Multiple sequence alignment - TraesCS1A01G185200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G185200 chr1A 100.000 2651 0 0 1 2651 335829902 335832552 0.000000e+00 4896.0
1 TraesCS1A01G185200 chr1B 92.215 1824 119 18 843 2651 346168538 346170353 0.000000e+00 2560.0
2 TraesCS1A01G185200 chr1D 94.409 1556 79 4 813 2365 267380899 267379349 0.000000e+00 2385.0
3 TraesCS1A01G185200 chr1D 93.784 370 22 1 1 370 267381832 267381464 2.980000e-154 555.0
4 TraesCS1A01G185200 chr1D 88.281 256 17 9 2409 2651 267379354 267379099 7.180000e-76 294.0
5 TraesCS1A01G185200 chr1D 88.325 197 15 3 477 665 267381422 267381226 2.050000e-56 230.0
6 TraesCS1A01G185200 chr1D 87.117 163 19 2 170 332 8095653 8095493 1.620000e-42 183.0
7 TraesCS1A01G185200 chr1D 90.265 113 8 3 1267 1377 474916703 474916814 7.650000e-31 145.0
8 TraesCS1A01G185200 chr7B 79.279 666 98 22 39 671 598481561 598480903 1.890000e-116 429.0
9 TraesCS1A01G185200 chr5A 87.356 174 12 7 1267 1439 37968033 37967869 9.690000e-45 191.0
10 TraesCS1A01G185200 chr5A 93.478 46 3 0 3 48 482717646 482717691 4.740000e-08 69.4
11 TraesCS1A01G185200 chr5D 97.143 105 3 0 1430 1534 563593025 563593129 7.540000e-41 178.0
12 TraesCS1A01G185200 chr5D 96.190 105 4 0 1430 1534 213075134 213075030 3.510000e-39 172.0
13 TraesCS1A01G185200 chr4D 97.143 105 3 0 1430 1534 348307230 348307126 7.540000e-41 178.0
14 TraesCS1A01G185200 chr4D 90.351 114 8 1 1267 1377 348307351 348307238 2.130000e-31 147.0
15 TraesCS1A01G185200 chr2D 97.143 105 3 0 1430 1534 33946003 33946107 7.540000e-41 178.0
16 TraesCS1A01G185200 chr2D 96.190 105 4 0 1430 1534 56188800 56188904 3.510000e-39 172.0
17 TraesCS1A01G185200 chr7D 96.154 104 4 0 1430 1533 293591779 293591676 1.260000e-38 171.0
18 TraesCS1A01G185200 chr6D 95.238 105 5 0 1430 1534 263961663 263961767 1.630000e-37 167.0
19 TraesCS1A01G185200 chr5B 92.793 111 8 0 1267 1377 45021655 45021765 7.590000e-36 161.0
20 TraesCS1A01G185200 chr2A 94.286 105 6 0 1273 1377 36029223 36029119 7.590000e-36 161.0
21 TraesCS1A01G185200 chr6A 90.090 111 11 0 1267 1377 41340222 41340332 7.650000e-31 145.0
22 TraesCS1A01G185200 chr3B 91.429 105 9 0 1273 1377 262837506 262837402 7.650000e-31 145.0
23 TraesCS1A01G185200 chr4B 79.882 169 32 2 39 205 658001181 658001013 3.580000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G185200 chr1A 335829902 335832552 2650 False 4896 4896 100.00000 1 2651 1 chr1A.!!$F1 2650
1 TraesCS1A01G185200 chr1B 346168538 346170353 1815 False 2560 2560 92.21500 843 2651 1 chr1B.!!$F1 1808
2 TraesCS1A01G185200 chr1D 267379099 267381832 2733 True 866 2385 91.19975 1 2651 4 chr1D.!!$R2 2650
3 TraesCS1A01G185200 chr7B 598480903 598481561 658 True 429 429 79.27900 39 671 1 chr7B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 460 0.036105 TGAGCAACTCGTGATGGCAT 60.036 50.0 0.0 0.0 32.35 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2399 0.24912 CCACCGCCATGACTAACTCA 59.751 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.717404 GCAACTTTTTCGTTGTGTACTCG 59.283 43.478 5.68 0.00 44.61 4.18
34 35 4.725737 GCAACTTTTTCGTTGTGTACTCGT 60.726 41.667 5.68 0.00 44.61 4.18
36 37 3.307782 ACTTTTTCGTTGTGTACTCGTGG 59.692 43.478 0.00 0.00 0.00 4.94
91 92 5.734720 TGATGAAACTTCTCTATTTCGCCT 58.265 37.500 0.00 0.00 37.59 5.52
104 105 2.774439 TTCGCCTGTTGAAGCTTTTC 57.226 45.000 0.00 0.00 0.00 2.29
135 137 3.980646 TTGAACTTTCACATGAACGGG 57.019 42.857 0.00 0.00 36.83 5.28
257 259 6.037500 GTGTCCGGTTGAAACTTTATATACCC 59.962 42.308 0.00 0.00 0.00 3.69
258 260 5.234972 GTCCGGTTGAAACTTTATATACCCG 59.765 44.000 0.00 0.00 0.00 5.28
259 261 4.024641 CCGGTTGAAACTTTATATACCCGC 60.025 45.833 0.00 0.00 0.00 6.13
