Multiple sequence alignment - TraesCS1A01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G185100 chr1A 100.000 4845 0 0 1 4845 335825038 335829882 0.000000e+00 8948.0
1 TraesCS1A01G185100 chr1A 88.235 136 16 0 3222 3357 465453629 465453494 3.880000e-36 163.0
2 TraesCS1A01G185100 chr1D 90.783 2300 137 37 2171 4437 267386408 267384151 0.000000e+00 3003.0
3 TraesCS1A01G185100 chr1D 92.781 1316 50 13 763 2045 267387779 267386476 0.000000e+00 1862.0
4 TraesCS1A01G185100 chr1D 91.220 410 30 3 4440 4844 267382261 267381853 1.970000e-153 553.0
5 TraesCS1A01G185100 chr1D 95.789 190 6 2 283 471 267388378 267388190 6.090000e-79 305.0
6 TraesCS1A01G185100 chr1D 86.081 273 20 11 20 283 267390600 267390337 1.330000e-70 278.0
7 TraesCS1A01G185100 chr1D 91.489 141 10 1 503 641 267387977 267387837 4.950000e-45 193.0
8 TraesCS1A01G185100 chr1D 83.491 212 21 11 4638 4842 33991170 33991374 8.280000e-43 185.0
9 TraesCS1A01G185100 chr1D 86.029 136 19 0 3222 3357 366724877 366725012 3.910000e-31 147.0
10 TraesCS1A01G185100 chr1B 90.158 2154 111 33 2043 4134 346166329 346168443 0.000000e+00 2710.0
11 TraesCS1A01G185100 chr1B 93.755 1265 50 10 795 2045 346165031 346166280 0.000000e+00 1871.0
12 TraesCS1A01G185100 chr1B 84.026 626 45 28 135 733 346163346 346163943 7.090000e-153 551.0
13 TraesCS1A01G185100 chr1B 86.765 136 18 0 3222 3357 491039802 491039667 8.400000e-33 152.0
14 TraesCS1A01G185100 chr1B 94.118 51 3 0 745 795 346164962 346165012 1.450000e-10 78.7
15 TraesCS1A01G185100 chr2A 83.929 224 21 12 4626 4842 12160151 12160366 2.960000e-47 200.0
16 TraesCS1A01G185100 chr2D 83.886 211 21 10 4638 4842 591189850 591189647 6.400000e-44 189.0
17 TraesCS1A01G185100 chr2D 86.207 58 3 5 4441 4496 620503417 620503363 1.880000e-04 58.4
18 TraesCS1A01G185100 chr6D 83.099 213 21 11 4636 4842 448160772 448160975 3.850000e-41 180.0
19 TraesCS1A01G185100 chr6D 82.710 214 23 10 4636 4842 334233104 334232898 1.390000e-40 178.0
20 TraesCS1A01G185100 chr6D 100.000 28 0 0 3268 3295 425902626 425902599 9.000000e-03 52.8
21 TraesCS1A01G185100 chr3B 82.629 213 20 14 4638 4842 70119490 70119693 6.450000e-39 172.0
22 TraesCS1A01G185100 chr5D 82.381 210 21 13 4638 4840 438043183 438043383 8.340000e-38 169.0
23 TraesCS1A01G185100 chr3D 81.604 212 23 13 4638 4842 566965986 566966188 1.400000e-35 161.0
24 TraesCS1A01G185100 chr2B 100.000 30 0 0 4440 4469 760878840 760878811 6.770000e-04 56.5
25 TraesCS1A01G185100 chr6B 100.000 28 0 0 3268 3295 640978738 640978711 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G185100 chr1A 335825038 335829882 4844 False 8948.000000 8948 100.000000 1 4845 1 chr1A.!!$F1 4844
1 TraesCS1A01G185100 chr1D 267381853 267390600 8747 True 1032.333333 3003 91.357167 20 4844 6 chr1D.!!$R1 4824
2 TraesCS1A01G185100 chr1B 346163346 346168443 5097 False 1302.675000 2710 90.514250 135 4134 4 chr1B.!!$F1 3999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 4130 0.033504 GTTGTCAAGCCTCCAGTCGA 59.966 55.0 0.0 0.0 0.00 4.20 F
912 4144 0.671781 CCAGTCGAGCCTCAACCAAG 60.672 60.0 0.0 0.0 0.00 3.61 F
1857 5101 0.892755 TCTACAAGGGTGTGCTACGG 59.107 55.0 0.0 0.0 38.82 4.02 F
2533 5847 0.604578 CACTGCTTTGGTTGGATGGG 59.395 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 5544 0.179108 CGCTGGAGGCAGTTACTACC 60.179 60.0 0.00 0.0 41.91 3.18 R
2533 5847 0.249238 CTCGTAGACCAGCATCCTGC 60.249 60.0 0.00 0.0 45.46 4.85 R
3363 6705 0.109597 GAAAACGACGGCGAGTAGGA 60.110 55.0 22.49 0.0 41.64 2.94 R
3916 7296 0.100682 GTCCGATCGACTAGCTTGCA 59.899 55.0 18.66 0.0 38.57 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.763303 ATTTGTGAACGTTCTAATTTTGGC 57.237 33.333 27.32 8.18 0.00 4.52
46 47 5.746721 GTGAACGTTCTAATTTTGGCTTGTT 59.253 36.000 27.32 0.00 0.00 2.83
