Multiple sequence alignment - TraesCS1A01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G183300 chr1A 100.000 2606 0 0 947 3552 332382580 332385185 0.000000e+00 4813.0
1 TraesCS1A01G183300 chr1A 100.000 644 0 0 1 644 332381634 332382277 0.000000e+00 1190.0
2 TraesCS1A01G183300 chr1B 90.909 2145 127 31 947 3053 343349437 343347323 0.000000e+00 2819.0
3 TraesCS1A01G183300 chr1B 89.157 498 23 12 167 641 343349966 343349477 3.050000e-165 592.0
4 TraesCS1A01G183300 chr1B 85.209 311 23 8 3243 3552 676269616 676269328 7.450000e-77 298.0
5 TraesCS1A01G183300 chr1D 92.924 1286 49 16 1995 3246 269819763 269818486 0.000000e+00 1832.0
6 TraesCS1A01G183300 chr1D 92.564 1022 47 10 947 1939 269821057 269820036 0.000000e+00 1439.0
7 TraesCS1A01G183300 chr1D 93.176 381 12 3 269 644 269821448 269821077 6.700000e-152 547.0
8 TraesCS1A01G183300 chr1D 88.235 68 6 2 72 138 269821601 269821535 2.940000e-11 80.5
9 TraesCS1A01G183300 chr6D 92.744 317 20 2 3236 3552 71997984 71997671 4.180000e-124 455.0
10 TraesCS1A01G183300 chr6D 92.509 267 18 2 3287 3552 145005145 145005410 7.200000e-102 381.0
11 TraesCS1A01G183300 chr2D 92.233 309 22 2 3245 3552 293782009 293781702 1.510000e-118 436.0
12 TraesCS1A01G183300 chr2D 92.793 222 16 0 3245 3466 461577241 461577020 4.420000e-84 322.0
13 TraesCS1A01G183300 chr2D 94.030 201 7 4 2711 2910 424587193 424586997 2.070000e-77 300.0
14 TraesCS1A01G183300 chr2D 94.048 84 4 1 3469 3552 461559669 461559587 3.720000e-25 126.0
15 TraesCS1A01G183300 chr7D 91.262 309 25 2 3245 3552 593204116 593203809 1.520000e-113 420.0
16 TraesCS1A01G183300 chr7D 97.561 41 1 0 3245 3285 637570214 637570174 1.770000e-08 71.3
17 TraesCS1A01G183300 chr3B 83.478 230 35 2 3246 3475 126926452 126926678 9.990000e-51 211.0
18 TraesCS1A01G183300 chr4A 81.897 232 41 1 3245 3476 113600387 113600617 1.010000e-45 195.0
19 TraesCS1A01G183300 chr5B 82.114 123 15 7 3432 3551 358277736 358277618 8.120000e-17 99.0
20 TraesCS1A01G183300 chr2A 77.246 167 35 3 3386 3552 644218982 644219145 1.050000e-15 95.3
21 TraesCS1A01G183300 chr2A 94.118 51 3 0 3245 3295 421910643 421910593 1.060000e-10 78.7
22 TraesCS1A01G183300 chr3A 94.118 51 2 1 3245 3295 194700709 194700660 3.800000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G183300 chr1A 332381634 332385185 3551 False 3001.500 4813 100.00000 1 3552 2 chr1A.!!$F1 3551
1 TraesCS1A01G183300 chr1B 343347323 343349966 2643 True 1705.500 2819 90.03300 167 3053 2 chr1B.!!$R2 2886
2 TraesCS1A01G183300 chr1D 269818486 269821601 3115 True 974.625 1832 91.72475 72 3246 4 chr1D.!!$R1 3174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.104855 TCTGCCGTCATACCTGATGC 59.895 55.0 0.0 0.00 37.12 3.91 F
73 74 0.319900 GCCGTCATACCTGATGCGAT 60.320 55.0 0.0 0.00 37.29 4.58 F
1482 1537 0.105039 CTGGTAGGCTTCGATCCCAC 59.895 60.0 0.0 0.38 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1303 0.174845 CTCCATGCCTGCAACAATGG 59.825 55.0 12.8 12.8 0.00 3.16 R
1733 1800 1.098050 GGCTTAGGACAGCATTGTGG 58.902 55.0 0.0 0.0 42.10 4.17 R
3434 3755 0.030369 ATCGGTATTGGTCGAGACGC 59.970 55.0 0.0 0.0 38.83 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.615495 GAATGAATTTGCATGTCATCGTG 57.385 39.130 7.51 0.00 30.76 4.35
23 24 3.490800 TGAATTTGCATGTCATCGTGG 57.509 42.857 0.00 0.00 0.00 4.94
24 25 2.819019 TGAATTTGCATGTCATCGTGGT 59.181 40.909 0.00 0.00 0.00 4.16
25 26 3.255395 TGAATTTGCATGTCATCGTGGTT 59.745 39.130 0.00 0.00 0.00 3.67
26 27 3.940209 ATTTGCATGTCATCGTGGTTT 57.060 38.095 0.00 0.00 0.00 3.27
27 28 3.724508 TTTGCATGTCATCGTGGTTTT 57.275 38.095 0.00 0.00 0.00 2.43
28 29 3.724508 TTGCATGTCATCGTGGTTTTT 57.275 38.095 0.00 0.00 0.00 1.94
51 52 8.445275 TTTTCGCTGTGATTATATGGTAATGT 57.555 30.769 0.00 0.00 0.00 2.71
52 53 7.652300 TTCGCTGTGATTATATGGTAATGTC 57.348 36.000 0.00 0.00 0.00 3.06
53 54 6.993079 TCGCTGTGATTATATGGTAATGTCT 58.007 36.000 0.00 0.00 0.00 3.41
54 55 6.868339 TCGCTGTGATTATATGGTAATGTCTG 59.132 38.462 0.00 0.00 0.00 3.51
55 56 6.401474 CGCTGTGATTATATGGTAATGTCTGC 60.401 42.308 0.00 0.00 0.00 4.26
56 57 6.128172 GCTGTGATTATATGGTAATGTCTGCC 60.128 42.308 0.00 0.00 0.00 4.85
57 58 5.931724 TGTGATTATATGGTAATGTCTGCCG 59.068 40.000 0.00 0.00 30.90 5.69
58 59 5.932303 GTGATTATATGGTAATGTCTGCCGT 59.068 40.000 0.00 0.00 32.98 5.68
59 60 6.090898 GTGATTATATGGTAATGTCTGCCGTC 59.909 42.308 0.00 0.00 30.54 4.79
60 61 5.538849 TTATATGGTAATGTCTGCCGTCA 57.461 39.130 0.00 0.00 30.54 4.35
61 62 4.623932 ATATGGTAATGTCTGCCGTCAT 57.376 40.909 0.00 0.00 30.54 3.06
62 63 5.738619 ATATGGTAATGTCTGCCGTCATA 57.261 39.130 0.00 0.00 30.54 2.15
63 64 3.173668 TGGTAATGTCTGCCGTCATAC 57.826 47.619 0.00 0.00 30.90 2.39
64 65 2.159014 TGGTAATGTCTGCCGTCATACC 60.159 50.000 0.00 0.00 30.90 2.73
65 66 2.102588 GGTAATGTCTGCCGTCATACCT 59.897 50.000 0.00 0.00 0.00 3.08
66 67 2.315925 AATGTCTGCCGTCATACCTG 57.684 50.000 0.00 0.00 0.00 4.00
67 68 1.485124 ATGTCTGCCGTCATACCTGA 58.515 50.000 0.00 0.00 0.00 3.86
68 69 1.485124 TGTCTGCCGTCATACCTGAT 58.515 50.000 0.00 0.00 32.98 2.90
69 70 1.136891 TGTCTGCCGTCATACCTGATG 59.863 52.381 0.00 0.00 38.02 3.07
70 71 0.104855 TCTGCCGTCATACCTGATGC 59.895 55.000 0.00 0.00 37.12 3.91
71 72 1.217585 CTGCCGTCATACCTGATGCG 61.218 60.000 0.00 0.00 37.12 4.73
72 73 1.067416 GCCGTCATACCTGATGCGA 59.933 57.895 0.00 0.00 37.29 5.10
73 74 0.319900 GCCGTCATACCTGATGCGAT 60.320 55.000 0.00 0.00 37.29 4.58
74 75 1.422388 CCGTCATACCTGATGCGATG 58.578 55.000 0.00 0.00 37.29 3.84
75 76 1.000274 CCGTCATACCTGATGCGATGA 60.000 52.381 0.00 0.00 37.29 2.92
76 77 2.545742 CCGTCATACCTGATGCGATGAA 60.546 50.000 0.00 0.00 37.29 2.57
77 78 2.728318 CGTCATACCTGATGCGATGAAG 59.272 50.000 0.00 0.00 37.29 3.02
89 90 5.530543 TGATGCGATGAAGCCAAATGTTATA 59.469 36.000 0.00 0.00 36.02 0.98
118 119 2.899900 GAGCCCCTTTCCTTCACATTTT 59.100 45.455 0.00 0.00 0.00 1.82
119 120 3.317406 AGCCCCTTTCCTTCACATTTTT 58.683 40.909 0.00 0.00 0.00 1.94
120 121 3.071457 AGCCCCTTTCCTTCACATTTTTG 59.929 43.478 0.00 0.00 0.00 2.44
125 126 6.772233 CCCCTTTCCTTCACATTTTTGAAAAT 59.228 34.615 0.00 0.00 39.07 1.82
129 130 8.908172 TTTCCTTCACATTTTTGAAAATTTGC 57.092 26.923 9.40 0.00 36.50 3.68
138 139 7.068470 ACATTTTTGAAAATTTGCCTCCATTGT 59.932 29.630 0.00 0.00 36.52 2.71
140 141 6.374565 TTTGAAAATTTGCCTCCATTGTTG 57.625 33.333 0.00 0.00 0.00 3.33
141 142 4.387598 TGAAAATTTGCCTCCATTGTTGG 58.612 39.130 0.00 0.00 45.15 3.77
151 152 2.193306 CCATTGTTGGAGCGTATTGC 57.807 50.000 0.00 0.00 46.92 3.56
152 153 1.472082 CCATTGTTGGAGCGTATTGCA 59.528 47.619 0.00 0.00 46.92 4.08
153 154 2.099592 CCATTGTTGGAGCGTATTGCAT 59.900 45.455 0.00 0.00 46.92 3.96
154 155 3.793129 CCATTGTTGGAGCGTATTGCATC 60.793 47.826 0.00 0.00 46.92 3.91
