 61.111 5.48 0.00 46.25 2.39
2567 3257 2.100418 GTGGTCTATGGTAGTCCGGAAC 59.900 54.545 5.23 0.36 36.89 3.62
2568 3258 2.381911 GTGGTCTATGGTAGTCCGGAA 58.618 52.381 5.23 0.00 36.89 4.30
2569 3259 1.410648 GGTGGTCTATGGTAGTCCGGA 60.411 57.143 0.00 0.00 36.89 5.14
2570 3260 1.038280 GGTGGTCTATGGTAGTCCGG 58.962 60.000 0.00 0.00 36.89 5.14
2571 3261 1.771565 TGGTGGTCTATGGTAGTCCG 58.228 55.000 0.00 0.00 36.89 4.79
2572 3262 4.563140 TTTTGGTGGTCTATGGTAGTCC 57.437 45.455 0.00 0.00 35.03 3.85
2573 3263 4.698780 GGTTTTTGGTGGTCTATGGTAGTC 59.301 45.833 0.00 0.00 0.00 2.59
2574 3264 4.507869 GGGTTTTTGGTGGTCTATGGTAGT 60.508 45.833 0.00 0.00 0.00 2.73
2575 3265 4.014406 GGGTTTTTGGTGGTCTATGGTAG 58.986 47.826 0.00 0.00 0.00 3.18
2576 3266 3.658705 AGGGTTTTTGGTGGTCTATGGTA 59.341 43.478 0.00 0.00 0.00 3.25
2577 3267 2.449345 AGGGTTTTTGGTGGTCTATGGT 59.551 45.455 0.00 0.00 0.00 3.55
2578 3268 3.089284 GAGGGTTTTTGGTGGTCTATGG 58.911 50.000 0.00 0.00 0.00 2.74
2579 3269 3.506067 GTGAGGGTTTTTGGTGGTCTATG 59.494 47.826 0.00 0.00 0.00 2.23
2580 3270 3.499745 GGTGAGGGTTTTTGGTGGTCTAT 60.500 47.826 0.00 0.00 0.00 1.98
2581 3271 2.158579 GGTGAGGGTTTTTGGTGGTCTA 60.159 50.000 0.00 0.00 0.00 2.59
2582 3272 1.411074 GGTGAGGGTTTTTGGTGGTCT 60.411 52.381 0.00 0.00 0.00 3.85
2583 3273 1.037493 GGTGAGGGTTTTTGGTGGTC 58.963 55.000 0.00 0.00 0.00 4.02
2584 3274 0.397957 GGGTGAGGGTTTTTGGTGGT 60.398 55.000 0.00 0.00 0.00 4.16
2585 3275 1.118965 GGGGTGAGGGTTTTTGGTGG 61.119 60.000 0.00 0.00 0.00 4.61
2586 3276 0.105709 AGGGGTGAGGGTTTTTGGTG 60.106 55.000 0.00 0.00 0.00 4.17
2587 3277 0.187606 GAGGGGTGAGGGTTTTTGGT 59.812 55.000 0.00 0.00 0.00 3.67
2588 3278 0.482887 AGAGGGGTGAGGGTTTTTGG 59.517 55.000 0.00 0.00 0.00 3.28
2589 3279 1.547901 GGAGAGGGGTGAGGGTTTTTG 60.548 57.143 0.00 0.00 0.00 2.44
2590 3280 0.778083 GGAGAGGGGTGAGGGTTTTT 59.222 55.000 0.00 0.00 0.00 1.94
2591 3281 0.402861 TGGAGAGGGGTGAGGGTTTT 60.403 55.000 0.00 0.00 0.00 2.43
2592 3282 0.842467 CTGGAGAGGGGTGAGGGTTT 60.842 60.000 0.00 0.00 0.00 3.27
2593 3283 1.229658 CTGGAGAGGGGTGAGGGTT 60.230 63.158 0.00 0.00 0.00 4.11
2594 3284 2.452114 CTGGAGAGGGGTGAGGGT 59.548 66.667 0.00 0.00 0.00 4.34
2595 3285 1.992277 CACTGGAGAGGGGTGAGGG 60.992 68.421 0.00 0.00 33.32 4.30
2596 3286 1.229336 ACACTGGAGAGGGGTGAGG 60.229 63.158 0.00 0.00 35.28 3.86
2597 3287 0.833834 ACACACTGGAGAGGGGTGAG 60.834 60.000 3.03 0.00 34.44 3.51
2598 3288 1.121407 CACACACTGGAGAGGGGTGA 61.121 60.000 3.03 0.00 34.44 4.02