288 290 1.713932 GCTTTCGAATCAAACGGTTGC 59.286 47.619 8.75 0.00 34.50 4.17
371 389 2.497675 GAGGAGATGGTTGTAGCAGTCA 59.502 50.000 0.00 0.00 0.00 3.41
394 412 2.478879 GCCGCCGTTGTTATAGCATTTT 60.479 45.455 0.00 0.00 0.00 1.82
396 414 3.359654 CGCCGTTGTTATAGCATTTTCC 58.640 45.455 0.00 0.00 0.00 3.13
399 417 4.339429 CCGTTGTTATAGCATTTTCCGTG 58.661 43.478 0.00 0.00 0.00 4.94
400 418 4.339429 CGTTGTTATAGCATTTTCCGTGG 58.661 43.478 0.00 0.00 0.00 4.94
401 419 4.093703 CGTTGTTATAGCATTTTCCGTGGA 59.906 41.667 0.00 0.00 0.00 4.02
402 420 5.329493 GTTGTTATAGCATTTTCCGTGGAC 58.671 41.667 0.00 0.00 0.00 4.02
403 421 3.619483 TGTTATAGCATTTTCCGTGGACG 59.381 43.478 0.00 0.00 39.44 4.79
418 436 2.773993 GGACGGTTCCAACATAGGAA 57.226 50.000 0.00 0.00 45.12 3.36
433 451 1.871080 AGGAAACTGTGAGCAACTCG 58.129 50.000 0.00 0.00 41.13 4.18
434 452 1.139058 AGGAAACTGTGAGCAACTCGT 59.861 47.619 0.00 0.00 41.13 4.18
435 453 1.261619 GGAAACTGTGAGCAACTCGTG 59.738 52.381 0.00 0.00 32.35 4.35
436 454 2.201732 GAAACTGTGAGCAACTCGTGA 58.798 47.619 0.00 0.00 32.35 4.35
437 455 2.533266 AACTGTGAGCAACTCGTGAT 57.467 45.000 0.00 0.00 32.35 3.06
438 456 1.788258 ACTGTGAGCAACTCGTGATG 58.212 50.000 0.00 0.00 32.35 3.07
439 457 1.073964 CTGTGAGCAACTCGTGATGG 58.926 55.000 0.00 0.00 32.35 3.51
440 458 0.950555 TGTGAGCAACTCGTGATGGC 60.951 55.000 0.00 0.00 32.35 4.40
441 459 0.950555 GTGAGCAACTCGTGATGGCA 60.951 55.000 0.00 0.00 32.35 4.92
442 460 0.036105 TGAGCAACTCGTGATGGCAT 60.036 50.000 0.00 0.00 32.35 4.40
443 461 1.206849 TGAGCAACTCGTGATGGCATA 59.793 47.619 0.00 0.00 32.35 3.14
444 462 2.158914 TGAGCAACTCGTGATGGCATAT 60.159 45.455 0.00 0.00 32.35 1.78
445 463 2.874701 GAGCAACTCGTGATGGCATATT 59.125 45.455 0.00 0.00 0.00 1.28
446 464 2.874701 AGCAACTCGTGATGGCATATTC 59.125 45.455 0.00 0.00 0.00 1.75
447 465 2.613595 GCAACTCGTGATGGCATATTCA 59.386 45.455 0.00 0.00 0.00 2.57
448 466 3.251729 GCAACTCGTGATGGCATATTCAT 59.748 43.478 0.00 0.00 0.00 2.57
449 467 4.779987 CAACTCGTGATGGCATATTCATG 58.220 43.478 0.00 0.67 35.07 3.07
450 468 3.405831 ACTCGTGATGGCATATTCATGG 58.594 45.455 0.00 0.00 32.36 3.66
455 473 4.085876 GGCATATTCATGGCGGCT 57.914 55.556 11.43 0.00 46.42 5.52
456 474 2.344535 GGCATATTCATGGCGGCTT 58.655 52.632 11.43 0.00 46.42 4.35
457 475 0.675633 GGCATATTCATGGCGGCTTT 59.324 50.000 11.43 0.00 46.42 3.51
458 476 1.336240 GGCATATTCATGGCGGCTTTC 60.336 52.381 11.43 0.00 46.42 2.62
459 477 1.336240 GCATATTCATGGCGGCTTTCC 60.336 52.381 11.43 0.00 32.36 3.13
460 478 1.955778 CATATTCATGGCGGCTTTCCA 59.044 47.619 11.43 0.00 38.09 3.53
461 479 2.136298 TATTCATGGCGGCTTTCCAA 57.864 45.000 11.43 0.00 37.13 3.53
462 480 0.532115 ATTCATGGCGGCTTTCCAAC 59.468 50.000 11.43 0.00 37.13 3.77
463 481 0.539438 TTCATGGCGGCTTTCCAACT 60.539 50.000 11.43 0.00 37.13 3.16
464 482 0.960364 TCATGGCGGCTTTCCAACTC 60.960 55.000 11.43 0.00 37.13 3.01
465 483 0.962356 CATGGCGGCTTTCCAACTCT 60.962 55.000 11.43 0.00 37.13 3.24
466 484 0.618458 ATGGCGGCTTTCCAACTCTA 59.382 50.000 11.43 0.00 37.13 2.43
467 485 0.036388 TGGCGGCTTTCCAACTCTAG 60.036 55.000 11.43 0.00 0.00 2.43
468 486 1.369839 GGCGGCTTTCCAACTCTAGC 61.370 60.000 0.00 0.00 0.00 3.42
469 487 0.391793 GCGGCTTTCCAACTCTAGCT 60.392 55.000 0.00 0.00 34.16 3.32
470 488 1.646189 CGGCTTTCCAACTCTAGCTC 58.354 55.000 0.00 0.00 34.16 4.09
471 489 1.646189 GGCTTTCCAACTCTAGCTCG 58.354 55.000 0.00 0.00 34.16 5.03
472 490 1.003108 GCTTTCCAACTCTAGCTCGC 58.997 55.000 0.00 0.00 0.00 5.03
473 491 1.646189 CTTTCCAACTCTAGCTCGCC 58.354 55.000 0.00 0.00 0.00 5.54
474 492 0.108804 TTTCCAACTCTAGCTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
475 493 1.945354 TTCCAACTCTAGCTCGCCGG 61.945 60.000 0.00 0.00 0.00 6.13
