Multiple sequence alignment - TraesCS1A01G184000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G184000 chr1A 100.000 2693 0 0 1 2693 333912350 333915042 0.000000e+00 4974.0
1 TraesCS1A01G184000 chr1A 98.500 200 2 1 398 597 56602195 56601997 4.270000e-93 351.0
2 TraesCS1A01G184000 chr1B 91.214 1104 51 19 603 1695 370044683 370045751 0.000000e+00 1459.0
3 TraesCS1A01G184000 chr1B 89.053 475 27 12 1717 2189 370045812 370046263 1.400000e-157 566.0
4 TraesCS1A01G184000 chr1B 90.154 325 5 10 2374 2673 370046620 370046942 5.400000e-107 398.0
5 TraesCS1A01G184000 chr1B 88.571 210 12 9 1 208 370044222 370044421 7.450000e-61 244.0
6 TraesCS1A01G184000 chr1B 85.465 172 13 4 233 392 370044505 370044676 4.610000e-38 169.0
7 TraesCS1A01G184000 chr1B 79.894 189 7 8 2185 2372 370046387 370046545 2.830000e-20 110.0
8 TraesCS1A01G184000 chr1D 90.409 1126 60 20 603 1710 268938869 268937774 0.000000e+00 1437.0
9 TraesCS1A01G184000 chr1D 88.745 542 22 13 1717 2241 268937740 268937221 6.330000e-176 627.0
10 TraesCS1A01G184000 chr1D 83.092 414 42 17 1 402 268939266 268938869 4.270000e-93 351.0
11 TraesCS1A01G184000 chr1D 87.742 310 14 3 2392 2677 268937070 268936761 9.230000e-90 340.0
12 TraesCS1A01G184000 chr1D 85.039 127 4 3 2247 2372 268937240 268937128 6.090000e-22 115.0
13 TraesCS1A01G184000 chr6B 97.525 202 5 0 397 598 703748603 703748804 1.980000e-91 346.0
14 TraesCS1A01G184000 chr4A 97.525 202 5 0 397 598 697946150 697946351 1.980000e-91 346.0
15 TraesCS1A01G184000 chr4A 95.305 213 8 2 398 608 588185871 588185659 1.190000e-88 337.0
16 TraesCS1A01G184000 chr4A 83.099 142 14 6 143 280 330100040 330100175 1.310000e-23 121.0
17 TraesCS1A01G184000 chr3A 95.775 213 7 2 398 608 596278384 596278172 2.570000e-90 342.0
18 TraesCS1A01G184000 chr3A 83.571 140 15 7 143 281 72407036 72407168 1.010000e-24 124.0
19 TraesCS1A01G184000 chr2A 97.044 203 6 0 395 597 47564509 47564307 2.570000e-90 342.0
20 TraesCS1A01G184000 chr2A 95.283 212 9 1 388 598 578100078 578100289 4.300000e-88 335.0
21 TraesCS1A01G184000 chr7A 95.305 213 8 2 398 608 550415406 550415618 1.190000e-88 337.0
22 TraesCS1A01G184000 chr4B 93.607 219 14 0 398 616 211717062 211716844 7.190000e-86 327.0
23 TraesCS1A01G184000 chr6D 87.879 132 15 1 143 274 364493713 364493583 1.290000e-33 154.0
24 TraesCS1A01G184000 chr6A 87.200 125 12 2 146 270 263887001 263886881 3.620000e-29 139.0
25 TraesCS1A01G184000 chrUn 83.099 142 14 6 143 280 186737344 186737209 1.310000e-23 121.0
26 TraesCS1A01G184000 chr5D 82.609 138 20 2 143 280 347443864 347443731 4.710000e-23 119.0
27 TraesCS1A01G184000 chr5B 80.303 132 24 2 143 274 17937542 17937671 6.140000e-17 99.0
28 TraesCS1A01G184000 chr3B 84.444 90 11 2 192 281 137608223 137608309 4.780000e-13 86.1
29 TraesCS1A01G184000 chr4D 93.878 49 0 1 1125 1170 497627994 497627946 1.340000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G184000 chr1A 333912350 333915042 2692 False 4974 4974 100.000000 1 2693 1 chr1A.!!$F1 2692
1 TraesCS1A01G184000 chr1B 370044222 370046942 2720 False 491 1459 87.391833 1 2673 6 chr1B.!!$F1 2672
2 TraesCS1A01G184000 chr1D 268936761 268939266 2505 True 574 1437 87.005400 1 2677 5 chr1D.!!$R1 2676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 611 0.032515 TCCCGATGGAGAGGTGCTTA 60.033 55.0 0.0 0.0 35.03 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2138 0.106619 TGCCCTGATGCATGCATACA 60.107 50.0 32.27 26.52 36.04 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.145052 GACAGGTCTTTTGGGACTGAAAT 58.855 43.478 0.00 0.00 36.55 2.17
56 59 6.183347 CAGGTCTTTTGGGACTGAAATAGAT 58.817 40.000 0.00 0.00 36.55 1.98
139 142 5.899120 ACACAGAGTAGTACAGTACATGG 57.101 43.478 13.37 0.00 0.00 3.66
215 218 9.382244 GTCATGTTTTAGTGTATTTGTTCACTC 57.618 33.333 1.08 0.00 42.77 3.51
231 293 5.163764 TGTTCACTCATTTTGATCCGTATGC 60.164 40.000 0.00 0.00 0.00 3.14
291 353 0.745468 GAGCGGAGGTAGGGTAACAG 59.255 60.000 0.00 0.00 39.88 3.16
299 361 2.916934 AGGTAGGGTAACAGGATTTGCA 59.083 45.455 0.00 0.00 39.74 4.08
346 420 3.192466 GTGTGACACGTCCTTACAGTTT 58.808 45.455 0.00 0.00 0.00 2.66
353 427 1.269936 CGTCCTTACAGTTTGGTCGGT 60.270 52.381 0.00 0.00 0.00 4.69
386 466 4.546570 AGATGATGCAAATGCGAATGATG 58.453 39.130 0.00 0.00 45.83 3.07
387 467 4.277423 AGATGATGCAAATGCGAATGATGA 59.723 37.500 0.00 0.00 45.83 2.92
388 468 4.577834 TGATGCAAATGCGAATGATGAT 57.422 36.364 0.00 0.00 45.83 2.45
394 474 6.014608 TGCAAATGCGAATGATGATCATCAC 61.015 40.000 34.83 23.80 46.33 3.06
402 482 2.658285 TGATGATCATCACTTTGGCCC 58.342 47.619 30.27 5.62 42.42 5.80
403 483 1.959282 GATGATCATCACTTTGGCCCC 59.041 52.381 27.30 0.00 37.74 5.80
404 484 0.394216 TGATCATCACTTTGGCCCCG 60.394 55.000 0.00 0.00 0.00 5.73
405 485 0.394352 GATCATCACTTTGGCCCCGT 60.394 55.000 0.00 0.00 0.00 5.28
406 486 0.039618 ATCATCACTTTGGCCCCGTT 59.960 50.000 0.00 0.00 0.00 4.44
407 487 0.178975 TCATCACTTTGGCCCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
408 488 0.038343 CATCACTTTGGCCCCGTTTG 60.038 55.000 0.00 0.00 0.00 2.93
409 489 1.184970 ATCACTTTGGCCCCGTTTGG 61.185 55.000 0.00 0.00 0.00 3.28
410 490 1.830408 CACTTTGGCCCCGTTTGGA 60.830 57.895 0.00 0.00 37.49 3.53
411 491 1.155155 ACTTTGGCCCCGTTTGGAT 59.845 52.632 0.00 0.00 37.49 3.41
412 492 0.898326 ACTTTGGCCCCGTTTGGATC 60.898 55.000 0.00 0.00 37.49 3.36
413 493 0.897863 CTTTGGCCCCGTTTGGATCA 60.898 55.000 0.00 0.00 37.49 2.92
414 494 0.252012 TTTGGCCCCGTTTGGATCAT 60.252 50.000 0.00 0.00 37.49 2.45
415 495 0.969917 TTGGCCCCGTTTGGATCATG 60.970 55.000 0.00 0.00 37.49 3.07
416 496 2.127232 GGCCCCGTTTGGATCATGG 61.127 63.158 0.00 0.00 37.49 3.66
417 497 2.127232 GCCCCGTTTGGATCATGGG 61.127 63.158 2.36 2.36 39.69 4.00
418 498 4.258206 CCCGTTTGGATCATGGGG 57.742 61.111 1.49 0.00 37.49 4.96
419 499 1.306296 CCCGTTTGGATCATGGGGT 59.694 57.895 1.49 0.00 37.49 4.95
420 500 0.324275 CCCGTTTGGATCATGGGGTT 60.324 55.000 1.49 0.00 37.49 4.11
