Multiple sequence alignment - TraesCS1A01G184800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G184800 chr1A 100.000 3116 0 0 1 3116 335544221 335541106 0.000000e+00 5755
1 TraesCS1A01G184800 chr1D 97.170 1590 19 5 894 2457 267594625 267596214 0.000000e+00 2663
2 TraesCS1A01G184800 chr1D 90.113 799 31 4 1 767 267593844 267594626 0.000000e+00 994
3 TraesCS1A01G184800 chr1D 88.095 378 42 3 2734 3109 280826292 280825916 2.200000e-121 446
4 TraesCS1A01G184800 chr1D 92.424 264 8 5 2453 2712 267596253 267596508 1.770000e-97 366
5 TraesCS1A01G184800 chr1D 94.382 178 6 2 1 178 267593396 267593569 1.420000e-68 270
6 TraesCS1A01G184800 chr1B 97.040 1588 21 5 894 2457 345409857 345408272 0.000000e+00 2649
7 TraesCS1A01G184800 chr1B 87.179 546 33 8 1 514 345410970 345410430 1.250000e-163 586
8 TraesCS1A01G184800 chr1B 94.203 345 5 5 437 767 345410199 345409856 2.140000e-141 512
9 TraesCS1A01G184800 chr1B 88.064 377 43 2 2734 3108 117248299 117248675 2.200000e-121 446
10 TraesCS1A01G184800 chr1B 93.728 287 9 6 2451 2733 345408195 345407914 3.720000e-114 422
11 TraesCS1A01G184800 chr1B 95.588 136 5 1 765 900 558565927 558565793 1.880000e-52 217
12 TraesCS1A01G184800 chr1B 95.000 80 2 1 437 514 345410354 345410275 1.170000e-24 124
13 TraesCS1A01G184800 chr4A 86.476 1050 137 3 1073 2118 49263178 49262130 0.000000e+00 1147
14 TraesCS1A01G184800 chr4A 95.588 136 5 1 765 900 420515789 420515655 1.880000e-52 217
15 TraesCS1A01G184800 chr4D 86.398 1044 137 3 1073 2112 414146871 414147913 0.000000e+00 1136
16 TraesCS1A01G184800 chr4B 85.714 1050 145 3 1073 2118 510305382 510306430 0.000000e+00 1103
17 TraesCS1A01G184800 chr4B 94.286 140 5 1 759 898 450453465 450453601 8.760000e-51 211
18 TraesCS1A01G184800 chr5B 89.062 384 40 2 2734 3116 401196748 401197130 2.810000e-130 475
19 TraesCS1A01G184800 chr5B 88.095 378 44 1 2734 3110 181189637 181189260 6.130000e-122 448
20 TraesCS1A01G184800 chr5B 95.588 136 5 1 765 900 163065999 163065865 1.880000e-52 217
21 TraesCS1A01G184800 chr2B 87.990 383 46 0 2734 3116 607674667 607674285 1.320000e-123 453
22 TraesCS1A01G184800 chr3D 87.335 379 46 2 2738 3116 128284916 128284540 1.720000e-117 433
23 TraesCS1A01G184800 chr3D 93.103 145 5 4 766 910 443434365 443434226 1.130000e-49 207
24 TraesCS1A01G184800 chr3B 87.533 377 44 3 2734 3109 683793489 683793863 1.720000e-117 433
25 TraesCS1A01G184800 chr3B 87.037 378 47 2 2734 3110 684115516 684115892 2.870000e-115 425
26 TraesCS1A01G184800 chr3B 92.466 146 7 2 755 899 482487441 482487299 4.070000e-49 206
27 TraesCS1A01G184800 chr7B 86.945 383 47 2 2734 3116 92008717 92009096 7.990000e-116 427
28 TraesCS1A01G184800 chr5D 95.556 135 3 1 762 896 361647938 361648069 2.430000e-51 213
29 TraesCS1A01G184800 chrUn 94.286 140 4 2 766 905 11031660 11031795 8.760000e-51 211
30 TraesCS1A01G184800 chr7D 93.662 142 4 4 765 906 599590613 599590477 1.130000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G184800 chr1A 335541106 335544221 3115 True 5755.00 5755 100.00000 1 3116 1 chr1A.!!$R1 3115
1 TraesCS1A01G184800 chr1D 267593396 267596508 3112 False 1073.25 2663 93.52225 1 2712 4 chr1D.!!$F1 2711
2 TraesCS1A01G184800 chr1B 345407914 345410970 3056 True 858.60 2649 93.43000 1 2733 5 chr1B.!!$R2 2732
3 TraesCS1A01G184800 chr4A 49262130 49263178 1048 True 1147.00 1147 86.47600 1073 2118 1 chr4A.!!$R1 1045
4 TraesCS1A01G184800 chr4D 414146871 414147913 1042 False 1136.00 1136 86.39800 1073 2112 1 chr4D.!!$F1 1039
5 TraesCS1A01G184800 chr4B 510305382 510306430 1048 False 1103.00 1103 85.71400 1073 2118 1 chr4B.!!$F2 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 747 0.687354 GGATGCATCCCGTCCTACAT 59.313 55.0 32.15 0.0 44.78 2.29 F
1771 2587 0.537143 AAACTGGCTGCCATTCGACA 60.537 50.0 23.64 0.0 30.82 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2892 0.396435 TTGAACTGATGTCACGCCCT 59.604 50.000 0.0 0.0 0.0 5.19 R
3093 4022 1.135286 GCTCGCTTGCTTTTATTGCCT 60.135 47.619 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 571 1.682451 TTGATCTAGGGTTCGGGGCG 61.682 60.000 0.00 0.00 0.00 6.13
123 572 2.042230 ATCTAGGGTTCGGGGCGT 60.042 61.111 0.00 0.00 0.00 5.68
124 573 2.365095 GATCTAGGGTTCGGGGCGTG 62.365 65.000 0.00 0.00 0.00 5.34
125 574 4.832608 CTAGGGTTCGGGGCGTGC 62.833 72.222 0.00 0.00 0.00 5.34
186 635 2.159282 TGTTCTCCGGTTCGATTAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
187 636 2.054232 TCTCCGGTTCGATTAGAGCT 57.946 50.000 0.00 0.00 0.00 4.09
206 655 2.593468 TAGCAATCGCAGGAGGCACC 62.593 60.000 0.00 0.00 45.17 5.01
226 675 3.244491 ACCATCTATCTTCTGCTCATGCC 60.244 47.826 0.00 0.00 38.71 4.40
230 679 2.955022 ATCTTCTGCTCATGCCCCGC 62.955 60.000 0.00 0.00 38.71 6.13
262 714 5.105063 GGCAAGCAGATTTTGATTTACTCC 58.895 41.667 0.00 0.00 31.89 3.85
295 747 0.687354 GGATGCATCCCGTCCTACAT 59.313 55.000 32.15 0.00 44.78 2.29
308 760 4.319766 CCGTCCTACATAATTTGCAGCATC 60.320 45.833 0.00 0.00 0.00 3.91
310 762 5.008019 CGTCCTACATAATTTGCAGCATCTT 59.992 40.000 0.00 0.00 0.00 2.40
328 780 7.374228 CAGCATCTTGTATGTGTTAATTAAGCG 59.626 37.037 0.00 0.00 0.00 4.68
383 836 5.549742 TTTTGAATCCCTGAACTTGCATT 57.450 34.783 0.00 0.00 0.00 3.56
402 1010 5.405873 TGCATTTGTTGTTGCATAGTCATTG 59.594 36.000 0.00 0.00 43.54 2.82
411 1019 3.538591 TGCATAGTCATTGCTTCAGAGG 58.461 45.455 0.00 0.00 40.77 3.69
478 1111 2.886523 TGCATGCTATGTTTATGCCCTC 59.113 45.455 20.33 0.00 44.91 4.30
679 1485 2.428890 TGGCACTTTCGAAATGTTGGTT 59.571 40.909 11.70 0.00 0.00 3.67
680 1486 3.632604 TGGCACTTTCGAAATGTTGGTTA 59.367 39.130 11.70 0.00 0.00 2.85
681 1487 3.978855 GGCACTTTCGAAATGTTGGTTAC 59.021 43.478 11.70 0.50 0.00 2.50
682 1488 3.978855 GCACTTTCGAAATGTTGGTTACC 59.021 43.478 11.70 0.00 0.00 2.85
683 1489 4.261447 GCACTTTCGAAATGTTGGTTACCT 60.261 41.667 11.70 0.00 0.00 3.08
684 1490 5.735070 GCACTTTCGAAATGTTGGTTACCTT 60.735 40.000 11.70 0.00 0.00 3.50
685 1491 6.270064 CACTTTCGAAATGTTGGTTACCTTT 58.730 36.000 11.70 0.00 0.00 3.11
686 1492 6.416750 CACTTTCGAAATGTTGGTTACCTTTC 59.583 38.462 11.70 3.50 37.76 2.62
687 1493 5.441709 TTCGAAATGTTGGTTACCTTTCC 57.558 39.130 2.07 0.00 37.81 3.13
688 1494 4.721132 TCGAAATGTTGGTTACCTTTCCT 58.279 39.130 2.07 0.00 37.81 3.36
689 1495 4.517453 TCGAAATGTTGGTTACCTTTCCTG 59.483 41.667 2.07 0.00 37.81 3.86
690 1496 4.277423 CGAAATGTTGGTTACCTTTCCTGT 59.723 41.667 2.07 0.00 37.81 4.00
706 1512 9.347240 ACCTTTCCTGTTCATATATTTCTCATG 57.653 33.333 0.00 0.00 0.00 3.07
766 1579 9.554395 TGAACTGAGAGTTTTGTTTATGTCATA 57.446 29.630 0.00 0.00 38.80 2.15
767 1580 9.813080 GAACTGAGAGTTTTGTTTATGTCATAC 57.187 33.333 0.00 0.00 38.80 2.39
768 1581 9.561069 AACTGAGAGTTTTGTTTATGTCATACT 57.439 29.630 0.00 0.00 34.11 2.12
769 1582 9.209175 ACTGAGAGTTTTGTTTATGTCATACTC 57.791 33.333 0.00 0.00 32.31 2.59