207 216 1.339631 TGCATTAACTTGGTCTCCCCG 60.340 52.381 0.00 0.00 35.15 5.73
236 252 6.266168 AGAGAATCAGTGTGAACAGTAGAG 57.734 41.667 0.00 0.00 37.82 2.43
341 371 4.584874 TGGCGAGATCCACATAAAGAAAA 58.415 39.130 0.00 0.00 0.00 2.29
342 372 4.635765 TGGCGAGATCCACATAAAGAAAAG 59.364 41.667 0.00 0.00 0.00 2.27
343 373 4.876107 GGCGAGATCCACATAAAGAAAAGA 59.124 41.667 0.00 0.00 0.00 2.52
344 374 5.354234 GGCGAGATCCACATAAAGAAAAGAA 59.646 40.000 0.00 0.00 0.00 2.52
428 463 1.375013 CCTTTGCATGCTTGGTGGC 60.375 57.895 20.33 0.00 0.00 5.01
429 464 1.375013 CTTTGCATGCTTGGTGGCC 60.375 57.895 20.33 0.00 0.00 5.36
433 468 2.990967 CATGCTTGGTGGCCCGTT 60.991 61.111 0.00 0.00 0.00 4.44
434 469 2.676471 ATGCTTGGTGGCCCGTTC 60.676 61.111 0.00 0.00 0.00 3.95
641 681 5.010213 ACCAGTGTCTTTCAGTAACTCTCTC 59.990 44.000 0.00 0.00 0.00 3.20
643 683 6.378582 CAGTGTCTTTCAGTAACTCTCTCTC 58.621 44.000 0.00 0.00 0.00 3.20
1068 1108 1.478510 CAGCTGATCAGGTACTTCGGT 59.521 52.381 26.06 0.00 34.60 4.69
1071 1111 1.825474 CTGATCAGGTACTTCGGTGGT 59.175 52.381 15.38 0.00 34.60 4.16
1079 1119 1.660560 TACTTCGGTGGTCTAGGCGC 61.661 60.000 0.00 0.00 0.00 6.53
1199 1239 2.476241 GGCTTGCCATTTCGTTTTTCTG 59.524 45.455 6.79 0.00 0.00 3.02
1200 1240 2.096762 GCTTGCCATTTCGTTTTTCTGC 60.097 45.455 0.00 0.00 0.00 4.26
1201 1241 2.879002 TGCCATTTCGTTTTTCTGCA 57.121 40.000 0.00 0.00 0.00 4.41
1248 1303 8.084073 CCATGGTGATGTATGGTAATTGATTTC 58.916 37.037 2.57 0.00 39.18 2.17
1330 1385 1.216710 GTCCGAGGAGCAGTTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
1393 1448 5.391060 CGCAGCTATTTTAGAGTGTTACC 57.609 43.478 0.00 0.00 0.00 2.85
1399 1454 5.353400 GCTATTTTAGAGTGTTACCACCACC 59.647 44.000 0.00 0.00 42.88 4.61
1429 1484 4.634012 TTTCTTACTGGCCTCTTGCTTA 57.366 40.909 3.32 0.00 40.92 3.09
1440 1495 3.678529 GCCTCTTGCTTACCTCTTCAGAG 60.679 52.174 0.00 0.00 38.27 3.35
1482 1537 0.105039 CTGGTAGGCTTCGATCCCAC 59.895 60.000 0.00 0.38 0.00 4.61
1490 1545 1.475034 GCTTCGATCCCACCTGCATTA 60.475 52.381 0.00 0.00 0.00 1.90
1507 1562 4.202253 TGCATTATCGAGGATACAAGCACT 60.202 41.667 0.00 0.00 41.41 4.40
1531 1586 2.157738 GCTGATGCTTCTTTCCTGTGT 58.842 47.619 0.88 0.00 36.03 3.72
1552 1607 6.128391 TGTGTAAGAATTCGAATGCAGGTTAC 60.128 38.462 18.45 16.51 0.00 2.50
1595 1658 2.483714 GGTTCACACTCTTCAGACAGCA 60.484 50.000 0.00 0.00 0.00 4.41
1602 1665 3.247173 CACTCTTCAGACAGCAGTTTGTC 59.753 47.826 0.00 0.00 46.14 3.18
1612 1675 2.031682 CAGCAGTTTGTCAGTACTTGGC 60.032 50.000 0.00 0.00 0.00 4.52
1621 1684 4.633175 TGTCAGTACTTGGCGTTTCATTA 58.367 39.130 0.00 0.00 32.72 1.90
1623 1686 5.703592 TGTCAGTACTTGGCGTTTCATTAAT 59.296 36.000 0.00 0.00 32.72 1.40
1632 1695 4.111916 GGCGTTTCATTAATTCCATGGTG 58.888 43.478 12.58 1.02 0.00 4.17
1633 1696 4.111916 GCGTTTCATTAATTCCATGGTGG 58.888 43.478 12.58 0.00 39.43 4.61
1733 1800 1.037579 GGCCCACCCAAGATTAGCAC 61.038 60.000 0.00 0.00 0.00 4.40
1738 1805 2.513753 CACCCAAGATTAGCACCACAA 58.486 47.619 0.00 0.00 0.00 3.33
1922 1991 2.352960 GCTCATCGCCTCTTAAAACTGG 59.647 50.000 0.00 0.00 0.00 4.00
1943 2012 1.002069 ATCTCATCAAACTGGGCCCA 58.998 50.000 26.67 26.67 0.00 5.36
2003 2289 1.487976 TCTGCAGGGGTTGATGATCTC 59.512 52.381 15.13 0.00 0.00 2.75
2089 2375 2.584418 CCTCAGCTCGCCATCGTG 60.584 66.667 0.00 0.00 36.96 4.35
2167 2453 1.719780 CTCGGCGACACAAGAAAGTAC 59.280 52.381 4.99 0.00 0.00 2.73
2178 2472 4.210537 CACAAGAAAGTACGTACAACCCAG 59.789 45.833 26.55 14.35 0.00 4.45
2185 2479 2.450609 ACGTACAACCCAGCTTACTG 57.549 50.000 0.00 0.00 44.05 2.74
2203 2497 6.313164 GCTTACTGACCTGTCCATTTAGTAAC 59.687 42.308 0.00 0.00 0.00 2.50
2261 2556 1.077930 GCAGCAGAGCAGGATGGAA 60.078 57.895 0.00 0.00 35.86 3.53
2566 2861 3.728076 GGATAAGCATCCGACTGTGTA 57.272 47.619 0.00 0.00 41.50 2.90
2669 2966 6.706270 ACTAATGACCAATGATCAATCGTACC 59.294 38.462 0.00 0.00 0.00 3.34
2687 2984 1.472082 ACCGCGAAATGAAATGCATGA 59.528 42.857 8.23 0.00 37.28 3.07
2709 3008 2.223688 CGAGGCTGTATGAACTGAGAGG 60.224 54.545 0.00 0.00 0.00 3.69
2768 3067 5.819825 AAGGACGAGGAATTTGAAATAGC 57.180 39.130 0.00 0.00 0.00 2.97
2841 3140 2.575532 GGGCTTGATGAATTGATCGGA 58.424 47.619 0.30 0.00 0.00 4.55
2981 3281 3.096852 TCGCTTTCTCTGGATTAGGTGA 58.903 45.455 0.00 0.00 0.00 4.02
3004 3304 3.204827 CGCCAGATTTGAGCCCCG 61.205 66.667 0.00 0.00 0.00 5.73
3136 3457 4.280436 TGCGTGTTAATATAGGGATGGG 57.720 45.455 0.00 0.00 0.00 4.00
3195 3516 7.972832 TTCGGTTGTTACAGACTTAATGAAT 57.027 32.000 0.00 0.00 0.00 2.57
3269 3590 4.398549 TTTCAAGAATACGTCAAAGGCG 57.601 40.909 0.00 0.00 0.00 5.52
3270 3591 3.034721 TCAAGAATACGTCAAAGGCGT 57.965 42.857 1.34 1.34 45.11 5.68
3271 3592 4.177165 TCAAGAATACGTCAAAGGCGTA 57.823 40.909 6.32 6.32 46.63 4.42
3272 3593 3.922240 TCAAGAATACGTCAAAGGCGTAC 59.078 43.478 5.98 0.00 45.64 3.67
3273 3594 2.884827 AGAATACGTCAAAGGCGTACC 58.115 47.619 5.98 2.20 45.64 3.34
3274 3595 2.231964 AGAATACGTCAAAGGCGTACCA 59.768 45.455 5.98 0.00 45.64 3.25
3275 3596 2.973694 ATACGTCAAAGGCGTACCAT 57.026 45.000 5.98 0.00 45.64 3.55
3276 3597 4.098349 AGAATACGTCAAAGGCGTACCATA 59.902 41.667 5.98 0.00 45.64 2.74
3277 3598 2.973694 ACGTCAAAGGCGTACCATAT 57.026 45.000 0.00 0.00 41.06 1.78
3278 3599 3.255969 ACGTCAAAGGCGTACCATATT 57.744 42.857 0.00 0.00 41.06 1.28
3279 3600 3.602483 ACGTCAAAGGCGTACCATATTT 58.398 40.909 0.00 0.00 41.06 1.40
3280 3601 4.004982 ACGTCAAAGGCGTACCATATTTT 58.995 39.130 0.00 0.00 41.06 1.82
3281 3602 4.456566 ACGTCAAAGGCGTACCATATTTTT 59.543 37.500 0.00 0.00 41.06 1.94
3282 3603 5.642919 ACGTCAAAGGCGTACCATATTTTTA 59.357 36.000 0.00 0.00 41.06 1.52
3283 3604 6.316890 ACGTCAAAGGCGTACCATATTTTTAT 59.683 34.615 0.00 0.00 41.06 1.40
3284 3605 7.495279 ACGTCAAAGGCGTACCATATTTTTATA 59.505 33.333 0.00 0.00 41.06 0.98
3285 3606 8.336806 CGTCAAAGGCGTACCATATTTTTATAA 58.663 33.333 0.00 0.00 39.06 0.98
3291 3612 9.398538 AGGCGTACCATATTTTTATAAAAGACA 57.601 29.630 10.40 0.00 39.06 3.41
3292 3613 9.659830 GGCGTACCATATTTTTATAAAAGACAG 57.340 33.333 10.40 3.88 35.26 3.51
3310 3631 6.734104 AGACAGAAGACAATTACATGAAGC 57.266 37.500 0.00 0.00 0.00 3.86
3311 3632 6.471146 AGACAGAAGACAATTACATGAAGCT 58.529 36.000 0.00 0.00 0.00 3.74
3312 3633 7.615403 AGACAGAAGACAATTACATGAAGCTA 58.385 34.615 0.00 0.00 0.00 3.32
3313 3634 7.547370 AGACAGAAGACAATTACATGAAGCTAC 59.453 37.037 0.00 0.00 0.00 3.58
3314 3635 7.161404 ACAGAAGACAATTACATGAAGCTACA 58.839 34.615 0.00 0.00 0.00 2.74
3315 3636 7.661437 ACAGAAGACAATTACATGAAGCTACAA 59.339 33.333 0.00 0.00 0.00 2.41
3316 3637 7.959651 CAGAAGACAATTACATGAAGCTACAAC 59.040 37.037 0.00 0.00 0.00 3.32
3317 3638 7.880195 AGAAGACAATTACATGAAGCTACAACT 59.120 33.333 0.00 0.00 0.00 3.16
3318 3639 7.602517 AGACAATTACATGAAGCTACAACTC 57.397 36.000 0.00 0.00 0.00 3.01