421 501 1.064314 CCCGTTTGGATCATGGGGTTA 60.064 52.381 1.49 0.00 37.49 2.85
422 502 2.297701 CCGTTTGGATCATGGGGTTAG 58.702 52.381 0.00 0.00 37.49 2.34
423 503 2.092646 CCGTTTGGATCATGGGGTTAGA 60.093 50.000 0.00 0.00 37.49 2.10
424 504 3.206150 CGTTTGGATCATGGGGTTAGAG 58.794 50.000 0.00 0.00 0.00 2.43
425 505 2.952310 GTTTGGATCATGGGGTTAGAGC 59.048 50.000 0.00 0.00 0.00 4.09
426 506 2.196742 TGGATCATGGGGTTAGAGCT 57.803 50.000 0.00 0.00 0.00 4.09
427 507 3.344535 TGGATCATGGGGTTAGAGCTA 57.655 47.619 0.00 0.00 0.00 3.32
428 508 3.242867 TGGATCATGGGGTTAGAGCTAG 58.757 50.000 0.00 0.00 0.00 3.42
429 509 3.243724 GGATCATGGGGTTAGAGCTAGT 58.756 50.000 0.00 0.00 0.00 2.57
430 510 3.648545 GGATCATGGGGTTAGAGCTAGTT 59.351 47.826 0.00 0.00 0.00 2.24
431 511 4.103311 GGATCATGGGGTTAGAGCTAGTTT 59.897 45.833 0.00 0.00 0.00 2.66
432 512 4.487714 TCATGGGGTTAGAGCTAGTTTG 57.512 45.455 0.00 0.00 0.00 2.93
433 513 3.199946 TCATGGGGTTAGAGCTAGTTTGG 59.800 47.826 0.00 0.00 0.00 3.28
434 514 1.913419 TGGGGTTAGAGCTAGTTTGGG 59.087 52.381 0.00 0.00 0.00 4.12
435 515 1.914108 GGGGTTAGAGCTAGTTTGGGT 59.086 52.381 0.00 0.00 0.00 4.51
436 516 2.307980 GGGGTTAGAGCTAGTTTGGGTT 59.692 50.000 0.00 0.00 0.00 4.11
437 517 3.520721 GGGGTTAGAGCTAGTTTGGGTTA 59.479 47.826 0.00 0.00 0.00 2.85
438 518 4.383880 GGGGTTAGAGCTAGTTTGGGTTAG 60.384 50.000 0.00 0.00 0.00 2.34
439 519 4.224594 GGGTTAGAGCTAGTTTGGGTTAGT 59.775 45.833 0.00 0.00 0.00 2.24
440 520 5.280368 GGGTTAGAGCTAGTTTGGGTTAGTT 60.280 44.000 0.00 0.00 0.00 2.24
441 521 5.642491 GGTTAGAGCTAGTTTGGGTTAGTTG 59.358 44.000 0.00 0.00 0.00 3.16
442 522 4.287766 AGAGCTAGTTTGGGTTAGTTGG 57.712 45.455 0.00 0.00 0.00 3.77
443 523 3.908103 AGAGCTAGTTTGGGTTAGTTGGA 59.092 43.478 0.00 0.00 0.00 3.53
444 524 4.020128 AGAGCTAGTTTGGGTTAGTTGGAG 60.020 45.833 0.00 0.00 0.00 3.86
445 525 3.009143 AGCTAGTTTGGGTTAGTTGGAGG 59.991 47.826 0.00 0.00 0.00 4.30
446 526 2.287977 AGTTTGGGTTAGTTGGAGGC 57.712 50.000 0.00 0.00 0.00 4.70
447 527 1.780919 AGTTTGGGTTAGTTGGAGGCT 59.219 47.619 0.00 0.00 0.00 4.58
448 528 2.160205 GTTTGGGTTAGTTGGAGGCTC 58.840 52.381 5.78 5.78 0.00 4.70
449 529 1.440618 TTGGGTTAGTTGGAGGCTCA 58.559 50.000 17.69 0.00 0.00 4.26
450 530 1.440618 TGGGTTAGTTGGAGGCTCAA 58.559 50.000 17.69 0.76 0.00 3.02
451 531 1.777878 TGGGTTAGTTGGAGGCTCAAA 59.222 47.619 17.69 8.86 0.00 2.69
452 532 2.378547 TGGGTTAGTTGGAGGCTCAAAT 59.621 45.455 17.69 10.35 0.00 2.32
453 533 3.589735 TGGGTTAGTTGGAGGCTCAAATA 59.410 43.478 17.69 9.40 0.00 1.40
454 534 4.043561 TGGGTTAGTTGGAGGCTCAAATAA 59.956 41.667 17.69 14.31 35.65 1.40
455 535 5.201243 GGGTTAGTTGGAGGCTCAAATAAT 58.799 41.667 17.69 4.65 38.72 1.28
456 536 5.299531 GGGTTAGTTGGAGGCTCAAATAATC 59.700 44.000 17.69 16.24 38.72 1.75
457 537 5.299531 GGTTAGTTGGAGGCTCAAATAATCC 59.700 44.000 17.69 15.35 38.72 3.01
458 538 4.591321 AGTTGGAGGCTCAAATAATCCA 57.409 40.909 17.69 0.00 38.26 3.41
459 539 4.934356 AGTTGGAGGCTCAAATAATCCAA 58.066 39.130 17.69 6.66 45.38 3.53
462 542 5.920193 TGGAGGCTCAAATAATCCAAAAG 57.080 39.130 17.69 0.00 37.12 2.27
463 543 5.332743 TGGAGGCTCAAATAATCCAAAAGT 58.667 37.500 17.69 0.00 37.12 2.66
464 544 6.489603 TGGAGGCTCAAATAATCCAAAAGTA 58.510 36.000 17.69 0.00 37.12 2.24
465 545 7.125391 TGGAGGCTCAAATAATCCAAAAGTAT 58.875 34.615 17.69 0.00 37.12 2.12
466 546 7.285401 TGGAGGCTCAAATAATCCAAAAGTATC 59.715 37.037 17.69 0.00 37.12 2.24
467 547 7.255625 GGAGGCTCAAATAATCCAAAAGTATCC 60.256 40.741 17.69 0.00 0.00 2.59
468 548 7.125391 AGGCTCAAATAATCCAAAAGTATCCA 58.875 34.615 0.00 0.00 0.00 3.41
469 549 7.619302 AGGCTCAAATAATCCAAAAGTATCCAA 59.381 33.333 0.00 0.00 0.00 3.53
470 550 8.257306 GGCTCAAATAATCCAAAAGTATCCAAA 58.743 33.333 0.00 0.00 0.00 3.28
471 551 9.087424 GCTCAAATAATCCAAAAGTATCCAAAC 57.913 33.333 0.00 0.00 0.00 2.93
474 554 9.369904 CAAATAATCCAAAAGTATCCAAACAGG 57.630 33.333 0.00 0.00 39.47 4.00
475 555 7.660030 ATAATCCAAAAGTATCCAAACAGGG 57.340 36.000 0.00 0.00 38.24 4.45
476 556 4.733077 TCCAAAAGTATCCAAACAGGGA 57.267 40.909 0.00 0.00 42.21 4.20
477 557 4.662278 TCCAAAAGTATCCAAACAGGGAG 58.338 43.478 0.00 0.00 41.08 4.30
478 558 3.763897 CCAAAAGTATCCAAACAGGGAGG 59.236 47.826 0.00 0.00 41.08 4.30
479 559 3.739401 AAAGTATCCAAACAGGGAGGG 57.261 47.619 0.00 0.00 41.08 4.30
480 560 2.361085 AGTATCCAAACAGGGAGGGT 57.639 50.000 0.00 0.00 41.08 4.34
481 561 2.644151 AGTATCCAAACAGGGAGGGTT 58.356 47.619 0.00 0.00 41.08 4.11
482 562 3.810623 AGTATCCAAACAGGGAGGGTTA 58.189 45.455 0.00 0.00 41.08 2.85
483 563 3.780850 AGTATCCAAACAGGGAGGGTTAG 59.219 47.826 0.00 0.00 41.08 2.34
484 564 2.426431 TCCAAACAGGGAGGGTTAGA 57.574 50.000 0.00 0.00 38.24 2.10
485 565 2.266279 TCCAAACAGGGAGGGTTAGAG 58.734 52.381 0.00 0.00 38.24 2.43
486 566 1.985895 CCAAACAGGGAGGGTTAGAGT 59.014 52.381 0.00 0.00 0.00 3.24
487 567 2.290323 CCAAACAGGGAGGGTTAGAGTG 60.290 54.545 0.00 0.00 0.00 3.51
488 568 1.657804 AACAGGGAGGGTTAGAGTGG 58.342 55.000 0.00 0.00 0.00 4.00
489 569 0.252742 ACAGGGAGGGTTAGAGTGGG 60.253 60.000 0.00 0.00 0.00 4.61
490 570 0.252742 CAGGGAGGGTTAGAGTGGGT 60.253 60.000 0.00 0.00 0.00 4.51
491 571 0.496841 AGGGAGGGTTAGAGTGGGTT 59.503 55.000 0.00 0.00 0.00 4.11
492 572 1.726352 AGGGAGGGTTAGAGTGGGTTA 59.274 52.381 0.00 0.00 0.00 2.85
493 573 2.117051 GGGAGGGTTAGAGTGGGTTAG 58.883 57.143 0.00 0.00 0.00 2.34
494 574 2.561526 GGGAGGGTTAGAGTGGGTTAGT 60.562 54.545 0.00 0.00 0.00 2.24
495 575 3.179685 GGAGGGTTAGAGTGGGTTAGTT 58.820 50.000 0.00 0.00 0.00 2.24
496 576 3.197333 GGAGGGTTAGAGTGGGTTAGTTC 59.803 52.174 0.00 0.00 0.00 3.01
497 577 4.095211 GAGGGTTAGAGTGGGTTAGTTCT 58.905 47.826 0.00 0.00 0.00 3.01
498 578 5.267587 GAGGGTTAGAGTGGGTTAGTTCTA 58.732 45.833 0.00 0.00 0.00 2.10
499 579 5.851418 AGGGTTAGAGTGGGTTAGTTCTAT 58.149 41.667 0.00 0.00 0.00 1.98
500 580 5.898397 AGGGTTAGAGTGGGTTAGTTCTATC 59.102 44.000 0.00 0.00 0.00 2.08
501 581 5.898397 GGGTTAGAGTGGGTTAGTTCTATCT 59.102 44.000 0.00 0.00 0.00 1.98
502 582 7.065504 GGGTTAGAGTGGGTTAGTTCTATCTA 58.934 42.308 0.00 0.00 0.00 1.98