770 1583 8.547967 TGAGAGTTTTGTTTATGTCATACTCC 57.452 34.615 6.18 1.15 32.42 3.85
771 1584 7.606456 TGAGAGTTTTGTTTATGTCATACTCCC 59.394 37.037 6.18 0.00 32.42 4.30
772 1585 7.690256 AGAGTTTTGTTTATGTCATACTCCCT 58.310 34.615 6.18 0.00 32.42 4.20
773 1586 7.824779 AGAGTTTTGTTTATGTCATACTCCCTC 59.175 37.037 6.18 0.00 32.42 4.30
774 1587 6.884836 AGTTTTGTTTATGTCATACTCCCTCC 59.115 38.462 0.00 0.00 0.00 4.30
775 1588 6.636454 TTTGTTTATGTCATACTCCCTCCT 57.364 37.500 0.00 0.00 0.00 3.69
776 1589 6.636454 TTGTTTATGTCATACTCCCTCCTT 57.364 37.500 0.00 0.00 0.00 3.36
777 1590 6.235231 TGTTTATGTCATACTCCCTCCTTC 57.765 41.667 0.00 0.00 0.00 3.46
778 1591 5.130477 TGTTTATGTCATACTCCCTCCTTCC 59.870 44.000 0.00 0.00 0.00 3.46
779 1592 2.176247 TGTCATACTCCCTCCTTCCC 57.824 55.000 0.00 0.00 0.00 3.97
780 1593 1.364678 TGTCATACTCCCTCCTTCCCA 59.635 52.381 0.00 0.00 0.00 4.37
781 1594 2.225779 TGTCATACTCCCTCCTTCCCAA 60.226 50.000 0.00 0.00 0.00 4.12
782 1595 2.844348 GTCATACTCCCTCCTTCCCAAA 59.156 50.000 0.00 0.00 0.00 3.28
783 1596 3.115390 TCATACTCCCTCCTTCCCAAAG 58.885 50.000 0.00 0.00 0.00 2.77
784 1597 2.735259 TACTCCCTCCTTCCCAAAGT 57.265 50.000 0.00 0.00 0.00 2.66
785 1598 1.834540 ACTCCCTCCTTCCCAAAGTT 58.165 50.000 0.00 0.00 0.00 2.66
786 1599 1.705745 ACTCCCTCCTTCCCAAAGTTC 59.294 52.381 0.00 0.00 0.00 3.01
787 1600 1.988846 CTCCCTCCTTCCCAAAGTTCT 59.011 52.381 0.00 0.00 0.00 3.01
788 1601 2.376855 CTCCCTCCTTCCCAAAGTTCTT 59.623 50.000 0.00 0.00 0.00 2.52
789 1602 2.108250 TCCCTCCTTCCCAAAGTTCTTG 59.892 50.000 0.00 0.00 0.00 3.02
790 1603 2.158460 CCCTCCTTCCCAAAGTTCTTGT 60.158 50.000 0.00 0.00 0.00 3.16
791 1604 3.149981 CCTCCTTCCCAAAGTTCTTGTC 58.850 50.000 0.00 0.00 0.00 3.18
792 1605 3.181439 CCTCCTTCCCAAAGTTCTTGTCT 60.181 47.826 0.00 0.00 0.00 3.41
793 1606 4.464947 CTCCTTCCCAAAGTTCTTGTCTT 58.535 43.478 0.00 0.00 0.00 3.01
794 1607 5.456186 CCTCCTTCCCAAAGTTCTTGTCTTA 60.456 44.000 0.00 0.00 0.00 2.10
795 1608 5.621193 TCCTTCCCAAAGTTCTTGTCTTAG 58.379 41.667 0.00 0.00 0.00 2.18
796 1609 5.368523 TCCTTCCCAAAGTTCTTGTCTTAGA 59.631 40.000 0.00 0.00 0.00 2.10
797 1610 6.044404 TCCTTCCCAAAGTTCTTGTCTTAGAT 59.956 38.462 0.00 0.00 0.00 1.98
798 1611 6.717084 CCTTCCCAAAGTTCTTGTCTTAGATT 59.283 38.462 0.00 0.00 0.00 2.40
799 1612 7.231519 CCTTCCCAAAGTTCTTGTCTTAGATTT 59.768 37.037 0.00 0.00 0.00 2.17
800 1613 7.510549 TCCCAAAGTTCTTGTCTTAGATTTG 57.489 36.000 0.00 0.00 29.84 2.32
801 1614 7.060421 TCCCAAAGTTCTTGTCTTAGATTTGT 58.940 34.615 0.00 0.00 28.79 2.83
802 1615 7.228706 TCCCAAAGTTCTTGTCTTAGATTTGTC 59.771 37.037 0.00 0.00 28.79 3.18
803 1616 7.229506 CCCAAAGTTCTTGTCTTAGATTTGTCT 59.770 37.037 0.00 0.00 28.79 3.41
804 1617 9.273016 CCAAAGTTCTTGTCTTAGATTTGTCTA 57.727 33.333 0.00 0.00 28.79 2.59
811 1624 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
812 1625 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
813 1626 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
814 1627 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
815 1628 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
816 1629 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
848 1661 8.684973 ACTACTAAAACGTGACTTGATACATC 57.315 34.615 0.00 0.00 0.00 3.06
849 1662 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
850 1663 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
851 1664 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
852 1665 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
853 1666 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
854 1667 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
855 1668 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
856 1669 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
857 1670 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
858 1671 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
859 1672 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
860 1673 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
861 1674 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
862 1675 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
863 1676 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
870 1683 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
871 1684 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
873 1686 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
874 1687 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
882 1695 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
883 1696 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
884 1697 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
885 1698 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
886 1699 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
887 1700 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
888 1701 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
889 1702 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
890 1703 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
891 1704 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
892 1705 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
893 1706 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1023 1836 2.471818 CTGCAGATGTCTGATTCCTCG 58.528 52.381 8.42 0.00 46.59 4.63
1143 1956 2.440796 TATGGCTTGGCTGCTGGC 60.441 61.111 10.40 10.40 40.90 4.85
1762 2578 3.338249 TCTAAGATGACAAACTGGCTGC 58.662 45.455 0.00 0.00 0.00 5.25
1771 2587 0.537143 AAACTGGCTGCCATTCGACA 60.537 50.000 23.64 0.00 30.82 4.35
2076 2892 1.612676 AGTTGCTTGAGATGCAGCAA 58.387 45.000 4.07 4.51 42.68 3.91
2244 3083 2.820178 TGCAGAGGAACCTCAGTATCA 58.180 47.619 20.84 9.18 44.99 2.15
2255 3094 6.864165 GGAACCTCAGTATCATTCTACGATTC 59.136 42.308 0.00 0.00 0.00 2.52
2288 3127 9.544825 GTTATTGTTTATCGTTTTCGTTTGTTG 57.455 29.630 0.00 0.00 44.46 3.33
2297 3136 4.904154 CGTTTTCGTTTGTTGGAGAGAATC 59.096 41.667 0.00 0.00 38.65 2.52
2350 3189 9.650539 ATGCAGATCATATACAGTAGACATTTC 57.349 33.333 0.00 0.00 32.59 2.17
2451 3293 9.256477 ACATATTGTATGTTCGTACTGTAATGG 57.744 33.333 0.00 0.00 0.00 3.16
2545 3470 8.893727 CACTAGATGGAAAAATACCCTTAACAG 58.106 37.037 0.00 0.00 0.00 3.16
2547 3472 7.703058 AGATGGAAAAATACCCTTAACAGTG 57.297 36.000 0.00 0.00 0.00 3.66
2562 3487 8.761689 CCCTTAACAGTGTACTTTATAAGGGTA 58.238 37.037 26.74 0.59 46.79 3.69
2568 3497 9.189156 ACAGTGTACTTTATAAGGGTAATACGA 57.811 33.333 0.00 0.00 0.00 3.43
2657 3586 9.657419 ATGAAGTTTCAAGTTTGTGAATTTTCT 57.343 25.926 0.00 0.00 41.13 2.52
2723 3652 3.373130 GGTTTACGTTAAGATGTCCCAGC 59.627 47.826 0.00 0.00 0.00 4.85
2740 3669 2.908940 CATGCGGCTCCCCCAATC 60.909 66.667 0.00 0.00 0.00 2.67
2741 3670 3.419580 ATGCGGCTCCCCCAATCA 61.420 61.111 0.00 0.00 0.00 2.57
2742 3671 2.771321 ATGCGGCTCCCCCAATCAT 61.771 57.895 0.00 0.00 0.00 2.45