50 51 5.861787 ACGTTCTAATTTTGGCTTGTTATGC 59.138 36.000 0.00 0.00 0.00 3.14
51 52 5.861251 CGTTCTAATTTTGGCTTGTTATGCA 59.139 36.000 0.00 0.00 0.00 3.96
81 82 2.352032 GGCAGAGTGGTACCGAGCT 61.352 63.158 7.57 5.26 0.00 4.09
82 83 1.139947 GCAGAGTGGTACCGAGCTC 59.860 63.158 17.92 17.92 0.00 4.09
170 180 4.395080 TCGTTCGTCGATGCCATC 57.605 55.556 0.00 0.00 44.01 3.51
171 181 1.226859 TCGTTCGTCGATGCCATCC 60.227 57.895 0.00 0.00 44.01 3.51
172 182 1.518352 CGTTCGTCGATGCCATCCA 60.518 57.895 0.00 0.00 42.86 3.41
173 183 0.875908 CGTTCGTCGATGCCATCCAT 60.876 55.000 0.00 0.00 42.86 3.41
186 196 0.106569 CATCCATGCCTTGGCCACTA 60.107 55.000 3.88 0.00 46.01 2.74
241 257 1.227704 TTTGCGCGTCAGGGAAAGA 60.228 52.632 8.43 0.00 0.00 2.52
256 272 1.869132 GAAAGAACGCCGTTACCTTGT 59.131 47.619 0.79 0.00 0.00 3.16
276 292 2.187163 GCCCTTCCAGTACGAGCC 59.813 66.667 0.00 0.00 0.00 4.70
289 2264 3.056328 GAGCCAAGCCAACCCGTC 61.056 66.667 0.00 0.00 0.00 4.79
460 2444 0.903942 ATTAGGTTGGACGCCCGTAA 59.096 50.000 0.00 0.00 34.29 3.18
535 2712 1.435577 AACTATGTGACGGCGGAAAC 58.564 50.000 13.24 6.90 0.00 2.78
571 2748 2.514824 GTCAGGAATCGGGGCAGC 60.515 66.667 0.00 0.00 0.00 5.25
665 2844 3.676216 AAAAAGGCGCCGGTTAGG 58.324 55.556 23.20 0.00 44.97 2.69
695 2900 2.268920 GCATCCAGTTCAGCGGGA 59.731 61.111 0.00 0.00 45.24 5.14
700 2905 0.535335 TCCAGTTCAGCGGGACATAC 59.465 55.000 0.00 0.00 36.53 2.39
703 2908 1.112113 AGTTCAGCGGGACATACGAT 58.888 50.000 0.00 0.00 0.00 3.73
736 2941 4.533919 ATCCCGTTGATGATGAGAGATC 57.466 45.455 0.00 0.00 30.54 2.75
737 2942 3.570540 TCCCGTTGATGATGAGAGATCT 58.429 45.455 0.00 0.00 0.00 2.75
738 2943 3.571828 TCCCGTTGATGATGAGAGATCTC 59.428 47.826 15.29 15.29 43.15 2.75
739 2944 3.563508 CCGTTGATGATGAGAGATCTCG 58.436 50.000 16.97 1.25 45.72 4.04
740 2945 3.004210 CCGTTGATGATGAGAGATCTCGT 59.996 47.826 16.97 4.23 45.72 4.18
742 2947 5.381477 CGTTGATGATGAGAGATCTCGTAG 58.619 45.833 16.97 0.00 45.72 3.51
743 2948 5.616645 CGTTGATGATGAGAGATCTCGTAGG 60.617 48.000 16.97 0.00 45.72 3.18
744 2949 3.755905 TGATGATGAGAGATCTCGTAGGC 59.244 47.826 16.97 7.70 45.72 3.93
745 2950 2.509569 TGATGAGAGATCTCGTAGGCC 58.490 52.381 16.97 0.00 45.72 5.19
746 2951 2.158608 TGATGAGAGATCTCGTAGGCCA 60.159 50.000 16.97 8.84 45.72 5.36
748 2953 1.213182 TGAGAGATCTCGTAGGCCACT 59.787 52.381 16.97 0.00 45.72 4.00
749 2954 2.303175 GAGAGATCTCGTAGGCCACTT 58.697 52.381 16.97 0.00 32.78 3.16
750 2955 3.118000 TGAGAGATCTCGTAGGCCACTTA 60.118 47.826 16.97 0.00 45.72 2.24
759 3970 1.002087 GTAGGCCACTTAGCACAGTGT 59.998 52.381 5.01 0.00 42.45 3.55
884 4114 0.512952 CTTGCCTCGTTTCTCGGTTG 59.487 55.000 0.00 0.00 40.32 3.77
894 4124 0.034896 TTCTCGGTTGTCAAGCCTCC 59.965 55.000 9.12 0.00 0.00 4.30
899 4129 0.951040 GGTTGTCAAGCCTCCAGTCG 60.951 60.000 3.25 0.00 0.00 4.18
900 4130 0.033504 GTTGTCAAGCCTCCAGTCGA 59.966 55.000 0.00 0.00 0.00 4.20
902 4132 1.446966 GTCAAGCCTCCAGTCGAGC 60.447 63.158 0.00 0.00 37.27 5.03
910 4142 1.533033 TCCAGTCGAGCCTCAACCA 60.533 57.895 0.00 0.00 0.00 3.67
912 4144 0.671781 CCAGTCGAGCCTCAACCAAG 60.672 60.000 0.00 0.00 0.00 3.61
915 4147 1.009389 GTCGAGCCTCAACCAAGTCG 61.009 60.000 0.00 0.00 0.00 4.18
944 4176 2.654912 GCACACACGTACTCGGCAC 61.655 63.158 0.00 0.00 41.85 5.01
945 4177 1.007734 CACACACGTACTCGGCACT 60.008 57.895 0.00 0.00 41.85 4.40
946 4178 1.002250 CACACACGTACTCGGCACTC 61.002 60.000 0.00 0.00 41.85 3.51
947 4179 1.796355 CACACGTACTCGGCACTCG 60.796 63.158 0.00 0.00 41.85 4.18
948 4180 2.202440 CACGTACTCGGCACTCGG 60.202 66.667 0.00 0.00 41.85 4.63
958 4190 3.279116 GCACTCGGCAGCACACAA 61.279 61.111 0.00 0.00 43.97 3.33
959 4191 2.941333 CACTCGGCAGCACACAAG 59.059 61.111 0.00 0.00 0.00 3.16
960 4192 2.974698 ACTCGGCAGCACACAAGC 60.975 61.111 0.00 0.00 0.00 4.01
1011 4243 2.733671 CGTCTGCATGCACACTCCG 61.734 63.158 21.51 13.15 0.00 4.63