503 583 7.562821 GGGTTAGAGTGGGTTAGTTCTATCTAA 59.437 40.741 0.00 0.00 0.00 2.10
504 584 8.412456 GGTTAGAGTGGGTTAGTTCTATCTAAC 58.588 40.741 11.46 11.46 45.03 2.34
515 595 6.997942 AGTTCTATCTAACCCAACTATCCC 57.002 41.667 0.00 0.00 0.00 3.85
516 596 5.539193 AGTTCTATCTAACCCAACTATCCCG 59.461 44.000 0.00 0.00 0.00 5.14
517 597 5.329191 TCTATCTAACCCAACTATCCCGA 57.671 43.478 0.00 0.00 0.00 5.14
518 598 5.900437 TCTATCTAACCCAACTATCCCGAT 58.100 41.667 0.00 0.00 0.00 4.18
519 599 4.891992 ATCTAACCCAACTATCCCGATG 57.108 45.455 0.00 0.00 0.00 3.84
520 600 2.969950 TCTAACCCAACTATCCCGATGG 59.030 50.000 0.00 0.00 0.00 3.51
522 602 1.424638 ACCCAACTATCCCGATGGAG 58.575 55.000 0.00 0.00 46.08 3.86
523 603 1.062428 ACCCAACTATCCCGATGGAGA 60.062 52.381 0.00 0.00 46.08 3.71
528 608 0.605589 CTATCCCGATGGAGAGGTGC 59.394 60.000 0.00 0.00 44.71 5.01
529 609 0.188587 TATCCCGATGGAGAGGTGCT 59.811 55.000 0.00 0.00 46.08 4.40
530 610 0.692419 ATCCCGATGGAGAGGTGCTT 60.692 55.000 0.00 0.00 46.08 3.91
531 611 0.032515 TCCCGATGGAGAGGTGCTTA 60.033 55.000 0.00 0.00 35.03 3.09
532 612 1.051812 CCCGATGGAGAGGTGCTTAT 58.948 55.000 0.00 0.00 0.00 1.73
533 613 1.417890 CCCGATGGAGAGGTGCTTATT 59.582 52.381 0.00 0.00 0.00 1.40
534 614 2.158755 CCCGATGGAGAGGTGCTTATTT 60.159 50.000 0.00 0.00 0.00 1.40
535 615 2.874701 CCGATGGAGAGGTGCTTATTTG 59.125 50.000 0.00 0.00 0.00 2.32
536 616 2.874701 CGATGGAGAGGTGCTTATTTGG 59.125 50.000 0.00 0.00 0.00 3.28
537 617 2.806945 TGGAGAGGTGCTTATTTGGG 57.193 50.000 0.00 0.00 0.00 4.12
538 618 1.992557 TGGAGAGGTGCTTATTTGGGT 59.007 47.619 0.00 0.00 0.00 4.51
539 619 2.378547 TGGAGAGGTGCTTATTTGGGTT 59.621 45.455 0.00 0.00 0.00 4.11
540 620 3.589735 TGGAGAGGTGCTTATTTGGGTTA 59.410 43.478 0.00 0.00 0.00 2.85
541 621 4.200092 GGAGAGGTGCTTATTTGGGTTAG 58.800 47.826 0.00 0.00 0.00 2.34
542 622 4.080526 GGAGAGGTGCTTATTTGGGTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
543 623 5.104259 AGAGGTGCTTATTTGGGTTAGAG 57.896 43.478 0.00 0.00 0.00 2.43
544 624 4.536489 AGAGGTGCTTATTTGGGTTAGAGT 59.464 41.667 0.00 0.00 0.00 3.24
545 625 4.589908 AGGTGCTTATTTGGGTTAGAGTG 58.410 43.478 0.00 0.00 0.00 3.51
546 626 3.694566 GGTGCTTATTTGGGTTAGAGTGG 59.305 47.826 0.00 0.00 0.00 4.00
547 627 3.694566 GTGCTTATTTGGGTTAGAGTGGG 59.305 47.826 0.00 0.00 0.00 4.61
548 628 3.332485 TGCTTATTTGGGTTAGAGTGGGT 59.668 43.478 0.00 0.00 0.00 4.51
549 629 4.202631 TGCTTATTTGGGTTAGAGTGGGTT 60.203 41.667 0.00 0.00 0.00 4.11
550 630 5.014333 TGCTTATTTGGGTTAGAGTGGGTTA 59.986 40.000 0.00 0.00 0.00 2.85
551 631 5.589050 GCTTATTTGGGTTAGAGTGGGTTAG 59.411 44.000 0.00 0.00 0.00 2.34
552 632 6.577638 GCTTATTTGGGTTAGAGTGGGTTAGA 60.578 42.308 0.00 0.00 0.00 2.10
553 633 5.853572 ATTTGGGTTAGAGTGGGTTAGAA 57.146 39.130 0.00 0.00 0.00 2.10
554 634 5.649970 TTTGGGTTAGAGTGGGTTAGAAA 57.350 39.130 0.00 0.00 0.00 2.52
555 635 5.649970 TTGGGTTAGAGTGGGTTAGAAAA 57.350 39.130 0.00 0.00 0.00 2.29
556 636 5.853572 TGGGTTAGAGTGGGTTAGAAAAT 57.146 39.130 0.00 0.00 0.00 1.82
557 637 6.956102 TGGGTTAGAGTGGGTTAGAAAATA 57.044 37.500 0.00 0.00 0.00 1.40
558 638 7.332433 TGGGTTAGAGTGGGTTAGAAAATAA 57.668 36.000 0.00 0.00 0.00 1.40
559 639 7.170277 TGGGTTAGAGTGGGTTAGAAAATAAC 58.830 38.462 0.00 0.00 0.00 1.89
560 640 7.017850 TGGGTTAGAGTGGGTTAGAAAATAACT 59.982 37.037 0.00 0.00 0.00 2.24
561 641 7.551974 GGGTTAGAGTGGGTTAGAAAATAACTC 59.448 40.741 0.00 0.00 34.21 3.01
562 642 8.319881 GGTTAGAGTGGGTTAGAAAATAACTCT 58.680 37.037 7.50 7.50 43.79 3.24
590 670 8.690680 CTCTAACTGTGTTAGAGTATCCAAAC 57.309 38.462 26.67 0.00 41.73 2.93
591 671 8.185506 TCTAACTGTGTTAGAGTATCCAAACA 57.814 34.615 14.02 0.00 38.63 2.83
592 672 8.304596 TCTAACTGTGTTAGAGTATCCAAACAG 58.695 37.037 14.02 0.00 40.68 3.16
593 673 5.794894 ACTGTGTTAGAGTATCCAAACAGG 58.205 41.667 0.00 0.00 40.68 4.00
594 674 5.160607 TGTGTTAGAGTATCCAAACAGGG 57.839 43.478 0.00 0.00 40.68 4.45
595 675 3.939592 GTGTTAGAGTATCCAAACAGGGC 59.060 47.826 0.00 0.00 40.68 5.19
596 676 3.054655 TGTTAGAGTATCCAAACAGGGCC 60.055 47.826 0.00 0.00 36.81 5.80
597 677 1.668826 AGAGTATCCAAACAGGGCCA 58.331 50.000 6.18 0.00 38.24 5.36
598 678 1.992557 AGAGTATCCAAACAGGGCCAA 59.007 47.619 6.18 0.00 38.24 4.52
599 679 2.025887 AGAGTATCCAAACAGGGCCAAG 60.026 50.000 6.18 0.00 38.24 3.61
600 680 1.005924 AGTATCCAAACAGGGCCAAGG 59.994 52.381 6.18 0.00 38.24 3.61
601 681 1.080638 TATCCAAACAGGGCCAAGGT 58.919 50.000 6.18 0.00 38.24 3.50
614 694 2.706190 GGCCAAGGTCTATATCCACTGT 59.294 50.000 0.00 0.00 0.00 3.55
615 695 3.901844 GGCCAAGGTCTATATCCACTGTA 59.098 47.826 0.00 0.00 0.00 2.74
616 696 4.021016 GGCCAAGGTCTATATCCACTGTAG 60.021 50.000 0.00 0.00 0.00 2.74
623 703 6.879993 AGGTCTATATCCACTGTAGTACGATG 59.120 42.308 0.00 0.00 0.00 3.84
661 741 9.371136 GTATAATTCTCGAGCATATTTGGATGA 57.629 33.333 7.81 0.00 0.00 2.92
672 752 8.338072 AGCATATTTGGATGAAATTTTGCAAA 57.662 26.923 8.05 8.05 40.75 3.68
688 769 0.595095 CAAAGGCAACAGTCTGCTCC 59.405 55.000 0.00 0.00 42.25 4.70
735 819 2.424601 CCTACATGGTGTGGAATTGCAG 59.575 50.000 0.00 0.00 29.57 4.41
819 903 1.733399 GAGACGTCAACCGGTCTGC 60.733 63.158 19.50 0.00 42.24 4.26
848 932 0.954452 CTCTTTTCCCACACAGCCAC 59.046 55.000 0.00 0.00 0.00 5.01
851 935 2.937959 TTTTCCCACACAGCCACCCC 62.938 60.000 0.00 0.00 0.00 4.95
884 968 4.441634 CCCTTATATTATCTTCCTCGCCGG 60.442 50.000 0.00 0.00 0.00 6.13
991 1093 2.126618 TCGCGCACCGTCAACTAG 60.127 61.111 8.75 0.00 38.35 2.57
992 1094 3.179265 CGCGCACCGTCAACTAGG 61.179 66.667 8.75 0.00 0.00 3.02
993 1095 2.048503 GCGCACCGTCAACTAGGT 60.049 61.111 0.30 0.00 42.34 3.08
1074 1176 2.652496 GCGTCCATCGAGCGTCTC 60.652 66.667 0.00 0.00 42.86 3.36
1123 1225 1.294659 CTCCTTCAACAGCTCCACGC 61.295 60.000 0.00 0.00 39.57 5.34
1298 1400 3.674050 GACAGCCCCTCCTCCCGTA 62.674 68.421 0.00 0.00 0.00 4.02
1305 1407 3.584052 CTCCTCCCGTACGAGCCG 61.584 72.222 18.76 0.00 0.00 5.52
1306 1408 4.100084 TCCTCCCGTACGAGCCGA 62.100 66.667 18.76 3.88 0.00 5.54