522 621 2.359975 GGAAGAAGTGGGCGTGGG 60.360 66.667 0.00 0.00 0.00 4.61
546 645 3.256960 GGTTGGAGGCAGGGGACA 61.257 66.667 0.00 0.00 0.00 4.02
596 695 7.116090 CGATGCAATCTAAAGGAGTAAGATGAG 59.884 40.741 0.00 0.00 42.58 2.90
597 696 6.586344 TGCAATCTAAAGGAGTAAGATGAGG 58.414 40.000 0.00 0.00 30.50 3.86
598 697 6.384015 TGCAATCTAAAGGAGTAAGATGAGGA 59.616 38.462 0.00 0.00 30.50 3.71
614 724 2.817056 GGAGCTGCTGAGGGGATCC 61.817 68.421 7.01 1.92 0.00 3.36
665 818 0.533032 GGTCGGGAGGAAGAAGACAG 59.467 60.000 0.00 0.00 33.84 3.51
720 873 9.784531 AAATAAGTATAAGATGGACAGATGGTG 57.215 33.333 0.00 0.00 0.00 4.17
721 874 5.220710 AGTATAAGATGGACAGATGGTGC 57.779 43.478 0.00 0.00 38.51 5.01
739 892 0.179108 GCAGGGGTGAGATGTACGAC 60.179 60.000 0.00 0.00 0.00 4.34
745 898 1.202313 GGTGAGATGTACGACAGCCTC 60.202 57.143 0.00 1.87 34.53 4.70
787 1122 1.220206 CAGGCTTGATCGTCAGGCT 59.780 57.895 16.98 9.02 46.99 4.58
788 1123 0.809241 CAGGCTTGATCGTCAGGCTC 60.809 60.000 16.98 10.23 46.99 4.70
789 1124 1.880340 GGCTTGATCGTCAGGCTCG 60.880 63.158 16.98 0.00 46.99 5.03
790 1125 2.520904 GCTTGATCGTCAGGCTCGC 61.521 63.158 12.51 0.00 44.80 5.03
791 1126 2.202610 TTGATCGTCAGGCTCGCG 60.203 61.111 0.00 0.00 0.00 5.87
792 1127 2.874010 CTTGATCGTCAGGCTCGCGT 62.874 60.000 5.77 0.00 0.00 6.01
793 1128 2.951745 GATCGTCAGGCTCGCGTG 60.952 66.667 5.77 4.44 0.00 5.34
809 1144 4.612412 TGCGACCGGCCGAAGTTT 62.612 61.111 30.73 4.57 42.61 2.66
810 1145 3.785499 GCGACCGGCCGAAGTTTC 61.785 66.667 30.73 13.29 34.80 2.78
811 1146 2.048503 CGACCGGCCGAAGTTTCT 60.049 61.111 30.73 0.00 0.00 2.52
816 1151 0.320946 CCGGCCGAAGTTTCTAACCA 60.321 55.000 30.73 0.00 0.00 3.67
818 1153 1.337447 CGGCCGAAGTTTCTAACCAGA 60.337 52.381 24.07 0.00 0.00 3.86
838 1173 2.105328 GCCGGGCACAAACGTTTT 59.895 55.556 15.62 0.20 0.00 2.43
839 1174 2.234335 GCCGGGCACAAACGTTTTG 61.234 57.895 15.62 13.66 0.00 2.44
840 1175 1.433879 CCGGGCACAAACGTTTTGA 59.566 52.632 11.66 0.00 0.00 2.69
847 1182 4.261447 GGGCACAAACGTTTTGACTATCTT 60.261 41.667 20.74 0.00 0.00 2.40
884 1219 2.283173 GGCACCCAACCCAGGAAG 60.283 66.667 0.00 0.00 0.00 3.46
955 1290 1.413077 AGGCTATTACCACGAGGAAGC 59.587 52.381 5.68 8.58 38.69 3.86
1021 1356 2.047655 CCGCCTTGCTCCACGTAA 60.048 61.111 0.00 0.00 0.00 3.18
1022 1357 1.449601 CCGCCTTGCTCCACGTAAT 60.450 57.895 0.00 0.00 0.00 1.89
1058 1402 1.633432 CCCTTACCCTCATCACCAACA 59.367 52.381 0.00 0.00 0.00 3.33
1075 1419 1.504912 ACAGATGCACAGCCTATCCT 58.495 50.000 0.00 0.00 0.00 3.24
1092 1436 2.631384 TCCTCCACTTCCATCCTTTCA 58.369 47.619 0.00 0.00 0.00 2.69
1100 1444 0.613260 TCCATCCTTTCACCACCTCG 59.387 55.000 0.00 0.00 0.00 4.63
1104 1448 3.777925 CTTTCACCACCTCGCGCG 61.778 66.667 26.76 26.76 0.00 6.86
1105 1449 4.287781 TTTCACCACCTCGCGCGA 62.288 61.111 32.60 32.60 0.00 5.87
1207 1551 3.206150 GACAGCACAGGAAACAAGAAGA 58.794 45.455 0.00 0.00 0.00 2.87
1733 2080 4.703575 ACTTGATACTCGTACAGGCTACAA 59.296 41.667 0.00 0.00 0.00 2.41
1802 2149 5.105351 GCAATAGGTAGAATGGCCAAAACTT 60.105 40.000 10.96 0.00 0.00 2.66
1820 2167 5.869649 AACTTAACACTTGGCAGGAAAAT 57.130 34.783 2.65 0.00 0.00 1.82
1822 2169 6.969993 ACTTAACACTTGGCAGGAAAATAA 57.030 33.333 2.65 0.00 0.00 1.40
1986 2334 5.890985 AGGATCTCGATATAGACCTCCAATG 59.109 44.000 9.98 0.00 30.18 2.82
1993 2341 2.174685 TAGACCTCCAATGCAGCCTA 57.825 50.000 0.00 0.00 0.00 3.93
1995 2343 0.811616 GACCTCCAATGCAGCCTACG 60.812 60.000 0.00 0.00 0.00 3.51
1996 2344 2.182842 CCTCCAATGCAGCCTACGC 61.183 63.158 0.00 0.00 0.00 4.42
2004 2352 1.814793 TGCAGCCTACGCACAATTTA 58.185 45.000 0.00 0.00 37.52 1.40
2008 2356 3.498082 CAGCCTACGCACAATTTAAACC 58.502 45.455 0.00 0.00 37.52 3.27