3319 3640 6.311445 AGACAATTACATGAAGCTACAACTCG 59.689 38.462 0.00 0.00 0.00 4.18
3320 3641 5.163854 ACAATTACATGAAGCTACAACTCGC 60.164 40.000 0.00 0.00 0.00 5.03
3321 3642 2.751166 ACATGAAGCTACAACTCGCT 57.249 45.000 0.00 0.00 38.30 4.93
3322 3643 3.868757 ACATGAAGCTACAACTCGCTA 57.131 42.857 0.00 0.00 34.96 4.26
3323 3644 3.512680 ACATGAAGCTACAACTCGCTAC 58.487 45.455 0.00 0.00 34.96 3.58
3324 3645 3.056821 ACATGAAGCTACAACTCGCTACA 60.057 43.478 0.00 0.00 34.96 2.74
3325 3646 3.653539 TGAAGCTACAACTCGCTACAA 57.346 42.857 0.00 0.00 34.96 2.41
3326 3647 3.985008 TGAAGCTACAACTCGCTACAAA 58.015 40.909 0.00 0.00 34.96 2.83
3327 3648 3.739300 TGAAGCTACAACTCGCTACAAAC 59.261 43.478 0.00 0.00 34.96 2.93
3328 3649 3.380479 AGCTACAACTCGCTACAAACA 57.620 42.857 0.00 0.00 34.11 2.83
3329 3650 3.724374 AGCTACAACTCGCTACAAACAA 58.276 40.909 0.00 0.00 34.11 2.83
3330 3651 3.493503 AGCTACAACTCGCTACAAACAAC 59.506 43.478 0.00 0.00 34.11 3.32
3331 3652 3.660904 GCTACAACTCGCTACAAACAACG 60.661 47.826 0.00 0.00 0.00 4.10
3332 3653 1.595794 ACAACTCGCTACAAACAACGG 59.404 47.619 0.00 0.00 0.00 4.44
3333 3654 1.595794 CAACTCGCTACAAACAACGGT 59.404 47.619 0.00 0.00 0.00 4.83
3334 3655 1.944032 ACTCGCTACAAACAACGGTT 58.056 45.000 0.00 0.00 39.43 4.44
3335 3656 1.595794 ACTCGCTACAAACAACGGTTG 59.404 47.619 18.81 18.81 37.30 3.77
3337 3658 2.796031 CTCGCTACAAACAACGGTTGTA 59.204 45.455 25.31 10.12 44.59 2.41
3338 3659 2.796031 TCGCTACAAACAACGGTTGTAG 59.204 45.455 25.31 21.98 44.59 2.74
3339 3660 2.796031 CGCTACAAACAACGGTTGTAGA 59.204 45.455 27.73 10.91 44.59 2.59
3340 3661 3.245754 CGCTACAAACAACGGTTGTAGAA 59.754 43.478 27.73 11.38 44.59 2.10
3341 3662 4.521010 GCTACAAACAACGGTTGTAGAAC 58.479 43.478 27.73 12.73 44.59 3.01
3342 3663 4.034279 GCTACAAACAACGGTTGTAGAACA 59.966 41.667 27.73 10.15 44.59 3.18
3343 3664 4.345271 ACAAACAACGGTTGTAGAACAC 57.655 40.909 25.31 0.00 44.59 3.32
3344 3665 3.752222 ACAAACAACGGTTGTAGAACACA 59.248 39.130 25.31 0.00 44.59 3.72
3345 3666 4.092816 CAAACAACGGTTGTAGAACACAC 58.907 43.478 25.31 0.00 44.59 3.82
3346 3667 2.975266 ACAACGGTTGTAGAACACACA 58.025 42.857 24.02 0.00 43.27 3.72
3347 3668 3.336468 ACAACGGTTGTAGAACACACAA 58.664 40.909 24.02 0.00 43.27 3.33
3354 3675 2.634600 TGTAGAACACACAACACACCC 58.365 47.619 0.00 0.00 30.04 4.61
3355 3676 1.595794 GTAGAACACACAACACACCCG 59.404 52.381 0.00 0.00 0.00 5.28
3356 3677 0.250793 AGAACACACAACACACCCGA 59.749 50.000 0.00 0.00 0.00 5.14
3357 3678 0.655733 GAACACACAACACACCCGAG 59.344 55.000 0.00 0.00 0.00 4.63
3358 3679 1.373590 AACACACAACACACCCGAGC 61.374 55.000 0.00 0.00 0.00 5.03
3359 3680 1.523711 CACACAACACACCCGAGCT 60.524 57.895 0.00 0.00 0.00 4.09
3360 3681 0.249699 CACACAACACACCCGAGCTA 60.250 55.000 0.00 0.00 0.00 3.32
3361 3682 0.466543 ACACAACACACCCGAGCTAA 59.533 50.000 0.00 0.00 0.00 3.09
3362 3683 1.071699 ACACAACACACCCGAGCTAAT 59.928 47.619 0.00 0.00 0.00 1.73
3363 3684 1.732259 CACAACACACCCGAGCTAATC 59.268 52.381 0.00 0.00 0.00 1.75
3364 3685 1.338769 ACAACACACCCGAGCTAATCC 60.339 52.381 0.00 0.00 0.00 3.01
3365 3686 0.108329 AACACACCCGAGCTAATCCG 60.108 55.000 0.00 0.00 0.00 4.18
3366 3687 0.968901 ACACACCCGAGCTAATCCGA 60.969 55.000 0.00 0.00 0.00 4.55
3367 3688 0.174845 CACACCCGAGCTAATCCGAA 59.825 55.000 0.00 0.00 0.00 4.30
3368 3689 0.460311 ACACCCGAGCTAATCCGAAG 59.540 55.000 0.00 0.00 0.00 3.79
3369 3690 0.744874 CACCCGAGCTAATCCGAAGA 59.255 55.000 0.00 0.00 0.00 2.87
3370 3691 1.136305 CACCCGAGCTAATCCGAAGAA 59.864 52.381 0.00 0.00 0.00 2.52
3371 3692 1.829222 ACCCGAGCTAATCCGAAGAAA 59.171 47.619 0.00 0.00 0.00 2.52
3372 3693 2.235402 ACCCGAGCTAATCCGAAGAAAA 59.765 45.455 0.00 0.00 0.00 2.29
3373 3694 2.866762 CCCGAGCTAATCCGAAGAAAAG 59.133 50.000 0.00 0.00 0.00 2.27
3374 3695 3.522553 CCGAGCTAATCCGAAGAAAAGT 58.477 45.455 0.00 0.00 0.00 2.66
3375 3696 3.552294 CCGAGCTAATCCGAAGAAAAGTC 59.448 47.826 0.00 0.00 0.00 3.01
3376 3697 4.425520 CGAGCTAATCCGAAGAAAAGTCT 58.574 43.478 0.00 0.00 34.72 3.24
3377 3698 4.501198 CGAGCTAATCCGAAGAAAAGTCTC 59.499 45.833 0.00 0.00 30.70 3.36
3378 3699 4.760878 AGCTAATCCGAAGAAAAGTCTCC 58.239 43.478 0.00 0.00 30.70 3.71
3379 3700 3.552294 GCTAATCCGAAGAAAAGTCTCCG 59.448 47.826 0.00 0.00 30.12 4.63
3380 3701 2.011540 ATCCGAAGAAAAGTCTCCGC 57.988 50.000 0.00 0.00 28.65 5.54
3381 3702 0.677288 TCCGAAGAAAAGTCTCCGCA 59.323 50.000 0.00 0.00 28.65 5.69
3382 3703 0.790814 CCGAAGAAAAGTCTCCGCAC 59.209 55.000 0.00 0.00 28.65 5.34
3383 3704 1.497991 CGAAGAAAAGTCTCCGCACA 58.502 50.000 0.00 0.00 30.70 4.57
3384 3705 1.192534 CGAAGAAAAGTCTCCGCACAC 59.807 52.381 0.00 0.00 30.70 3.82
3385 3706 2.210116 GAAGAAAAGTCTCCGCACACA 58.790 47.619 0.00 0.00 30.70 3.72
3386 3707 2.550830 AGAAAAGTCTCCGCACACAT 57.449 45.000 0.00 0.00 0.00 3.21
3387 3708 2.851195 AGAAAAGTCTCCGCACACATT 58.149 42.857 0.00 0.00 0.00 2.71
3388 3709 4.002906 AGAAAAGTCTCCGCACACATTA 57.997 40.909 0.00 0.00 0.00 1.90
3389 3710 3.746492 AGAAAAGTCTCCGCACACATTAC 59.254 43.478 0.00 0.00 0.00 1.89
3390 3711 2.831685 AAGTCTCCGCACACATTACA 57.168 45.000 0.00 0.00 0.00 2.41
3391 3712 2.831685 AGTCTCCGCACACATTACAA 57.168 45.000 0.00 0.00 0.00 2.41
3392 3713 2.688507 AGTCTCCGCACACATTACAAG 58.311 47.619 0.00 0.00 0.00 3.16
3393 3714 1.128692 GTCTCCGCACACATTACAAGC 59.871 52.381 0.00 0.00 0.00 4.01
3394 3715 1.155889 CTCCGCACACATTACAAGCA 58.844 50.000 0.00 0.00 0.00 3.91
3395 3716 0.871722 TCCGCACACATTACAAGCAC 59.128 50.000 0.00 0.00 0.00 4.40
3396 3717 0.590682 CCGCACACATTACAAGCACA 59.409 50.000 0.00 0.00 0.00 4.57
3397 3718 1.001924 CCGCACACATTACAAGCACAA 60.002 47.619 0.00 0.00 0.00 3.33
3398 3719 2.351641 CCGCACACATTACAAGCACAAT 60.352 45.455 0.00 0.00 0.00 2.71
3399 3720 3.120025 CCGCACACATTACAAGCACAATA 60.120 43.478 0.00 0.00 0.00 1.90
3400 3721 3.845775 CGCACACATTACAAGCACAATAC 59.154 43.478 0.00 0.00 0.00 1.89
3401 3722 4.612486 CGCACACATTACAAGCACAATACA 60.612 41.667 0.00 0.00 0.00 2.29
3402 3723 5.218885 GCACACATTACAAGCACAATACAA 58.781 37.500 0.00 0.00 0.00 2.41
3403 3724 5.689514 GCACACATTACAAGCACAATACAAA 59.310 36.000 0.00 0.00 0.00 2.83
3404 3725 6.129115 GCACACATTACAAGCACAATACAAAG 60.129 38.462 0.00 0.00 0.00 2.77
3405 3726 6.363088 CACACATTACAAGCACAATACAAAGG 59.637 38.462 0.00 0.00 0.00 3.11
3406 3727 6.264292 ACACATTACAAGCACAATACAAAGGA 59.736 34.615 0.00 0.00 0.00 3.36
3407 3728 6.803320 CACATTACAAGCACAATACAAAGGAG 59.197 38.462 0.00 0.00 0.00 3.69
3408 3729 3.923017 ACAAGCACAATACAAAGGAGC 57.077 42.857 0.00 0.00 0.00 4.70
3409 3730 2.558359 ACAAGCACAATACAAAGGAGCC 59.442 45.455 0.00 0.00 0.00 4.70
3410 3731 2.821969 CAAGCACAATACAAAGGAGCCT 59.178 45.455 0.00 0.00 0.00 4.58