1323 1425 3.949031 GAGCATCGTGTCCTACTCC 57.051 57.895 0.00 0.00 0.00 3.85
1324 1426 1.394618 GAGCATCGTGTCCTACTCCT 58.605 55.000 0.00 0.00 0.00 3.69
1325 1427 2.573369 GAGCATCGTGTCCTACTCCTA 58.427 52.381 0.00 0.00 0.00 2.94
1326 1428 2.291190 GAGCATCGTGTCCTACTCCTAC 59.709 54.545 0.00 0.00 0.00 3.18
1327 1429 2.022195 GCATCGTGTCCTACTCCTACA 58.978 52.381 0.00 0.00 0.00 2.74
1328 1430 2.223525 GCATCGTGTCCTACTCCTACAC 60.224 54.545 0.00 0.00 40.05 2.90
1329 1431 2.119801 TCGTGTCCTACTCCTACACC 57.880 55.000 0.00 0.00 40.28 4.16
1330 1432 1.352017 TCGTGTCCTACTCCTACACCA 59.648 52.381 0.00 0.00 40.28 4.17
1334 1436 1.135170 GTCCTACTCCTACACCAACGC 60.135 57.143 0.00 0.00 0.00 4.84
1677 1779 0.839946 AGAAATCCATCCAGGGACGG 59.160 55.000 0.00 0.00 40.44 4.79
1702 1804 2.670251 CCGTGTAGGCCGGCAAAA 60.670 61.111 30.85 9.98 38.85 2.44
1707 1852 1.132453 GTGTAGGCCGGCAAAAAGATC 59.868 52.381 30.85 8.01 0.00 2.75
1709 1854 0.746563 TAGGCCGGCAAAAAGATCGG 60.747 55.000 30.85 0.00 44.70 4.18
1714 1859 0.804989 CGGCAAAAAGATCGGCTTCT 59.195 50.000 0.00 0.00 35.24 2.85
1715 1860 2.006888 CGGCAAAAAGATCGGCTTCTA 58.993 47.619 0.00 0.00 35.24 2.10
1770 1915 8.315391 AGTGTATAGCGTATACGTTATGAAGA 57.685 34.615 32.26 17.44 43.68 2.87
1774 1919 9.604626 GTATAGCGTATACGTTATGAAGAAAGT 57.395 33.333 32.26 14.90 43.68 2.66
1778 1923 8.347771 AGCGTATACGTTATGAAGAAAGTATGA 58.652 33.333 25.04 0.00 42.22 2.15
1779 1924 9.125906 GCGTATACGTTATGAAGAAAGTATGAT 57.874 33.333 25.04 0.00 42.22 2.45
1828 1974 4.120792 TGTGAAGCATTTTGAACAAGCA 57.879 36.364 0.00 0.00 0.00 3.91
1829 1975 3.864583 TGTGAAGCATTTTGAACAAGCAC 59.135 39.130 0.00 0.00 0.00 4.40
1830 1976 3.061006 GTGAAGCATTTTGAACAAGCACG 60.061 43.478 0.00 0.00 0.00 5.34
1831 1977 2.869233 AGCATTTTGAACAAGCACGT 57.131 40.000 0.00 0.00 0.00 4.49
1857 2003 2.789409 ACCTTGTGATGAAGCTACCC 57.211 50.000 0.00 0.00 0.00 3.69
1876 2022 1.146041 GTCACTGTCACTGTGCCCA 59.854 57.895 9.88 1.52 34.16 5.36
1938 2094 1.751924 AGATACGCACTTCTGTCCTCC 59.248 52.381 0.00 0.00 0.00 4.30
1999 2155 6.151480 TGTTAATATGTATGCATGCATCAGGG 59.849 38.462 35.35 0.00 37.82 4.45
2034 2190 3.206964 TGCGTTAGGTCAACAAACATCA 58.793 40.909 0.00 0.00 36.92 3.07
2040 2196 7.411274 CGTTAGGTCAACAAACATCAACTTAA 58.589 34.615 0.00 0.00 36.92 1.85
2041 2197 8.073768 CGTTAGGTCAACAAACATCAACTTAAT 58.926 33.333 0.00 0.00 36.92 1.40
2042 2198 9.744468 GTTAGGTCAACAAACATCAACTTAATT 57.256 29.630 0.00 0.00 37.09 1.40
2101 2262 2.124901 CCCCGGCAAGACGCATTA 60.125 61.111 0.00 0.00 45.17 1.90
2102 2263 2.469516 CCCCGGCAAGACGCATTAC 61.470 63.158 0.00 0.00 45.17 1.89
2103 2264 1.449601 CCCGGCAAGACGCATTACT 60.450 57.895 0.00 0.00 45.17 2.24
2119 2280 6.205853 ACGCATTACTAAACTCATTCAAACCA 59.794 34.615 0.00 0.00 0.00 3.67
2120 2281 6.742718 CGCATTACTAAACTCATTCAAACCAG 59.257 38.462 0.00 0.00 0.00 4.00
2121 2282 6.528072 GCATTACTAAACTCATTCAAACCAGC 59.472 38.462 0.00 0.00 0.00 4.85
2122 2283 7.575720 GCATTACTAAACTCATTCAAACCAGCT 60.576 37.037 0.00 0.00 0.00 4.24
2123 2284 5.695851 ACTAAACTCATTCAAACCAGCTG 57.304 39.130 6.78 6.78 0.00 4.24
2205 2494 4.509230 ACATATAGCTGCACAGTTGATTCG 59.491 41.667 1.02 0.00 0.00 3.34
2245 2534 1.135170 GTCAGCCAGGGTAAGACGTAC 60.135 57.143 0.00 0.00 0.00 3.67
2246 2535 1.183549 CAGCCAGGGTAAGACGTACT 58.816 55.000 0.00 0.00 32.80 2.73
2247 2536 1.134560 CAGCCAGGGTAAGACGTACTC 59.865 57.143 0.00 0.00 32.74 2.59
2248 2537 0.459078 GCCAGGGTAAGACGTACTCC 59.541 60.000 0.00 0.00 33.05 3.85
2249 2538 1.843368 CCAGGGTAAGACGTACTCCA 58.157 55.000 0.00 0.00 33.05 3.86
2250 2539 1.749634 CCAGGGTAAGACGTACTCCAG 59.250 57.143 0.00 0.00 33.05 3.86
2251 2540 2.444421 CAGGGTAAGACGTACTCCAGT 58.556 52.381 0.00 0.00 33.05 4.00
2252 2541 2.422832 CAGGGTAAGACGTACTCCAGTC 59.577 54.545 0.00 0.00 33.05 3.51
2253 2542 2.040813 AGGGTAAGACGTACTCCAGTCA 59.959 50.000 0.00 0.00 39.67 3.41
2254 2543 2.422832 GGGTAAGACGTACTCCAGTCAG 59.577 54.545 0.00 0.00 39.67 3.51
2255 2544 2.159407 GGTAAGACGTACTCCAGTCAGC 60.159 54.545 0.00 0.00 39.67 4.26
2256 2545 0.889306 AAGACGTACTCCAGTCAGCC 59.111 55.000 0.00 0.00 39.67 4.85
2257 2546 0.251209 AGACGTACTCCAGTCAGCCA 60.251 55.000 0.00 0.00 39.67 4.75
2258 2547 0.171455 GACGTACTCCAGTCAGCCAG 59.829 60.000 0.00 0.00 37.34 4.85
2259 2548 1.251527 ACGTACTCCAGTCAGCCAGG 61.252 60.000 0.00 0.00 0.00 4.45
2260 2549 0.965866 CGTACTCCAGTCAGCCAGGA 60.966 60.000 0.00 0.00 0.00 3.86
2262 2551 4.126908 CTCCAGTCAGCCAGGAGT 57.873 61.111 0.00 0.00 43.11 3.85
2263 2552 3.289797 CTCCAGTCAGCCAGGAGTA 57.710 57.895 0.00 0.00 43.11 2.59
2304 2593 2.676632 TACGGACAATACGGTGCAAT 57.323 45.000 0.00 0.00 35.23 3.56
2305 2594 1.365699 ACGGACAATACGGTGCAATC 58.634 50.000 0.00 0.00 35.23 2.67
2306 2595 1.066430 ACGGACAATACGGTGCAATCT 60.066 47.619 0.00 0.00 35.23 2.40
2307 2596 2.166870 ACGGACAATACGGTGCAATCTA 59.833 45.455 0.00 0.00 35.23 1.98
2308 2597 3.181469 ACGGACAATACGGTGCAATCTAT 60.181 43.478 0.00 0.00 35.23 1.98
2309 2598 3.428870 CGGACAATACGGTGCAATCTATC 59.571 47.826 0.00 0.00 0.00 2.08
2310 2599 4.632153 GGACAATACGGTGCAATCTATCT 58.368 43.478 0.00 0.00 0.00 1.98
2311 2600 4.686554 GGACAATACGGTGCAATCTATCTC 59.313 45.833 0.00 0.00 0.00 2.75
2312 2601 5.509840 GGACAATACGGTGCAATCTATCTCT 60.510 44.000 0.00 0.00 0.00 3.10
2313 2602 5.292765 ACAATACGGTGCAATCTATCTCTG 58.707 41.667 0.00 0.00 0.00 3.35
2314 2603 2.231215 ACGGTGCAATCTATCTCTGC 57.769 50.000 0.00 0.00 36.60 4.26
2315 2604 1.482182 ACGGTGCAATCTATCTCTGCA 59.518 47.619 0.00 0.00 43.54 4.41
2316 2605 2.093500 ACGGTGCAATCTATCTCTGCAA 60.093 45.455 0.00 0.00 46.91 4.08
2372 2666 7.468922 TCGAACTTGCAGAGTAATATCATTG 57.531 36.000 2.60 0.00 37.72 2.82
2397 2764 0.465705 TGCAATTAGGCGGGAGAGAG 59.534 55.000 0.00 0.00 36.28 3.20
2398 2765 0.753262 GCAATTAGGCGGGAGAGAGA 59.247 55.000 0.00 0.00 0.00 3.10
2414 2801 5.046950 GGAGAGAGAGAGAGAGAGAGGATAC 60.047 52.000 0.00 0.00 0.00 2.24
2435 2822 1.290955 GACATGGACCGTTCACCGA 59.709 57.895 0.00 0.00 39.56 4.69