2743 3672 2.908940 GCGGCTCCCCCAATCATG 60.909 66.667 0.00 0.00 0.00 3.07
2744 3673 2.918248 CGGCTCCCCCAATCATGA 59.082 61.111 0.00 0.00 0.00 3.07
2745 3674 1.526917 CGGCTCCCCCAATCATGAC 60.527 63.158 0.00 0.00 0.00 3.06
2746 3675 1.152673 GGCTCCCCCAATCATGACC 60.153 63.158 0.00 0.00 0.00 4.02
2747 3676 1.614711 GCTCCCCCAATCATGACCA 59.385 57.895 0.00 0.00 0.00 4.02
2748 3677 0.753111 GCTCCCCCAATCATGACCAC 60.753 60.000 0.00 0.00 0.00 4.16
2749 3678 0.921896 CTCCCCCAATCATGACCACT 59.078 55.000 0.00 0.00 0.00 4.00
2750 3679 2.126882 CTCCCCCAATCATGACCACTA 58.873 52.381 0.00 0.00 0.00 2.74
2751 3680 1.843851 TCCCCCAATCATGACCACTAC 59.156 52.381 0.00 0.00 0.00 2.73
2752 3681 1.563879 CCCCCAATCATGACCACTACA 59.436 52.381 0.00 0.00 0.00 2.74
2753 3682 2.025416 CCCCCAATCATGACCACTACAA 60.025 50.000 0.00 0.00 0.00 2.41
2754 3683 3.373001 CCCCCAATCATGACCACTACAAT 60.373 47.826 0.00 0.00 0.00 2.71
2755 3684 3.633525 CCCCAATCATGACCACTACAATG 59.366 47.826 0.00 0.00 0.00 2.82
2756 3685 4.525996 CCCAATCATGACCACTACAATGA 58.474 43.478 0.00 0.00 0.00 2.57
2757 3686 4.577693 CCCAATCATGACCACTACAATGAG 59.422 45.833 0.00 0.00 0.00 2.90
2758 3687 5.188434 CCAATCATGACCACTACAATGAGT 58.812 41.667 0.00 0.00 0.00 3.41
2759 3688 6.348498 CCAATCATGACCACTACAATGAGTA 58.652 40.000 0.00 0.00 0.00 2.59
2771 3700 4.890158 ACAATGAGTAGTGGACATGACA 57.110 40.909 0.00 0.00 0.00 3.58
2772 3701 5.227569 ACAATGAGTAGTGGACATGACAA 57.772 39.130 0.00 0.00 0.00 3.18
2773 3702 5.620206 ACAATGAGTAGTGGACATGACAAA 58.380 37.500 0.00 0.00 0.00 2.83
2774 3703 6.061441 ACAATGAGTAGTGGACATGACAAAA 58.939 36.000 0.00 0.00 0.00 2.44
2775 3704 6.716628 ACAATGAGTAGTGGACATGACAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
2776 3705 7.231317 ACAATGAGTAGTGGACATGACAAAATT 59.769 33.333 0.00 0.00 0.00 1.82
2777 3706 6.558771 TGAGTAGTGGACATGACAAAATTG 57.441 37.500 0.00 0.00 0.00 2.32
2778 3707 6.295249 TGAGTAGTGGACATGACAAAATTGA 58.705 36.000 0.00 0.00 0.00 2.57
2779 3708 6.204688 TGAGTAGTGGACATGACAAAATTGAC 59.795 38.462 0.00 0.00 0.00 3.18
2780 3709 6.061441 AGTAGTGGACATGACAAAATTGACA 58.939 36.000 0.00 0.23 37.27 3.58
2781 3710 6.716628 AGTAGTGGACATGACAAAATTGACAT 59.283 34.615 0.00 5.48 42.61 3.06
2782 3711 6.017400 AGTGGACATGACAAAATTGACATC 57.983 37.500 0.00 0.84 40.56 3.06
2783 3712 5.047802 AGTGGACATGACAAAATTGACATCC 60.048 40.000 0.00 8.92 40.56 3.51
2784 3713 4.220382 TGGACATGACAAAATTGACATCCC 59.780 41.667 0.00 11.54 40.56 3.85
2785 3714 4.381932 GGACATGACAAAATTGACATCCCC 60.382 45.833 0.00 8.36 40.56 4.81
2786 3715 4.158786 ACATGACAAAATTGACATCCCCA 58.841 39.130 0.00 0.00 40.56 4.96
2787 3716 4.592351 ACATGACAAAATTGACATCCCCAA 59.408 37.500 0.00 0.00 40.56 4.12
2788 3717 5.071519 ACATGACAAAATTGACATCCCCAAA 59.928 36.000 0.00 0.00 40.56 3.28
2789 3718 4.954875 TGACAAAATTGACATCCCCAAAC 58.045 39.130 0.00 0.00 0.00 2.93
2790 3719 4.653341 TGACAAAATTGACATCCCCAAACT 59.347 37.500 0.00 0.00 0.00 2.66
2791 3720 5.130145 TGACAAAATTGACATCCCCAAACTT 59.870 36.000 0.00 0.00 0.00 2.66
2792 3721 5.610398 ACAAAATTGACATCCCCAAACTTC 58.390 37.500 0.00 0.00 0.00 3.01
2793 3722 5.366477 ACAAAATTGACATCCCCAAACTTCT 59.634 36.000 0.00 0.00 0.00 2.85
2794 3723 6.553100 ACAAAATTGACATCCCCAAACTTCTA 59.447 34.615 0.00 0.00 0.00 2.10
2795 3724 6.840780 AAATTGACATCCCCAAACTTCTAG 57.159 37.500 0.00 0.00 0.00 2.43
2796 3725 4.993705 TTGACATCCCCAAACTTCTAGT 57.006 40.909 0.00 0.00 0.00 2.57
2797 3726 4.993705 TGACATCCCCAAACTTCTAGTT 57.006 40.909 0.00 0.00 40.80 2.24
2799 3728 5.701224 TGACATCCCCAAACTTCTAGTTTT 58.299 37.500 2.22 0.00 45.38 2.43
2800 3729 5.534654 TGACATCCCCAAACTTCTAGTTTTG 59.465 40.000 2.22 0.09 45.38 2.44
2801 3730 5.454966 ACATCCCCAAACTTCTAGTTTTGT 58.545 37.500 2.22 2.33 45.38 2.83
2802 3731 5.301805 ACATCCCCAAACTTCTAGTTTTGTG 59.698 40.000 2.22 0.00 45.38 3.33
2803 3732 4.862371 TCCCCAAACTTCTAGTTTTGTGT 58.138 39.130 2.22 0.00 45.38 3.72
2804 3733 6.003859 TCCCCAAACTTCTAGTTTTGTGTA 57.996 37.500 2.22 0.00 45.38 2.90
2805 3734 6.607019 TCCCCAAACTTCTAGTTTTGTGTAT 58.393 36.000 2.22 0.00 45.38 2.29
2806 3735 7.064229 TCCCCAAACTTCTAGTTTTGTGTATT 58.936 34.615 2.22 0.00 45.38 1.89
2807 3736 8.219178 TCCCCAAACTTCTAGTTTTGTGTATTA 58.781 33.333 2.22 0.00 45.38 0.98
2808 3737 9.020731 CCCCAAACTTCTAGTTTTGTGTATTAT 57.979 33.333 2.22 0.00 45.38 1.28
2812 3741 9.908152 AAACTTCTAGTTTTGTGTATTATTGGC 57.092 29.630 0.00 0.00 45.38 4.52
2813 3742 8.630054 ACTTCTAGTTTTGTGTATTATTGGCA 57.370 30.769 0.00 0.00 0.00 4.92
2814 3743 8.512138 ACTTCTAGTTTTGTGTATTATTGGCAC 58.488 33.333 0.00 0.00 0.00 5.01
2815 3744 7.987750 TCTAGTTTTGTGTATTATTGGCACA 57.012 32.000 0.00 0.00 40.79 4.57
2865 3794 8.836268 AACATCATTACAATCATGCTTTTTGT 57.164 26.923 7.82 7.82 37.37 2.83
2866 3795 8.836268 ACATCATTACAATCATGCTTTTTGTT 57.164 26.923 7.96 0.00 35.37 2.83
2867 3796 8.928733 ACATCATTACAATCATGCTTTTTGTTC 58.071 29.630 7.96 0.00 35.37 3.18
2868 3797 8.927721 CATCATTACAATCATGCTTTTTGTTCA 58.072 29.630 7.96 0.00 35.37 3.18
2869 3798 8.883954 TCATTACAATCATGCTTTTTGTTCAA 57.116 26.923 7.96 0.97 35.37 2.69
2870 3799 8.980610 TCATTACAATCATGCTTTTTGTTCAAG 58.019 29.630 7.96 0.00 35.37 3.02
2871 3800 7.712264 TTACAATCATGCTTTTTGTTCAAGG 57.288 32.000 7.96 0.00 35.37 3.61
2872 3801 5.916318 ACAATCATGCTTTTTGTTCAAGGA 58.084 33.333 0.00 0.00 29.60 3.36
2873 3802 5.987347 ACAATCATGCTTTTTGTTCAAGGAG 59.013 36.000 0.00 0.00 29.60 3.69
2874 3803 6.183360 ACAATCATGCTTTTTGTTCAAGGAGA 60.183 34.615 0.00 0.00 29.60 3.71
2875 3804 6.600882 ATCATGCTTTTTGTTCAAGGAGAT 57.399 33.333 0.00 0.00 0.00 2.75
2876 3805 7.707624 ATCATGCTTTTTGTTCAAGGAGATA 57.292 32.000 0.00 0.00 0.00 1.98
2877 3806 7.707624 TCATGCTTTTTGTTCAAGGAGATAT 57.292 32.000 0.00 0.00 0.00 1.63
2878 3807 7.765307 TCATGCTTTTTGTTCAAGGAGATATC 58.235 34.615 0.00 0.00 0.00 1.63
2879 3808 7.394077 TCATGCTTTTTGTTCAAGGAGATATCA 59.606 33.333 5.32 0.00 0.00 2.15
2880 3809 7.707624 TGCTTTTTGTTCAAGGAGATATCAT 57.292 32.000 5.32 0.00 0.00 2.45
2881 3810 7.541162 TGCTTTTTGTTCAAGGAGATATCATG 58.459 34.615 5.32 0.00 0.00 3.07
2882 3811 6.976925 GCTTTTTGTTCAAGGAGATATCATGG 59.023 38.462 5.32 0.00 0.00 3.66
2883 3812 7.148018 GCTTTTTGTTCAAGGAGATATCATGGA 60.148 37.037 5.32 0.00 0.00 3.41
2884 3813 8.827832 TTTTTGTTCAAGGAGATATCATGGAT 57.172 30.769 5.32 0.00 0.00 3.41
2885 3814 8.455903 TTTTGTTCAAGGAGATATCATGGATC 57.544 34.615 5.32 0.00 0.00 3.36
2886 3815 6.752285 TGTTCAAGGAGATATCATGGATCA 57.248 37.500 5.32 0.00 0.00 2.92
2887 3816 6.528321 TGTTCAAGGAGATATCATGGATCAC 58.472 40.000 5.32 4.92 0.00 3.06
2888 3817 6.328410 TGTTCAAGGAGATATCATGGATCACT 59.672 38.462 5.32 5.91 0.00 3.41
2889 3818 7.147426 TGTTCAAGGAGATATCATGGATCACTT 60.147 37.037 5.32 10.12 0.00 3.16
2890 3819 7.384524 TCAAGGAGATATCATGGATCACTTT 57.615 36.000 5.32 5.01 0.00 2.66
2891 3820 8.496534 TCAAGGAGATATCATGGATCACTTTA 57.503 34.615 5.32 4.59 0.00 1.85