3411 3732 2.440409 AGCACAATACAAAGGAGCCTG 58.560 47.619 0.00 0.00 0.00 4.85
3412 3733 1.135286 GCACAATACAAAGGAGCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
3413 3734 1.474077 CACAATACAAAGGAGCCTGCC 59.526 52.381 0.00 0.00 0.00 4.85
3414 3735 1.106285 CAATACAAAGGAGCCTGCCC 58.894 55.000 0.00 0.00 0.00 5.36
3415 3736 1.002857 AATACAAAGGAGCCTGCCCT 58.997 50.000 0.00 0.00 35.03 5.19
3416 3737 1.893315 ATACAAAGGAGCCTGCCCTA 58.107 50.000 0.00 0.00 32.77 3.53
3417 3738 1.663911 TACAAAGGAGCCTGCCCTAA 58.336 50.000 0.00 0.00 32.77 2.69
3418 3739 0.329596 ACAAAGGAGCCTGCCCTAAG 59.670 55.000 0.00 0.32 32.77 2.18
3419 3740 1.034292 CAAAGGAGCCTGCCCTAAGC 61.034 60.000 0.00 0.00 44.14 3.09
3429 3750 3.003740 GCCCTAAGCAGAGCATCAG 57.996 57.895 0.00 0.00 42.97 2.90
3430 3751 0.467384 GCCCTAAGCAGAGCATCAGA 59.533 55.000 0.00 0.00 42.97 3.27
3431 3752 1.540797 GCCCTAAGCAGAGCATCAGAG 60.541 57.143 0.00 0.00 42.97 3.35
3432 3753 1.540797 CCCTAAGCAGAGCATCAGAGC 60.541 57.143 0.00 0.00 37.82 4.09
3433 3754 1.540797 CCTAAGCAGAGCATCAGAGCC 60.541 57.143 0.00 0.00 37.82 4.70
3434 3755 0.103755 TAAGCAGAGCATCAGAGCCG 59.896 55.000 0.00 0.00 37.82 5.52
3435 3756 3.270839 GCAGAGCATCAGAGCCGC 61.271 66.667 0.00 0.00 37.82 6.53
3436 3757 2.960659 CAGAGCATCAGAGCCGCG 60.961 66.667 0.00 0.00 37.82 6.46
3437 3758 3.456365 AGAGCATCAGAGCCGCGT 61.456 61.111 4.92 0.00 37.82 6.01
3438 3759 2.959071 GAGCATCAGAGCCGCGTC 60.959 66.667 4.92 0.00 34.23 5.19
3439 3760 3.423162 GAGCATCAGAGCCGCGTCT 62.423 63.158 4.92 0.00 34.23 4.18
3440 3761 2.959071 GCATCAGAGCCGCGTCTC 60.959 66.667 9.56 9.56 0.00 3.36
3441 3762 2.653448 CATCAGAGCCGCGTCTCG 60.653 66.667 11.97 7.07 38.12 4.04
3442 3763 2.824489 ATCAGAGCCGCGTCTCGA 60.824 61.111 11.97 12.26 41.67 4.04
3443 3764 3.114647 ATCAGAGCCGCGTCTCGAC 62.115 63.158 11.97 0.00 41.67 4.20
3444 3765 4.838486 CAGAGCCGCGTCTCGACC 62.838 72.222 11.97 0.00 41.67 4.79
3446 3767 4.415332 GAGCCGCGTCTCGACCAA 62.415 66.667 0.00 0.00 41.67 3.67
3447 3768 3.701604 GAGCCGCGTCTCGACCAAT 62.702 63.158 0.00 0.00 41.67 3.16
3448 3769 2.103538 GCCGCGTCTCGACCAATA 59.896 61.111 4.92 0.00 41.67 1.90
3449 3770 2.228914 GCCGCGTCTCGACCAATAC 61.229 63.158 4.92 0.00 41.67 1.89
3450 3771 1.588139 CCGCGTCTCGACCAATACC 60.588 63.158 4.92 0.00 41.67 2.73
3451 3772 1.937846 CGCGTCTCGACCAATACCG 60.938 63.158 0.00 0.00 41.67 4.02
3452 3773 1.430632 GCGTCTCGACCAATACCGA 59.569 57.895 0.00 0.00 0.00 4.69
3453 3774 0.030369 GCGTCTCGACCAATACCGAT 59.970 55.000 0.00 0.00 34.08 4.18
3454 3775 1.925068 GCGTCTCGACCAATACCGATC 60.925 57.143 0.00 0.00 34.08 3.69
3455 3776 1.332686 CGTCTCGACCAATACCGATCA 59.667 52.381 0.00 0.00 34.08 2.92
3456 3777 2.728922 GTCTCGACCAATACCGATCAC 58.271 52.381 0.00 0.00 34.08 3.06
3457 3778 1.679680 TCTCGACCAATACCGATCACC 59.320 52.381 0.00 0.00 34.08 4.02
3458 3779 1.681793 CTCGACCAATACCGATCACCT 59.318 52.381 0.00 0.00 34.08 4.00
3459 3780 1.679680 TCGACCAATACCGATCACCTC 59.320 52.381 0.00 0.00 0.00 3.85
3478 3799 1.867233 TCGAAGAGCAACAACTTCAGC 59.133 47.619 0.00 0.00 41.47 4.26
3479 3800 1.069636 CGAAGAGCAACAACTTCAGCC 60.070 52.381 0.00 0.00 41.47 4.85
3480 3801 0.947244 AAGAGCAACAACTTCAGCCG 59.053 50.000 0.00 0.00 0.00 5.52
3481 3802 0.886490 AGAGCAACAACTTCAGCCGG 60.886 55.000 0.00 0.00 0.00 6.13
3482 3803 0.884704 GAGCAACAACTTCAGCCGGA 60.885 55.000 5.05 0.00 0.00 5.14
3483 3804 1.166531 AGCAACAACTTCAGCCGGAC 61.167 55.000 5.05 0.00 0.00 4.79
3484 3805 1.444119 GCAACAACTTCAGCCGGACA 61.444 55.000 5.05 0.00 0.00 4.02
3485 3806 1.238439 CAACAACTTCAGCCGGACAT 58.762 50.000 5.05 0.00 0.00 3.06
3486 3807 1.197721 CAACAACTTCAGCCGGACATC 59.802 52.381 5.05 0.00 0.00 3.06
3487 3808 0.321653 ACAACTTCAGCCGGACATCC 60.322 55.000 5.05 0.00 0.00 3.51
3488 3809 1.026718 CAACTTCAGCCGGACATCCC 61.027 60.000 5.05 0.00 0.00 3.85
3489 3810 1.201429 AACTTCAGCCGGACATCCCT 61.201 55.000 5.05 0.00 0.00 4.20
3490 3811 1.201429 ACTTCAGCCGGACATCCCTT 61.201 55.000 5.05 0.00 0.00 3.95
3491 3812 0.745845 CTTCAGCCGGACATCCCTTG 60.746 60.000 5.05 0.00 0.00 3.61
3492 3813 1.488705 TTCAGCCGGACATCCCTTGT 61.489 55.000 5.05 0.00 42.79 3.16
3498 3819 3.782042 GACATCCCTTGTCGACGC 58.218 61.111 11.62 0.00 45.00 5.19
3499 3820 1.080093 GACATCCCTTGTCGACGCA 60.080 57.895 11.62 0.00 45.00 5.24
3500 3821 1.352156 GACATCCCTTGTCGACGCAC 61.352 60.000 11.62 0.00 45.00 5.34
3501 3822 2.100631 CATCCCTTGTCGACGCACC 61.101 63.158 11.62 0.00 0.00 5.01
3502 3823 2.579657 ATCCCTTGTCGACGCACCA 61.580 57.895 11.62 0.00 0.00 4.17
3503 3824 1.899437 ATCCCTTGTCGACGCACCAT 61.899 55.000 11.62 0.00 0.00 3.55
3504 3825 2.100631 CCCTTGTCGACGCACCATC 61.101 63.158 11.62 0.00 0.00 3.51
3505 3826 2.100631 CCTTGTCGACGCACCATCC 61.101 63.158 11.62 0.00 0.00 3.51
3506 3827 1.374125 CTTGTCGACGCACCATCCA 60.374 57.895 11.62 0.00 0.00 3.41
3507 3828 1.626654 CTTGTCGACGCACCATCCAC 61.627 60.000 11.62 0.00 0.00 4.02
3508 3829 2.813908 GTCGACGCACCATCCACC 60.814 66.667 0.00 0.00 0.00 4.61
3509 3830 4.077184 TCGACGCACCATCCACCC 62.077 66.667 0.00 0.00 0.00 4.61
3510 3831 4.082523 CGACGCACCATCCACCCT 62.083 66.667 0.00 0.00 0.00 4.34
3511 3832 2.351276 GACGCACCATCCACCCTT 59.649 61.111 0.00 0.00 0.00 3.95
3512 3833 2.034066 ACGCACCATCCACCCTTG 59.966 61.111 0.00 0.00 0.00 3.61
3513 3834 2.350895 CGCACCATCCACCCTTGA 59.649 61.111 0.00 0.00 0.00 3.02
3514 3835 1.303236 CGCACCATCCACCCTTGAA 60.303 57.895 0.00 0.00 0.00 2.69
3515 3836 0.680921 CGCACCATCCACCCTTGAAT 60.681 55.000 0.00 0.00 0.00 2.57
3516 3837 0.819582 GCACCATCCACCCTTGAATG 59.180 55.000 0.00 0.00 0.00 2.67
3517 3838 0.819582 CACCATCCACCCTTGAATGC 59.180 55.000 0.00 0.00 0.00 3.56
3518 3839 0.324645 ACCATCCACCCTTGAATGCC 60.325 55.000 0.00 0.00 0.00 4.40
3519 3840 1.386525 CCATCCACCCTTGAATGCCG 61.387 60.000 0.00 0.00 0.00 5.69
3520 3841 0.394216 CATCCACCCTTGAATGCCGA 60.394 55.000 0.00 0.00 0.00 5.54
3521 3842 0.331278 ATCCACCCTTGAATGCCGAA 59.669 50.000 0.00 0.00 0.00 4.30
3522 3843 0.111446 TCCACCCTTGAATGCCGAAA 59.889 50.000 0.00 0.00 0.00 3.46
3523 3844 0.965439 CCACCCTTGAATGCCGAAAA 59.035 50.000 0.00 0.00 0.00 2.29
3524 3845 1.342819 CCACCCTTGAATGCCGAAAAA 59.657 47.619 0.00 0.00 0.00 1.94
3540 3861 1.826385 AAAAAGAGATGGCGAGTGGG 58.174 50.000 0.00 0.00 0.00 4.61
3541 3862 0.693049 AAAAGAGATGGCGAGTGGGT 59.307 50.000 0.00 0.00 0.00 4.51
3542 3863 0.036010 AAAGAGATGGCGAGTGGGTG 60.036 55.000 0.00 0.00 0.00 4.61
3543 3864 1.903877 AAGAGATGGCGAGTGGGTGG 61.904 60.000 0.00 0.00 0.00 4.61
3544 3865 4.101448 AGATGGCGAGTGGGTGGC 62.101 66.667 0.00 0.00 0.00 5.01
3551 3872 4.083862 GAGTGGGTGGCGGGACTC 62.084 72.222 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.444742 ACCACGATGACATGCAAATTCAT 59.555 39.130 7.57 7.57 32.53 2.57