2599 3289 1.372683 CACACACTGGAGAGGGGTG 59.627 63.158 0.00 0.00 35.70 4.61
2600 3290 0.694444 AACACACACTGGAGAGGGGT 60.694 55.000 0.00 0.00 0.00 4.95
2601 3291 0.035458 GAACACACACTGGAGAGGGG 59.965 60.000 0.00 0.00 0.00 4.79
2602 3292 0.035458 GGAACACACACTGGAGAGGG 59.965 60.000 0.00 0.00 0.00 4.30
2603 3293 1.051812 AGGAACACACACTGGAGAGG 58.948 55.000 0.00 0.00 0.00 3.69
2604 3294 1.414181 ACAGGAACACACACTGGAGAG 59.586 52.381 0.00 0.00 36.57 3.20
2605 3295 1.412710 GACAGGAACACACACTGGAGA 59.587 52.381 0.00 0.00 36.57 3.71
2606 3296 1.541233 GGACAGGAACACACACTGGAG 60.541 57.143 0.00 0.00 36.57 3.86
2607 3297 0.468226 GGACAGGAACACACACTGGA 59.532 55.000 0.00 0.00 36.57 3.86
2608 3298 0.180171 TGGACAGGAACACACACTGG 59.820 55.000 0.00 0.00 36.57 4.00
2609 3299 1.586422 CTGGACAGGAACACACACTG 58.414 55.000 0.00 0.00 38.19 3.66
2610 3300 0.179045 GCTGGACAGGAACACACACT 60.179 55.000 1.01 0.00 0.00 3.55
2611 3301 0.463654 TGCTGGACAGGAACACACAC 60.464 55.000 1.01 0.00 0.00 3.82
2612 3302 0.473755 ATGCTGGACAGGAACACACA 59.526 50.000 0.00 0.00 30.94 3.72
2613 3303 1.160137 GATGCTGGACAGGAACACAC 58.840 55.000 0.00 0.00 30.94 3.82
2614 3304 0.764271 TGATGCTGGACAGGAACACA 59.236 50.000 0.00 0.00 30.94 3.72
2615 3305 1.446907 CTGATGCTGGACAGGAACAC 58.553 55.000 0.00 0.00 29.42 3.32
2616 3306 0.321919 GCTGATGCTGGACAGGAACA 60.322 55.000 3.98 3.98 35.05 3.18
2617 3307 1.028868 GGCTGATGCTGGACAGGAAC 61.029 60.000 0.00 0.00 39.59 3.62
2618 3308 1.300963 GGCTGATGCTGGACAGGAA 59.699 57.895 0.00 0.00 39.59 3.36
2619 3309 2.673200 GGGCTGATGCTGGACAGGA 61.673 63.158 1.01 0.00 39.59 3.86
2620 3310 2.124403 GGGCTGATGCTGGACAGG 60.124 66.667 1.01 0.00 39.59 4.00
2621 3311 2.513204 CGGGCTGATGCTGGACAG 60.513 66.667 0.00 0.00 39.59 3.51
2622 3312 4.783621 GCGGGCTGATGCTGGACA 62.784 66.667 0.00 0.00 39.59 4.02
2623 3313 4.783621 TGCGGGCTGATGCTGGAC 62.784 66.667 0.00 0.00 39.59 4.02
2624 3314 3.348554 AATGCGGGCTGATGCTGGA 62.349 57.895 0.00 0.00 39.59 3.86
2625 3315 2.831742 AATGCGGGCTGATGCTGG 60.832 61.111 0.00 0.00 39.59 4.85
2626 3316 1.452953 ATGAATGCGGGCTGATGCTG 61.453 55.000 0.00 0.00 39.59 4.41
2627 3317 1.152819 ATGAATGCGGGCTGATGCT 60.153 52.632 0.00 0.00 39.59 3.79
2628 3318 1.007734 CATGAATGCGGGCTGATGC 60.008 57.895 0.00 0.00 38.76 3.91
2629 3319 1.007734 GCATGAATGCGGGCTGATG 60.008 57.895 0.00 0.00 44.67 3.07
2630 3320 3.440151 GCATGAATGCGGGCTGAT 58.560 55.556 0.00 0.00 44.67 2.90
2639 3329 1.004610 CGCTCTACAACGGCATGAATG 60.005 52.381 0.00 0.00 0.00 2.67