2563 2980 1.153549 GCTCTCCAAGGGCACGTAG 60.154 63.158 0.00 0.00 0.00 3.51
2631 3048 3.160545 CGCATGTAAACGTGAACATTCC 58.839 45.455 12.08 6.95 34.12 3.01
2677 3094 3.442273 TGCAAAAATAGAATGGACCCGTC 59.558 43.478 0.00 0.00 0.00 4.79
2678 3095 3.486875 GCAAAAATAGAATGGACCCGTCG 60.487 47.826 0.00 0.00 0.00 5.12
2679 3096 1.949465 AAATAGAATGGACCCGTCGC 58.051 50.000 0.00 0.00 0.00 5.19
2680 3097 0.106149 AATAGAATGGACCCGTCGCC 59.894 55.000 0.00 0.00 0.00 5.54
2681 3098 1.755393 ATAGAATGGACCCGTCGCCC 61.755 60.000 0.00 0.00 0.00 6.13
2692 3109 4.832608 GTCGCCCGTGGGATGGTC 62.833 72.222 9.72 0.00 37.50 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.703007 AGACCTGTCAAAGACAAGCTCT 59.297 45.455 1.19 0.00 42.26 4.09
61 64 9.270640 TGGGAAAGACAAATAACAAAATGAATG 57.729 29.630 0.00 0.00 0.00 2.67
62 65 9.271828 GTGGGAAAGACAAATAACAAAATGAAT 57.728 29.630 0.00 0.00 0.00 2.57
63 66 8.482128 AGTGGGAAAGACAAATAACAAAATGAA 58.518 29.630 0.00 0.00 0.00 2.57
64 67 7.925483 CAGTGGGAAAGACAAATAACAAAATGA 59.075 33.333 0.00 0.00 0.00 2.57
117 120 4.158025 GCCATGTACTGTACTACTCTGTGT 59.842 45.833 17.98 0.00 0.00 3.72
120 123 4.157840 TGTGCCATGTACTGTACTACTCTG 59.842 45.833 17.98 8.24 0.00 3.35
126 129 3.762407 TTGTGTGCCATGTACTGTACT 57.238 42.857 17.98 2.36 0.00 2.73
127 130 4.215399 ACATTTGTGTGCCATGTACTGTAC 59.785 41.667 10.98 10.98 29.07 2.90
128 131 4.393834 ACATTTGTGTGCCATGTACTGTA 58.606 39.130 0.00 0.00 29.07 2.74
129 132 3.221771 ACATTTGTGTGCCATGTACTGT 58.778 40.909 0.00 0.00 29.07 3.55
130 133 3.921119 ACATTTGTGTGCCATGTACTG 57.079 42.857 0.00 0.00 29.07 2.74
139 142 7.584987 AGTTAGAACATCTTACATTTGTGTGC 58.415 34.615 0.00 0.00 29.13 4.57
167 170 9.923143 ATGACGATATACATCCGATTTAGAAAA 57.077 29.630 0.00 0.00 0.00 2.29
188 191 8.067784 AGTGAACAAATACACTAAAACATGACG 58.932 33.333 0.00 0.00 44.06 4.35
215 218 9.897744 AATATAAACTGCATACGGATCAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
220 223 8.669946 TTTCAATATAAACTGCATACGGATCA 57.330 30.769 0.00 0.00 0.00 2.92
252 314 9.168451 TCCGCTCACAAATATAAGATGTTTTTA 57.832 29.630 0.00 0.00 0.00 1.52
274 336 0.685458 TCCTGTTACCCTACCTCCGC 60.685 60.000 0.00 0.00 0.00 5.54
291 353 7.463251 GCTCTAAATTTCGTCATTTGCAAATCC 60.463 37.037 21.70 13.82 0.00 3.01
299 361 6.575162 AGGTTGCTCTAAATTTCGTCATTT 57.425 33.333 0.00 1.23 0.00 2.32
339 413 2.694628 ACTACACACCGACCAAACTGTA 59.305 45.455 0.00 0.00 0.00 2.74
346 420 4.281435 TCATCTAAAACTACACACCGACCA 59.719 41.667 0.00 0.00 0.00 4.02
353 427 7.028962 GCATTTGCATCATCTAAAACTACACA 58.971 34.615 0.00 0.00 41.59 3.72
386 466 0.394352 ACGGGGCCAAAGTGATGATC 60.394 55.000 4.39 0.00 0.00 2.92
387 467 0.039618 AACGGGGCCAAAGTGATGAT 59.960 50.000 4.39 0.00 0.00 2.45
388 468 0.178975 AAACGGGGCCAAAGTGATGA 60.179 50.000 4.39 0.00 0.00 2.92
394 474 0.897863 TGATCCAAACGGGGCCAAAG 60.898 55.000 4.39 0.00 37.22 2.77
401 481 0.324275 AACCCCATGATCCAAACGGG 60.324 55.000 0.00 0.00 36.59 5.28
402 482 2.092646 TCTAACCCCATGATCCAAACGG 60.093 50.000 0.00 0.00 0.00 4.44
403 483 3.206150 CTCTAACCCCATGATCCAAACG 58.794 50.000 0.00 0.00 0.00 3.60
404 484 2.952310 GCTCTAACCCCATGATCCAAAC 59.048 50.000 0.00 0.00 0.00 2.93
405 485 2.852449 AGCTCTAACCCCATGATCCAAA 59.148 45.455 0.00 0.00 0.00 3.28
406 486 2.492025 AGCTCTAACCCCATGATCCAA 58.508 47.619 0.00 0.00 0.00 3.53
407 487 2.196742 AGCTCTAACCCCATGATCCA 57.803 50.000 0.00 0.00 0.00 3.41
408 488 3.243724 ACTAGCTCTAACCCCATGATCC 58.756 50.000 0.00 0.00 0.00 3.36
409 489 4.965200 AACTAGCTCTAACCCCATGATC 57.035 45.455 0.00 0.00 0.00 2.92
410 490 4.141390 CCAAACTAGCTCTAACCCCATGAT 60.141 45.833 0.00 0.00 0.00 2.45
411 491 3.199946 CCAAACTAGCTCTAACCCCATGA 59.800 47.826 0.00 0.00 0.00 3.07
412 492 3.545703 CCAAACTAGCTCTAACCCCATG 58.454 50.000 0.00 0.00 0.00 3.66
413 493 2.509964 CCCAAACTAGCTCTAACCCCAT 59.490 50.000 0.00 0.00 0.00 4.00
414 494 1.913419 CCCAAACTAGCTCTAACCCCA 59.087 52.381 0.00 0.00 0.00 4.96
415 495 1.914108 ACCCAAACTAGCTCTAACCCC 59.086 52.381 0.00 0.00 0.00 4.95
416 496 3.715638 AACCCAAACTAGCTCTAACCC 57.284 47.619 0.00 0.00 0.00 4.11
417 497 5.417754 ACTAACCCAAACTAGCTCTAACC 57.582 43.478 0.00 0.00 0.00 2.85
418 498 5.642491 CCAACTAACCCAAACTAGCTCTAAC 59.358 44.000 0.00 0.00 0.00 2.34
419 499 5.544948 TCCAACTAACCCAAACTAGCTCTAA 59.455 40.000 0.00 0.00 0.00 2.10
420 500 5.088730 TCCAACTAACCCAAACTAGCTCTA 58.911 41.667 0.00 0.00 0.00 2.43
421 501 3.908103 TCCAACTAACCCAAACTAGCTCT 59.092 43.478 0.00 0.00 0.00 4.09
422 502 4.254492 CTCCAACTAACCCAAACTAGCTC 58.746 47.826 0.00 0.00 0.00 4.09
423 503 3.009143 CCTCCAACTAACCCAAACTAGCT 59.991 47.826 0.00 0.00 0.00 3.32
424 504 3.344515 CCTCCAACTAACCCAAACTAGC 58.655 50.000 0.00 0.00 0.00 3.42
425 505 3.009143 AGCCTCCAACTAACCCAAACTAG 59.991 47.826 0.00 0.00 0.00 2.57
426 506 2.983898 AGCCTCCAACTAACCCAAACTA 59.016 45.455 0.00 0.00 0.00 2.24
427 507 1.780919 AGCCTCCAACTAACCCAAACT 59.219 47.619 0.00 0.00 0.00 2.66
428 508 2.160205 GAGCCTCCAACTAACCCAAAC 58.840 52.381 0.00 0.00 0.00 2.93
429 509 1.777878 TGAGCCTCCAACTAACCCAAA 59.222 47.619 0.00 0.00 0.00 3.28
430 510 1.440618 TGAGCCTCCAACTAACCCAA 58.559 50.000 0.00 0.00 0.00 4.12
431 511 1.440618 TTGAGCCTCCAACTAACCCA 58.559 50.000 0.00 0.00 0.00 4.51
432 512 2.579410 TTTGAGCCTCCAACTAACCC 57.421 50.000 0.00 0.00 0.00 4.11
433 513 5.299531 GGATTATTTGAGCCTCCAACTAACC 59.700 44.000 0.00 0.00 28.54 2.85
434 514 5.885912 TGGATTATTTGAGCCTCCAACTAAC 59.114 40.000 0.00 0.00 33.19 2.34
435 515 6.073447 TGGATTATTTGAGCCTCCAACTAA 57.927 37.500 0.00 0.00 33.19 2.24
436 516 5.708736 TGGATTATTTGAGCCTCCAACTA 57.291 39.130 0.00 0.00 33.19 2.24
437 517 4.591321 TGGATTATTTGAGCCTCCAACT 57.409 40.909 0.00 0.00 33.19 3.16
438 518 5.659440 TTTGGATTATTTGAGCCTCCAAC 57.341 39.130 1.97 0.00 43.67 3.77
439 519 5.779771 ACTTTTGGATTATTTGAGCCTCCAA 59.220 36.000 0.00 0.00 42.63 3.53
440 520 5.332743 ACTTTTGGATTATTTGAGCCTCCA 58.667 37.500 0.00 0.00 34.27 3.86
441 521 5.921962 ACTTTTGGATTATTTGAGCCTCC 57.078 39.130 0.00 0.00 0.00 4.30