3 4 2.819019 ACCACGATGACATGCAAATTCA 59.181 40.909 0.00 0.00 0.00 2.57
4 5 3.492421 ACCACGATGACATGCAAATTC 57.508 42.857 0.00 0.00 0.00 2.17
6 7 3.940209 AAACCACGATGACATGCAAAT 57.060 38.095 0.00 0.00 0.00 2.32
7 8 3.724508 AAAACCACGATGACATGCAAA 57.275 38.095 0.00 0.00 0.00 3.68
8 9 3.724508 AAAAACCACGATGACATGCAA 57.275 38.095 0.00 0.00 0.00 4.08
25 26 8.898761 ACATTACCATATAATCACAGCGAAAAA 58.101 29.630 0.00 0.00 0.00 1.94
26 27 8.445275 ACATTACCATATAATCACAGCGAAAA 57.555 30.769 0.00 0.00 0.00 2.29
27 28 7.931407 AGACATTACCATATAATCACAGCGAAA 59.069 33.333 0.00 0.00 0.00 3.46
28 29 7.384932 CAGACATTACCATATAATCACAGCGAA 59.615 37.037 0.00 0.00 0.00 4.70
29 30 6.868339 CAGACATTACCATATAATCACAGCGA 59.132 38.462 0.00 0.00 0.00 4.93
30 31 6.401474 GCAGACATTACCATATAATCACAGCG 60.401 42.308 0.00 0.00 0.00 5.18
31 32 6.128172 GGCAGACATTACCATATAATCACAGC 60.128 42.308 0.00 0.00 0.00 4.40
32 33 6.091305 CGGCAGACATTACCATATAATCACAG 59.909 42.308 0.00 0.00 0.00 3.66
33 34 5.931724 CGGCAGACATTACCATATAATCACA 59.068 40.000 0.00 0.00 0.00 3.58
34 35 5.932303 ACGGCAGACATTACCATATAATCAC 59.068 40.000 0.00 0.00 0.00 3.06
35 36 6.109156 ACGGCAGACATTACCATATAATCA 57.891 37.500 0.00 0.00 0.00 2.57
36 37 6.163476 TGACGGCAGACATTACCATATAATC 58.837 40.000 0.00 0.00 0.00 1.75
37 38 6.109156 TGACGGCAGACATTACCATATAAT 57.891 37.500 0.00 0.00 0.00 1.28
38 39 5.538849 TGACGGCAGACATTACCATATAA 57.461 39.130 0.00 0.00 0.00 0.98
39 40 5.738619 ATGACGGCAGACATTACCATATA 57.261 39.130 0.00 0.00 28.83 0.86
40 41 4.623932 ATGACGGCAGACATTACCATAT 57.376 40.909 0.00 0.00 28.83 1.78
41 42 4.262292 GGTATGACGGCAGACATTACCATA 60.262 45.833 19.28 0.00 37.97 2.74
42 43 3.494398 GGTATGACGGCAGACATTACCAT 60.494 47.826 19.28 0.00 37.97 3.55
43 44 2.159014 GGTATGACGGCAGACATTACCA 60.159 50.000 19.28 0.00 37.97 3.25
44 45 2.102588 AGGTATGACGGCAGACATTACC 59.897 50.000 19.28 14.03 37.97 2.85
45 46 3.123804 CAGGTATGACGGCAGACATTAC 58.876 50.000 19.28 4.22 37.97 1.89
46 47 3.028130 TCAGGTATGACGGCAGACATTA 58.972 45.455 19.28 0.00 37.97 1.90
47 48 1.831106 TCAGGTATGACGGCAGACATT 59.169 47.619 19.28 1.99 37.97 2.71
48 49 1.485124 TCAGGTATGACGGCAGACAT 58.515 50.000 19.28 8.17 37.97 3.06
49 50 1.136891 CATCAGGTATGACGGCAGACA 59.863 52.381 19.28 0.00 37.97 3.41
50 51 1.858091 CATCAGGTATGACGGCAGAC 58.142 55.000 7.72 7.72 38.57 3.51
51 52 0.104855 GCATCAGGTATGACGGCAGA 59.895 55.000 0.00 0.00 38.57 4.26
52 53 1.217585 CGCATCAGGTATGACGGCAG 61.218 60.000 0.00 0.00 38.57 4.85
53 54 1.227234 CGCATCAGGTATGACGGCA 60.227 57.895 0.00 0.00 38.57 5.69
54 55 0.319900 ATCGCATCAGGTATGACGGC 60.320 55.000 0.00 0.00 38.57 5.68
55 56 1.000274 TCATCGCATCAGGTATGACGG 60.000 52.381 0.00 0.00 38.57 4.79
56 57 2.422276 TCATCGCATCAGGTATGACG 57.578 50.000 0.00 0.00 38.57 4.35
57 58 2.478134 GCTTCATCGCATCAGGTATGAC 59.522 50.000 0.00 0.00 38.57 3.06
58 59 2.548707 GGCTTCATCGCATCAGGTATGA 60.549 50.000 0.00 0.00 37.86 2.15
59 60 1.802960 GGCTTCATCGCATCAGGTATG 59.197 52.381 0.00 0.00 38.74 2.39
60 61 1.417517 TGGCTTCATCGCATCAGGTAT 59.582 47.619 0.00 0.00 0.00 2.73
61 62 0.829990 TGGCTTCATCGCATCAGGTA 59.170 50.000 0.00 0.00 0.00 3.08
62 63 0.035152 TTGGCTTCATCGCATCAGGT 60.035 50.000 0.00 0.00 0.00 4.00
63 64 1.097232 TTTGGCTTCATCGCATCAGG 58.903 50.000 0.00 0.00 0.00 3.86
64 65 2.098607 ACATTTGGCTTCATCGCATCAG 59.901 45.455 0.00 0.00 0.00 2.90
65 66 2.093890 ACATTTGGCTTCATCGCATCA 58.906 42.857 0.00 0.00 0.00 3.07
66 67 2.857592 ACATTTGGCTTCATCGCATC 57.142 45.000 0.00 0.00 0.00 3.91
67 68 4.924305 ATAACATTTGGCTTCATCGCAT 57.076 36.364 0.00 0.00 0.00 4.73
68 69 4.637977 TGTATAACATTTGGCTTCATCGCA 59.362 37.500 0.00 0.00 0.00 5.10
69 70 5.168526 TGTATAACATTTGGCTTCATCGC 57.831 39.130 0.00 0.00 0.00 4.58
70 71 5.207768 GCTGTATAACATTTGGCTTCATCG 58.792 41.667 0.00 0.00 0.00 3.84
71 72 5.207768 CGCTGTATAACATTTGGCTTCATC 58.792 41.667 0.00 0.00 0.00 2.92
72 73 4.640201 ACGCTGTATAACATTTGGCTTCAT 59.360 37.500 0.00 0.00 0.00 2.57
73 74 4.006989 ACGCTGTATAACATTTGGCTTCA 58.993 39.130 0.00 0.00 0.00 3.02
74 75 4.342772 CACGCTGTATAACATTTGGCTTC 58.657 43.478 0.00 0.00 0.00 3.86
75 76 3.128589 CCACGCTGTATAACATTTGGCTT 59.871 43.478 0.00 0.00 0.00 4.35
76 77 2.682856 CCACGCTGTATAACATTTGGCT 59.317 45.455 0.00 0.00 0.00 4.75
77 78 2.680841 TCCACGCTGTATAACATTTGGC 59.319 45.455 0.00 0.00 0.00 4.52
89 90 3.553095 GAAAGGGGCTCCACGCTGT 62.553 63.158 4.79 0.00 39.13 4.40
138 139 1.286501 GTCGATGCAATACGCTCCAA 58.713 50.000 0.00 0.00 43.06 3.53
140 141 1.286501 TTGTCGATGCAATACGCTCC 58.713 50.000 0.00 0.00 43.06 4.70
141 142 2.896289 CATTGTCGATGCAATACGCTC 58.104 47.619 0.00 0.00 43.06 5.03
207 216 4.512944 TGTTCACACTGATTCTCTTCTTGC 59.487 41.667 0.00 0.00 0.00 4.01
277 293 4.456566 GGTTTTGTTTCCTGCGTATTCCTA 59.543 41.667 0.00 0.00 0.00 2.94
280 296 4.231718 TGGTTTTGTTTCCTGCGTATTC 57.768 40.909 0.00 0.00 0.00 1.75
341 371 1.889530 CGGTTCCGAGCCTCCTTTCT 61.890 60.000 5.19 0.00 0.00 2.52
342 372 1.448013 CGGTTCCGAGCCTCCTTTC 60.448 63.158 5.19 0.00 0.00 2.62
343 373 2.663196 CGGTTCCGAGCCTCCTTT 59.337 61.111 5.19 0.00 0.00 3.11
344 374 4.083862 GCGGTTCCGAGCCTCCTT 62.084 66.667 15.69 0.00 0.00 3.36
428 463 4.692475 AAGGAACGGCCGAACGGG 62.692 66.667 35.90 0.55 43.43 5.28
429 464 3.419759 CAAGGAACGGCCGAACGG 61.420 66.667 35.90 12.04 43.43 4.44
431 466 2.322830 GGACAAGGAACGGCCGAAC 61.323 63.158 35.90 23.74 43.43 3.95
432 467 2.031465 GGACAAGGAACGGCCGAA 59.969 61.111 35.90 0.00 43.43 4.30
433 468 3.235481 TGGACAAGGAACGGCCGA 61.235 61.111 35.90 0.68 43.43 5.54
434 469 3.047877 GTGGACAAGGAACGGCCG 61.048 66.667 26.86 26.86 43.43 6.13
435 470 0.822121 AAAGTGGACAAGGAACGGCC 60.822 55.000 0.00 0.00 0.00 6.13
436 471 0.591659 GAAAGTGGACAAGGAACGGC 59.408 55.000 0.00 0.00 0.00 5.68
993 1033 4.790962 CTGCAGGCCATGGCGTCT 62.791 66.667 28.53 18.83 43.06 4.18
1107 1147 2.125147 ATGGCACCATGACCGTCG 60.125 61.111 0.16 0.00 35.03 5.12
1112 1152 1.450134 TGCTCGATGGCACCATGAC 60.450 57.895 6.96 0.00 37.29 3.06
1199 1239 0.944386 TGAAGAAACGCTCCAACTGC 59.056 50.000 0.00 0.00 0.00 4.40
1200 1240 3.904136 ATTGAAGAAACGCTCCAACTG 57.096 42.857 0.00 0.00 0.00 3.16
1201 1241 3.253432 GGAATTGAAGAAACGCTCCAACT 59.747 43.478 0.00 0.00 0.00 3.16
1248 1303 0.174845 CTCCATGCCTGCAACAATGG 59.825 55.000 12.80 12.80 0.00 3.16
1330 1385 1.737363 GCACTCACTCGGATCAGTTCC 60.737 57.143 0.00 0.00 41.59 3.62
1393 1448 1.775385 AGAAAAAGGTGGTGGTGGTG 58.225 50.000 0.00 0.00 0.00 4.17
1399 1454 2.296190 GGCCAGTAAGAAAAAGGTGGTG 59.704 50.000 0.00 0.00 0.00 4.17
1429 1484 2.011122 TCGGGAAACTCTGAAGAGGT 57.989 50.000 11.87 1.83 45.56 3.85
1440 1495 2.778187 CTCGTCTAGGATCGGGAAAC 57.222 55.000 0.00 0.00 0.00 2.78