2640 3330 1.290203 CGCTCTACAACGGCATGAAT 58.710 50.000 0.00 0.00 0.00 2.57
2641 3331 0.739462 CCGCTCTACAACGGCATGAA 60.739 55.000 0.00 0.00 43.44 2.57
2642 3332 1.153647 CCGCTCTACAACGGCATGA 60.154 57.895 0.00 0.00 43.44 3.07
2643 3333 3.398920 CCGCTCTACAACGGCATG 58.601 61.111 0.00 0.00 43.44 4.06
2668 3358 3.869272 CTGAGCCGGCGTCAATGC 61.869 66.667 23.20 6.26 0.00 3.56
2669 3359 2.125552 TCTGAGCCGGCGTCAATG 60.126 61.111 23.20 13.61 0.00 2.82
2670 3360 2.185350 CTCTGAGCCGGCGTCAAT 59.815 61.111 23.20 1.65 0.00 2.57
2671 3361 4.742201 GCTCTGAGCCGGCGTCAA 62.742 66.667 23.20 13.66 34.48 3.18
2681 3371 4.838486 GGTCGCGTCCGCTCTGAG 62.838 72.222 6.64 0.00 39.32 3.35
2683 3373 4.838486 GAGGTCGCGTCCGCTCTG 62.838 72.222 17.81 0.00 39.32 3.35
2685 3375 4.539881 GAGAGGTCGCGTCCGCTC 62.540 72.222 31.72 31.72 44.35 5.03
2688 3378 2.979197 AAGTGAGAGGTCGCGTCCG 61.979 63.158 16.59 0.00 38.32 4.79
2689 3379 1.444553 CAAGTGAGAGGTCGCGTCC 60.445 63.158 14.89 14.89 38.32 4.79
2690 3380 2.089349 GCAAGTGAGAGGTCGCGTC 61.089 63.158 5.77 0.00 38.32 5.19
2691 3381 2.049063 GCAAGTGAGAGGTCGCGT 60.049 61.111 5.77 0.00 38.32 6.01
2692 3382 2.049156 TGCAAGTGAGAGGTCGCG 60.049 61.111 0.00 0.00 38.32 5.87
2693 3383 2.029844 GGTGCAAGTGAGAGGTCGC 61.030 63.158 0.00 0.00 0.00 5.19
2694 3384 1.734477 CGGTGCAAGTGAGAGGTCG 60.734 63.158 0.00 0.00 0.00 4.79
2695 3385 1.374758 CCGGTGCAAGTGAGAGGTC 60.375 63.158 0.00 0.00 0.00 3.85
2696 3386 2.140792 ACCGGTGCAAGTGAGAGGT 61.141 57.895 6.12 0.00 0.00 3.85
2697 3387 1.669115 CACCGGTGCAAGTGAGAGG 60.669 63.158 24.02 0.00 36.01 3.69
2698 3388 0.532862 AACACCGGTGCAAGTGAGAG 60.533 55.000 34.26 7.12 37.43 3.20
2699 3389 0.813610 CAACACCGGTGCAAGTGAGA 60.814 55.000 34.26 0.00 37.43 3.27
2700 3390 0.813610 TCAACACCGGTGCAAGTGAG 60.814 55.000 34.26 15.50 37.43 3.51
2701 3391 0.393132 TTCAACACCGGTGCAAGTGA 60.393 50.000 34.26 26.28 37.43 3.41
2702 3392 0.029300 CTTCAACACCGGTGCAAGTG 59.971 55.000 34.26 24.58 39.93 3.16
2703 3393 1.724582 GCTTCAACACCGGTGCAAGT 61.725 55.000 34.26 12.50 0.00 3.16
2704 3394 1.008538 GCTTCAACACCGGTGCAAG 60.009 57.895 34.26 29.45 0.00 4.01
2705 3395 2.829206 CGCTTCAACACCGGTGCAA 61.829 57.895 34.26 21.91 0.00 4.08
2706 3396 3.276091 CGCTTCAACACCGGTGCA 61.276 61.111 34.26 15.92 0.00 4.57
2707 3397 4.025401 CCGCTTCAACACCGGTGC 62.025 66.667 34.26 18.21 37.36 5.01
2708 3398 4.025401 GCCGCTTCAACACCGGTG 62.025 66.667 32.83 32.83 43.70 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.