2024 2372 6.546428 TTTAAACCACCATCAGGAAACAAA 57.454 33.333 0.00 0.00 38.69 2.83
2028 2376 6.933514 AACCACCATCAGGAAACAAAATAT 57.066 33.333 0.00 0.00 38.69 1.28
2076 2428 0.682855 TCATGGCGGTGGAAATTCCC 60.683 55.000 9.87 0.79 35.03 3.97
2093 2445 2.262637 TCCCGGTCCAGAACATTAACT 58.737 47.619 0.00 0.00 0.00 2.24
2106 2458 4.584327 ACATTAACTGGTCCTGTTTTGC 57.416 40.909 18.17 0.00 0.00 3.68
2107 2459 3.957497 ACATTAACTGGTCCTGTTTTGCA 59.043 39.130 18.17 0.00 0.00 4.08
2116 2468 4.815308 TGGTCCTGTTTTGCAATGAAAATG 59.185 37.500 0.00 0.00 0.00 2.32
2123 2475 7.801315 CCTGTTTTGCAATGAAAATGAAGATTG 59.199 33.333 0.00 0.00 0.00 2.67
2130 2482 7.279090 TGCAATGAAAATGAAGATTGGCTATTG 59.721 33.333 0.00 0.00 0.00 1.90
2142 2494 3.094386 GCTATTGCCATTGGGACGA 57.906 52.632 4.53 0.00 35.59 4.20
2147 2499 2.511600 GCCATTGGGACGAGGACG 60.512 66.667 4.53 0.00 39.09 4.79
2204 2556 8.187480 TGTTATGTGCATAAAATGGTGATACAC 58.813 33.333 6.24 0.00 35.30 2.90
2250 2602 0.249031 GGTTGACCAGTTTGCAGCAC 60.249 55.000 0.00 0.00 35.64 4.40
2292 2644 1.003580 GTCCAGCTCTCCCAAACATCA 59.996 52.381 0.00 0.00 0.00 3.07
2375 2775 7.578169 AGCGAGTTAAATATAGTAAATCGGC 57.422 36.000 20.92 15.78 44.70 5.54
2376 2776 7.149973 AGCGAGTTAAATATAGTAAATCGGCA 58.850 34.615 20.92 0.00 44.70 5.69
2377 2777 7.654520 AGCGAGTTAAATATAGTAAATCGGCAA 59.345 33.333 20.92 0.00 44.70 4.52
2378 2778 8.440833 GCGAGTTAAATATAGTAAATCGGCAAT 58.559 33.333 20.92 0.00 44.70 3.56
2379 2779 9.953825 CGAGTTAAATATAGTAAATCGGCAATC 57.046 33.333 15.68 0.00 42.31 2.67
2389 2789 7.190920 AGTAAATCGGCAATCTACATAAAGC 57.809 36.000 0.00 0.00 0.00 3.51
2390 2790 6.765989 AGTAAATCGGCAATCTACATAAAGCA 59.234 34.615 0.00 0.00 0.00 3.91
2391 2791 6.639632 AAATCGGCAATCTACATAAAGCAT 57.360 33.333 0.00 0.00 0.00 3.79
2392 2792 6.639632 AATCGGCAATCTACATAAAGCATT 57.360 33.333 0.00 0.00 0.00 3.56
2393 2793 6.639632 ATCGGCAATCTACATAAAGCATTT 57.360 33.333 0.00 0.00 43.42 2.32
2394 2794 6.060028 TCGGCAATCTACATAAAGCATTTC 57.940 37.500 0.00 0.00 40.09 2.17
2395 2795 5.588246 TCGGCAATCTACATAAAGCATTTCA 59.412 36.000 0.00 0.00 40.09 2.69
2396 2796 5.682862 CGGCAATCTACATAAAGCATTTCAC 59.317 40.000 0.00 0.00 40.09 3.18
2397 2797 6.458751 CGGCAATCTACATAAAGCATTTCACT 60.459 38.462 0.00 0.00 40.09 3.41
2398 2798 7.260603 GGCAATCTACATAAAGCATTTCACTT 58.739 34.615 0.00 0.00 40.09 3.16
2399 2799 7.761249 GGCAATCTACATAAAGCATTTCACTTT 59.239 33.333 0.00 0.00 40.09 2.66
2400 2800 8.801913 GCAATCTACATAAAGCATTTCACTTTC 58.198 33.333 0.00 0.00 40.09 2.62
2401 2801 9.844790 CAATCTACATAAAGCATTTCACTTTCA 57.155 29.630 0.00 0.00 40.09 2.69
2404 2804 9.844790 TCTACATAAAGCATTTCACTTTCAATG 57.155 29.630 0.00 0.00 40.09 2.82
2508 2908 4.521075 GCATGGAGCGAGCACTTA 57.479 55.556 0.00 0.00 0.00 2.24
2563 2970 4.147321 AGGTCAAACGGAAGAGTAGTACA 58.853 43.478 2.52 0.00 0.00 2.90
2621 3032 8.428063 TGGAATCAAGTTGGTAATTTTCAACAT 58.572 29.630 19.06 9.58 43.91 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.113544 CGAAATAAAAAGAAGCTTCAACTCCAC 59.886 37.037 27.57 10.21 0.00 4.02
34 35 7.138736 CGAAATAAAAAGAAGCTTCAACTCCA 58.861 34.615 27.57 8.91 0.00 3.86
36 37 9.319223 CTACGAAATAAAAAGAAGCTTCAACTC 57.681 33.333 27.57 11.04 0.00 3.01
91 92 6.418057 ACCATATTTGGAAAAGCTTCAACA 57.582 33.333 9.40 0.00 46.92 3.33
104 105 7.871973 TCATGTGAAAGTTCAAACCATATTTGG 59.128 33.333 0.00 0.00 43.16 3.28
119 121 2.341846 ACACCCGTTCATGTGAAAGT 57.658 45.000 7.67 0.00 35.58 2.66
183 185 5.353123 GTCCATATGAAAGCTTCAACCGTAA 59.647 40.000 3.65 0.00 43.95 3.18
257 259 1.837538 TTCGAAAGCTTCAACCCGCG 61.838 55.000 0.00 0.00 0.00 6.46
258 260 0.521735 ATTCGAAAGCTTCAACCCGC 59.478 50.000 0.00 0.00 0.00 6.13
259 261 1.804151 TGATTCGAAAGCTTCAACCCG 59.196 47.619 0.00 0.00 0.00 5.28