2892 3821 9.109246 TCAAGGAGATATCATGGATCACTTTAT 57.891 33.333 5.32 0.00 0.00 1.40
2925 3854 8.934507 TTCTTTTAACATTCCGTCACAATTTT 57.065 26.923 0.00 0.00 0.00 1.82
2926 3855 8.568732 TCTTTTAACATTCCGTCACAATTTTC 57.431 30.769 0.00 0.00 0.00 2.29
2927 3856 8.191446 TCTTTTAACATTCCGTCACAATTTTCA 58.809 29.630 0.00 0.00 0.00 2.69
2928 3857 7.922505 TTTAACATTCCGTCACAATTTTCAG 57.077 32.000 0.00 0.00 0.00 3.02
2929 3858 5.766150 AACATTCCGTCACAATTTTCAGA 57.234 34.783 0.00 0.00 0.00 3.27
2930 3859 5.964958 ACATTCCGTCACAATTTTCAGAT 57.035 34.783 0.00 0.00 0.00 2.90
2931 3860 6.331369 ACATTCCGTCACAATTTTCAGATT 57.669 33.333 0.00 0.00 0.00 2.40
2932 3861 6.381801 ACATTCCGTCACAATTTTCAGATTC 58.618 36.000 0.00 0.00 0.00 2.52
2933 3862 6.016360 ACATTCCGTCACAATTTTCAGATTCA 60.016 34.615 0.00 0.00 0.00 2.57
2934 3863 5.356882 TCCGTCACAATTTTCAGATTCAC 57.643 39.130 0.00 0.00 0.00 3.18
2935 3864 4.084066 TCCGTCACAATTTTCAGATTCACG 60.084 41.667 0.00 0.00 0.00 4.35
2936 3865 4.084066 CCGTCACAATTTTCAGATTCACGA 60.084 41.667 0.00 0.00 0.00 4.35
2937 3866 5.390885 CCGTCACAATTTTCAGATTCACGAT 60.391 40.000 0.00 0.00 0.00 3.73
2938 3867 6.079763 CGTCACAATTTTCAGATTCACGATT 58.920 36.000 0.00 0.00 0.00 3.34
2939 3868 6.578545 CGTCACAATTTTCAGATTCACGATTT 59.421 34.615 0.00 0.00 0.00 2.17
2940 3869 7.113404 CGTCACAATTTTCAGATTCACGATTTT 59.887 33.333 0.00 0.00 0.00 1.82
2941 3870 8.420189 GTCACAATTTTCAGATTCACGATTTTC 58.580 33.333 0.00 0.00 0.00 2.29
2942 3871 8.134261 TCACAATTTTCAGATTCACGATTTTCA 58.866 29.630 0.00 0.00 0.00 2.69
2943 3872 8.754096 CACAATTTTCAGATTCACGATTTTCAA 58.246 29.630 0.00 0.00 0.00 2.69
2944 3873 8.971321 ACAATTTTCAGATTCACGATTTTCAAG 58.029 29.630 0.00 0.00 0.00 3.02
2945 3874 6.991485 TTTTCAGATTCACGATTTTCAAGC 57.009 33.333 0.00 0.00 0.00 4.01
2946 3875 5.687770 TTCAGATTCACGATTTTCAAGCA 57.312 34.783 0.00 0.00 0.00 3.91
2947 3876 5.687770 TCAGATTCACGATTTTCAAGCAA 57.312 34.783 0.00 0.00 0.00 3.91
2948 3877 6.070897 TCAGATTCACGATTTTCAAGCAAA 57.929 33.333 0.00 0.00 0.00 3.68
2949 3878 6.144854 TCAGATTCACGATTTTCAAGCAAAG 58.855 36.000 0.00 0.00 0.00 2.77
2950 3879 4.919754 AGATTCACGATTTTCAAGCAAAGC 59.080 37.500 0.00 0.00 0.00 3.51
2951 3880 3.988379 TCACGATTTTCAAGCAAAGCT 57.012 38.095 0.00 0.00 42.56 3.74
2953 3882 4.290155 TCACGATTTTCAAGCAAAGCTTC 58.710 39.130 0.00 0.00 46.77 3.86
2954 3883 4.043750 CACGATTTTCAAGCAAAGCTTCA 58.956 39.130 0.00 0.00 46.77 3.02
2955 3884 4.044426 ACGATTTTCAAGCAAAGCTTCAC 58.956 39.130 0.00 0.00 46.77 3.18
2956 3885 4.043750 CGATTTTCAAGCAAAGCTTCACA 58.956 39.130 0.00 0.00 46.77 3.58
2957 3886 4.503734 CGATTTTCAAGCAAAGCTTCACAA 59.496 37.500 0.00 0.00 46.77 3.33
2958 3887 5.005586 CGATTTTCAAGCAAAGCTTCACAAA 59.994 36.000 0.00 2.33 46.77 2.83
2959 3888 5.783100 TTTTCAAGCAAAGCTTCACAAAG 57.217 34.783 0.00 0.00 46.77 2.77
2960 3889 4.717233 TTCAAGCAAAGCTTCACAAAGA 57.283 36.364 0.00 0.00 46.77 2.52
2961 3890 4.924305 TCAAGCAAAGCTTCACAAAGAT 57.076 36.364 0.00 0.00 46.77 2.40
2962 3891 6.389830 TTCAAGCAAAGCTTCACAAAGATA 57.610 33.333 0.00 0.00 46.77 1.98
2963 3892 6.389830 TCAAGCAAAGCTTCACAAAGATAA 57.610 33.333 0.00 0.00 46.77 1.75
2964 3893 6.985117 TCAAGCAAAGCTTCACAAAGATAAT 58.015 32.000 0.00 0.00 46.77 1.28
2965 3894 7.086376 TCAAGCAAAGCTTCACAAAGATAATC 58.914 34.615 0.00 0.00 46.77 1.75
2966 3895 6.830873 AGCAAAGCTTCACAAAGATAATCT 57.169 33.333 0.00 0.00 33.89 2.40
2967 3896 7.928307 AGCAAAGCTTCACAAAGATAATCTA 57.072 32.000 0.00 0.00 33.89 1.98
2968 3897 7.983307 AGCAAAGCTTCACAAAGATAATCTAG 58.017 34.615 0.00 0.00 33.89 2.43
2969 3898 7.609532 AGCAAAGCTTCACAAAGATAATCTAGT 59.390 33.333 0.00 0.00 33.89 2.57
2970 3899 7.695618 GCAAAGCTTCACAAAGATAATCTAGTG 59.304 37.037 0.00 0.00 35.35 2.74
2971 3900 6.917217 AGCTTCACAAAGATAATCTAGTGC 57.083 37.500 0.00 0.00 34.57 4.40
2972 3901 6.409704 AGCTTCACAAAGATAATCTAGTGCA 58.590 36.000 0.00 0.00 34.57 4.57
2973 3902 6.314896 AGCTTCACAAAGATAATCTAGTGCAC 59.685 38.462 9.40 9.40 34.57 4.57
2974 3903 6.314896 GCTTCACAAAGATAATCTAGTGCACT 59.685 38.462 25.12 25.12 34.57 4.40
2975 3904 7.465245 GCTTCACAAAGATAATCTAGTGCACTC 60.465 40.741 25.56 7.32 34.57 3.51
2976 3905 6.935167 TCACAAAGATAATCTAGTGCACTCA 58.065 36.000 25.56 12.09 34.57 3.41
2977 3906 7.386059 TCACAAAGATAATCTAGTGCACTCAA 58.614 34.615 25.56 13.33 34.57 3.02
2978 3907 7.331934 TCACAAAGATAATCTAGTGCACTCAAC 59.668 37.037 25.56 9.06 34.57 3.18
2979 3908 7.332926 CACAAAGATAATCTAGTGCACTCAACT 59.667 37.037 25.56 9.59 29.94 3.16
2980 3909 7.547370 ACAAAGATAATCTAGTGCACTCAACTC 59.453 37.037 25.56 13.45 0.00 3.01
2981 3910 6.782082 AGATAATCTAGTGCACTCAACTCA 57.218 37.500 25.56 3.16 0.00 3.41
2982 3911 6.568869 AGATAATCTAGTGCACTCAACTCAC 58.431 40.000 25.56 11.52 0.00 3.51
2983 3912 4.881019 AATCTAGTGCACTCAACTCACT 57.119 40.909 25.56 0.00 42.89 3.41
2984 3913 5.984695 AATCTAGTGCACTCAACTCACTA 57.015 39.130 25.56 0.59 40.96 2.74
2986 3915 2.447244 AGTGCACTCAACTCACTAGC 57.553 50.000 15.25 0.00 39.08 3.42
2987 3916 1.688735 AGTGCACTCAACTCACTAGCA 59.311 47.619 15.25 0.00 39.08 3.49
2988 3917 2.103094 AGTGCACTCAACTCACTAGCAA 59.897 45.455 15.25 0.00 39.08 3.91
2989 3918 3.070018 GTGCACTCAACTCACTAGCAAT 58.930 45.455 10.32 0.00 31.78 3.56
2990 3919 3.499918 GTGCACTCAACTCACTAGCAATT 59.500 43.478 10.32 0.00 31.78 2.32
2991 3920 3.499537 TGCACTCAACTCACTAGCAATTG 59.500 43.478 0.00 0.00 0.00 2.32
2992 3921 3.120060 GCACTCAACTCACTAGCAATTGG 60.120 47.826 7.72 0.00 0.00 3.16
2993 3922 4.067896 CACTCAACTCACTAGCAATTGGT 58.932 43.478 15.47 15.47 0.00 3.67
2994 3923 4.516698 CACTCAACTCACTAGCAATTGGTT 59.483 41.667 16.43 1.81 0.00 3.67
2995 3924 4.757149 ACTCAACTCACTAGCAATTGGTTC 59.243 41.667 16.43 0.00 0.00 3.62
2996 3925 4.713553 TCAACTCACTAGCAATTGGTTCA 58.286 39.130 16.43 0.00 0.00 3.18
2997 3926 5.316167 TCAACTCACTAGCAATTGGTTCAT 58.684 37.500 16.43 0.00 0.00 2.57
2998 3927 5.412594 TCAACTCACTAGCAATTGGTTCATC 59.587 40.000 16.43 0.00 0.00 2.92
2999 3928 4.910195 ACTCACTAGCAATTGGTTCATCA 58.090 39.130 16.43 0.00 0.00 3.07
3000 3929 5.503927 ACTCACTAGCAATTGGTTCATCAT 58.496 37.500 16.43 0.00 0.00 2.45
3001 3930 6.653020 ACTCACTAGCAATTGGTTCATCATA 58.347 36.000 16.43 0.00 0.00 2.15
3002 3931 7.112122 ACTCACTAGCAATTGGTTCATCATAA 58.888 34.615 16.43 0.00 0.00 1.90
3003 3932 7.776969 ACTCACTAGCAATTGGTTCATCATAAT 59.223 33.333 16.43 0.00 0.00 1.28
3004 3933 8.523915 TCACTAGCAATTGGTTCATCATAATT 57.476 30.769 16.43 0.00 0.00 1.40
3005 3934 8.970020 TCACTAGCAATTGGTTCATCATAATTT 58.030 29.630 16.43 0.00 0.00 1.82
3006 3935 9.027129 CACTAGCAATTGGTTCATCATAATTTG 57.973 33.333 16.43 0.00 0.00 2.32
3007 3936 8.970020 ACTAGCAATTGGTTCATCATAATTTGA 58.030 29.630 16.43 0.00 39.12 2.69
3008 3937 9.976511 CTAGCAATTGGTTCATCATAATTTGAT 57.023 29.630 16.43 0.00 46.27 2.57