1200 4444 2.370123 CATCCCCATCCCCCACCT 60.370 66.667 0.00 0.00 0.00 4.00
1205 4449 3.797353 CCATCCCCCACCTCACCG 61.797 72.222 0.00 0.00 0.00 4.94
1628 4872 2.203126 GAAGGCCCCGCTGATCAG 60.203 66.667 18.84 18.84 0.00 2.90
1857 5101 0.892755 TCTACAAGGGTGTGCTACGG 59.107 55.000 0.00 0.00 38.82 4.02
1903 5147 4.887071 AGAATCTGCACAACAACAGGTAAA 59.113 37.500 0.00 0.00 34.57 2.01
1990 5239 6.616260 GCACATTGTTCAACCATTCGAATTTC 60.616 38.462 8.21 0.00 0.00 2.17
2022 5271 1.369625 ACGCGAAATGATGTCTTCCC 58.630 50.000 15.93 0.00 0.00 3.97
2041 5290 1.323534 CCTTGAATTCGTTACGAGGCG 59.676 52.381 7.69 0.00 37.14 5.52
2116 5416 4.891627 TTTGACGCTGAAATTTCTCACA 57.108 36.364 18.64 5.06 0.00 3.58
2120 5421 4.024893 TGACGCTGAAATTTCTCACAGTTC 60.025 41.667 18.64 9.52 33.57 3.01
2125 5426 4.065088 TGAAATTTCTCACAGTTCCCGAG 58.935 43.478 18.64 0.00 0.00 4.63
2195 5496 3.189285 CAACTTTGTTTCAGGGCAGTTG 58.811 45.455 0.00 0.00 36.28 3.16
2208 5509 3.508793 AGGGCAGTTGTCAGATTTGAATG 59.491 43.478 0.00 0.00 34.49 2.67
2243 5544 3.673956 TACTCCGCAACCATGGCCG 62.674 63.158 13.04 12.26 0.00 6.13
2395 5696 1.597027 CGGGTTCGGCACAAGAACT 60.597 57.895 8.66 0.00 0.00 3.01
2404 5705 1.604278 GGCACAAGAACTTGGTCAGTC 59.396 52.381 17.05 4.17 44.45 3.51
2444 5745 1.153369 GCGCCTGCAGGTAATGAGA 60.153 57.895 32.81 0.00 42.15 3.27
2455 5756 4.365723 CAGGTAATGAGAAATGCAATGCC 58.634 43.478 1.53 0.00 0.00 4.40
2510 5824 6.397272 TGTTGACATTGCTTAATTTGATCCC 58.603 36.000 0.00 0.00 0.00 3.85
2533 5847 0.604578 CACTGCTTTGGTTGGATGGG 59.395 55.000 0.00 0.00 0.00 4.00
2534 5848 1.187567 ACTGCTTTGGTTGGATGGGC 61.188 55.000 0.00 0.00 0.00 5.36
2686 6000 7.507672 ACTGTAATTCTTCACTTTCGTATCG 57.492 36.000 0.00 0.00 0.00 2.92
2690 6004 6.872670 AATTCTTCACTTTCGTATCGTCTC 57.127 37.500 0.00 0.00 0.00 3.36
2692 6006 5.562506 TCTTCACTTTCGTATCGTCTCAT 57.437 39.130 0.00 0.00 0.00 2.90
2696 6010 6.373186 TCACTTTCGTATCGTCTCATATGT 57.627 37.500 1.90 0.00 0.00 2.29
2716 6030 5.259832 TGTGATTGTTCAACAAAGCATGA 57.740 34.783 7.14 0.00 41.96 3.07
2773 6089 6.407525 GGAGTAGAGAAGAAGTATGGCATGTT 60.408 42.308 10.98 3.23 0.00 2.71
2780 6096 7.341805 AGAAGAAGTATGGCATGTTTGTAGAT 58.658 34.615 10.98 0.00 0.00 1.98
2830 6146 1.066605 GCTGCTAGTTGGCATGATTGG 59.933 52.381 0.00 0.00 41.63 3.16
3170 6490 1.746220 CTTCGGGTCAGTCTCCACTAG 59.254 57.143 0.00 0.00 0.00 2.57
3365 6707 4.803426 CGCGGAGGTCAGCTGTCC 62.803 72.222 20.86 20.86 34.89 4.02
3366 6708 3.386237 GCGGAGGTCAGCTGTCCT 61.386 66.667 29.35 29.35 36.30 3.85
3367 6709 2.052690 GCGGAGGTCAGCTGTCCTA 61.053 63.158 29.07 0.00 33.78 2.94
3406 6751 2.807631 TTCTACCCGCGCACTTCGAC 62.808 60.000 8.75 0.00 41.67 4.20
3436 6781 0.034476 TGCCAGTGCACTCTTCTCTG 59.966 55.000 18.64 4.54 44.23 3.35
3682 7059 3.018149 GACCTCAGGTTCAGAGACGTAT 58.982 50.000 0.00 0.00 35.25 3.06
3709 7086 0.808125 TTGCCATACACCGCATTGAC 59.192 50.000 0.00 0.00 34.35 3.18
3711 7088 1.724582 GCCATACACCGCATTGACCC 61.725 60.000 0.00 0.00 0.00 4.46
3719 7096 3.512516 GCATTGACCCGCAGCTCC 61.513 66.667 0.00 0.00 0.00 4.70
3720 7097 2.270205 CATTGACCCGCAGCTCCT 59.730 61.111 0.00 0.00 0.00 3.69
3722 7099 0.531532 CATTGACCCGCAGCTCCTAG 60.532 60.000 0.00 0.00 0.00 3.02
3724 7101 1.888436 TTGACCCGCAGCTCCTAGTG 61.888 60.000 0.00 0.00 0.00 2.74
3726 7103 2.286127 GACCCGCAGCTCCTAGTGTC 62.286 65.000 0.00 0.00 0.00 3.67
3727 7104 2.351244 CCCGCAGCTCCTAGTGTCA 61.351 63.158 0.00 0.00 0.00 3.58
3728 7105 1.591703 CCGCAGCTCCTAGTGTCAA 59.408 57.895 0.00 0.00 0.00 3.18
3749 7126 5.300034 TCAAGTGTCAACTCTTCATTTGCAT 59.700 36.000 0.00 0.00 34.77 3.96
3859 7236 2.046285 GTGAAGGGAACGCCATGGG 61.046 63.158 15.13 6.26 35.15 4.00
3874 7251 2.818274 GGGCATGGACGGACGAAC 60.818 66.667 0.00 0.00 0.00 3.95
3897 7275 1.883544 TGTTTCCTTCGCGTTCGCA 60.884 52.632 16.98 2.08 35.26 5.10