288 290 0.537371 ACCGAGGACCCAAAAAGCTG 60.537 55.000 0.00 0.00 0.00 4.24
371 389 2.169146 GCTATAACAACGGCGGCGT 61.169 57.895 32.71 32.71 0.00 5.68
381 399 3.619483 CGTCCACGGAAAATGCTATAACA 59.381 43.478 0.00 0.00 35.37 2.41
399 417 2.745821 GTTTCCTATGTTGGAACCGTCC 59.254 50.000 0.00 0.00 44.83 4.79
400 418 3.435671 CAGTTTCCTATGTTGGAACCGTC 59.564 47.826 0.00 0.00 44.83 4.79
401 419 3.181448 ACAGTTTCCTATGTTGGAACCGT 60.181 43.478 0.00 0.00 44.83 4.83
402 420 3.188460 CACAGTTTCCTATGTTGGAACCG 59.812 47.826 0.00 0.00 44.83 4.44
403 421 4.394729 TCACAGTTTCCTATGTTGGAACC 58.605 43.478 0.00 0.00 44.83 3.62
404 422 4.083271 GCTCACAGTTTCCTATGTTGGAAC 60.083 45.833 0.00 0.00 44.83 3.62
405 423 4.072131 GCTCACAGTTTCCTATGTTGGAA 58.928 43.478 0.00 0.00 43.63 3.53
406 424 3.072330 TGCTCACAGTTTCCTATGTTGGA 59.928 43.478 0.00 0.00 0.00 3.53
407 425 3.411446 TGCTCACAGTTTCCTATGTTGG 58.589 45.455 0.00 0.00 0.00 3.77
408 426 4.516698 AGTTGCTCACAGTTTCCTATGTTG 59.483 41.667 0.00 0.00 0.00 3.33
409 427 4.718961 AGTTGCTCACAGTTTCCTATGTT 58.281 39.130 0.00 0.00 0.00 2.71
410 428 4.319177 GAGTTGCTCACAGTTTCCTATGT 58.681 43.478 0.00 0.00 0.00 2.29
411 429 3.369147 CGAGTTGCTCACAGTTTCCTATG 59.631 47.826 0.00 0.00 0.00 2.23
412 430 3.006967 ACGAGTTGCTCACAGTTTCCTAT 59.993 43.478 0.00 0.00 0.00 2.57
413 431 2.364324 ACGAGTTGCTCACAGTTTCCTA 59.636 45.455 0.00 0.00 0.00 2.94
414 432 1.139058 ACGAGTTGCTCACAGTTTCCT 59.861 47.619 0.00 0.00 0.00 3.36
415 433 1.261619 CACGAGTTGCTCACAGTTTCC 59.738 52.381 0.00 0.00 0.00 3.13
416 434 2.201732 TCACGAGTTGCTCACAGTTTC 58.798 47.619 0.00 0.00 0.00 2.78
417 435 2.309528 TCACGAGTTGCTCACAGTTT 57.690 45.000 0.00 0.00 0.00 2.66
418 436 2.138320 CATCACGAGTTGCTCACAGTT 58.862 47.619 0.00 0.00 0.00 3.16
419 437 1.606480 CCATCACGAGTTGCTCACAGT 60.606 52.381 0.00 0.00 0.00 3.55
420 438 1.073964 CCATCACGAGTTGCTCACAG 58.926 55.000 0.00 0.00 0.00 3.66
421 439 0.950555 GCCATCACGAGTTGCTCACA 60.951 55.000 0.00 0.00 0.00 3.58
422 440 0.950555 TGCCATCACGAGTTGCTCAC 60.951 55.000 0.00 0.00 0.00 3.51
423 441 0.036105 ATGCCATCACGAGTTGCTCA 60.036 50.000 0.00 0.00 0.00 4.26
424 442 1.939974 TATGCCATCACGAGTTGCTC 58.060 50.000 0.00 0.00 0.00 4.26
425 443 2.627515 ATATGCCATCACGAGTTGCT 57.372 45.000 0.00 0.00 0.00 3.91
426 444 2.613595 TGAATATGCCATCACGAGTTGC 59.386 45.455 0.00 0.00 0.00 4.17
427 445 4.319984 CCATGAATATGCCATCACGAGTTG 60.320 45.833 0.00 0.00 32.79 3.16
428 446 3.817084 CCATGAATATGCCATCACGAGTT 59.183 43.478 0.00 0.00 32.79 3.01
429 447 3.405831 CCATGAATATGCCATCACGAGT 58.594 45.455 0.00 0.00 32.79 4.18
430 448 2.161012 GCCATGAATATGCCATCACGAG 59.839 50.000 0.00 0.00 32.79 4.18
431 449 2.153645 GCCATGAATATGCCATCACGA 58.846 47.619 0.00 0.00 32.79 4.35
432 450 1.135888 CGCCATGAATATGCCATCACG 60.136 52.381 0.00 0.00 32.79 4.35
433 451 1.200716 CCGCCATGAATATGCCATCAC 59.799 52.381 0.00 0.00 32.79 3.06
434 452 1.536940 CCGCCATGAATATGCCATCA 58.463 50.000 0.00 0.00 32.79 3.07
435 453 0.171903 GCCGCCATGAATATGCCATC 59.828 55.000 0.00 0.00 32.79 3.51
436 454 0.251474 AGCCGCCATGAATATGCCAT 60.251 50.000 0.00 0.00 32.79 4.40
437 455 0.467844 AAGCCGCCATGAATATGCCA 60.468 50.000 0.00 0.00 32.79 4.92
438 456 0.675633 AAAGCCGCCATGAATATGCC 59.324 50.000 0.00 0.00 32.79 4.40
439 457 1.336240 GGAAAGCCGCCATGAATATGC 60.336 52.381 0.00 0.00 32.79 3.14
440 458 1.955778 TGGAAAGCCGCCATGAATATG 59.044 47.619 0.00 0.00 36.79 1.78
441 459 2.362077 GTTGGAAAGCCGCCATGAATAT 59.638 45.455 0.00 0.00 34.90 1.28
442 460 1.748493 GTTGGAAAGCCGCCATGAATA 59.252 47.619 0.00 0.00 34.90 1.75
443 461 0.532115 GTTGGAAAGCCGCCATGAAT 59.468 50.000 0.00 0.00 34.90 2.57
444 462 0.539438 AGTTGGAAAGCCGCCATGAA 60.539 50.000 0.00 0.00 34.90 2.57