1482 1537 3.681897 GCTTGTATCCTCGATAATGCAGG 59.318 47.826 0.00 0.00 0.00 4.85
1490 1545 1.759445 AGCAGTGCTTGTATCCTCGAT 59.241 47.619 13.14 0.00 33.89 3.59
1507 1562 1.171308 GGAAAGAAGCATCAGCAGCA 58.829 50.000 0.00 0.00 45.49 4.41
1531 1586 5.290158 GTCGTAACCTGCATTCGAATTCTTA 59.710 40.000 8.21 0.00 32.56 2.10
1552 1607 8.687824 AACCAAGATAAGCAAATTAAATGTCG 57.312 30.769 0.00 0.00 0.00 4.35
1574 1637 2.139118 GCTGTCTGAAGAGTGTGAACC 58.861 52.381 0.00 0.00 0.00 3.62
1595 1658 2.614829 ACGCCAAGTACTGACAAACT 57.385 45.000 0.00 0.00 0.00 2.66
1602 1665 6.027749 GGAATTAATGAAACGCCAAGTACTG 58.972 40.000 0.00 0.00 0.00 2.74
1606 1669 5.410067 CATGGAATTAATGAAACGCCAAGT 58.590 37.500 0.00 0.00 30.06 3.16
1609 1672 3.766591 ACCATGGAATTAATGAAACGCCA 59.233 39.130 21.47 0.00 0.00 5.69
1612 1675 5.101628 CACCACCATGGAATTAATGAAACG 58.898 41.667 21.47 0.00 40.96 3.60
1621 1684 3.825908 AAGTACCACCACCATGGAATT 57.174 42.857 21.47 0.00 43.02 2.17
1623 1686 3.492337 GAAAAGTACCACCACCATGGAA 58.508 45.455 21.47 0.00 43.02 3.53
1632 1695 6.155737 TCCTAGATACTTGGAAAAGTACCACC 59.844 42.308 0.64 0.00 38.01 4.61
1633 1696 7.040494 GTCCTAGATACTTGGAAAAGTACCAC 58.960 42.308 3.83 0.00 37.16 4.16
1685 1752 4.858850 TGAATCTCCTAACCACCGTAGTA 58.141 43.478 0.00 0.00 0.00 1.82
1733 1800 1.098050 GGCTTAGGACAGCATTGTGG 58.902 55.000 0.00 0.00 42.10 4.17
1738 1805 1.216064 TGATGGGCTTAGGACAGCAT 58.784 50.000 0.00 0.00 42.10 3.79
1922 1991 2.027385 GGGCCCAGTTTGATGAGATTC 58.973 52.381 19.95 0.00 0.00 2.52
1951 2020 6.640907 GCCTATCAGTTTGGTGTTTAACAAAG 59.359 38.462 0.00 0.00 37.27 2.77
1953 2022 5.830991 AGCCTATCAGTTTGGTGTTTAACAA 59.169 36.000 0.00 0.00 0.00 2.83
1954 2023 5.381757 AGCCTATCAGTTTGGTGTTTAACA 58.618 37.500 0.00 0.00 0.00 2.41
1955 2024 5.705905 AGAGCCTATCAGTTTGGTGTTTAAC 59.294 40.000 0.00 0.00 0.00 2.01
1960 2032 2.616510 GCAGAGCCTATCAGTTTGGTGT 60.617 50.000 0.00 0.00 0.00 4.16
2084 2370 3.195002 CCGTGGCGATTGCACGAT 61.195 61.111 23.11 0.00 43.49 3.73
2108 2394 3.260483 CGAGTGATCTGGCGCTGC 61.260 66.667 7.64 0.00 0.00 5.25
2167 2453 2.334838 GTCAGTAAGCTGGGTTGTACG 58.665 52.381 0.00 0.00 42.78 3.67
2178 2472 4.833390 ACTAAATGGACAGGTCAGTAAGC 58.167 43.478 1.41 0.00 0.00 3.09
2185 2479 6.485648 ACTTGTTGTTACTAAATGGACAGGTC 59.514 38.462 0.00 0.00 0.00 3.85
2203 2497 5.801947 GCATTAGCACCAGATTAACTTGTTG 59.198 40.000 0.00 0.00 41.58 3.33
2215 2509 3.058432 GCATCATACAGCATTAGCACCAG 60.058 47.826 0.00 0.00 45.49 4.00
2640 2937 6.073385 CGATTGATCATTGGTCATTAGTGGAG 60.073 42.308 0.00 0.00 0.00 3.86
2641 2938 5.759763 CGATTGATCATTGGTCATTAGTGGA 59.240 40.000 0.00 0.00 0.00 4.02
2642 2939 5.528690 ACGATTGATCATTGGTCATTAGTGG 59.471 40.000 0.00 0.00 0.00 4.00
2643 2940 6.609237 ACGATTGATCATTGGTCATTAGTG 57.391 37.500 0.00 0.00 0.00 2.74
2644 2941 6.706270 GGTACGATTGATCATTGGTCATTAGT 59.294 38.462 8.30 6.62 0.00 2.24
2645 2942 7.121974 GGTACGATTGATCATTGGTCATTAG 57.878 40.000 8.30 0.82 0.00 1.73
2669 2966 1.509934 CGTCATGCATTTCATTTCGCG 59.490 47.619 0.00 0.00 31.79 5.87
2677 2974 1.089920 ACAGCCTCGTCATGCATTTC 58.910 50.000 0.00 0.00 0.00 2.17
2687 2984 2.425312 CTCTCAGTTCATACAGCCTCGT 59.575 50.000 0.00 0.00 0.00 4.18
2768 3067 9.445786 TCTTTATTTTGCTTTAAAAGACTCGTG 57.554 29.630 0.00 0.00 41.26 4.35
2799 3098 1.661498 GAGCAAAAGCTAGCCCTGCC 61.661 60.000 22.71 14.09 33.41 4.85
2822 3121 2.551459 CCTCCGATCAATTCATCAAGCC 59.449 50.000 0.00 0.00 0.00 4.35
2841 3140 0.108329 CGTACGATCCAAAGGTGCCT 60.108 55.000 10.44 0.00 0.00 4.75
3004 3304 3.059166 ACAGAAATGCGCAATTTTCCAC 58.941 40.909 25.33 8.84 38.64 4.02
3093 3393 6.212955 GCAACCGTGGCAAATTATTACATAT 58.787 36.000 0.00 0.00 0.00 1.78
3094 3394 5.583495 GCAACCGTGGCAAATTATTACATA 58.417 37.500 0.00 0.00 0.00 2.29
3095 3395 4.429108 GCAACCGTGGCAAATTATTACAT 58.571 39.130 0.00 0.00 0.00 2.29
3096 3396 3.670895 CGCAACCGTGGCAAATTATTACA 60.671 43.478 0.00 0.00 0.00 2.41
3097 3397 2.849473 CGCAACCGTGGCAAATTATTAC 59.151 45.455 0.00 0.00 0.00 1.89
3098 3398 3.138205 CGCAACCGTGGCAAATTATTA 57.862 42.857 0.00 0.00 0.00 0.98
3099 3399 1.989430 CGCAACCGTGGCAAATTATT 58.011 45.000 0.00 0.00 0.00 1.40
3100 3400 3.712020 CGCAACCGTGGCAAATTAT 57.288 47.368 0.00 0.00 0.00 1.28
3246 3567 5.209240 CGCCTTTGACGTATTCTTGAAAAA 58.791 37.500 0.00 0.00 0.00 1.94
3247 3568 4.273969 ACGCCTTTGACGTATTCTTGAAAA 59.726 37.500 0.00 0.00 43.02 2.29
3248 3569 3.810941 ACGCCTTTGACGTATTCTTGAAA 59.189 39.130 0.00 0.00 43.02 2.69
3249 3570 3.395639 ACGCCTTTGACGTATTCTTGAA 58.604 40.909 0.00 0.00 43.02 2.69
3250 3571 3.034721 ACGCCTTTGACGTATTCTTGA 57.965 42.857 0.00 0.00 43.02 3.02
3251 3572 3.061697 GGTACGCCTTTGACGTATTCTTG 59.938 47.826 0.00 0.00 46.52 3.02
3252 3573 3.256558 GGTACGCCTTTGACGTATTCTT 58.743 45.455 0.00 0.00 46.52 2.52
3253 3574 2.231964 TGGTACGCCTTTGACGTATTCT 59.768 45.455 0.00 0.00 46.52 2.40
3254 3575 2.609350 TGGTACGCCTTTGACGTATTC 58.391 47.619 0.00 0.00 46.52 1.75
3255 3576 2.747396 TGGTACGCCTTTGACGTATT 57.253 45.000 0.00 0.00 46.52 1.89
3256 3577 2.973694 ATGGTACGCCTTTGACGTAT 57.026 45.000 0.00 0.00 46.52 3.06
3257 3578 4.389890 AATATGGTACGCCTTTGACGTA 57.610 40.909 0.00 0.00 44.55 3.57
3259 3580 4.609691 AAAATATGGTACGCCTTTGACG 57.390 40.909 0.00 0.00 35.27 4.35
3265 3586 9.398538 TGTCTTTTATAAAAATATGGTACGCCT 57.601 29.630 11.62 0.00 35.27 5.52
3266 3587 9.659830 CTGTCTTTTATAAAAATATGGTACGCC 57.340 33.333 11.62 0.00 0.00 5.68
3284 3605 8.078596 GCTTCATGTAATTGTCTTCTGTCTTTT 58.921 33.333 0.00 0.00 0.00 2.27
3285 3606 7.446625 AGCTTCATGTAATTGTCTTCTGTCTTT 59.553 33.333 0.00 0.00 0.00 2.52
3286 3607 6.939163 AGCTTCATGTAATTGTCTTCTGTCTT 59.061 34.615 0.00 0.00 0.00 3.01
3287 3608 6.471146 AGCTTCATGTAATTGTCTTCTGTCT 58.529 36.000 0.00 0.00 0.00 3.41
3288 3609 6.734104 AGCTTCATGTAATTGTCTTCTGTC 57.266 37.500 0.00 0.00 0.00 3.51
3289 3610 7.161404 TGTAGCTTCATGTAATTGTCTTCTGT 58.839 34.615 0.00 0.00 0.00 3.41
3290 3611 7.601073 TGTAGCTTCATGTAATTGTCTTCTG 57.399 36.000 0.00 0.00 0.00 3.02
3291 3612 7.880195 AGTTGTAGCTTCATGTAATTGTCTTCT 59.120 33.333 0.00 0.00 0.00 2.85
3292 3613 8.034058 AGTTGTAGCTTCATGTAATTGTCTTC 57.966 34.615 0.00 0.00 0.00 2.87
3293 3614 7.148573 CGAGTTGTAGCTTCATGTAATTGTCTT 60.149 37.037 0.00 0.00 0.00 3.01
3294 3615 6.311445 CGAGTTGTAGCTTCATGTAATTGTCT 59.689 38.462 0.00 0.00 0.00 3.41
3295 3616 6.470160 CGAGTTGTAGCTTCATGTAATTGTC 58.530 40.000 0.00 0.00 0.00 3.18
3296 3617 5.163854 GCGAGTTGTAGCTTCATGTAATTGT 60.164 40.000 0.00 0.00 0.00 2.71
3297 3618 5.063944 AGCGAGTTGTAGCTTCATGTAATTG 59.936 40.000 0.00 0.00 41.52 2.32
3298 3619 5.178797 AGCGAGTTGTAGCTTCATGTAATT 58.821 37.500 0.00 0.00 41.52 1.40
3299 3620 4.759782 AGCGAGTTGTAGCTTCATGTAAT 58.240 39.130 0.00 0.00 41.52 1.89
3300 3621 4.188247 AGCGAGTTGTAGCTTCATGTAA 57.812 40.909 0.00 0.00 41.52 2.41