3009 3938 8.882415 AGCAATTGGTTCATCATAATTTGATC 57.118 30.769 3.82 0.00 43.40 2.92
3010 3939 8.701895 AGCAATTGGTTCATCATAATTTGATCT 58.298 29.630 3.82 0.00 43.40 2.75
3011 3940 9.321562 GCAATTGGTTCATCATAATTTGATCTT 57.678 29.630 7.72 0.00 43.40 2.40
3030 3959 9.467258 TTGATCTTTTGAAAAGATTAGCAAGTG 57.533 29.630 27.97 0.00 37.14 3.16
3031 3960 8.084073 TGATCTTTTGAAAAGATTAGCAAGTGG 58.916 33.333 27.97 0.00 37.14 4.00
3032 3961 7.581213 TCTTTTGAAAAGATTAGCAAGTGGA 57.419 32.000 15.81 0.00 0.00 4.02
3033 3962 8.181904 TCTTTTGAAAAGATTAGCAAGTGGAT 57.818 30.769 15.81 0.00 0.00 3.41
3034 3963 8.084073 TCTTTTGAAAAGATTAGCAAGTGGATG 58.916 33.333 15.81 0.00 0.00 3.51
3035 3964 7.523293 TTTGAAAAGATTAGCAAGTGGATGA 57.477 32.000 0.00 0.00 0.00 2.92
3036 3965 6.748333 TGAAAAGATTAGCAAGTGGATGAG 57.252 37.500 0.00 0.00 0.00 2.90
3037 3966 5.649395 TGAAAAGATTAGCAAGTGGATGAGG 59.351 40.000 0.00 0.00 0.00 3.86
3038 3967 5.441718 AAAGATTAGCAAGTGGATGAGGA 57.558 39.130 0.00 0.00 0.00 3.71
3039 3968 5.643421 AAGATTAGCAAGTGGATGAGGAT 57.357 39.130 0.00 0.00 0.00 3.24
3040 3969 5.643421 AGATTAGCAAGTGGATGAGGATT 57.357 39.130 0.00 0.00 0.00 3.01
3041 3970 5.619220 AGATTAGCAAGTGGATGAGGATTC 58.381 41.667 0.00 0.00 0.00 2.52
3042 3971 4.842531 TTAGCAAGTGGATGAGGATTCA 57.157 40.909 0.00 0.00 37.81 2.57
3043 3972 3.947612 AGCAAGTGGATGAGGATTCAT 57.052 42.857 0.00 0.00 46.61 2.57
3044 3973 6.499106 TTAGCAAGTGGATGAGGATTCATA 57.501 37.500 0.00 0.00 44.01 2.15
3045 3974 5.579753 AGCAAGTGGATGAGGATTCATAT 57.420 39.130 0.00 0.00 44.01 1.78
3046 3975 5.314529 AGCAAGTGGATGAGGATTCATATG 58.685 41.667 0.00 0.00 44.01 1.78
3047 3976 5.068636 GCAAGTGGATGAGGATTCATATGT 58.931 41.667 1.90 0.00 44.01 2.29
3048 3977 5.180868 GCAAGTGGATGAGGATTCATATGTC 59.819 44.000 1.90 0.00 44.01 3.06
3049 3978 6.531923 CAAGTGGATGAGGATTCATATGTCT 58.468 40.000 1.90 0.00 44.01 3.41
3050 3979 6.760440 AGTGGATGAGGATTCATATGTCTT 57.240 37.500 1.90 0.00 44.01 3.01
3051 3980 7.146715 AGTGGATGAGGATTCATATGTCTTT 57.853 36.000 1.90 0.00 44.01 2.52
3052 3981 8.267620 AGTGGATGAGGATTCATATGTCTTTA 57.732 34.615 1.90 0.00 44.01 1.85
3053 3982 8.153550 AGTGGATGAGGATTCATATGTCTTTAC 58.846 37.037 1.90 0.00 44.01 2.01
3054 3983 8.153550 GTGGATGAGGATTCATATGTCTTTACT 58.846 37.037 1.90 0.00 44.01 2.24
3055 3984 8.717717 TGGATGAGGATTCATATGTCTTTACTT 58.282 33.333 1.90 0.00 44.01 2.24
3056 3985 9.566432 GGATGAGGATTCATATGTCTTTACTTT 57.434 33.333 1.90 0.00 44.01 2.66
3066 3995 9.793259 TCATATGTCTTTACTTTTCTTGTTCCT 57.207 29.630 1.90 0.00 0.00 3.36
3096 4025 7.713764 AATTTTTGAGTGTTGACATTAAGGC 57.286 32.000 0.00 0.00 0.00 4.35
3097 4026 5.843673 TTTTGAGTGTTGACATTAAGGCA 57.156 34.783 0.00 0.00 0.00 4.75
3098 4027 5.843673 TTTGAGTGTTGACATTAAGGCAA 57.156 34.783 0.00 0.00 44.95 4.52
3108 4037 7.887996 TTGACATTAAGGCAATAAAAGCAAG 57.112 32.000 0.00 0.00 41.37 4.01
3109 4038 5.868801 TGACATTAAGGCAATAAAAGCAAGC 59.131 36.000 0.00 0.00 26.55 4.01
3110 4039 4.864247 ACATTAAGGCAATAAAAGCAAGCG 59.136 37.500 0.00 0.00 0.00 4.68
3111 4040 4.775058 TTAAGGCAATAAAAGCAAGCGA 57.225 36.364 0.00 0.00 0.00 4.93
3112 4041 2.927553 AGGCAATAAAAGCAAGCGAG 57.072 45.000 0.00 0.00 0.00 5.03
3113 4042 1.135286 AGGCAATAAAAGCAAGCGAGC 60.135 47.619 0.00 0.00 0.00 5.03
3114 4043 1.402720 GGCAATAAAAGCAAGCGAGCA 60.403 47.619 6.21 0.00 36.85 4.26
3115 4044 2.327568 GCAATAAAAGCAAGCGAGCAA 58.672 42.857 6.21 0.00 36.85 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.326595 TGGAGCAAAATCTACGGGCA 59.673 50.000 0.00 0.00 0.00 5.36
71 520 5.398603 AGAATCGAAGCATATACCTGGAG 57.601 43.478 0.00 0.00 0.00 3.86
186 635 1.144716 TGCCTCCTGCGATTGCTAG 59.855 57.895 6.47 2.17 45.60 3.42
187 636 1.153369 GTGCCTCCTGCGATTGCTA 60.153 57.895 6.47 0.00 45.60 3.49
206 655 3.336468 GGGCATGAGCAGAAGATAGATG 58.664 50.000 0.00 0.00 44.61 2.90
226 675 2.670251 TTGCCAAGGTAACGCGGG 60.670 61.111 12.47 0.00 46.39 6.13
230 679 1.453155 ATCTGCTTGCCAAGGTAACG 58.547 50.000 6.57 0.00 46.39 3.18
262 714 1.644786 GCATCCCCAACGTTTCCTCG 61.645 60.000 0.00 0.00 0.00 4.63
287 739 6.183360 ACAAGATGCTGCAAATTATGTAGGAC 60.183 38.462 6.36 2.41 44.25 3.85
295 747 6.513806 ACACATACAAGATGCTGCAAATTA 57.486 33.333 6.36 0.00 0.00 1.40
308 760 6.465781 CAGCACGCTTAATTAACACATACAAG 59.534 38.462 0.00 0.00 0.00 3.16
310 762 5.672570 GCAGCACGCTTAATTAACACATACA 60.673 40.000 0.00 0.00 37.77 2.29
328 780 3.181488 TGGCACATATAAACATGCAGCAC 60.181 43.478 0.00 0.00 39.92 4.40
383 836 4.852134 AGCAATGACTATGCAACAACAA 57.148 36.364 0.00 0.00 46.22 2.83
435 1043 6.877322 TGCAAGAGTAACCATAGTTAAGTTCC 59.123 38.462 0.00 0.00 40.12 3.62
478 1111 0.833287 CCTACATGGACAGGGGTCAG 59.167 60.000 0.00 0.00 46.17 3.51
504 1297 9.632638 ATTAAGCCTTGTATGATCACATAAGTT 57.367 29.630 9.31 1.70 40.13 2.66
540 1333 5.841957 AGAGCAACACTTTCTTGATGTTT 57.158 34.783 0.00 0.00 34.36 2.83
680 1486 9.347240 CATGAGAAATATATGAACAGGAAAGGT 57.653 33.333 0.00 0.00 0.00 3.50
681 1487 9.565090 TCATGAGAAATATATGAACAGGAAAGG 57.435 33.333 0.00 0.00 0.00 3.11
706 1512 5.026462 CACATGATGAGCGTTGAAAATCTC 58.974 41.667 0.00 0.00 0.00 2.75
766 1579 1.705745 GAACTTTGGGAAGGAGGGAGT 59.294 52.381 0.00 0.00 37.19 3.85
767 1580 1.988846 AGAACTTTGGGAAGGAGGGAG 59.011 52.381 0.00 0.00 37.19 4.30
768 1581 2.108250 CAAGAACTTTGGGAAGGAGGGA 59.892 50.000 0.00 0.00 37.19 4.20
769 1582 2.158460 ACAAGAACTTTGGGAAGGAGGG 60.158 50.000 0.00 0.00 37.19 4.30
770 1583 3.149981 GACAAGAACTTTGGGAAGGAGG 58.850 50.000 0.00 0.00 37.19 4.30
771 1584 4.092116 AGACAAGAACTTTGGGAAGGAG 57.908 45.455 0.00 0.00 37.19 3.69
772 1585 4.519906 AAGACAAGAACTTTGGGAAGGA 57.480 40.909 0.00 0.00 37.19 3.36
773 1586 5.621193 TCTAAGACAAGAACTTTGGGAAGG 58.379 41.667 0.00 0.00 37.19 3.46
774 1587 7.751768 AATCTAAGACAAGAACTTTGGGAAG 57.248 36.000 0.00 0.00 38.87 3.46
775 1588 7.559897 ACAAATCTAAGACAAGAACTTTGGGAA 59.440 33.333 0.00 0.00 33.04 3.97
776 1589 7.060421 ACAAATCTAAGACAAGAACTTTGGGA 58.940 34.615 0.00 0.00 33.04 4.37
777 1590 7.229506 AGACAAATCTAAGACAAGAACTTTGGG 59.770 37.037 0.00 0.00 33.04 4.12
778 1591 8.159344 AGACAAATCTAAGACAAGAACTTTGG 57.841 34.615 0.00 0.00 33.04 3.28
785 1598 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
786 1599 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
787 1600 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
788 1601 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
789 1602 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
790 1603 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
822 1635 9.778993 GATGTATCAAGTCACGTTTTAGTAGTA 57.221 33.333 0.00 0.00 0.00 1.82
823 1636 7.758528 GGATGTATCAAGTCACGTTTTAGTAGT 59.241 37.037 0.00 0.00 0.00 2.73
824 1637 7.044249 CGGATGTATCAAGTCACGTTTTAGTAG 60.044 40.741 0.00 0.00 0.00 2.57
825 1638 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
826 1639 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