3902 7280 3.334751 CTTCGCGTTCGCACACCA 61.335 61.111 16.98 0.00 35.26 4.17
3903 7281 3.558282 CTTCGCGTTCGCACACCAC 62.558 63.158 16.98 0.00 35.26 4.16
3916 7296 2.878406 GCACACCACATGTTCTTGTACT 59.122 45.455 0.00 0.00 40.64 2.73
3917 7297 3.303990 GCACACCACATGTTCTTGTACTG 60.304 47.826 0.00 0.00 40.64 2.74
3918 7298 2.878406 ACACCACATGTTCTTGTACTGC 59.122 45.455 0.00 0.00 38.98 4.40
4061 7456 8.639428 CAACTTTATATGATCGACATAACGGAG 58.361 37.037 10.39 9.02 43.47 4.63
4071 7466 3.381949 GACATAACGGAGGTGCATCTAC 58.618 50.000 0.00 0.00 0.00 2.59
4078 7473 0.175760 GAGGTGCATCTACGCTTCCA 59.824 55.000 0.00 0.00 0.00 3.53
4081 7476 1.438651 GTGCATCTACGCTTCCACAA 58.561 50.000 0.00 0.00 0.00 3.33
4084 7479 3.809832 GTGCATCTACGCTTCCACAATAT 59.190 43.478 0.00 0.00 0.00 1.28
4108 7503 3.131396 CCTGTGTCACTTTGGTGTCTAC 58.869 50.000 4.27 0.00 43.41 2.59
4113 7512 2.798847 GTCACTTTGGTGTCTACGGTTC 59.201 50.000 0.00 0.00 43.41 3.62
4161 7560 0.321996 AAGAACCTCGTTCCAGCTCC 59.678 55.000 0.98 0.00 42.85 4.70
4191 7590 1.514678 GGTTGCCGTCATTCACAGCA 61.515 55.000 0.00 0.00 0.00 4.41
4192 7591 0.385974 GTTGCCGTCATTCACAGCAC 60.386 55.000 0.00 0.00 32.18 4.40
4193 7592 0.534877 TTGCCGTCATTCACAGCACT 60.535 50.000 0.00 0.00 32.18 4.40
4197 7596 2.079158 CCGTCATTCACAGCACTCATT 58.921 47.619 0.00 0.00 0.00 2.57
4202 7601 4.931601 GTCATTCACAGCACTCATTACTCA 59.068 41.667 0.00 0.00 0.00 3.41
4224 7623 0.606604 TCAGAAGTTCAGCCCGTACC 59.393 55.000 5.50 0.00 0.00 3.34
4228 7627 1.764571 AAGTTCAGCCCGTACCTGCA 61.765 55.000 4.31 0.00 0.00 4.41
4242 7641 3.869623 CTGCAGTAGGAGTTGCCAT 57.130 52.632 5.25 0.00 39.54 4.40
4246 7645 0.729116 CAGTAGGAGTTGCCATTGCG 59.271 55.000 0.00 0.00 41.78 4.85
4280 7679 2.525629 TCCCCGTGTCAAGCAGGA 60.526 61.111 0.00 0.00 35.14 3.86
4283 7682 3.414700 CCGTGTCAAGCAGGACGC 61.415 66.667 10.30 10.30 43.18 5.19
4303 7702 3.425892 CGCAAGAAAGAGATGCCTTCAAG 60.426 47.826 0.00 0.00 43.02 3.02
4352 7751 3.184581 GTCAAACACGATCTCCAGAACAC 59.815 47.826 0.00 0.00 0.00 3.32
4357 7756 0.530744 CGATCTCCAGAACACGGGAA 59.469 55.000 0.00 0.00 31.58 3.97
4358 7757 1.469940 CGATCTCCAGAACACGGGAAG 60.470 57.143 0.00 0.00 31.58 3.46
4359 7758 1.825474 GATCTCCAGAACACGGGAAGA 59.175 52.381 0.00 0.00 31.58 2.87
4360 7759 1.257743 TCTCCAGAACACGGGAAGAG 58.742 55.000 0.00 0.00 31.58 2.85
4361 7760 0.969894 CTCCAGAACACGGGAAGAGT 59.030 55.000 0.00 0.00 31.58 3.24
4362 7761 0.679505 TCCAGAACACGGGAAGAGTG 59.320 55.000 0.00 0.00 44.57 3.51
4363 7762 0.320771 CCAGAACACGGGAAGAGTGG 60.321 60.000 0.00 0.00 43.41 4.00
4364 7763 0.679505 CAGAACACGGGAAGAGTGGA 59.320 55.000 0.00 0.00 43.41 4.02
4365 7764 1.070134 CAGAACACGGGAAGAGTGGAA 59.930 52.381 0.00 0.00 43.41 3.53
4366 7765 1.070289 AGAACACGGGAAGAGTGGAAC 59.930 52.381 0.00 0.00 43.41 3.62
4425 7829 0.994995 CAGGACGCACGAAAGAGATG 59.005 55.000 0.00 0.00 0.00 2.90
4489 9780 0.100682 TGCCTAGCAGTCGTTCGATC 59.899 55.000 0.00 0.00 33.32 3.69
4509 9800 3.708451 TCTGAGAGTACATGGGCTGTTA 58.292 45.455 0.00 0.00 39.39 2.41
4565 9856 0.677098 TCCTTCGTCTCTAGCACGCT 60.677 55.000 8.71 0.00 37.18 5.07
4603 9898 0.886043 TCGACCAGACGACCTCGAAA 60.886 55.000 0.78 0.00 43.02 3.46
4610 9905 2.049433 CGACCTCGAAACACCGCT 60.049 61.111 0.00 0.00 43.02 5.52
4657 9952 2.886134 GCCGGTTGGACCACTGGTA 61.886 63.158 17.94 0.00 44.30 3.25
4683 9978 2.203209 CCCGCCCCTCTTATGCAC 60.203 66.667 0.00 0.00 0.00 4.57
4697 9992 0.251564 ATGCACCAAATCGGACCCAA 60.252 50.000 0.00 0.00 38.63 4.12
4708 10003 6.652900 CCAAATCGGACCCAACAAAATAAATT 59.347 34.615 0.00 0.00 36.56 1.82
4709 10004 7.360776 CCAAATCGGACCCAACAAAATAAATTG 60.361 37.037 0.00 0.00 36.56 2.32
4710 10005 6.597832 ATCGGACCCAACAAAATAAATTGA 57.402 33.333 0.00 0.00 34.38 2.57
4717 10012 3.224884 ACAAAATAAATTGACCCGCCG 57.775 42.857 0.00 0.00 34.38 6.46