442 522 7.285401 TGGATACTTTTGGATTATTTGAGCCTC 59.715 37.037 0.00 0.00 37.61 4.70
443 523 7.125391 TGGATACTTTTGGATTATTTGAGCCT 58.875 34.615 0.00 0.00 37.61 4.58
444 524 7.346751 TGGATACTTTTGGATTATTTGAGCC 57.653 36.000 0.00 0.00 37.61 4.70
445 525 9.087424 GTTTGGATACTTTTGGATTATTTGAGC 57.913 33.333 0.00 0.00 37.61 4.26
448 528 9.369904 CCTGTTTGGATACTTTTGGATTATTTG 57.630 33.333 0.00 0.00 38.35 2.32
449 529 8.539544 CCCTGTTTGGATACTTTTGGATTATTT 58.460 33.333 0.00 0.00 38.35 1.40
450 530 7.898636 TCCCTGTTTGGATACTTTTGGATTATT 59.101 33.333 0.00 0.00 38.35 1.40
451 531 7.418378 TCCCTGTTTGGATACTTTTGGATTAT 58.582 34.615 0.00 0.00 38.35 1.28
452 532 6.795590 TCCCTGTTTGGATACTTTTGGATTA 58.204 36.000 0.00 0.00 38.35 1.75
453 533 5.650283 TCCCTGTTTGGATACTTTTGGATT 58.350 37.500 0.00 0.00 38.35 3.01
454 534 5.264395 CTCCCTGTTTGGATACTTTTGGAT 58.736 41.667 0.00 0.00 38.35 3.41
455 535 4.508405 CCTCCCTGTTTGGATACTTTTGGA 60.508 45.833 0.00 0.00 38.35 3.53
456 536 3.763897 CCTCCCTGTTTGGATACTTTTGG 59.236 47.826 0.00 0.00 38.35 3.28
457 537 3.763897 CCCTCCCTGTTTGGATACTTTTG 59.236 47.826 0.00 0.00 38.35 2.44
458 538 3.401342 ACCCTCCCTGTTTGGATACTTTT 59.599 43.478 0.00 0.00 38.35 2.27
459 539 2.993863 ACCCTCCCTGTTTGGATACTTT 59.006 45.455 0.00 0.00 38.35 2.66
460 540 2.644151 ACCCTCCCTGTTTGGATACTT 58.356 47.619 0.00 0.00 38.35 2.24
461 541 2.361085 ACCCTCCCTGTTTGGATACT 57.639 50.000 0.00 0.00 38.35 2.12
462 542 3.778629 TCTAACCCTCCCTGTTTGGATAC 59.221 47.826 0.00 0.00 38.35 2.24
463 543 4.037927 CTCTAACCCTCCCTGTTTGGATA 58.962 47.826 0.00 0.00 38.35 2.59
464 544 2.846827 CTCTAACCCTCCCTGTTTGGAT 59.153 50.000 0.00 0.00 38.35 3.41
465 545 2.266279 CTCTAACCCTCCCTGTTTGGA 58.734 52.381 0.00 0.00 38.35 3.53
466 546 1.985895 ACTCTAACCCTCCCTGTTTGG 59.014 52.381 0.00 0.00 0.00 3.28
467 547 2.290323 CCACTCTAACCCTCCCTGTTTG 60.290 54.545 0.00 0.00 0.00 2.93
468 548 1.985895 CCACTCTAACCCTCCCTGTTT 59.014 52.381 0.00 0.00 0.00 2.83
469 549 1.657804 CCACTCTAACCCTCCCTGTT 58.342 55.000 0.00 0.00 0.00 3.16
470 550 0.252742 CCCACTCTAACCCTCCCTGT 60.253 60.000 0.00 0.00 0.00 4.00
471 551 0.252742 ACCCACTCTAACCCTCCCTG 60.253 60.000 0.00 0.00 0.00 4.45
472 552 0.496841 AACCCACTCTAACCCTCCCT 59.503 55.000 0.00 0.00 0.00 4.20
473 553 2.117051 CTAACCCACTCTAACCCTCCC 58.883 57.143 0.00 0.00 0.00 4.30
474 554 2.830293 ACTAACCCACTCTAACCCTCC 58.170 52.381 0.00 0.00 0.00 4.30
475 555 4.095211 AGAACTAACCCACTCTAACCCTC 58.905 47.826 0.00 0.00 0.00 4.30
476 556 4.143406 AGAACTAACCCACTCTAACCCT 57.857 45.455 0.00 0.00 0.00 4.34
477 557 5.898397 AGATAGAACTAACCCACTCTAACCC 59.102 44.000 0.00 0.00 0.00 4.11
478 558 8.412456 GTTAGATAGAACTAACCCACTCTAACC 58.588 40.741 13.82 4.06 43.43 2.85
489 569 8.366401 GGGATAGTTGGGTTAGATAGAACTAAC 58.634 40.741 0.00 0.00 46.41 2.34
490 570 7.232127 CGGGATAGTTGGGTTAGATAGAACTAA 59.768 40.741 0.00 0.00 33.90 2.24
491 571 6.718454 CGGGATAGTTGGGTTAGATAGAACTA 59.282 42.308 0.00 0.00 34.51 2.24
492 572 5.539193 CGGGATAGTTGGGTTAGATAGAACT 59.461 44.000 0.00 0.00 0.00 3.01
493 573 5.537674 TCGGGATAGTTGGGTTAGATAGAAC 59.462 44.000 0.00 0.00 0.00 3.01
494 574 5.708544 TCGGGATAGTTGGGTTAGATAGAA 58.291 41.667 0.00 0.00 0.00 2.10
495 575 5.329191 TCGGGATAGTTGGGTTAGATAGA 57.671 43.478 0.00 0.00 0.00 1.98
496 576 5.105310 CCATCGGGATAGTTGGGTTAGATAG 60.105 48.000 0.00 0.00 35.59 2.08
497 577 4.775780 CCATCGGGATAGTTGGGTTAGATA 59.224 45.833 0.00 0.00 35.59 1.98
498 578 3.583086 CCATCGGGATAGTTGGGTTAGAT 59.417 47.826 0.00 0.00 35.59 1.98
499 579 2.969950 CCATCGGGATAGTTGGGTTAGA 59.030 50.000 0.00 0.00 35.59 2.10
500 580 2.969950 TCCATCGGGATAGTTGGGTTAG 59.030 50.000 0.00 0.00 38.64 2.34
501 581 2.969950 CTCCATCGGGATAGTTGGGTTA 59.030 50.000 0.00 0.00 43.91 2.85
502 582 1.768870 CTCCATCGGGATAGTTGGGTT 59.231 52.381 0.00 0.00 43.91 4.11
503 583 1.062428 TCTCCATCGGGATAGTTGGGT 60.062 52.381 0.00 0.00 43.91 4.51
504 584 1.620819 CTCTCCATCGGGATAGTTGGG 59.379 57.143 0.00 0.00 43.91 4.12
505 585 1.620819 CCTCTCCATCGGGATAGTTGG 59.379 57.143 0.00 0.00 43.91 3.77
506 586 2.036475 CACCTCTCCATCGGGATAGTTG 59.964 54.545 0.00 0.00 43.91 3.16
507 587 2.320781 CACCTCTCCATCGGGATAGTT 58.679 52.381 0.00 0.00 43.91 2.24
508 588 2.002505 CACCTCTCCATCGGGATAGT 57.997 55.000 0.00 0.00 43.91 2.12
509 589 0.605589 GCACCTCTCCATCGGGATAG 59.394 60.000 0.00 0.00 43.91 2.08
510 590 0.188587 AGCACCTCTCCATCGGGATA 59.811 55.000 0.00 0.00 43.91 2.59
511 591 0.692419 AAGCACCTCTCCATCGGGAT 60.692 55.000 0.00 0.00 43.91 3.85
512 592 0.032515 TAAGCACCTCTCCATCGGGA 60.033 55.000 0.00 0.00 42.29 5.14
513 593 1.051812 ATAAGCACCTCTCCATCGGG 58.948 55.000 0.00 0.00 0.00 5.14
514 594 2.874701 CAAATAAGCACCTCTCCATCGG 59.125 50.000 0.00 0.00 0.00 4.18
515 595 2.874701 CCAAATAAGCACCTCTCCATCG 59.125 50.000 0.00 0.00 0.00 3.84
516 596 3.217626 CCCAAATAAGCACCTCTCCATC 58.782 50.000 0.00 0.00 0.00 3.51
517 597 2.582636 ACCCAAATAAGCACCTCTCCAT 59.417 45.455 0.00 0.00 0.00 3.41
518 598 1.992557 ACCCAAATAAGCACCTCTCCA 59.007 47.619 0.00 0.00 0.00 3.86
519 599 2.808906 ACCCAAATAAGCACCTCTCC 57.191 50.000 0.00 0.00 0.00 3.71
520 600 5.099042 TCTAACCCAAATAAGCACCTCTC 57.901 43.478 0.00 0.00 0.00 3.20
521 601 4.536489 ACTCTAACCCAAATAAGCACCTCT 59.464 41.667 0.00 0.00 0.00 3.69
522 602 4.636206 CACTCTAACCCAAATAAGCACCTC 59.364 45.833 0.00 0.00 0.00 3.85
523 603 4.567747 CCACTCTAACCCAAATAAGCACCT 60.568 45.833 0.00 0.00 0.00 4.00
524 604 3.694566 CCACTCTAACCCAAATAAGCACC 59.305 47.826 0.00 0.00 0.00 5.01
525 605 3.694566 CCCACTCTAACCCAAATAAGCAC 59.305 47.826 0.00 0.00 0.00 4.40
526 606 3.332485 ACCCACTCTAACCCAAATAAGCA 59.668 43.478 0.00 0.00 0.00 3.91
527 607 3.964411 ACCCACTCTAACCCAAATAAGC 58.036 45.455 0.00 0.00 0.00 3.09
528 608 6.954232 TCTAACCCACTCTAACCCAAATAAG 58.046 40.000 0.00 0.00 0.00 1.73
529 609 6.956102 TCTAACCCACTCTAACCCAAATAA 57.044 37.500 0.00 0.00 0.00 1.40
530 610 6.956102 TTCTAACCCACTCTAACCCAAATA 57.044 37.500 0.00 0.00 0.00 1.40