445 463 0.960364 GAGTTGGAAAGCCGCCATGA 60.960 55.000 0.00 0.00 34.90 3.07
446 464 0.962356 AGAGTTGGAAAGCCGCCATG 60.962 55.000 0.00 0.00 34.90 3.66
447 465 0.618458 TAGAGTTGGAAAGCCGCCAT 59.382 50.000 0.00 0.00 34.90 4.40
448 466 0.036388 CTAGAGTTGGAAAGCCGCCA 60.036 55.000 0.00 0.00 36.79 5.69
449 467 1.369839 GCTAGAGTTGGAAAGCCGCC 61.370 60.000 0.00 0.00 36.79 6.13
450 468 0.391793 AGCTAGAGTTGGAAAGCCGC 60.392 55.000 0.00 0.00 35.54 6.53
451 469 1.646189 GAGCTAGAGTTGGAAAGCCG 58.354 55.000 0.00 0.00 35.54 5.52
452 470 1.646189 CGAGCTAGAGTTGGAAAGCC 58.354 55.000 0.00 0.00 35.54 4.35
453 471 1.003108 GCGAGCTAGAGTTGGAAAGC 58.997 55.000 0.00 0.00 35.16 3.51
454 472 1.646189 GGCGAGCTAGAGTTGGAAAG 58.354 55.000 0.00 0.00 0.00 2.62
455 473 0.108804 CGGCGAGCTAGAGTTGGAAA 60.109 55.000 0.00 0.00 0.00 3.13
456 474 1.511305 CGGCGAGCTAGAGTTGGAA 59.489 57.895 0.00 0.00 0.00 3.53
457 475 2.415608 CCGGCGAGCTAGAGTTGGA 61.416 63.158 9.30 0.00 0.00 3.53
458 476 2.105128 CCGGCGAGCTAGAGTTGG 59.895 66.667 9.30 0.00 0.00 3.77
459 477 2.105128 CCCGGCGAGCTAGAGTTG 59.895 66.667 9.30 0.00 0.00 3.16
460 478 3.148279 CCCCGGCGAGCTAGAGTT 61.148 66.667 9.30 0.00 0.00 3.01
473 491 4.778143 CAGGTCCCTTTCGCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
474 492 2.253403 CTACAGGTCCCTTTCGCCCC 62.253 65.000 0.00 0.00 0.00 5.80
475 493 1.221021 CTACAGGTCCCTTTCGCCC 59.779 63.158 0.00 0.00 0.00 6.13
522 621 4.704833 TGCCTCCAACCTCAGCGC 62.705 66.667 0.00 0.00 0.00 5.92
538 637 3.071602 CCTAATCCTGTGTATGTCCCCTG 59.928 52.174 0.00 0.00 0.00 4.45
546 645 2.907042 GGCTAGCCCTAATCCTGTGTAT 59.093 50.000 24.19 0.00 0.00 2.29
576 675 6.843861 AGCTCCTCATCTTACTCCTTTAGATT 59.156 38.462 0.00 0.00 0.00 2.40
577 676 6.267471 CAGCTCCTCATCTTACTCCTTTAGAT 59.733 42.308 0.00 0.00 0.00 1.98
596 695 2.817056 GGATCCCCTCAGCAGCTCC 61.817 68.421 0.00 0.00 0.00 4.70
597 696 2.828145 GGATCCCCTCAGCAGCTC 59.172 66.667 0.00 0.00 0.00 4.09
598 697 3.160047 CGGATCCCCTCAGCAGCT 61.160 66.667 6.06 0.00 0.00 4.24
614 724 3.238441 CACTCCTCGTCTTCTTTCTTCG 58.762 50.000 0.00 0.00 0.00 3.79
697 850 6.326323 TGCACCATCTGTCCATCTTATACTTA 59.674 38.462 0.00 0.00 0.00 2.24
699 852 4.655649 TGCACCATCTGTCCATCTTATACT 59.344 41.667 0.00 0.00 0.00 2.12
700 853 4.960938 TGCACCATCTGTCCATCTTATAC 58.039 43.478 0.00 0.00 0.00 1.47
703 856 2.171237 CCTGCACCATCTGTCCATCTTA 59.829 50.000 0.00 0.00 0.00 2.10
704 857 1.064906 CCTGCACCATCTGTCCATCTT 60.065 52.381 0.00 0.00 0.00 2.40
705 858 0.545171 CCTGCACCATCTGTCCATCT 59.455 55.000 0.00 0.00 0.00 2.90
706 859 0.465097 CCCTGCACCATCTGTCCATC 60.465 60.000 0.00 0.00 0.00 3.51
708 861 2.605607 CCCCTGCACCATCTGTCCA 61.606 63.158 0.00 0.00 0.00 4.02
709 862 2.273449 CCCCTGCACCATCTGTCC 59.727 66.667 0.00 0.00 0.00 4.02
710 863 1.377725 CACCCCTGCACCATCTGTC 60.378 63.158 0.00 0.00 0.00 3.51
711 864 1.845627 CTCACCCCTGCACCATCTGT 61.846 60.000 0.00 0.00 0.00 3.41
712 865 1.077930 CTCACCCCTGCACCATCTG 60.078 63.158 0.00 0.00 0.00 2.90
713 866 0.622738 ATCTCACCCCTGCACCATCT 60.623 55.000 0.00 0.00 0.00 2.90
714 867 0.465097 CATCTCACCCCTGCACCATC 60.465 60.000 0.00 0.00 0.00 3.51
715 868 1.210204 ACATCTCACCCCTGCACCAT 61.210 55.000 0.00 0.00 0.00 3.55
716 869 0.546507 TACATCTCACCCCTGCACCA 60.547 55.000 0.00 0.00 0.00 4.17
717 870 0.107654 GTACATCTCACCCCTGCACC 60.108 60.000 0.00 0.00 0.00 5.01
718 871 0.460284 CGTACATCTCACCCCTGCAC 60.460 60.000 0.00 0.00 0.00 4.57
719 872 0.613572 TCGTACATCTCACCCCTGCA 60.614 55.000 0.00 0.00 0.00 4.41
720 873 0.179108 GTCGTACATCTCACCCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
721 874 1.135139 CTGTCGTACATCTCACCCCTG 59.865 57.143 0.00 0.00 0.00 4.45