4735 10030 1.372623 GGTCCGTGGAGTTCGTCAC 60.373 63.158 0.00 0.00 0.00 3.67
4737 10032 2.430244 CCGTGGAGTTCGTCACCG 60.430 66.667 0.00 0.00 0.00 4.94
4740 10035 2.022129 GTGGAGTTCGTCACCGCTG 61.022 63.158 0.00 0.00 35.08 5.18
4741 10036 2.338984 GGAGTTCGTCACCGCTGT 59.661 61.111 0.00 0.00 0.00 4.40
4747 10042 1.802337 TTCGTCACCGCTGTAGCTGT 61.802 55.000 0.00 0.00 39.06 4.40
4777 10072 0.894835 TGAAGCCATCGCAGTAGTCA 59.105 50.000 0.00 0.00 37.52 3.41
4791 10086 4.005650 CAGTAGTCAGTTGCATCAATGGT 58.994 43.478 0.00 0.00 0.00 3.55
4801 10096 1.675714 GCATCAATGGTGAGGTGTCGA 60.676 52.381 0.00 0.00 37.86 4.20
4828 10123 0.944386 TTTTTGTCGCTGGTCTCTGC 59.056 50.000 0.00 0.00 34.96 4.26
4841 10136 2.880890 GGTCTCTGCTTGAAGCTTTTCA 59.119 45.455 18.94 0.00 42.97 2.69
4844 10139 5.508657 GGTCTCTGCTTGAAGCTTTTCAAAT 60.509 40.000 18.94 0.00 42.97 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.980780 CCAAAATTAGAACGTTCACAAATTTTT 57.019 25.926 32.20 23.99 35.94 1.94
15 16 8.119845 GCCAAAATTAGAACGTTCACAAATTTT 58.880 29.630 30.81 30.81 37.08 1.82
16 17 7.494298 AGCCAAAATTAGAACGTTCACAAATTT 59.506 29.630 28.78 27.32 32.57 1.82
17 18 6.983890 AGCCAAAATTAGAACGTTCACAAATT 59.016 30.769 28.78 24.15 0.00 1.82
18 19 6.512297 AGCCAAAATTAGAACGTTCACAAAT 58.488 32.000 28.78 20.51 0.00 2.32
19 20 5.897050 AGCCAAAATTAGAACGTTCACAAA 58.103 33.333 28.78 19.31 0.00 2.83
20 21 5.508200 AGCCAAAATTAGAACGTTCACAA 57.492 34.783 28.78 21.33 0.00 3.33
21 22 5.163602 ACAAGCCAAAATTAGAACGTTCACA 60.164 36.000 28.78 15.62 0.00 3.58
22 23 5.278604 ACAAGCCAAAATTAGAACGTTCAC 58.721 37.500 28.78 4.89 0.00 3.18
23 24 5.508200 ACAAGCCAAAATTAGAACGTTCA 57.492 34.783 28.78 10.90 0.00 3.18
24 25 7.410407 GCATAACAAGCCAAAATTAGAACGTTC 60.410 37.037 20.71 20.71 0.00 3.95
61 62 1.810532 CTCGGTACCACTCTGCCTC 59.189 63.158 13.54 0.00 0.00 4.70
139 145 1.136363 CGAACGATGACGCATGTTGTT 60.136 47.619 0.00 0.00 43.96 2.83
171 181 4.942761 AAAATATAGTGGCCAAGGCATG 57.057 40.909 7.24 0.00 44.11 4.06
201 217 2.884012 CTGTCAATTAGTGTGGCCAACA 59.116 45.455 7.24 5.29 36.04 3.33
219 235 2.933878 TTCCCTGACGCGCAAACTGT 62.934 55.000 5.73 0.00 0.00 3.55
241 257 1.665599 CGGACAAGGTAACGGCGTT 60.666 57.895 29.36 29.36 46.39 4.84
256 272 2.036098 TCGTACTGGAAGGGCGGA 59.964 61.111 0.00 0.00 39.30 5.54
276 292 0.736325 CGAGTAGACGGGTTGGCTTG 60.736 60.000 0.00 0.00 0.00 4.01
289 2264 2.093973 ACCTTCAAGCACCATCGAGTAG 60.094 50.000 0.00 0.00 0.00 2.57
460 2444 4.217983 CGGTAGGAAGACACTTACTTCTGT 59.782 45.833 1.49 0.00 42.07 3.41
501 2678 7.918033 CGTCACATAGTTATCATCTTTCAGACT 59.082 37.037 0.00 0.00 0.00 3.24
502 2679 7.168302 CCGTCACATAGTTATCATCTTTCAGAC 59.832 40.741 0.00 0.00 0.00 3.51
503 2680 7.203218 CCGTCACATAGTTATCATCTTTCAGA 58.797 38.462 0.00 0.00 0.00 3.27
504 2681 6.074088 GCCGTCACATAGTTATCATCTTTCAG 60.074 42.308 0.00 0.00 0.00 3.02
505 2682 5.753438 GCCGTCACATAGTTATCATCTTTCA 59.247 40.000 0.00 0.00 0.00 2.69
506 2683 5.107837 CGCCGTCACATAGTTATCATCTTTC 60.108 44.000 0.00 0.00 0.00 2.62
507 2684 4.745125 CGCCGTCACATAGTTATCATCTTT 59.255 41.667 0.00 0.00 0.00 2.52
508 2685 4.299155 CGCCGTCACATAGTTATCATCTT 58.701 43.478 0.00 0.00 0.00 2.40
509 2686 3.305403 CCGCCGTCACATAGTTATCATCT 60.305 47.826 0.00 0.00 0.00 2.90
510 2687 2.987149 CCGCCGTCACATAGTTATCATC 59.013 50.000 0.00 0.00 0.00 2.92
511 2688 2.626266 TCCGCCGTCACATAGTTATCAT 59.374 45.455 0.00 0.00 0.00 2.45
512 2689 2.025898 TCCGCCGTCACATAGTTATCA 58.974 47.619 0.00 0.00 0.00 2.15
513 2690 2.787601 TCCGCCGTCACATAGTTATC 57.212 50.000 0.00 0.00 0.00 1.75
514 2691 3.192466 GTTTCCGCCGTCACATAGTTAT 58.808 45.455 0.00 0.00 0.00 1.89
515 2692 2.609350 GTTTCCGCCGTCACATAGTTA 58.391 47.619 0.00 0.00 0.00 2.24
571 2748 3.187637 TGTTCAAAATTAAGACGGAGCCG 59.812 43.478 7.48 7.48 46.03 5.52