3301 3622 3.868757 AGCGAGTTGTAGCTTCATGTA 57.131 42.857 0.00 0.00 41.52 2.29
3302 3623 2.751166 AGCGAGTTGTAGCTTCATGT 57.249 45.000 0.00 0.00 41.52 3.21
3303 3624 3.511699 TGTAGCGAGTTGTAGCTTCATG 58.488 45.455 0.00 0.00 44.15 3.07
3304 3625 3.868757 TGTAGCGAGTTGTAGCTTCAT 57.131 42.857 0.00 0.00 44.15 2.57
3305 3626 3.653539 TTGTAGCGAGTTGTAGCTTCA 57.346 42.857 0.00 0.00 44.15 3.02
3306 3627 3.739300 TGTTTGTAGCGAGTTGTAGCTTC 59.261 43.478 0.00 0.00 44.15 3.86
3307 3628 3.724374 TGTTTGTAGCGAGTTGTAGCTT 58.276 40.909 0.00 0.00 44.15 3.74
3308 3629 3.380479 TGTTTGTAGCGAGTTGTAGCT 57.620 42.857 0.00 0.00 46.53 3.32
3309 3630 3.660904 CGTTGTTTGTAGCGAGTTGTAGC 60.661 47.826 0.00 0.00 0.00 3.58
3310 3631 3.121126 CCGTTGTTTGTAGCGAGTTGTAG 60.121 47.826 0.00 0.00 0.00 2.74
3311 3632 2.796031 CCGTTGTTTGTAGCGAGTTGTA 59.204 45.455 0.00 0.00 0.00 2.41
3312 3633 1.595794 CCGTTGTTTGTAGCGAGTTGT 59.404 47.619 0.00 0.00 0.00 3.32
3313 3634 1.595794 ACCGTTGTTTGTAGCGAGTTG 59.404 47.619 0.00 0.00 0.00 3.16
3314 3635 1.944032 ACCGTTGTTTGTAGCGAGTT 58.056 45.000 0.00 0.00 0.00 3.01
3315 3636 1.595794 CAACCGTTGTTTGTAGCGAGT 59.404 47.619 2.87 0.00 30.42 4.18
3316 3637 1.595794 ACAACCGTTGTTTGTAGCGAG 59.404 47.619 11.24 0.00 42.22 5.03
3317 3638 1.654317 ACAACCGTTGTTTGTAGCGA 58.346 45.000 11.24 0.00 42.22 4.93
3318 3639 2.796031 TCTACAACCGTTGTTTGTAGCG 59.204 45.455 21.52 3.57 42.22 4.26
3319 3640 4.034279 TGTTCTACAACCGTTGTTTGTAGC 59.966 41.667 21.52 8.12 42.22 3.58
3320 3641 5.063691 TGTGTTCTACAACCGTTGTTTGTAG 59.936 40.000 21.52 12.88 42.22 2.74
3321 3642 4.934001 TGTGTTCTACAACCGTTGTTTGTA 59.066 37.500 21.52 3.47 42.22 2.41
3322 3643 3.752222 TGTGTTCTACAACCGTTGTTTGT 59.248 39.130 21.52 0.41 42.22 2.83
3323 3644 4.092816 GTGTGTTCTACAACCGTTGTTTG 58.907 43.478 21.52 14.57 42.22 2.93
3324 3645 3.752222 TGTGTGTTCTACAACCGTTGTTT 59.248 39.130 21.52 0.95 42.22 2.83
3325 3646 3.336468 TGTGTGTTCTACAACCGTTGTT 58.664 40.909 21.52 6.86 42.22 2.83
3333 3654 3.011119 GGGTGTGTTGTGTGTTCTACAA 58.989 45.455 0.00 0.00 41.89 2.41
3334 3655 2.634600 GGGTGTGTTGTGTGTTCTACA 58.365 47.619 0.00 0.00 36.82 2.74
3335 3656 1.595794 CGGGTGTGTTGTGTGTTCTAC 59.404 52.381 0.00 0.00 0.00 2.59
3336 3657 1.481363 TCGGGTGTGTTGTGTGTTCTA 59.519 47.619 0.00 0.00 0.00 2.10
3337 3658 0.250793 TCGGGTGTGTTGTGTGTTCT 59.749 50.000 0.00 0.00 0.00 3.01
3338 3659 0.655733 CTCGGGTGTGTTGTGTGTTC 59.344 55.000 0.00 0.00 0.00 3.18
3339 3660 1.373590 GCTCGGGTGTGTTGTGTGTT 61.374 55.000 0.00 0.00 0.00 3.32
3340 3661 1.817941 GCTCGGGTGTGTTGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
3341 3662 0.249699 TAGCTCGGGTGTGTTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
3342 3663 0.466543 TTAGCTCGGGTGTGTTGTGT 59.533 50.000 0.00 0.00 0.00 3.72
3343 3664 1.732259 GATTAGCTCGGGTGTGTTGTG 59.268 52.381 0.00 0.00 0.00 3.33
3344 3665 1.338769 GGATTAGCTCGGGTGTGTTGT 60.339 52.381 0.00 0.00 0.00 3.32
3345 3666 1.369625 GGATTAGCTCGGGTGTGTTG 58.630 55.000 0.00 0.00 0.00 3.33
3346 3667 0.108329 CGGATTAGCTCGGGTGTGTT 60.108 55.000 0.00 0.00 0.00 3.32
3347 3668 0.968901 TCGGATTAGCTCGGGTGTGT 60.969 55.000 0.00 0.00 0.00 3.72
3348 3669 0.174845 TTCGGATTAGCTCGGGTGTG 59.825 55.000 0.00 0.00 0.00 3.82
3349 3670 0.460311 CTTCGGATTAGCTCGGGTGT 59.540 55.000 0.00 0.00 0.00 4.16
3350 3671 0.744874 TCTTCGGATTAGCTCGGGTG 59.255 55.000 0.00 0.00 0.00 4.61
3351 3672 1.481871 TTCTTCGGATTAGCTCGGGT 58.518 50.000 0.00 0.00 0.00 5.28
3352 3673 2.596904 TTTCTTCGGATTAGCTCGGG 57.403 50.000 0.00 0.00 0.00 5.14
3353 3674 3.522553 ACTTTTCTTCGGATTAGCTCGG 58.477 45.455 0.00 0.00 0.00 4.63
3354 3675 4.425520 AGACTTTTCTTCGGATTAGCTCG 58.574 43.478 0.00 0.00 0.00 5.03
3355 3676 4.806775 GGAGACTTTTCTTCGGATTAGCTC 59.193 45.833 0.00 0.00 29.47 4.09
3356 3677 4.678309 CGGAGACTTTTCTTCGGATTAGCT 60.678 45.833 0.00 0.00 45.92 3.32
3357 3678 3.552294 CGGAGACTTTTCTTCGGATTAGC 59.448 47.826 0.00 0.00 45.92 3.09
3365 3686 2.210116 TGTGTGCGGAGACTTTTCTTC 58.790 47.619 5.67 0.00 29.47 2.87
3366 3687 2.325583 TGTGTGCGGAGACTTTTCTT 57.674 45.000 5.67 0.00 29.47 2.52
3367 3688 2.550830 ATGTGTGCGGAGACTTTTCT 57.449 45.000 5.67 0.00 33.37 2.52
3368 3689 3.496884 TGTAATGTGTGCGGAGACTTTTC 59.503 43.478 10.28 6.59 0.00 2.29
3369 3690 3.472652 TGTAATGTGTGCGGAGACTTTT 58.527 40.909 10.28 4.77 0.00 2.27
3370 3691 3.120321 TGTAATGTGTGCGGAGACTTT 57.880 42.857 5.67 8.10 0.00 2.66
3371 3692 2.831685 TGTAATGTGTGCGGAGACTT 57.168 45.000 5.67 0.00 0.00 3.01
3372 3693 2.688507 CTTGTAATGTGTGCGGAGACT 58.311 47.619 5.67 0.00 0.00 3.24
3373 3694 1.128692 GCTTGTAATGTGTGCGGAGAC 59.871 52.381 0.00 0.00 0.00 3.36
3374 3695 1.270571 TGCTTGTAATGTGTGCGGAGA 60.271 47.619 0.00 0.00 0.00 3.71
3375 3696 1.135972 GTGCTTGTAATGTGTGCGGAG 60.136 52.381 0.00 0.00 0.00 4.63
3376 3697 0.871722 GTGCTTGTAATGTGTGCGGA 59.128 50.000 0.00 0.00 0.00 5.54
3377 3698 0.590682 TGTGCTTGTAATGTGTGCGG 59.409 50.000 0.00 0.00 0.00 5.69
3378 3699 2.397777 TTGTGCTTGTAATGTGTGCG 57.602 45.000 0.00 0.00 0.00 5.34
3379 3700 4.793071 TGTATTGTGCTTGTAATGTGTGC 58.207 39.130 0.00 0.00 0.00 4.57
3380 3701 6.363088 CCTTTGTATTGTGCTTGTAATGTGTG 59.637 38.462 0.00 0.00 0.00 3.82
3381 3702 6.264292 TCCTTTGTATTGTGCTTGTAATGTGT 59.736 34.615 0.00 0.00 0.00 3.72
3382 3703 6.676950 TCCTTTGTATTGTGCTTGTAATGTG 58.323 36.000 0.00 0.00 0.00 3.21
3383 3704 6.570378 GCTCCTTTGTATTGTGCTTGTAATGT 60.570 38.462 0.00 0.00 0.00 2.71
3384 3705 5.801947 GCTCCTTTGTATTGTGCTTGTAATG 59.198 40.000 0.00 0.00 0.00 1.90
3385 3706 5.105756 GGCTCCTTTGTATTGTGCTTGTAAT 60.106 40.000 0.00 0.00 0.00 1.89
3386 3707 4.217550 GGCTCCTTTGTATTGTGCTTGTAA 59.782 41.667 0.00 0.00 0.00 2.41
3387 3708 3.756434 GGCTCCTTTGTATTGTGCTTGTA 59.244 43.478 0.00 0.00 0.00 2.41
3388 3709 2.558359 GGCTCCTTTGTATTGTGCTTGT 59.442 45.455 0.00 0.00 0.00 3.16
3389 3710 2.821969 AGGCTCCTTTGTATTGTGCTTG 59.178 45.455 0.00 0.00 0.00 4.01
3390 3711 2.821969 CAGGCTCCTTTGTATTGTGCTT 59.178 45.455 0.00 0.00 0.00 3.91
3391 3712 2.440409 CAGGCTCCTTTGTATTGTGCT 58.560 47.619 0.00 0.00 0.00 4.40
3392 3713 1.135286 GCAGGCTCCTTTGTATTGTGC 60.135 52.381 0.00 0.00 0.00 4.57
3393 3714 1.474077 GGCAGGCTCCTTTGTATTGTG 59.526 52.381 0.00 0.00 0.00 3.33
3394 3715 1.616994 GGGCAGGCTCCTTTGTATTGT 60.617 52.381 0.00 0.00 0.00 2.71
3395 3716 1.106285 GGGCAGGCTCCTTTGTATTG 58.894 55.000 0.00 0.00 0.00 1.90
3396 3717 1.002857 AGGGCAGGCTCCTTTGTATT 58.997 50.000 0.00 0.00 0.00 1.89
3397 3718 1.893315 TAGGGCAGGCTCCTTTGTAT 58.107 50.000 0.00 0.00 35.92 2.29
3398 3719 1.559682 CTTAGGGCAGGCTCCTTTGTA 59.440 52.381 0.00 0.00 35.92 2.41
3399 3720 0.329596 CTTAGGGCAGGCTCCTTTGT 59.670 55.000 0.00 0.00 35.92 2.83
