Multiple sequence alignment - TraesCS1A01G183000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G183000 chr1A 100.000 7023 0 0 1 7023 331324288 331317266 0.000000e+00 12970.0
1 TraesCS1A01G183000 chr1D 93.625 6384 203 59 752 7023 257415090 257408799 0.000000e+00 9347.0
2 TraesCS1A01G183000 chr1D 86.667 240 22 6 226 462 257436208 257435976 2.510000e-64 257.0
3 TraesCS1A01G183000 chr1D 95.385 65 3 0 686 750 257424251 257424187 3.470000e-18 104.0
4 TraesCS1A01G183000 chr1D 100.000 28 0 0 5706 5733 257410103 257410076 1.300000e-02 52.8
5 TraesCS1A01G183000 chr1B 90.705 3690 211 59 533 4146 355679171 355675538 0.000000e+00 4793.0
6 TraesCS1A01G183000 chr1B 91.409 2293 136 34 4256 6508 355675500 355673229 0.000000e+00 3086.0
7 TraesCS1A01G183000 chr1B 84.498 458 67 4 6569 7023 355673218 355672762 3.860000e-122 449.0
8 TraesCS1A01G183000 chr3A 85.946 185 23 2 6692 6873 737517900 737517716 2.000000e-45 195.0
9 TraesCS1A01G183000 chr2D 85.106 188 24 3 6692 6877 579754541 579754356 9.300000e-44 189.0
10 TraesCS1A01G183000 chr5D 85.635 181 23 2 6692 6869 552044583 552044763 3.340000e-43 187.0
11 TraesCS1A01G183000 chr5D 84.293 191 25 4 6692 6879 535902020 535902208 1.560000e-41 182.0
12 TraesCS1A01G183000 chr5B 85.635 181 23 2 6692 6869 711257938 711258118 3.340000e-43 187.0
13 TraesCS1A01G183000 chr5A 85.714 182 21 4 6692 6869 470179053 470179233 3.340000e-43 187.0
14 TraesCS1A01G183000 chr7B 87.821 156 19 0 6718 6873 96414428 96414273 4.330000e-42 183.0
15 TraesCS1A01G183000 chr2B 79.275 193 33 6 2591 2778 109297635 109297445 2.060000e-25 128.0
16 TraesCS1A01G183000 chr2B 84.821 112 16 1 2672 2783 34146413 34146303 2.070000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G183000 chr1A 331317266 331324288 7022 True 12970 12970 100.000000 1 7023 1 chr1A.!!$R1 7022
1 TraesCS1A01G183000 chr1D 257408799 257415090 6291 True 9347 9347 93.625000 752 7023 1 chr1D.!!$R1 6271
2 TraesCS1A01G183000 chr1B 355672762 355679171 6409 True 2776 4793 88.870667 533 7023 3 chr1B.!!$R1 6490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.039618 AGTGGGATTGGCGGACATTT 59.960 50.000 0.00 0.0 0.00 2.32 F
734 735 0.246360 TCACCACTGACCAGCGTATG 59.754 55.000 0.00 0.0 0.00 2.39 F
1838 1871 1.409661 GCCCCTCCATTATTGGTCGTT 60.410 52.381 3.65 0.0 44.06 3.85 F
2167 2231 1.227999 TTGCAGTAGCTGGTTCGTGC 61.228 55.000 0.00 0.0 42.74 5.34 F
3124 3224 1.254954 AAGTGACAGTCTACCCGGTC 58.745 55.000 0.00 0.0 0.00 4.79 F
4316 4457 0.392461 GGACATAGCGGTCTTTGCCA 60.392 55.000 0.00 0.0 37.91 4.92 F