648 2827 1.974875 CCCTAACCGGCGCCTTTTT 60.975 57.895 26.68 16.46 0.00 1.94
649 2828 2.360726 CCCTAACCGGCGCCTTTT 60.361 61.111 26.68 19.09 0.00 2.27
656 2835 4.832608 CCTGACGCCCTAACCGGC 62.833 72.222 0.00 0.00 46.13 6.13
657 2836 1.606885 TTACCTGACGCCCTAACCGG 61.607 60.000 0.00 0.00 0.00 5.28
658 2837 0.179119 CTTACCTGACGCCCTAACCG 60.179 60.000 0.00 0.00 0.00 4.44
659 2838 0.177373 CCTTACCTGACGCCCTAACC 59.823 60.000 0.00 0.00 0.00 2.85
665 2844 1.523938 GGATGCCTTACCTGACGCC 60.524 63.158 0.00 0.00 0.00 5.68
703 2908 1.029681 AACGGGATGTGATCGATCGA 58.970 50.000 21.86 21.86 0.00 3.59
728 2933 1.213182 AGTGGCCTACGAGATCTCTCA 59.787 52.381 20.26 7.02 43.00 3.27
729 2934 1.975660 AGTGGCCTACGAGATCTCTC 58.024 55.000 20.26 0.00 39.55 3.20
730 2935 2.445682 AAGTGGCCTACGAGATCTCT 57.554 50.000 20.26 10.02 0.00 3.10
731 2936 2.030628 GCTAAGTGGCCTACGAGATCTC 60.031 54.545 13.05 13.05 0.00 2.75
732 2937 1.957877 GCTAAGTGGCCTACGAGATCT 59.042 52.381 3.32 0.00 0.00 2.75
734 2939 1.409427 GTGCTAAGTGGCCTACGAGAT 59.591 52.381 3.32 0.00 0.00 2.75
736 2941 0.530744 TGTGCTAAGTGGCCTACGAG 59.469 55.000 3.32 5.27 0.00 4.18
737 2942 0.530744 CTGTGCTAAGTGGCCTACGA 59.469 55.000 3.32 0.00 0.00 3.43
738 2943 0.246635 ACTGTGCTAAGTGGCCTACG 59.753 55.000 3.32 0.00 0.00 3.51
739 2944 1.726853 CACTGTGCTAAGTGGCCTAC 58.273 55.000 3.32 0.00 43.22 3.18
746 2951 1.340248 ACTGCGTACACTGTGCTAAGT 59.660 47.619 7.90 2.35 0.00 2.24
748 2953 2.519377 AACTGCGTACACTGTGCTAA 57.481 45.000 7.90 0.00 0.00 3.09
749 2954 3.507786 CATAACTGCGTACACTGTGCTA 58.492 45.455 7.90 0.00 0.00 3.49
750 2955 2.337583 CATAACTGCGTACACTGTGCT 58.662 47.619 7.90 0.00 0.00 4.40
759 3970 0.173935 CCCACGACCATAACTGCGTA 59.826 55.000 0.00 0.00 34.93 4.42
884 4114 1.446966 GCTCGACTGGAGGCTTGAC 60.447 63.158 0.00 0.00 43.36 3.18
894 4124 0.034059 ACTTGGTTGAGGCTCGACTG 59.966 55.000 29.09 21.71 31.43 3.51
899 4129 1.149148 GTTCGACTTGGTTGAGGCTC 58.851 55.000 7.79 7.79 0.00 4.70
900 4130 0.759346 AGTTCGACTTGGTTGAGGCT 59.241 50.000 0.00 0.00 0.00 4.58
902 4132 2.135933 GTGAGTTCGACTTGGTTGAGG 58.864 52.381 0.00 0.00 0.00 3.86
910 4142 2.733593 GCGCGGTGAGTTCGACTT 60.734 61.111 8.83 0.00 0.00 3.01
912 4144 3.764049 GTGCGCGGTGAGTTCGAC 61.764 66.667 8.83 0.00 0.00 4.20
915 4147 2.964925 TGTGTGCGCGGTGAGTTC 60.965 61.111 8.83 0.00 0.00 3.01
944 4176 3.730761 GGCTTGTGTGCTGCCGAG 61.731 66.667 0.00 0.00 37.11 4.63
947 4179 3.368571 GAGGGCTTGTGTGCTGCC 61.369 66.667 0.00 0.00 45.42 4.85
948 4180 3.368571 GGAGGGCTTGTGTGCTGC 61.369 66.667 0.00 0.00 0.00 5.25
951 4183 1.376553 GAGAGGAGGGCTTGTGTGC 60.377 63.158 0.00 0.00 0.00 4.57
952 4184 1.197430 AGGAGAGGAGGGCTTGTGTG 61.197 60.000 0.00 0.00 0.00 3.82
954 4186 0.617249 AGAGGAGAGGAGGGCTTGTG 60.617 60.000 0.00 0.00 0.00 3.33
955 4187 0.325203 GAGAGGAGAGGAGGGCTTGT 60.325 60.000 0.00 0.00 0.00 3.16
956 4188 1.048160 GGAGAGGAGAGGAGGGCTTG 61.048 65.000 0.00 0.00 0.00 4.01
957 4189 1.228215 AGGAGAGGAGAGGAGGGCTT 61.228 60.000 0.00 0.00 0.00 4.35
958 4190 1.625565 AGGAGAGGAGAGGAGGGCT 60.626 63.158 0.00 0.00 0.00 5.19
959 4191 1.152546 GAGGAGAGGAGAGGAGGGC 60.153 68.421 0.00 0.00 0.00 5.19
960 4192 0.478507 GAGAGGAGAGGAGAGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
1057 4289 3.804193 CTTTCTTGGAGGCGCGGC 61.804 66.667 27.06 27.06 0.00 6.53
1689 4933 4.441695 CCGCTCTCGCTGCTCCAA 62.442 66.667 0.00 0.00 0.00 3.53
1857 5101 4.131088 GCGACGAGGGTGGAGTCC 62.131 72.222 0.73 0.73 0.00 3.85
1937 5181 6.072508 CCTGAAATTCAATTGGAGAAACTCGA 60.073 38.462 5.42 0.00 0.00 4.04
1990 5239 5.617609 TCATTTCGCGTTTCTAATGACAAG 58.382 37.500 5.77 0.00 33.41 3.16
2022 5271 2.256174 TCGCCTCGTAACGAATTCAAG 58.744 47.619 6.22 0.00 34.74 3.02
2041 5290 6.802608 TCTGCATTTGAAATCAATCCAGATC 58.197 36.000 12.74 0.00 35.55 2.75