531 611 5.853572 TTCTAACCCACTCTAACCCAAAT 57.146 39.130 0.00 0.00 0.00 2.32
532 612 5.649970 TTTCTAACCCACTCTAACCCAAA 57.350 39.130 0.00 0.00 0.00 3.28
533 613 5.649970 TTTTCTAACCCACTCTAACCCAA 57.350 39.130 0.00 0.00 0.00 4.12
534 614 5.853572 ATTTTCTAACCCACTCTAACCCA 57.146 39.130 0.00 0.00 0.00 4.51
535 615 7.400439 AGTTATTTTCTAACCCACTCTAACCC 58.600 38.462 0.00 0.00 0.00 4.11
536 616 8.319881 AGAGTTATTTTCTAACCCACTCTAACC 58.680 37.037 0.00 0.00 38.16 2.85
566 646 8.185506 TGTTTGGATACTCTAACACAGTTAGA 57.814 34.615 16.22 16.22 31.46 2.10
567 647 7.545965 CCTGTTTGGATACTCTAACACAGTTAG 59.454 40.741 9.97 9.97 38.35 2.34
568 648 7.383687 CCTGTTTGGATACTCTAACACAGTTA 58.616 38.462 0.00 0.00 38.35 2.24
569 649 6.231211 CCTGTTTGGATACTCTAACACAGTT 58.769 40.000 0.00 0.00 38.35 3.16
570 650 5.280011 CCCTGTTTGGATACTCTAACACAGT 60.280 44.000 0.00 0.00 38.35 3.55
571 651 5.178797 CCCTGTTTGGATACTCTAACACAG 58.821 45.833 0.00 0.00 38.35 3.66
572 652 4.564821 GCCCTGTTTGGATACTCTAACACA 60.565 45.833 0.00 0.00 38.35 3.72
573 653 3.939592 GCCCTGTTTGGATACTCTAACAC 59.060 47.826 0.00 0.00 38.35 3.32
574 654 3.054655 GGCCCTGTTTGGATACTCTAACA 60.055 47.826 0.00 0.00 38.35 2.41
575 655 3.054655 TGGCCCTGTTTGGATACTCTAAC 60.055 47.826 0.00 0.00 38.35 2.34
576 656 3.186283 TGGCCCTGTTTGGATACTCTAA 58.814 45.455 0.00 0.00 38.35 2.10
577 657 2.840511 TGGCCCTGTTTGGATACTCTA 58.159 47.619 0.00 0.00 38.35 2.43
578 658 1.668826 TGGCCCTGTTTGGATACTCT 58.331 50.000 0.00 0.00 38.35 3.24
579 659 2.369394 CTTGGCCCTGTTTGGATACTC 58.631 52.381 0.00 0.00 38.35 2.59
580 660 1.005924 CCTTGGCCCTGTTTGGATACT 59.994 52.381 0.00 0.00 38.35 2.12
581 661 1.272480 ACCTTGGCCCTGTTTGGATAC 60.272 52.381 0.00 0.00 38.35 2.24
582 662 1.005450 GACCTTGGCCCTGTTTGGATA 59.995 52.381 0.00 0.00 38.35 2.59
583 663 0.251787 GACCTTGGCCCTGTTTGGAT 60.252 55.000 0.00 0.00 38.35 3.41
584 664 1.152830 GACCTTGGCCCTGTTTGGA 59.847 57.895 0.00 0.00 38.35 3.53
585 665 0.404040 TAGACCTTGGCCCTGTTTGG 59.596 55.000 0.00 0.00 0.00 3.28
586 666 2.514458 ATAGACCTTGGCCCTGTTTG 57.486 50.000 0.00 0.00 0.00 2.93
587 667 3.138468 GGATATAGACCTTGGCCCTGTTT 59.862 47.826 0.00 0.00 0.00 2.83
588 668 2.711547 GGATATAGACCTTGGCCCTGTT 59.288 50.000 0.00 0.00 0.00 3.16
589 669 2.339769 GGATATAGACCTTGGCCCTGT 58.660 52.381 0.00 0.00 0.00 4.00
590 670 2.039084 GTGGATATAGACCTTGGCCCTG 59.961 54.545 0.00 0.00 0.00 4.45
591 671 2.089925 AGTGGATATAGACCTTGGCCCT 60.090 50.000 0.00 0.00 0.00 5.19
592 672 2.039084 CAGTGGATATAGACCTTGGCCC 59.961 54.545 0.00 0.00 0.00 5.80
593 673 2.706190 ACAGTGGATATAGACCTTGGCC 59.294 50.000 0.00 0.00 0.00 5.36
594 674 4.589374 ACTACAGTGGATATAGACCTTGGC 59.411 45.833 0.00 0.00 0.00 4.52
595 675 6.072618 CGTACTACAGTGGATATAGACCTTGG 60.073 46.154 0.00 0.00 0.00 3.61
596 676 6.709397 TCGTACTACAGTGGATATAGACCTTG 59.291 42.308 0.00 0.00 0.00 3.61
597 677 6.835174 TCGTACTACAGTGGATATAGACCTT 58.165 40.000 0.00 0.00 0.00 3.50
598 678 6.430962 TCGTACTACAGTGGATATAGACCT 57.569 41.667 0.00 0.00 0.00 3.85
599 679 6.403418 GCATCGTACTACAGTGGATATAGACC 60.403 46.154 0.00 0.00 0.00 3.85
600 680 6.148976 TGCATCGTACTACAGTGGATATAGAC 59.851 42.308 0.00 0.00 0.00 2.59
601 681 6.235664 TGCATCGTACTACAGTGGATATAGA 58.764 40.000 0.00 0.00 0.00 1.98
615 695 8.936070 TTATACTGTACATTTTGCATCGTACT 57.064 30.769 0.00 2.03 36.14 2.73
623 703 7.794349 GCTCGAGAATTATACTGTACATTTTGC 59.206 37.037 18.75 0.00 0.00 3.68
672 752 2.345244 CGGAGCAGACTGTTGCCT 59.655 61.111 3.99 0.00 45.18 4.75
688 769 0.817634 TTTCACTGTTCCAGGGCACG 60.818 55.000 0.00 0.00 34.42 5.34
752 836 3.243401 CCCTTCTTTTTCTGTTCCAACGG 60.243 47.826 0.00 0.00 36.62 4.44
754 838 3.958147 TCCCCTTCTTTTTCTGTTCCAAC 59.042 43.478 0.00 0.00 0.00 3.77
796 880 0.748450 ACCGGTTGACGTCTCTGAAA 59.252 50.000 17.92 0.00 42.24 2.69
819 903 5.125417 TGTGTGGGAAAAGAGAAGAAACAAG 59.875 40.000 0.00 0.00 0.00 3.16
851 935 1.838073 AATATAAGGGCGGGCGAGGG 61.838 60.000 0.00 0.00 0.00 4.30
863 947 4.683832 CCCGGCGAGGAAGATAATATAAG 58.316 47.826 9.30 0.00 45.00 1.73
864 948 3.118884 GCCCGGCGAGGAAGATAATATAA 60.119 47.826 9.30 0.00 45.00 0.98
989 1091 1.113517 GGCCTCCATAGACGCACCTA 61.114 60.000 0.00 0.00 0.00 3.08
991 1093 2.109181 GGCCTCCATAGACGCACC 59.891 66.667 0.00 0.00 0.00 5.01
992 1094 1.068250 GAGGCCTCCATAGACGCAC 59.932 63.158 23.19 0.00 0.00 5.34
993 1095 2.490148 CGAGGCCTCCATAGACGCA 61.490 63.158 27.20 0.00 0.00 5.24
1095 1197 2.035442 GTTGAAGGAGCACCCGAGC 61.035 63.158 0.00 0.00 40.87 5.03
1123 1225 0.179045 GGGTCCATGTCGATGAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
1194 1296 2.279120 GCAGCCTCCTCGTCATCG 60.279 66.667 0.00 0.00 38.55 3.84
1305 1407 1.394618 AGGAGTAGGACACGATGCTC 58.605 55.000 0.00 0.00 0.00 4.26
1306 1408 2.299521 GTAGGAGTAGGACACGATGCT 58.700 52.381 0.00 0.00 0.00 3.79
1309 1411 2.025605 TGGTGTAGGAGTAGGACACGAT 60.026 50.000 0.00 0.00 43.56 3.73
1319 1421 1.288127 GACGCGTTGGTGTAGGAGT 59.712 57.895 15.53 0.00 36.92 3.85
1320 1422 1.800315 CGACGCGTTGGTGTAGGAG 60.800 63.158 19.10 0.00 36.92 3.69
1321 1423 2.256158 CGACGCGTTGGTGTAGGA 59.744 61.111 19.10 0.00 36.92 2.94
1322 1424 2.049802 ACGACGCGTTGGTGTAGG 60.050 61.111 29.09 7.12 36.35 3.18
1323 1425 2.423031 CGACGACGCGTTGGTGTAG 61.423 63.158 29.09 14.37 41.37 2.74
1324 1426 2.427245 CGACGACGCGTTGGTGTA 60.427 61.111 29.09 0.00 41.37 2.90
1334 1436 1.154093 TAGAAAGCAGGCGACGACG 60.154 57.895 2.12 2.12 42.93 5.12
1344 1446 1.446099 CTGCGCGGAGTAGAAAGCA 60.446 57.895 20.53 0.00 34.21 3.91
1589 1691 2.675423 AGTACTCCGTGGCGCTCA 60.675 61.111 7.64 0.00 0.00 4.26
1699 1801 5.790593 TGTACACTAGAAGCCGATCTTTTT 58.209 37.500 0.00 0.00 34.56 1.94
1700 1802 5.401531 TGTACACTAGAAGCCGATCTTTT 57.598 39.130 0.00 0.00 34.56 2.27
1702 1804 4.038162 GGATGTACACTAGAAGCCGATCTT 59.962 45.833 0.00 0.00 37.83 2.40
1707 1852 6.556212 CATATAGGATGTACACTAGAAGCCG 58.444 44.000 0.00 0.00 0.00 5.52
1709 1854 6.925211 TGCATATAGGATGTACACTAGAAGC 58.075 40.000 0.00 3.18 0.00 3.86