722 875 1.475403 CTGTCGTACATCTCACCCCT 58.525 55.000 0.00 0.00 0.00 4.79
792 1127 4.612412 AAACTTCGGCCGGTCGCA 62.612 61.111 26.77 13.58 40.31 5.10
793 1128 2.824071 TAGAAACTTCGGCCGGTCGC 62.824 60.000 26.77 8.75 0.00 5.19
794 1129 0.388907 TTAGAAACTTCGGCCGGTCG 60.389 55.000 25.52 25.52 0.00 4.79
795 1130 1.073964 GTTAGAAACTTCGGCCGGTC 58.926 55.000 27.83 14.70 0.00 4.79
796 1131 0.321034 GGTTAGAAACTTCGGCCGGT 60.321 55.000 27.83 14.02 0.00 5.28
797 1132 0.320946 TGGTTAGAAACTTCGGCCGG 60.321 55.000 27.83 13.23 0.00 6.13
798 1133 1.076332 CTGGTTAGAAACTTCGGCCG 58.924 55.000 22.12 22.12 0.00 6.13
799 1134 2.074576 GTCTGGTTAGAAACTTCGGCC 58.925 52.381 0.00 0.00 34.01 6.13
800 1135 1.725164 CGTCTGGTTAGAAACTTCGGC 59.275 52.381 0.00 0.00 34.01 5.54
801 1136 2.334838 CCGTCTGGTTAGAAACTTCGG 58.665 52.381 0.00 0.00 34.01 4.30
802 1137 1.725164 GCCGTCTGGTTAGAAACTTCG 59.275 52.381 0.00 0.00 37.67 3.79
803 1138 2.074576 GGCCGTCTGGTTAGAAACTTC 58.925 52.381 0.00 0.00 37.67 3.01
804 1139 1.607251 CGGCCGTCTGGTTAGAAACTT 60.607 52.381 19.50 0.00 37.67 2.66
805 1140 0.037605 CGGCCGTCTGGTTAGAAACT 60.038 55.000 19.50 0.00 37.67 2.66
806 1141 1.017701 CCGGCCGTCTGGTTAGAAAC 61.018 60.000 26.12 0.00 37.67 2.78
807 1142 1.294138 CCGGCCGTCTGGTTAGAAA 59.706 57.895 26.12 0.00 37.67 2.52
808 1143 2.652095 CCCGGCCGTCTGGTTAGAA 61.652 63.158 26.12 0.00 37.01 2.10
809 1144 3.072468 CCCGGCCGTCTGGTTAGA 61.072 66.667 26.12 0.00 37.01 2.10
810 1145 4.832608 GCCCGGCCGTCTGGTTAG 62.833 72.222 26.12 5.50 37.01 2.34
838 1173 1.339631 CGGCCCCACAAAAGATAGTCA 60.340 52.381 0.00 0.00 0.00 3.41
839 1174 1.065709 TCGGCCCCACAAAAGATAGTC 60.066 52.381 0.00 0.00 0.00 2.59
840 1175 0.988832 TCGGCCCCACAAAAGATAGT 59.011 50.000 0.00 0.00 0.00 2.12
847 1182 2.517402 GTGTGTCGGCCCCACAAA 60.517 61.111 21.03 6.38 43.87 2.83
970 1305 1.067582 GTGGATTCGTAGGAGGCGG 59.932 63.158 0.00 0.00 0.00 6.13
973 1308 1.740285 CCGGTGGATTCGTAGGAGG 59.260 63.158 0.00 0.00 0.00 4.30
1058 1402 1.055040 GGAGGATAGGCTGTGCATCT 58.945 55.000 5.44 0.00 0.00 2.90
1075 1419 2.061848 TGGTGAAAGGATGGAAGTGGA 58.938 47.619 0.00 0.00 0.00 4.02
1195 1539 0.790814 CGGCTCGTCTTCTTGTTTCC 59.209 55.000 0.00 0.00 0.00 3.13
1197 1541 0.531974 TGCGGCTCGTCTTCTTGTTT 60.532 50.000 0.00 0.00 0.00 2.83
1207 1551 2.262915 CTTCTCCTTGCGGCTCGT 59.737 61.111 0.00 0.00 0.00 4.18
1733 2080 5.334879 GCGAATTGTTCCATAGTTTCACTGT 60.335 40.000 0.00 0.00 0.00 3.55
1747 2094 2.053627 CAAAGCCACTGCGAATTGTTC 58.946 47.619 0.00 0.00 44.33 3.18
1802 2149 7.589958 TTCTTTATTTTCCTGCCAAGTGTTA 57.410 32.000 0.00 0.00 0.00 2.41
1820 2167 4.079672 TGGGGGTTCACTCAGTTTTCTTTA 60.080 41.667 0.00 0.00 0.00 1.85
1822 2169 2.243736 TGGGGGTTCACTCAGTTTTCTT 59.756 45.455 0.00 0.00 0.00 2.52
1882 2229 3.914426 TCCATCTGCTTTAGGAGAACC 57.086 47.619 5.04 0.00 45.49 3.62
1986 2334 2.911819 TTAAATTGTGCGTAGGCTGC 57.088 45.000 9.11 0.00 40.82 5.25
1993 2341 3.319405 TGATGGTGGTTTAAATTGTGCGT 59.681 39.130 0.00 0.00 0.00 5.24
1995 2343 4.021544 TCCTGATGGTGGTTTAAATTGTGC 60.022 41.667 0.00 0.00 34.23 4.57
1996 2344 5.720371 TCCTGATGGTGGTTTAAATTGTG 57.280 39.130 0.00 0.00 34.23 3.33
2004 2352 5.628797 ATTTTGTTTCCTGATGGTGGTTT 57.371 34.783 0.00 0.00 34.23 3.27
2008 2356 7.835822 TGGTAATATTTTGTTTCCTGATGGTG 58.164 34.615 0.00 0.00 34.23 4.17
2049 2399 0.249120 CCACCGCCATGACTAACTCA 59.751 55.000 0.00 0.00 0.00 3.41
2064 2415 0.679960 CTGGACCGGGAATTTCCACC 60.680 60.000 17.08 13.45 38.64 4.61
2093 2445 4.478206 TTTTCATTGCAAAACAGGACCA 57.522 36.364 1.71 0.00 0.00 4.02
2106 2458 7.627340 GCAATAGCCAATCTTCATTTTCATTG 58.373 34.615 0.00 0.00 33.58 2.82
2107 2459 7.781548 GCAATAGCCAATCTTCATTTTCATT 57.218 32.000 0.00 0.00 33.58 2.57