827 1640 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
828 1641 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
829 1642 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
830 1643 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
831 1644 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
832 1645 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
833 1646 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
834 1647 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
835 1648 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
836 1649 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
837 1650 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
844 1657 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
845 1658 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
847 1660 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
848 1661 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
856 1669 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
857 1670 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
858 1671 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
859 1672 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
860 1673 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
861 1674 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
862 1675 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
863 1676 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
864 1677 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
865 1678 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
866 1679 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
867 1680 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
868 1681 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
869 1682 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
870 1683 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
871 1684 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
872 1685 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
873 1686 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
874 1687 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
875 1688 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
876 1689 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
877 1690 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
878 1691 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
879 1692 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
880 1693 1.685517 GTAACATACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
881 1694 2.361438 CTGTAACATACTCCCTCCGTCC 59.639 54.545 0.00 0.00 0.00 4.79
882 1695 3.022406 ACTGTAACATACTCCCTCCGTC 58.978 50.000 0.00 0.00 0.00 4.79
883 1696 3.097342 ACTGTAACATACTCCCTCCGT 57.903 47.619 0.00 0.00 0.00 4.69
884 1697 3.568853 CCTACTGTAACATACTCCCTCCG 59.431 52.174 0.00 0.00 0.00 4.63
885 1698 3.321396 GCCTACTGTAACATACTCCCTCC 59.679 52.174 0.00 0.00 0.00 4.30
886 1699 4.216708 AGCCTACTGTAACATACTCCCTC 58.783 47.826 0.00 0.00 0.00 4.30
887 1700 4.216708 GAGCCTACTGTAACATACTCCCT 58.783 47.826 0.00 0.00 0.00 4.20
888 1701 3.321396 GGAGCCTACTGTAACATACTCCC 59.679 52.174 0.00 0.00 37.15 4.30
889 1702 4.038162 CAGGAGCCTACTGTAACATACTCC 59.962 50.000 0.00 0.00 42.25 3.85
890 1703 4.038162 CCAGGAGCCTACTGTAACATACTC 59.962 50.000 2.64 0.00 34.16 2.59
891 1704 3.961408 CCAGGAGCCTACTGTAACATACT 59.039 47.826 2.64 0.00 34.16 2.12
892 1705 3.705072 ACCAGGAGCCTACTGTAACATAC 59.295 47.826 2.64 0.00 34.16 2.39
893 1706 3.990369 ACCAGGAGCCTACTGTAACATA 58.010 45.455 2.64 0.00 34.16 2.29
1023 1836 0.325272 AACCTTCTTTCGAGGGCTCC 59.675 55.000 0.00 0.00 39.91 4.70
1143 1956 4.288670 CAAAGATGCTGACAGGCAATAG 57.711 45.455 4.26 0.00 45.68 1.73
1762 2578 2.545526 CCGGAAGAATCATGTCGAATGG 59.454 50.000 0.00 0.00 0.00 3.16
1771 2587 3.157087 ACAAAGCAACCGGAAGAATCAT 58.843 40.909 9.46 0.00 0.00 2.45
2076 2892 0.396435 TTGAACTGATGTCACGCCCT 59.604 50.000 0.00 0.00 0.00 5.19
2288 3127 1.032014 AGAGCTCAGCGATTCTCTCC 58.968 55.000 17.77 0.00 30.73 3.71
2297 3136 2.837291 AGGCCCTAGAGCTCAGCG 60.837 66.667 17.77 5.09 0.00 5.18
2451 3293 0.803117 GGCTCGCCAAAAAGGTAGTC 59.197 55.000 2.41 0.00 40.61 2.59
2702 3631 3.998341 TGCTGGGACATCTTAACGTAAAC 59.002 43.478 0.00 0.00 38.20 2.01
2723 3652 2.908940 GATTGGGGGAGCCGCATG 60.909 66.667 5.91 0.00 45.64 4.06
2733 3662 3.364460 TTGTAGTGGTCATGATTGGGG 57.636 47.619 0.00 0.00 0.00 4.96
2734 3663 4.525996 TCATTGTAGTGGTCATGATTGGG 58.474 43.478 0.00 0.00 0.00 4.12
2735 3664 5.188434 ACTCATTGTAGTGGTCATGATTGG 58.812 41.667 0.00 0.00 0.00 3.16
2736 3665 7.474398 CTACTCATTGTAGTGGTCATGATTG 57.526 40.000 0.00 0.00 42.68 2.67
2749 3678 5.993748 TGTCATGTCCACTACTCATTGTA 57.006 39.130 0.00 0.00 0.00 2.41
2750 3679 4.890158 TGTCATGTCCACTACTCATTGT 57.110 40.909 0.00 0.00 0.00 2.71
2751 3680 6.558771 TTTTGTCATGTCCACTACTCATTG 57.441 37.500 0.00 0.00 0.00 2.82
2752 3681 7.448161 TCAATTTTGTCATGTCCACTACTCATT 59.552 33.333 0.00 0.00 0.00 2.57
2753 3682 6.942005 TCAATTTTGTCATGTCCACTACTCAT 59.058 34.615 0.00 0.00 0.00 2.90
2754 3683 6.204688 GTCAATTTTGTCATGTCCACTACTCA 59.795 38.462 0.00 0.00 0.00 3.41
2755 3684 6.204688 TGTCAATTTTGTCATGTCCACTACTC 59.795 38.462 0.00 0.00 0.00 2.59
2756 3685 6.061441 TGTCAATTTTGTCATGTCCACTACT 58.939 36.000 0.00 0.00 0.00 2.57
2757 3686 6.312399 TGTCAATTTTGTCATGTCCACTAC 57.688 37.500 0.00 0.00 0.00 2.73
2758 3687 6.150976 GGATGTCAATTTTGTCATGTCCACTA 59.849 38.462 7.58 0.00 37.13 2.74
2759 3688 5.047802 GGATGTCAATTTTGTCATGTCCACT 60.048 40.000 7.58 0.00 37.13 4.00
2760 3689 5.163513 GGATGTCAATTTTGTCATGTCCAC 58.836 41.667 7.58 0.00 37.13 4.02
2761 3690 4.220382 GGGATGTCAATTTTGTCATGTCCA 59.780 41.667 7.58 0.00 37.13 4.02
2762 3691 4.381932 GGGGATGTCAATTTTGTCATGTCC 60.382 45.833 7.58 8.50 37.13 4.02
2763 3692 4.220382 TGGGGATGTCAATTTTGTCATGTC 59.780 41.667 7.58 0.00 37.13 3.06
2764 3693 4.158786 TGGGGATGTCAATTTTGTCATGT 58.841 39.130 7.58 0.00 37.13 3.21
2765 3694 4.804868 TGGGGATGTCAATTTTGTCATG 57.195 40.909 7.58 0.00 37.13 3.07
2766 3695 5.307716 AGTTTGGGGATGTCAATTTTGTCAT 59.692 36.000 3.26 3.26 39.12 3.06
2767 3696 4.653341 AGTTTGGGGATGTCAATTTTGTCA 59.347 37.500 0.00 0.00 0.00 3.58
2768 3697 5.213891 AGTTTGGGGATGTCAATTTTGTC 57.786 39.130 0.00 0.00 0.00 3.18
2769 3698 5.366477 AGAAGTTTGGGGATGTCAATTTTGT 59.634 36.000 0.00 0.00 0.00 2.83
2770 3699 5.857268 AGAAGTTTGGGGATGTCAATTTTG 58.143 37.500 0.00 0.00 0.00 2.44
2771 3700 6.782494 ACTAGAAGTTTGGGGATGTCAATTTT 59.218 34.615 0.00 0.00 0.00 1.82
2772 3701 6.314917 ACTAGAAGTTTGGGGATGTCAATTT 58.685 36.000 0.00 0.00 0.00 1.82
2773 3702 5.892348 ACTAGAAGTTTGGGGATGTCAATT 58.108 37.500 0.00 0.00 0.00 2.32
2774 3703 5.520748 ACTAGAAGTTTGGGGATGTCAAT 57.479 39.130 0.00 0.00 0.00 2.57