3400 3721 1.034292 GCTTAGGGCAGGCTCCTTTG 61.034 60.000 0.00 0.00 41.35 2.77
3401 3722 1.304617 GCTTAGGGCAGGCTCCTTT 59.695 57.895 0.00 0.00 41.35 3.11
3402 3723 3.002371 GCTTAGGGCAGGCTCCTT 58.998 61.111 0.00 0.00 41.35 3.36
3411 3732 0.467384 TCTGATGCTCTGCTTAGGGC 59.533 55.000 0.00 0.00 42.22 5.19
3412 3733 1.540797 GCTCTGATGCTCTGCTTAGGG 60.541 57.143 0.00 0.00 0.00 3.53
3413 3734 1.540797 GGCTCTGATGCTCTGCTTAGG 60.541 57.143 0.00 0.00 0.00 2.69
3414 3735 1.868469 GGCTCTGATGCTCTGCTTAG 58.132 55.000 0.00 0.00 0.00 2.18
3415 3736 0.103755 CGGCTCTGATGCTCTGCTTA 59.896 55.000 0.00 0.00 0.00 3.09
3416 3737 1.153409 CGGCTCTGATGCTCTGCTT 60.153 57.895 0.00 0.00 0.00 3.91
3417 3738 2.500165 CGGCTCTGATGCTCTGCT 59.500 61.111 0.00 0.00 0.00 4.24
3418 3739 3.270839 GCGGCTCTGATGCTCTGC 61.271 66.667 0.00 0.00 0.00 4.26
3419 3740 2.960659 CGCGGCTCTGATGCTCTG 60.961 66.667 0.00 0.00 0.00 3.35
3420 3741 3.423162 GACGCGGCTCTGATGCTCT 62.423 63.158 12.47 0.00 0.00 4.09
3421 3742 2.959071 GACGCGGCTCTGATGCTC 60.959 66.667 12.47 0.00 0.00 4.26
3422 3743 3.423162 GAGACGCGGCTCTGATGCT 62.423 63.158 34.41 0.00 32.16 3.79
3423 3744 2.959071 GAGACGCGGCTCTGATGC 60.959 66.667 34.41 7.66 32.16 3.91
3424 3745 2.653448 CGAGACGCGGCTCTGATG 60.653 66.667 37.00 19.72 36.03 3.07
3425 3746 2.824489 TCGAGACGCGGCTCTGAT 60.824 61.111 37.00 5.08 41.33 2.90
3426 3747 3.800863 GTCGAGACGCGGCTCTGA 61.801 66.667 37.00 30.67 42.46 3.27
3427 3748 4.838486 GGTCGAGACGCGGCTCTG 62.838 72.222 37.00 29.07 45.74 3.35
3429 3750 2.332362 TATTGGTCGAGACGCGGCTC 62.332 60.000 32.29 32.29 45.74 4.70
3430 3751 2.412323 TATTGGTCGAGACGCGGCT 61.412 57.895 18.34 18.34 45.74 5.52
3431 3752 2.103538 TATTGGTCGAGACGCGGC 59.896 61.111 12.47 7.86 45.73 6.53
3432 3753 1.588139 GGTATTGGTCGAGACGCGG 60.588 63.158 12.47 0.00 41.33 6.46
3433 3754 1.937846 CGGTATTGGTCGAGACGCG 60.938 63.158 3.53 3.53 42.69 6.01
3434 3755 0.030369 ATCGGTATTGGTCGAGACGC 59.970 55.000 0.00 0.00 38.83 5.19
3435 3756 1.332686 TGATCGGTATTGGTCGAGACG 59.667 52.381 0.00 0.00 38.83 4.18
3436 3757 2.543238 GGTGATCGGTATTGGTCGAGAC 60.543 54.545 0.00 0.00 38.83 3.36
3437 3758 1.679680 GGTGATCGGTATTGGTCGAGA 59.320 52.381 0.00 0.00 38.83 4.04
3438 3759 1.681793 AGGTGATCGGTATTGGTCGAG 59.318 52.381 0.00 0.00 38.83 4.04
3439 3760 1.679680 GAGGTGATCGGTATTGGTCGA 59.320 52.381 0.00 0.00 39.79 4.20
3440 3761 2.135664 GAGGTGATCGGTATTGGTCG 57.864 55.000 0.00 0.00 0.00 4.79
3451 3772 2.370281 TGTTGCTCTTCGAGGTGATC 57.630 50.000 0.26 0.00 0.00 2.92
3452 3773 2.037772 AGTTGTTGCTCTTCGAGGTGAT 59.962 45.455 0.26 0.00 0.00 3.06
3453 3774 1.412710 AGTTGTTGCTCTTCGAGGTGA 59.587 47.619 0.26 0.00 0.00 4.02
3454 3775 1.871080 AGTTGTTGCTCTTCGAGGTG 58.129 50.000 0.00 0.00 0.00 4.00
3455 3776 2.158957 TGAAGTTGTTGCTCTTCGAGGT 60.159 45.455 0.00 0.00 41.77 3.85
3456 3777 2.478134 CTGAAGTTGTTGCTCTTCGAGG 59.522 50.000 0.00 0.00 41.77 4.63
3457 3778 2.096516 GCTGAAGTTGTTGCTCTTCGAG 60.097 50.000 0.00 0.00 41.77 4.04
3458 3779 1.867233 GCTGAAGTTGTTGCTCTTCGA 59.133 47.619 0.00 0.00 41.77 3.71
3459 3780 1.069636 GGCTGAAGTTGTTGCTCTTCG 60.070 52.381 0.00 0.00 41.77 3.79
3460 3781 1.069636 CGGCTGAAGTTGTTGCTCTTC 60.070 52.381 0.00 0.00 40.02 2.87
3461 3782 0.947244 CGGCTGAAGTTGTTGCTCTT 59.053 50.000 0.00 0.00 0.00 2.85
3462 3783 0.886490 CCGGCTGAAGTTGTTGCTCT 60.886 55.000 0.00 0.00 0.00 4.09
3463 3784 0.884704 TCCGGCTGAAGTTGTTGCTC 60.885 55.000 0.00 0.00 0.00 4.26
3464 3785 1.148273 TCCGGCTGAAGTTGTTGCT 59.852 52.632 0.00 0.00 0.00 3.91
3465 3786 1.282875 GTCCGGCTGAAGTTGTTGC 59.717 57.895 0.00 0.00 0.00 4.17
3466 3787 1.197721 GATGTCCGGCTGAAGTTGTTG 59.802 52.381 0.00 0.00 0.00 3.33
3467 3788 1.523758 GATGTCCGGCTGAAGTTGTT 58.476 50.000 0.00 0.00 0.00 2.83
3468 3789 0.321653 GGATGTCCGGCTGAAGTTGT 60.322 55.000 0.00 0.00 0.00 3.32
3469 3790 1.026718 GGGATGTCCGGCTGAAGTTG 61.027 60.000 0.00 0.00 36.71 3.16
3470 3791 1.201429 AGGGATGTCCGGCTGAAGTT 61.201 55.000 0.00 0.00 41.52 2.66
3471 3792 1.201429 AAGGGATGTCCGGCTGAAGT 61.201 55.000 0.00 0.00 41.52 3.01
3472 3793 0.745845 CAAGGGATGTCCGGCTGAAG 60.746 60.000 0.00 0.00 41.52 3.02
3473 3794 1.299648 CAAGGGATGTCCGGCTGAA 59.700 57.895 0.00 0.00 41.52 3.02
3474 3795 1.918293 ACAAGGGATGTCCGGCTGA 60.918 57.895 0.00 0.00 37.96 4.26
3475 3796 2.671070 ACAAGGGATGTCCGGCTG 59.329 61.111 0.00 0.00 37.96 4.85
3483 3804 2.100631 GGTGCGTCGACAAGGGATG 61.101 63.158 17.16 0.00 0.00 3.51
3484 3805 1.899437 ATGGTGCGTCGACAAGGGAT 61.899 55.000 17.16 0.00 0.00 3.85
3485 3806 2.501223 GATGGTGCGTCGACAAGGGA 62.501 60.000 17.16 0.00 0.00 4.20
3486 3807 2.047274 ATGGTGCGTCGACAAGGG 60.047 61.111 17.16 0.00 0.00 3.95
3487 3808 2.100631 GGATGGTGCGTCGACAAGG 61.101 63.158 17.16 0.00 0.00 3.61
3488 3809 1.374125 TGGATGGTGCGTCGACAAG 60.374 57.895 17.16 0.67 0.00 3.16
3489 3810 1.666553 GTGGATGGTGCGTCGACAA 60.667 57.895 17.16 0.00 30.38 3.18
3490 3811 2.048597 GTGGATGGTGCGTCGACA 60.049 61.111 17.16 0.00 30.38 4.35
3491 3812 2.813908 GGTGGATGGTGCGTCGAC 60.814 66.667 5.18 5.18 0.00 4.20
3492 3813 4.077184 GGGTGGATGGTGCGTCGA 62.077 66.667 0.00 0.00 0.00 4.20
3493 3814 3.605749 AAGGGTGGATGGTGCGTCG 62.606 63.158 0.00 0.00 0.00 5.12
3494 3815 2.040544 CAAGGGTGGATGGTGCGTC 61.041 63.158 0.00 0.00 0.00 5.19
3495 3816 2.034066 CAAGGGTGGATGGTGCGT 59.966 61.111 0.00 0.00 0.00 5.24
3496 3817 0.680921 ATTCAAGGGTGGATGGTGCG 60.681 55.000 0.00 0.00 0.00 5.34
3497 3818 0.819582 CATTCAAGGGTGGATGGTGC 59.180 55.000 0.00 0.00 37.12 5.01
3498 3819 0.819582 GCATTCAAGGGTGGATGGTG 59.180 55.000 0.00 0.00 40.68 4.17
3499 3820 0.324645 GGCATTCAAGGGTGGATGGT 60.325 55.000 0.00 0.00 40.68 3.55
3500 3821 1.386525 CGGCATTCAAGGGTGGATGG 61.387 60.000 0.00 0.00 40.68 3.51
3501 3822 0.394216 TCGGCATTCAAGGGTGGATG 60.394 55.000 0.00 0.00 42.95 3.51
3502 3823 0.331278 TTCGGCATTCAAGGGTGGAT 59.669 50.000 0.00 0.00 0.00 3.41
3503 3824 0.111446 TTTCGGCATTCAAGGGTGGA 59.889 50.000 0.00 0.00 0.00 4.02
3504 3825 0.965439 TTTTCGGCATTCAAGGGTGG 59.035 50.000 0.00 0.00 0.00 4.61
3505 3826 2.810439 TTTTTCGGCATTCAAGGGTG 57.190 45.000 0.00 0.00 0.00 4.61
3521 3842 1.073923 ACCCACTCGCCATCTCTTTTT 59.926 47.619 0.00 0.00 0.00 1.94
3522 3843 0.693049 ACCCACTCGCCATCTCTTTT 59.307 50.000 0.00 0.00 0.00 2.27
3523 3844 0.036010 CACCCACTCGCCATCTCTTT 60.036 55.000 0.00 0.00 0.00 2.52
3524 3845 1.599047 CACCCACTCGCCATCTCTT 59.401 57.895 0.00 0.00 0.00 2.85
3525 3846 2.362369 CCACCCACTCGCCATCTCT 61.362 63.158 0.00 0.00 0.00 3.10
3526 3847 2.187946 CCACCCACTCGCCATCTC 59.812 66.667 0.00 0.00 0.00 2.75
3527 3848 4.101448 GCCACCCACTCGCCATCT 62.101 66.667 0.00 0.00 0.00 2.90
3534 3855 4.083862 GAGTCCCGCCACCCACTC 62.084 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.