2130 2482 2.511600 CGTCCTCGTCCCAATGGC 60.512 66.667 0.00 0.00 0.00 4.40
2136 2488 2.494918 CACATCCGTCCTCGTCCC 59.505 66.667 0.00 0.00 35.01 4.46
2137 2489 2.202756 GCACATCCGTCCTCGTCC 60.203 66.667 0.00 0.00 35.01 4.79
2142 2494 4.345257 AGTTATAAGATGCACATCCGTCCT 59.655 41.667 7.01 0.00 38.58 3.85
2173 2525 5.868801 ACCATTTTATGCACATAACAGCAAC 59.131 36.000 2.59 0.00 44.88 4.17
2204 2556 4.758773 AATCCTTTGGTATGCCCATTTG 57.241 40.909 0.00 0.00 44.74 2.32
2250 2602 2.355209 GCTGGAAGGGTCTTTACTGGAG 60.355 54.545 0.00 0.00 0.00 3.86
2292 2644 3.505680 TCGTATTTGCCAGTCATGCTTTT 59.494 39.130 0.00 0.00 0.00 2.27
2353 2705 9.953825 GATTGCCGATTTACTATATTTAACTCG 57.046 33.333 8.44 8.44 33.64 4.18
2365 2765 6.765989 TGCTTTATGTAGATTGCCGATTTACT 59.234 34.615 0.00 0.00 0.00 2.24
2366 2766 6.954944 TGCTTTATGTAGATTGCCGATTTAC 58.045 36.000 0.00 0.00 0.00 2.01
2367 2767 7.744087 ATGCTTTATGTAGATTGCCGATTTA 57.256 32.000 0.00 0.00 0.00 1.40
2368 2768 6.639632 ATGCTTTATGTAGATTGCCGATTT 57.360 33.333 0.00 0.00 0.00 2.17
2369 2769 6.639632 AATGCTTTATGTAGATTGCCGATT 57.360 33.333 0.00 0.00 0.00 3.34
2370 2770 6.262944 TGAAATGCTTTATGTAGATTGCCGAT 59.737 34.615 0.00 0.00 0.00 4.18
2371 2771 5.588246 TGAAATGCTTTATGTAGATTGCCGA 59.412 36.000 0.00 0.00 0.00 5.54
2372 2772 5.682862 GTGAAATGCTTTATGTAGATTGCCG 59.317 40.000 0.00 0.00 0.00 5.69
2373 2773 6.799512 AGTGAAATGCTTTATGTAGATTGCC 58.200 36.000 0.00 0.00 0.00 4.52
2374 2774 8.693542 AAAGTGAAATGCTTTATGTAGATTGC 57.306 30.769 0.00 0.00 34.76 3.56
2375 2775 9.844790 TGAAAGTGAAATGCTTTATGTAGATTG 57.155 29.630 0.00 0.00 36.43 2.67
2378 2778 9.844790 CATTGAAAGTGAAATGCTTTATGTAGA 57.155 29.630 0.00 0.00 36.43 2.59
2398 2798 7.953005 TCCCTGTATAATTTTCAGCATTGAA 57.047 32.000 0.00 0.00 41.44 2.69
2399 2799 7.041167 CGATCCCTGTATAATTTTCAGCATTGA 60.041 37.037 0.00 0.00 0.00 2.57
2400 2800 7.080099 CGATCCCTGTATAATTTTCAGCATTG 58.920 38.462 0.00 0.00 0.00 2.82
2401 2801 6.772716 ACGATCCCTGTATAATTTTCAGCATT 59.227 34.615 0.00 0.00 0.00 3.56
2402 2802 6.205464 CACGATCCCTGTATAATTTTCAGCAT 59.795 38.462 0.00 0.00 0.00 3.79
2403 2803 5.527214 CACGATCCCTGTATAATTTTCAGCA 59.473 40.000 0.00 0.00 0.00 4.41
2404 2804 5.049405 CCACGATCCCTGTATAATTTTCAGC 60.049 44.000 0.00 0.00 0.00 4.26
2405 2805 6.288294 TCCACGATCCCTGTATAATTTTCAG 58.712 40.000 0.00 0.00 0.00 3.02
2406 2806 6.241882 TCCACGATCCCTGTATAATTTTCA 57.758 37.500 0.00 0.00 0.00 2.69
2407 2807 7.228706 ACATTCCACGATCCCTGTATAATTTTC 59.771 37.037 0.00 0.00 0.00 2.29
2408 2808 7.060421 ACATTCCACGATCCCTGTATAATTTT 58.940 34.615 0.00 0.00 0.00 1.82
2409 2809 6.601332 ACATTCCACGATCCCTGTATAATTT 58.399 36.000 0.00 0.00 0.00 1.82
2410 2810 6.187727 ACATTCCACGATCCCTGTATAATT 57.812 37.500 0.00 0.00 0.00 1.40
2411 2811 5.825593 ACATTCCACGATCCCTGTATAAT 57.174 39.130 0.00 0.00 0.00 1.28
2412 2812 6.551975 TCTTACATTCCACGATCCCTGTATAA 59.448 38.462 0.00 0.00 0.00 0.98
2468 2868 3.054728 TCGATTCCATTGCAGGAGGTTTA 60.055 43.478 0.00 0.00 39.25 2.01
2469 2869 2.094675 CGATTCCATTGCAGGAGGTTT 58.905 47.619 0.00 0.00 39.25 3.27
2472 2872 1.590932 CTCGATTCCATTGCAGGAGG 58.409 55.000 0.00 0.00 39.25 4.30
2532 2932 5.785243 TCTTCCGTTTGACCTTTTTGTTTT 58.215 33.333 0.00 0.00 0.00 2.43
2536 2936 4.632538 ACTCTTCCGTTTGACCTTTTTG 57.367 40.909 0.00 0.00 0.00 2.44
2539 2946 4.684484 ACTACTCTTCCGTTTGACCTTT 57.316 40.909 0.00 0.00 0.00 3.11
2543 2950 5.766222 TCTTGTACTACTCTTCCGTTTGAC 58.234 41.667 0.00 0.00 0.00 3.18
2563 2970 9.991906 TGCTTAAAACAAGTACTAGTGTATCTT 57.008 29.630 5.39 2.48 0.00 2.40
2580 2987 5.554822 TGATTCCACGGTATGCTTAAAAC 57.445 39.130 0.00 0.00 0.00 2.43
2592 3003 5.385509 AAATTACCAACTTGATTCCACGG 57.614 39.130 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.