2775 3704 4.993705 ACTAGAAGTTTGGGGATGTCAA 57.006 40.909 0.00 0.00 0.00 3.18
2776 3705 4.993705 AACTAGAAGTTTGGGGATGTCA 57.006 40.909 0.00 0.00 34.11 3.58
2777 3706 5.535030 ACAAAACTAGAAGTTTGGGGATGTC 59.465 40.000 16.84 0.00 46.78 3.06
2778 3707 5.301805 CACAAAACTAGAAGTTTGGGGATGT 59.698 40.000 16.84 6.47 43.62 3.06
2779 3708 5.301805 ACACAAAACTAGAAGTTTGGGGATG 59.698 40.000 14.59 7.61 43.62 3.51
2780 3709 5.454966 ACACAAAACTAGAAGTTTGGGGAT 58.545 37.500 14.59 0.00 43.62 3.85
2781 3710 4.862371 ACACAAAACTAGAAGTTTGGGGA 58.138 39.130 14.59 0.00 43.62 4.81
2782 3711 6.894339 ATACACAAAACTAGAAGTTTGGGG 57.106 37.500 18.24 7.48 46.78 4.96
2787 3716 9.073475 TGCCAATAATACACAAAACTAGAAGTT 57.927 29.630 0.00 0.00 40.80 2.66
2788 3717 8.512138 GTGCCAATAATACACAAAACTAGAAGT 58.488 33.333 0.00 0.00 34.43 3.01
2789 3718 8.511321 TGTGCCAATAATACACAAAACTAGAAG 58.489 33.333 0.00 0.00 41.11 2.85
2790 3719 8.397575 TGTGCCAATAATACACAAAACTAGAA 57.602 30.769 0.00 0.00 41.11 2.10
2791 3720 7.987750 TGTGCCAATAATACACAAAACTAGA 57.012 32.000 0.00 0.00 41.11 2.43
2799 3728 6.581171 TGTCAATTGTGCCAATAATACACA 57.419 33.333 5.13 0.00 42.27 3.72
2800 3729 9.579768 TTAATGTCAATTGTGCCAATAATACAC 57.420 29.630 5.13 0.00 34.86 2.90
2808 3737 9.941325 AAATTCTATTAATGTCAATTGTGCCAA 57.059 25.926 5.13 0.00 0.00 4.52
2839 3768 9.926158 ACAAAAAGCATGATTGTAATGATGTTA 57.074 25.926 0.00 0.00 35.63 2.41
2840 3769 8.836268 ACAAAAAGCATGATTGTAATGATGTT 57.164 26.923 0.00 0.00 35.63 2.71
2841 3770 8.836268 AACAAAAAGCATGATTGTAATGATGT 57.164 26.923 0.00 0.00 36.33 3.06
2842 3771 8.927721 TGAACAAAAAGCATGATTGTAATGATG 58.072 29.630 0.00 0.48 36.33 3.07
2843 3772 9.491675 TTGAACAAAAAGCATGATTGTAATGAT 57.508 25.926 0.00 0.00 36.33 2.45
2844 3773 8.883954 TTGAACAAAAAGCATGATTGTAATGA 57.116 26.923 0.00 0.00 36.33 2.57
2845 3774 8.225107 CCTTGAACAAAAAGCATGATTGTAATG 58.775 33.333 0.00 0.00 36.33 1.90
2846 3775 8.149647 TCCTTGAACAAAAAGCATGATTGTAAT 58.850 29.630 0.00 0.00 36.33 1.89
2847 3776 7.495901 TCCTTGAACAAAAAGCATGATTGTAA 58.504 30.769 0.00 0.00 36.33 2.41
2848 3777 7.014134 TCTCCTTGAACAAAAAGCATGATTGTA 59.986 33.333 0.00 0.00 36.33 2.41
2849 3778 5.916318 TCCTTGAACAAAAAGCATGATTGT 58.084 33.333 0.00 0.00 38.85 2.71
2850 3779 6.218019 TCTCCTTGAACAAAAAGCATGATTG 58.782 36.000 0.00 0.00 0.00 2.67
2851 3780 6.409524 TCTCCTTGAACAAAAAGCATGATT 57.590 33.333 0.00 0.00 0.00 2.57
2852 3781 6.600882 ATCTCCTTGAACAAAAAGCATGAT 57.399 33.333 0.00 0.00 0.00 2.45
2853 3782 7.394077 TGATATCTCCTTGAACAAAAAGCATGA 59.606 33.333 3.98 0.00 0.00 3.07
2854 3783 7.541162 TGATATCTCCTTGAACAAAAAGCATG 58.459 34.615 3.98 0.00 0.00 4.06
2855 3784 7.707624 TGATATCTCCTTGAACAAAAAGCAT 57.292 32.000 3.98 0.00 0.00 3.79
2856 3785 7.363181 CCATGATATCTCCTTGAACAAAAAGCA 60.363 37.037 3.98 0.00 0.00 3.91
2857 3786 6.976925 CCATGATATCTCCTTGAACAAAAAGC 59.023 38.462 3.98 0.00 0.00 3.51
2858 3787 8.284945 TCCATGATATCTCCTTGAACAAAAAG 57.715 34.615 3.98 0.00 0.00 2.27
2859 3788 8.827832 ATCCATGATATCTCCTTGAACAAAAA 57.172 30.769 3.98 0.00 0.00 1.94
2860 3789 8.054572 TGATCCATGATATCTCCTTGAACAAAA 58.945 33.333 3.98 0.00 0.00 2.44
2861 3790 7.500227 GTGATCCATGATATCTCCTTGAACAAA 59.500 37.037 3.98 0.00 0.00 2.83
2862 3791 6.994496 GTGATCCATGATATCTCCTTGAACAA 59.006 38.462 3.98 0.00 0.00 2.83
2863 3792 6.328410 AGTGATCCATGATATCTCCTTGAACA 59.672 38.462 3.98 0.00 0.00 3.18
2864 3793 6.767456 AGTGATCCATGATATCTCCTTGAAC 58.233 40.000 3.98 0.00 0.00 3.18
2865 3794 7.384524 AAGTGATCCATGATATCTCCTTGAA 57.615 36.000 3.98 0.00 0.00 2.69
2866 3795 7.384524 AAAGTGATCCATGATATCTCCTTGA 57.615 36.000 3.98 0.00 0.00 3.02
2899 3828 9.541143 AAAATTGTGACGGAATGTTAAAAGAAT 57.459 25.926 0.00 0.00 0.00 2.40
2900 3829 8.934507 AAAATTGTGACGGAATGTTAAAAGAA 57.065 26.923 0.00 0.00 0.00 2.52
2901 3830 8.191446 TGAAAATTGTGACGGAATGTTAAAAGA 58.809 29.630 0.00 0.00 0.00 2.52
2902 3831 8.346476 TGAAAATTGTGACGGAATGTTAAAAG 57.654 30.769 0.00 0.00 0.00 2.27
2903 3832 8.191446 TCTGAAAATTGTGACGGAATGTTAAAA 58.809 29.630 0.00 0.00 0.00 1.52
2904 3833 7.708051 TCTGAAAATTGTGACGGAATGTTAAA 58.292 30.769 0.00 0.00 0.00 1.52
2905 3834 7.265647 TCTGAAAATTGTGACGGAATGTTAA 57.734 32.000 0.00 0.00 0.00 2.01
2906 3835 6.869315 TCTGAAAATTGTGACGGAATGTTA 57.131 33.333 0.00 0.00 0.00 2.41
2907 3836 5.766150 TCTGAAAATTGTGACGGAATGTT 57.234 34.783 0.00 0.00 0.00 2.71
2908 3837 5.964958 ATCTGAAAATTGTGACGGAATGT 57.035 34.783 0.00 0.00 0.00 2.71
2909 3838 6.306356 GTGAATCTGAAAATTGTGACGGAATG 59.694 38.462 0.00 0.00 0.00 2.67
2910 3839 6.381801 GTGAATCTGAAAATTGTGACGGAAT 58.618 36.000 0.00 0.00 0.00 3.01
2911 3840 5.559991 CGTGAATCTGAAAATTGTGACGGAA 60.560 40.000 0.00 0.00 0.00 4.30
2912 3841 4.084066 CGTGAATCTGAAAATTGTGACGGA 60.084 41.667 0.00 0.00 0.00 4.69
2913 3842 4.084066 TCGTGAATCTGAAAATTGTGACGG 60.084 41.667 0.00 0.00 0.00 4.79
2914 3843 5.017484 TCGTGAATCTGAAAATTGTGACG 57.983 39.130 0.00 0.00 0.00 4.35
2915 3844 7.858052 AAATCGTGAATCTGAAAATTGTGAC 57.142 32.000 0.00 0.00 0.00 3.67
2916 3845 8.134261 TGAAAATCGTGAATCTGAAAATTGTGA 58.866 29.630 0.00 0.00 0.00 3.58
2917 3846 8.284557 TGAAAATCGTGAATCTGAAAATTGTG 57.715 30.769 0.00 0.00 0.00 3.33
2918 3847 8.870160 TTGAAAATCGTGAATCTGAAAATTGT 57.130 26.923 0.00 0.00 0.00 2.71
2919 3848 7.948363 GCTTGAAAATCGTGAATCTGAAAATTG 59.052 33.333 0.00 0.00 0.00 2.32
2920 3849 7.652909 TGCTTGAAAATCGTGAATCTGAAAATT 59.347 29.630 0.00 0.00 0.00 1.82
2921 3850 7.147312 TGCTTGAAAATCGTGAATCTGAAAAT 58.853 30.769 0.00 0.00 0.00 1.82
2922 3851 6.502652 TGCTTGAAAATCGTGAATCTGAAAA 58.497 32.000 0.00 0.00 0.00 2.29
2923 3852 6.070897 TGCTTGAAAATCGTGAATCTGAAA 57.929 33.333 0.00 0.00 0.00 2.69
2924 3853 5.687770 TGCTTGAAAATCGTGAATCTGAA 57.312 34.783 0.00 0.00 0.00 3.02
2925 3854 5.687770 TTGCTTGAAAATCGTGAATCTGA 57.312 34.783 0.00 0.00 0.00 3.27
2926 3855 5.164119 GCTTTGCTTGAAAATCGTGAATCTG 60.164 40.000 0.00 0.00 0.00 2.90
2927 3856 4.919754 GCTTTGCTTGAAAATCGTGAATCT 59.080 37.500 0.00 0.00 0.00 2.40
2928 3857 4.919754 AGCTTTGCTTGAAAATCGTGAATC 59.080 37.500 0.00 0.00 33.89 2.52
2929 3858 4.874970 AGCTTTGCTTGAAAATCGTGAAT 58.125 34.783 0.00 0.00 33.89 2.57
2930 3859 4.305989 AGCTTTGCTTGAAAATCGTGAA 57.694 36.364 0.00 0.00 33.89 3.18
2931 3860 3.988379 AGCTTTGCTTGAAAATCGTGA 57.012 38.095 0.00 0.00 33.89 4.35
2943 3872 6.830873 AGATTATCTTTGTGAAGCTTTGCT 57.169 33.333 0.00 0.00 42.56 3.91
2944 3873 7.695618 CACTAGATTATCTTTGTGAAGCTTTGC 59.304 37.037 17.04 0.00 34.18 3.68
2945 3874 7.695618 GCACTAGATTATCTTTGTGAAGCTTTG 59.304 37.037 22.49 3.54 34.18 2.77
2946 3875 7.391554 TGCACTAGATTATCTTTGTGAAGCTTT 59.608 33.333 22.49 0.00 34.18 3.51
2947 3876 6.881065 TGCACTAGATTATCTTTGTGAAGCTT 59.119 34.615 22.49 0.00 34.18 3.74
2948 3877 6.314896 GTGCACTAGATTATCTTTGTGAAGCT 59.685 38.462 22.49 0.00 34.18 3.74
2949 3878 6.314896 AGTGCACTAGATTATCTTTGTGAAGC 59.685 38.462 20.16 13.07 34.18 3.86