1714 1859 7.726216 GCCATATGCATATAGGATGTACACTA 58.274 38.462 26.37 0.00 40.77 2.74
1715 1860 6.586344 GCCATATGCATATAGGATGTACACT 58.414 40.000 26.37 0.00 40.77 3.55
1770 1915 4.910195 TGGAGCACACTTCATCATACTTT 58.090 39.130 0.00 0.00 0.00 2.66
1774 1919 3.264193 ACCTTGGAGCACACTTCATCATA 59.736 43.478 0.00 0.00 29.02 2.15
1776 1921 1.421268 ACCTTGGAGCACACTTCATCA 59.579 47.619 0.00 0.00 29.02 3.07
1778 1923 1.546323 CCACCTTGGAGCACACTTCAT 60.546 52.381 0.00 0.00 40.96 2.57
1779 1924 0.179020 CCACCTTGGAGCACACTTCA 60.179 55.000 0.00 0.00 40.96 3.02
1780 1925 0.179018 ACCACCTTGGAGCACACTTC 60.179 55.000 0.00 0.00 40.96 3.01
1781 1926 0.258774 AACCACCTTGGAGCACACTT 59.741 50.000 0.00 0.00 40.96 3.16
1828 1974 4.241590 TCATCACAAGGTTAACGTACGT 57.758 40.909 16.72 16.72 0.00 3.57
1829 1975 4.433805 GCTTCATCACAAGGTTAACGTACG 60.434 45.833 15.01 15.01 0.00 3.67
1830 1976 4.689345 AGCTTCATCACAAGGTTAACGTAC 59.311 41.667 0.43 0.00 29.58 3.67
1831 1977 4.890088 AGCTTCATCACAAGGTTAACGTA 58.110 39.130 0.43 0.00 29.58 3.57
1857 2003 1.956170 GGGCACAGTGACAGTGACG 60.956 63.158 17.24 8.43 46.04 4.35
1876 2022 2.431057 ACCGAATCTCGTCCTTAGCAAT 59.569 45.455 0.00 0.00 38.40 3.56
1938 2094 6.684686 CACATAATCATGGCAATTAGAAGGG 58.315 40.000 0.00 0.00 36.39 3.95
1977 2133 4.641541 GCCCTGATGCATGCATACATATTA 59.358 41.667 32.27 7.09 36.70 0.98
1978 2134 3.446161 GCCCTGATGCATGCATACATATT 59.554 43.478 32.27 10.58 36.70 1.28
1979 2135 3.021695 GCCCTGATGCATGCATACATAT 58.978 45.455 32.27 11.41 36.70 1.78
1980 2136 2.224818 TGCCCTGATGCATGCATACATA 60.225 45.455 32.27 17.48 36.04 2.29
1981 2137 1.254026 GCCCTGATGCATGCATACAT 58.746 50.000 32.27 12.33 36.70 2.29
1982 2138 0.106619 TGCCCTGATGCATGCATACA 60.107 50.000 32.27 26.52 36.04 2.29
1983 2139 0.596577 CTGCCCTGATGCATGCATAC 59.403 55.000 32.27 23.80 41.16 2.39
1984 2140 0.475044 TCTGCCCTGATGCATGCATA 59.525 50.000 32.27 18.77 41.16 3.14
1999 2155 2.821366 CGCATGGGGTCTGTCTGC 60.821 66.667 0.89 0.00 0.00 4.26
2042 2198 8.175069 GCTCAAACGAATCACAATAATCAAGTA 58.825 33.333 0.00 0.00 0.00 2.24
2043 2199 7.023575 GCTCAAACGAATCACAATAATCAAGT 58.976 34.615 0.00 0.00 0.00 3.16
2044 2200 7.022979 TGCTCAAACGAATCACAATAATCAAG 58.977 34.615 0.00 0.00 0.00 3.02
2094 2255 6.205853 TGGTTTGAATGAGTTTAGTAATGCGT 59.794 34.615 0.00 0.00 0.00 5.24
2101 2262 5.133221 ACAGCTGGTTTGAATGAGTTTAGT 58.867 37.500 19.93 0.00 0.00 2.24
2102 2263 5.695851 ACAGCTGGTTTGAATGAGTTTAG 57.304 39.130 19.93 0.00 0.00 1.85
2103 2264 5.705441 CCTACAGCTGGTTTGAATGAGTTTA 59.295 40.000 19.93 0.00 0.00 2.01
2119 2280 6.171369 GATCGATATCAGCAGCCTACAGCT 62.171 50.000 0.00 0.00 41.68 4.24
2120 2281 1.270826 TCGATATCAGCAGCCTACAGC 59.729 52.381 3.12 0.00 44.25 4.40
2121 2282 3.192212 TGATCGATATCAGCAGCCTACAG 59.808 47.826 0.00 0.00 37.20 2.74
2122 2283 3.157087 TGATCGATATCAGCAGCCTACA 58.843 45.455 0.00 0.00 37.20 2.74
2123 2284 3.857549 TGATCGATATCAGCAGCCTAC 57.142 47.619 0.00 0.00 37.20 3.18
2205 2494 4.639310 TGACTGGACGACCTAGAAGATAAC 59.361 45.833 5.33 0.00 37.04 1.89
2246 2535 1.077169 TCTTACTCCTGGCTGACTGGA 59.923 52.381 8.97 8.97 44.02 3.86
2247 2536 1.480137 CTCTTACTCCTGGCTGACTGG 59.520 57.143 0.00 0.00 39.40 4.00
2248 2537 2.165437 GTCTCTTACTCCTGGCTGACTG 59.835 54.545 0.00 0.00 0.00 3.51
2249 2538 2.225142 TGTCTCTTACTCCTGGCTGACT 60.225 50.000 0.00 0.00 0.00 3.41
2250 2539 2.171840 TGTCTCTTACTCCTGGCTGAC 58.828 52.381 0.00 0.00 0.00 3.51
2251 2540 2.604912 TGTCTCTTACTCCTGGCTGA 57.395 50.000 0.00 0.00 0.00 4.26
2252 2541 2.499289 ACATGTCTCTTACTCCTGGCTG 59.501 50.000 0.00 0.00 0.00 4.85
2253 2542 2.826488 ACATGTCTCTTACTCCTGGCT 58.174 47.619 0.00 0.00 0.00 4.75
2254 2543 3.954904 TCTACATGTCTCTTACTCCTGGC 59.045 47.826 0.00 0.00 0.00 4.85
2255 2544 4.339814 GGTCTACATGTCTCTTACTCCTGG 59.660 50.000 0.00 0.00 0.00 4.45
2256 2545 4.035792 CGGTCTACATGTCTCTTACTCCTG 59.964 50.000 0.00 0.00 0.00 3.86
2257 2546 4.200874 CGGTCTACATGTCTCTTACTCCT 58.799 47.826 0.00 0.00 0.00 3.69
2258 2547 3.946558 ACGGTCTACATGTCTCTTACTCC 59.053 47.826 0.00 0.00 0.00 3.85
2259 2548 5.448904 GGAACGGTCTACATGTCTCTTACTC 60.449 48.000 0.00 0.00 0.00 2.59
2260 2549 4.398673 GGAACGGTCTACATGTCTCTTACT 59.601 45.833 0.00 0.00 0.00 2.24
2261 2550 4.157289 TGGAACGGTCTACATGTCTCTTAC 59.843 45.833 0.00 0.00 0.00 2.34
2262 2551 4.338012 TGGAACGGTCTACATGTCTCTTA 58.662 43.478 0.00 0.00 0.00 2.10
2263 2552 3.162666 TGGAACGGTCTACATGTCTCTT 58.837 45.455 0.00 0.00 0.00 2.85
2304 2593 6.765036 GTCATTTGGAAGATTGCAGAGATAGA 59.235 38.462 0.00 0.00 0.00 1.98
2305 2594 6.541278 TGTCATTTGGAAGATTGCAGAGATAG 59.459 38.462 0.00 0.00 0.00 2.08
2306 2595 6.417258 TGTCATTTGGAAGATTGCAGAGATA 58.583 36.000 0.00 0.00 0.00 1.98
2307 2596 5.258841 TGTCATTTGGAAGATTGCAGAGAT 58.741 37.500 0.00 0.00 0.00 2.75
2308 2597 4.654915 TGTCATTTGGAAGATTGCAGAGA 58.345 39.130 0.00 0.00 0.00 3.10
2309 2598 4.458295 ACTGTCATTTGGAAGATTGCAGAG 59.542 41.667 0.00 0.00 0.00 3.35
2310 2599 4.401022 ACTGTCATTTGGAAGATTGCAGA 58.599 39.130 0.00 0.00 0.00 4.26
2311 2600 4.778534 ACTGTCATTTGGAAGATTGCAG 57.221 40.909 0.00 0.00 0.00 4.41
2312 2601 5.559770 TCTACTGTCATTTGGAAGATTGCA 58.440 37.500 0.00 0.00 0.00 4.08
2313 2602 6.690194 ATCTACTGTCATTTGGAAGATTGC 57.310 37.500 0.00 0.00 0.00 3.56
2314 2603 7.517417 GCGTATCTACTGTCATTTGGAAGATTG 60.517 40.741 0.00 0.00 0.00 2.67
2315 2604 6.480320 GCGTATCTACTGTCATTTGGAAGATT 59.520 38.462 0.00 0.00 0.00 2.40
2316 2605 5.986135 GCGTATCTACTGTCATTTGGAAGAT 59.014 40.000 0.00 0.00 0.00 2.40
2372 2666 1.066257 CCGCCTAATTGCATGCCAC 59.934 57.895 16.68 0.00 0.00 5.01
2397 2764 2.635915 TCGGGTATCCTCTCTCTCTCTC 59.364 54.545 0.00 0.00 0.00 3.20
2398 2765 2.370849 GTCGGGTATCCTCTCTCTCTCT 59.629 54.545 0.00 0.00 0.00 3.10
2414 2801 1.740296 GTGAACGGTCCATGTCGGG 60.740 63.158 0.00 0.00 34.36 5.14
2473 2865 2.270352 TCCGATCACATTATTGGCCC 57.730 50.000 0.00 0.00 31.24 5.80
2631 3048 3.782244 GAGGCGACGTTGCTGCTG 61.782 66.667 26.31 0.00 34.52 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.