2112 5412 1.000843 CACACATCTCGGGAACTGTGA 59.999 52.381 22.64 0.00 41.11 3.58
2116 5416 1.338107 TCACACACATCTCGGGAACT 58.662 50.000 0.00 0.00 0.00 3.01
2120 5421 1.472201 CCTGATCACACACATCTCGGG 60.472 57.143 0.00 0.00 0.00 5.14
2125 5426 3.931468 CACTTCTCCTGATCACACACATC 59.069 47.826 0.00 0.00 0.00 3.06
2195 5496 5.848036 CGTGAACTGAACATTCAAATCTGAC 59.152 40.000 0.00 0.00 37.80 3.51
2208 5509 4.668686 CGGAGTAGTACTCGTGAACTGAAC 60.669 50.000 21.29 5.30 45.96 3.18
2243 5544 0.179108 CGCTGGAGGCAGTTACTACC 60.179 60.000 0.00 0.00 41.91 3.18
2245 5546 2.199117 CCGCTGGAGGCAGTTACTA 58.801 57.895 0.00 0.00 41.91 1.82
2267 5568 1.380380 GAACATCTTGGGCCCCAGG 60.380 63.158 22.39 5.31 33.81 4.45
2273 5574 6.038050 TGTTTTGAAATTTGAACATCTTGGGC 59.962 34.615 0.00 0.00 0.00 5.36
2395 5696 0.898326 TAGCCGAGCAGACTGACCAA 60.898 55.000 6.65 0.00 0.00 3.67
2444 5745 1.736696 GCGCAGTTAGGCATTGCATTT 60.737 47.619 11.39 0.00 37.69 2.32
2455 5756 2.094894 CAGAGAAATGTGGCGCAGTTAG 59.905 50.000 14.17 1.34 35.34 2.34
2510 5824 1.679139 TCCAACCAAAGCAGTGACAG 58.321 50.000 0.00 0.00 0.00 3.51
2533 5847 0.249238 CTCGTAGACCAGCATCCTGC 60.249 60.000 0.00 0.00 45.46 4.85
2534 5848 1.107114 ACTCGTAGACCAGCATCCTG 58.893 55.000 0.00 0.00 38.85 3.86
2686 6000 7.272084 GCTTTGTTGAACAATCACATATGAGAC 59.728 37.037 11.97 0.00 38.00 3.36
2690 6004 7.542824 TCATGCTTTGTTGAACAATCACATATG 59.457 33.333 11.97 10.50 38.00 1.78
2692 6006 6.979465 TCATGCTTTGTTGAACAATCACATA 58.021 32.000 11.97 0.00 38.00 2.29
2696 6010 8.883954 TTAATTCATGCTTTGTTGAACAATCA 57.116 26.923 11.97 12.76 38.00 2.57
2737 6053 2.584236 TCTCTACTCCTAATCGGCCAC 58.416 52.381 2.24 0.00 0.00 5.01
2773 6089 8.731605 TGCGTCCATAAAATTTGTTATCTACAA 58.268 29.630 0.00 0.00 44.81 2.41
2780 6096 7.436430 TGTAGTGCGTCCATAAAATTTGTTA 57.564 32.000 0.00 0.00 0.00 2.41
2830 6146 0.940126 CAGAGTGACACACCACTTGC 59.060 55.000 8.59 0.00 46.45 4.01
2940 6256 5.046529 CACATCAGTTCTAGATAGTGCACC 58.953 45.833 14.63 0.00 0.00 5.01
2947 6263 7.117285 ACAAGATGCACATCAGTTCTAGATA 57.883 36.000 12.87 0.00 40.22 1.98
2948 6264 5.987098 ACAAGATGCACATCAGTTCTAGAT 58.013 37.500 12.87 0.00 40.22 1.98
2950 6266 5.521735 GGTACAAGATGCACATCAGTTCTAG 59.478 44.000 12.87 0.00 40.22 2.43
2951 6267 5.187772 AGGTACAAGATGCACATCAGTTCTA 59.812 40.000 12.87 0.00 40.22 2.10
3165 6485 3.861840 ACGGTGACATGGAAATCTAGTG 58.138 45.455 0.00 0.00 0.00 2.74
3170 6490 4.701956 AATGAACGGTGACATGGAAATC 57.298 40.909 0.00 0.00 0.00 2.17
3363 6705 0.109597 GAAAACGACGGCGAGTAGGA 60.110 55.000 22.49 0.00 41.64 2.94
3365 6707 1.694639 AAGAAAACGACGGCGAGTAG 58.305 50.000 22.49 3.86 41.64 2.57
3366 6708 2.053627 GAAAGAAAACGACGGCGAGTA 58.946 47.619 22.49 0.00 41.64 2.59
3367 6709 0.857287 GAAAGAAAACGACGGCGAGT 59.143 50.000 22.49 10.76 41.64 4.18
3436 6781 2.640316 AGTTCAGTTCCACTTCCACC 57.360 50.000 0.00 0.00 0.00 4.61
3682 7059 0.668096 GGTGTATGGCAACGACGACA 60.668 55.000 0.00 0.00 42.51 4.35
3709 7086 1.888436 TTGACACTAGGAGCTGCGGG 61.888 60.000 0.00 0.00 0.00 6.13
3711 7088 0.244994 ACTTGACACTAGGAGCTGCG 59.755 55.000 0.00 0.00 0.00 5.18
3719 7096 5.592054 TGAAGAGTTGACACTTGACACTAG 58.408 41.667 0.00 0.00 31.22 2.57
3720 7097 5.592104 TGAAGAGTTGACACTTGACACTA 57.408 39.130 0.00 0.00 31.22 2.74
3722 7099 5.741388 AATGAAGAGTTGACACTTGACAC 57.259 39.130 0.00 0.00 31.22 3.67
3724 7101 4.972440 GCAAATGAAGAGTTGACACTTGAC 59.028 41.667 0.00 0.00 31.22 3.18
3726 7103 4.923893 TGCAAATGAAGAGTTGACACTTG 58.076 39.130 0.00 0.00 31.22 3.16
3727 7104 5.278660 GGATGCAAATGAAGAGTTGACACTT 60.279 40.000 0.00 0.00 31.22 3.16
3728 7105 4.217118 GGATGCAAATGAAGAGTTGACACT 59.783 41.667 0.00 0.00 35.17 3.55
3759 7136 2.421424 GCAAGTTGGAGTTCCTGCATAG 59.579 50.000 4.75 0.00 34.67 2.23
3760 7137 2.436417 GCAAGTTGGAGTTCCTGCATA 58.564 47.619 4.75 0.00 34.67 3.14