2950 3879 7.547019 TGAGTGCACTAGATTATCTTTGTGAAG 59.453 37.037 21.73 8.44 34.18 3.02
2951 3880 7.386059 TGAGTGCACTAGATTATCTTTGTGAA 58.614 34.615 21.73 14.57 34.18 3.18
2952 3881 6.935167 TGAGTGCACTAGATTATCTTTGTGA 58.065 36.000 21.73 11.16 34.18 3.58
2953 3882 7.332926 AGTTGAGTGCACTAGATTATCTTTGTG 59.667 37.037 21.73 17.41 34.87 3.33
2954 3883 7.390027 AGTTGAGTGCACTAGATTATCTTTGT 58.610 34.615 21.73 0.00 0.00 2.83
2955 3884 7.547019 TGAGTTGAGTGCACTAGATTATCTTTG 59.453 37.037 21.73 0.00 0.00 2.77
2956 3885 7.547370 GTGAGTTGAGTGCACTAGATTATCTTT 59.453 37.037 21.73 0.00 0.00 2.52
2957 3886 7.038659 GTGAGTTGAGTGCACTAGATTATCTT 58.961 38.462 21.73 0.00 0.00 2.40
2958 3887 6.379703 AGTGAGTTGAGTGCACTAGATTATCT 59.620 38.462 21.73 11.06 40.79 1.98
2959 3888 6.568869 AGTGAGTTGAGTGCACTAGATTATC 58.431 40.000 21.73 13.45 40.79 1.75
2960 3889 6.537453 AGTGAGTTGAGTGCACTAGATTAT 57.463 37.500 21.73 3.77 40.79 1.28
2961 3890 5.984695 AGTGAGTTGAGTGCACTAGATTA 57.015 39.130 21.73 2.04 40.79 1.75
2962 3891 4.881019 AGTGAGTTGAGTGCACTAGATT 57.119 40.909 21.73 8.04 40.79 2.40
2966 3895 2.890945 TGCTAGTGAGTTGAGTGCACTA 59.109 45.455 21.73 1.24 42.40 2.74
2967 3896 1.688735 TGCTAGTGAGTTGAGTGCACT 59.311 47.619 21.88 21.88 44.38 4.40
2968 3897 2.154854 TGCTAGTGAGTTGAGTGCAC 57.845 50.000 9.40 9.40 0.00 4.57
2969 3898 2.908688 TTGCTAGTGAGTTGAGTGCA 57.091 45.000 0.00 0.00 0.00 4.57
2970 3899 3.120060 CCAATTGCTAGTGAGTTGAGTGC 60.120 47.826 0.00 0.00 0.00 4.40
2971 3900 4.067896 ACCAATTGCTAGTGAGTTGAGTG 58.932 43.478 0.00 0.00 0.00 3.51
2972 3901 4.357918 ACCAATTGCTAGTGAGTTGAGT 57.642 40.909 0.00 0.00 0.00 3.41
2973 3902 4.756642 TGAACCAATTGCTAGTGAGTTGAG 59.243 41.667 0.00 0.00 0.00 3.02
2974 3903 4.713553 TGAACCAATTGCTAGTGAGTTGA 58.286 39.130 0.00 0.00 0.00 3.18
2975 3904 5.181811 TGATGAACCAATTGCTAGTGAGTTG 59.818 40.000 0.00 0.00 0.00 3.16
2976 3905 5.316167 TGATGAACCAATTGCTAGTGAGTT 58.684 37.500 0.00 0.08 0.00 3.01
2977 3906 4.910195 TGATGAACCAATTGCTAGTGAGT 58.090 39.130 0.00 0.00 0.00 3.41
2978 3907 7.558161 TTATGATGAACCAATTGCTAGTGAG 57.442 36.000 0.00 0.00 0.00 3.51
2979 3908 8.523915 AATTATGATGAACCAATTGCTAGTGA 57.476 30.769 0.00 0.00 0.00 3.41
2980 3909 9.027129 CAAATTATGATGAACCAATTGCTAGTG 57.973 33.333 0.00 0.00 0.00 2.74
2981 3910 8.970020 TCAAATTATGATGAACCAATTGCTAGT 58.030 29.630 0.00 0.00 31.50 2.57
3004 3933 9.467258 CACTTGCTAATCTTTTCAAAAGATCAA 57.533 29.630 22.92 20.00 36.07 2.57
3005 3934 8.084073 CCACTTGCTAATCTTTTCAAAAGATCA 58.916 33.333 22.92 15.02 36.07 2.92
3006 3935 8.299570 TCCACTTGCTAATCTTTTCAAAAGATC 58.700 33.333 22.92 12.88 36.07 2.75
3007 3936 8.181904 TCCACTTGCTAATCTTTTCAAAAGAT 57.818 30.769 18.17 18.17 38.55 2.40
3008 3937 7.581213 TCCACTTGCTAATCTTTTCAAAAGA 57.419 32.000 14.99 14.99 0.00 2.52
3009 3938 8.084073 TCATCCACTTGCTAATCTTTTCAAAAG 58.916 33.333 3.20 3.20 0.00 2.27
3010 3939 7.950512 TCATCCACTTGCTAATCTTTTCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
3011 3940 7.309377 CCTCATCCACTTGCTAATCTTTTCAAA 60.309 37.037 0.00 0.00 0.00 2.69
3012 3941 6.151648 CCTCATCCACTTGCTAATCTTTTCAA 59.848 38.462 0.00 0.00 0.00 2.69
3013 3942 5.649395 CCTCATCCACTTGCTAATCTTTTCA 59.351 40.000 0.00 0.00 0.00 2.69
3014 3943 5.882557 TCCTCATCCACTTGCTAATCTTTTC 59.117 40.000 0.00 0.00 0.00 2.29
3015 3944 5.819991 TCCTCATCCACTTGCTAATCTTTT 58.180 37.500 0.00 0.00 0.00 2.27
3016 3945 5.441718 TCCTCATCCACTTGCTAATCTTT 57.558 39.130 0.00 0.00 0.00 2.52
3017 3946 5.643421 ATCCTCATCCACTTGCTAATCTT 57.357 39.130 0.00 0.00 0.00 2.40
3018 3947 5.131642 TGAATCCTCATCCACTTGCTAATCT 59.868 40.000 0.00 0.00 0.00 2.40
3019 3948 5.371526 TGAATCCTCATCCACTTGCTAATC 58.628 41.667 0.00 0.00 0.00 1.75
3020 3949 5.378230 TGAATCCTCATCCACTTGCTAAT 57.622 39.130 0.00 0.00 0.00 1.73
3021 3950 4.842531 TGAATCCTCATCCACTTGCTAA 57.157 40.909 0.00 0.00 0.00 3.09
3022 3951 6.043590 ACATATGAATCCTCATCCACTTGCTA 59.956 38.462 10.38 0.00 41.57 3.49
3023 3952 3.947612 ATGAATCCTCATCCACTTGCT 57.052 42.857 0.00 0.00 37.82 3.91
3024 3953 5.068636 ACATATGAATCCTCATCCACTTGC 58.931 41.667 10.38 0.00 41.57 4.01
3025 3954 6.531923 AGACATATGAATCCTCATCCACTTG 58.468 40.000 10.38 0.00 41.57 3.16
3026 3955 6.760440 AGACATATGAATCCTCATCCACTT 57.240 37.500 10.38 0.00 41.57 3.16
3027 3956 6.760440 AAGACATATGAATCCTCATCCACT 57.240 37.500 10.38 0.00 41.57 4.00
3028 3957 8.153550 AGTAAAGACATATGAATCCTCATCCAC 58.846 37.037 10.38 0.00 41.57 4.02
3029 3958 8.267620 AGTAAAGACATATGAATCCTCATCCA 57.732 34.615 10.38 0.00 41.57 3.41
3030 3959 9.566432 AAAGTAAAGACATATGAATCCTCATCC 57.434 33.333 10.38 0.00 41.57 3.51
3040 3969 9.793259 AGGAACAAGAAAAGTAAAGACATATGA 57.207 29.630 10.38 0.00 0.00 2.15
3070 3999 9.255304 GCCTTAATGTCAACACTCAAAAATTAA 57.745 29.630 0.00 0.00 0.00 1.40
3071 4000 8.417106 TGCCTTAATGTCAACACTCAAAAATTA 58.583 29.630 0.00 0.00 0.00 1.40
3072 4001 7.271511 TGCCTTAATGTCAACACTCAAAAATT 58.728 30.769 0.00 0.00 0.00 1.82
3073 4002 6.815089 TGCCTTAATGTCAACACTCAAAAAT 58.185 32.000 0.00 0.00 0.00 1.82
3074 4003 6.214191 TGCCTTAATGTCAACACTCAAAAA 57.786 33.333 0.00 0.00 0.00 1.94
3075 4004 5.843673 TGCCTTAATGTCAACACTCAAAA 57.156 34.783 0.00 0.00 0.00 2.44
3076 4005 5.843673 TTGCCTTAATGTCAACACTCAAA 57.156 34.783 0.00 0.00 0.00 2.69
3077 4006 7.517614 TTATTGCCTTAATGTCAACACTCAA 57.482 32.000 0.00 0.00 0.00 3.02
3078 4007 7.517614 TTTATTGCCTTAATGTCAACACTCA 57.482 32.000 0.00 0.00 0.00 3.41
3079 4008 7.062255 GCTTTTATTGCCTTAATGTCAACACTC 59.938 37.037 0.00 0.00 0.00 3.51
3080 4009 6.868339 GCTTTTATTGCCTTAATGTCAACACT 59.132 34.615 0.00 0.00 0.00 3.55
3081 4010 6.644592 TGCTTTTATTGCCTTAATGTCAACAC 59.355 34.615 0.00 0.00 0.00 3.32
3082 4011 6.753180 TGCTTTTATTGCCTTAATGTCAACA 58.247 32.000 0.00 0.00 0.00 3.33
3083 4012 7.622048 GCTTGCTTTTATTGCCTTAATGTCAAC 60.622 37.037 0.00 0.00 0.00 3.18
3084 4013 6.368516 GCTTGCTTTTATTGCCTTAATGTCAA 59.631 34.615 0.00 0.00 0.00 3.18
3085 4014 5.868801 GCTTGCTTTTATTGCCTTAATGTCA 59.131 36.000 0.00 0.00 0.00 3.58
3086 4015 5.004726 CGCTTGCTTTTATTGCCTTAATGTC 59.995 40.000 0.00 0.00 0.00 3.06
3087 4016 4.864247 CGCTTGCTTTTATTGCCTTAATGT 59.136 37.500 0.00 0.00 0.00 2.71
3088 4017 5.101628 TCGCTTGCTTTTATTGCCTTAATG 58.898 37.500 0.00 0.00 0.00 1.90
3089 4018 5.323371 TCGCTTGCTTTTATTGCCTTAAT 57.677 34.783 0.00 0.00 0.00 1.40
3090 4019 4.732784 CTCGCTTGCTTTTATTGCCTTAA 58.267 39.130 0.00 0.00 0.00 1.85
3091 4020 3.427503 GCTCGCTTGCTTTTATTGCCTTA 60.428 43.478 0.00 0.00 0.00 2.69
3092 4021 2.672195 GCTCGCTTGCTTTTATTGCCTT 60.672 45.455 0.00 0.00 0.00 4.35
3093 4022 1.135286 GCTCGCTTGCTTTTATTGCCT 60.135 47.619 0.00 0.00 0.00 4.75
3094 4023 1.271876 GCTCGCTTGCTTTTATTGCC 58.728 50.000 0.00 0.00 0.00 4.52
3095 4024 1.981254 TGCTCGCTTGCTTTTATTGC 58.019 45.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.