3859 7236 3.186047 CCGTTCGTCCGTCCATGC 61.186 66.667 0.00 0.00 0.00 4.06
3874 7251 1.768112 AACGCGAAGGAAACACACCG 61.768 55.000 15.93 0.00 0.00 4.94
3897 7275 2.878406 GCAGTACAAGAACATGTGGTGT 59.122 45.455 0.00 6.83 44.84 4.16
3916 7296 0.100682 GTCCGATCGACTAGCTTGCA 59.899 55.000 18.66 0.00 38.57 4.08
3917 7297 0.595310 GGTCCGATCGACTAGCTTGC 60.595 60.000 18.66 0.00 41.64 4.01
3918 7298 1.002251 GAGGTCCGATCGACTAGCTTG 60.002 57.143 18.66 0.00 41.64 4.01
4034 7429 8.139350 TCCGTTATGTCGATCATATAAAGTTGT 58.861 33.333 8.03 0.00 38.59 3.32
4061 7456 0.391130 TGTGGAAGCGTAGATGCACC 60.391 55.000 0.00 0.41 36.67 5.01
4071 7466 3.938963 ACACAGGTAATATTGTGGAAGCG 59.061 43.478 9.48 0.00 46.83 4.68
4078 7473 6.303839 ACCAAAGTGACACAGGTAATATTGT 58.696 36.000 13.65 0.00 0.00 2.71
4108 7503 1.868498 TCCAACAACTAAAGCGAACCG 59.132 47.619 0.00 0.00 0.00 4.44
4113 7512 2.727916 GCCGAATCCAACAACTAAAGCG 60.728 50.000 0.00 0.00 0.00 4.68
4161 7560 2.355009 GGCAACCACGCAAGCTTG 60.355 61.111 22.44 22.44 45.62 4.01
4191 7590 7.055667 TGAACTTCTGAAGTGAGTAATGAGT 57.944 36.000 22.67 3.94 41.91 3.41
4192 7591 6.090628 GCTGAACTTCTGAAGTGAGTAATGAG 59.909 42.308 22.67 10.96 41.91 2.90
4193 7592 5.928839 GCTGAACTTCTGAAGTGAGTAATGA 59.071 40.000 22.67 0.63 41.91 2.57
4197 7596 3.006967 GGGCTGAACTTCTGAAGTGAGTA 59.993 47.826 22.67 9.32 41.91 2.59
4202 7601 0.759346 ACGGGCTGAACTTCTGAAGT 59.241 50.000 17.00 17.00 45.46 3.01
4224 7623 1.741706 CAATGGCAACTCCTACTGCAG 59.258 52.381 13.48 13.48 40.46 4.41
4228 7627 0.324943 ACGCAATGGCAACTCCTACT 59.675 50.000 0.00 0.00 41.24 2.57
4235 7634 0.110056 CAGAGTGACGCAATGGCAAC 60.110 55.000 0.00 0.00 41.24 4.17
4280 7679 2.079925 GAAGGCATCTCTTTCTTGCGT 58.920 47.619 0.00 0.00 37.25 5.24
4283 7682 4.758674 TCACTTGAAGGCATCTCTTTCTTG 59.241 41.667 0.00 0.00 0.00 3.02
4303 7702 1.519455 CTCATCGGACGGCCTTCAC 60.519 63.158 5.33 0.00 0.00 3.18
4341 7740 1.257743 CTCTTCCCGTGTTCTGGAGA 58.742 55.000 0.00 0.00 30.91 3.71
4345 7744 0.679505 TCCACTCTTCCCGTGTTCTG 59.320 55.000 0.00 0.00 0.00 3.02
4352 7751 0.388649 CGACAGTTCCACTCTTCCCG 60.389 60.000 0.00 0.00 0.00 5.14
4357 7756 2.307768 TCTGTTCGACAGTTCCACTCT 58.692 47.619 12.62 0.00 46.03 3.24
4358 7757 2.795175 TCTGTTCGACAGTTCCACTC 57.205 50.000 12.62 0.00 46.03 3.51
4359 7758 2.693591 TCTTCTGTTCGACAGTTCCACT 59.306 45.455 12.62 0.00 46.03 4.00
4360 7759 3.093717 TCTTCTGTTCGACAGTTCCAC 57.906 47.619 12.62 0.00 46.03 4.02
4361 7760 4.307432 GAATCTTCTGTTCGACAGTTCCA 58.693 43.478 12.62 0.67 46.03 3.53
4362 7761 4.912528 GAATCTTCTGTTCGACAGTTCC 57.087 45.455 12.62 0.00 46.03 3.62
4370 7769 0.108138 AGGCCCGAATCTTCTGTTCG 60.108 55.000 0.00 1.61 45.83 3.95
4371 7770 1.066143 TCAGGCCCGAATCTTCTGTTC 60.066 52.381 0.00 0.00 0.00 3.18
4384 7788 1.153349 GACCGTCAGATTCAGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
4425 7829 1.226717 CGGCGTGGCTCTAAGAGAC 60.227 63.158 0.00 0.00 38.37 3.36
4489 9780 3.701542 TCTAACAGCCCATGTACTCTCAG 59.298 47.826 0.00 0.00 43.00 3.35
4509 9800 5.743636 AAAAGAGAAGACAGCTGAGATCT 57.256 39.130 23.35 18.81 0.00 2.75
4533 9824 1.078324 ACGAAGGAGGGTAGGGAAAGA 59.922 52.381 0.00 0.00 0.00 2.52
4541 9832 1.562942 TGCTAGAGACGAAGGAGGGTA 59.437 52.381 0.00 0.00 0.00 3.69
4543 9834 0.741915 GTGCTAGAGACGAAGGAGGG 59.258 60.000 0.00 0.00 0.00 4.30
4565 9856 0.396139 ACGGTTCGCTACCCCTATGA 60.396 55.000 1.56 0.00 44.70 2.15
4683 9978 3.676291 ATTTTGTTGGGTCCGATTTGG 57.324 42.857 0.00 0.00 40.09 3.28
4697 9992 2.094442 CCGGCGGGTCAATTTATTTTGT 60.094 45.455 20.56 0.00 0.00 2.83
4717 10012 1.372623 GTGACGAACTCCACGGACC 60.373 63.158 0.00 0.00 34.93 4.46
4777 10072 2.165167 CACCTCACCATTGATGCAACT 58.835 47.619 0.00 0.00 0.00 3.16
4791 10086 0.976641 AAGCTGGAATCGACACCTCA 59.023 50.000 10.39 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.