4721 4864 1.065854 GCAGTGACAGCCAGGAAGTAT 60.066 52.381 0.00 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2048 0.037590 AAAATCAGCCGCCCACAGTA 59.962 50.000 0.00 0.00 0.00 2.74 R
1998 2049 0.827507 AAAAATCAGCCGCCCACAGT 60.828 50.000 0.00 0.00 0.00 3.55 R
3367 3470 0.975040 AAAGTGGTGGTTGGCTGCAA 60.975 50.000 0.50 0.00 0.00 4.08 R
3837 3943 1.740025 GCTGAAGCAATCTGGTGGTAC 59.260 52.381 0.00 0.00 41.59 3.34 R
4900 5044 0.678048 GGACAGACCAACCCTGATGC 60.678 60.000 0.00 0.00 38.79 3.91 R
5875 6022 0.526954 ACAGTTCGCCGGCTATAACG 60.527 55.000 26.68 20.55 0.00 3.18 R
6710 6898 0.830648 CACCTTTATCGCCTCCCTCA 59.169 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.813080 ATGGACGTCCTTGCTTTATTTAC 57.187 39.130 33.39 3.99 36.82 2.01
25 26 4.643463 TGGACGTCCTTGCTTTATTTACA 58.357 39.130 33.39 6.77 36.82 2.41
26 27 5.250200 TGGACGTCCTTGCTTTATTTACAT 58.750 37.500 33.39 0.00 36.82 2.29
27 28 5.708230 TGGACGTCCTTGCTTTATTTACATT 59.292 36.000 33.39 0.00 36.82 2.71
28 29 6.027749 GGACGTCCTTGCTTTATTTACATTG 58.972 40.000 27.64 0.00 0.00 2.82
29 30 5.949735 ACGTCCTTGCTTTATTTACATTGG 58.050 37.500 0.00 0.00 0.00 3.16
30 31 5.708230 ACGTCCTTGCTTTATTTACATTGGA 59.292 36.000 0.00 0.00 0.00 3.53
31 32 6.128007 ACGTCCTTGCTTTATTTACATTGGAG 60.128 38.462 0.00 0.00 0.00 3.86
32 33 6.036470 GTCCTTGCTTTATTTACATTGGAGC 58.964 40.000 0.00 0.00 0.00 4.70
33 34 5.036737 CCTTGCTTTATTTACATTGGAGCG 58.963 41.667 0.00 0.00 0.00 5.03
34 35 4.027572 TGCTTTATTTACATTGGAGCGC 57.972 40.909 0.00 0.00 0.00 5.92
35 36 3.441922 TGCTTTATTTACATTGGAGCGCA 59.558 39.130 11.47 0.00 0.00 6.09
36 37 4.082517 TGCTTTATTTACATTGGAGCGCAA 60.083 37.500 11.47 0.00 0.00 4.85
37 38 4.862018 GCTTTATTTACATTGGAGCGCAAA 59.138 37.500 11.47 0.49 0.00 3.68
38 39 5.347364 GCTTTATTTACATTGGAGCGCAAAA 59.653 36.000 11.47 0.06 0.00 2.44
39 40 6.035975 GCTTTATTTACATTGGAGCGCAAAAT 59.964 34.615 11.47 2.95 0.00 1.82
40 41 7.221838 GCTTTATTTACATTGGAGCGCAAAATA 59.778 33.333 11.47 4.00 0.00 1.40
41 42 8.627487 TTTATTTACATTGGAGCGCAAAATAG 57.373 30.769 11.47 0.00 0.00 1.73
42 43 5.637006 TTTACATTGGAGCGCAAAATAGT 57.363 34.783 11.47 3.79 0.00 2.12
43 44 3.492421 ACATTGGAGCGCAAAATAGTG 57.508 42.857 11.47 1.72 0.00 2.74
44 45 2.164219 ACATTGGAGCGCAAAATAGTGG 59.836 45.455 11.47 0.00 0.00 4.00
45 46 1.173043 TTGGAGCGCAAAATAGTGGG 58.827 50.000 11.47 0.00 34.70 4.61
46 47 0.326595 TGGAGCGCAAAATAGTGGGA 59.673 50.000 11.47 0.00 33.45 4.37
47 48 1.064758 TGGAGCGCAAAATAGTGGGAT 60.065 47.619 11.47 0.00 33.45 3.85
48 49 2.024414 GGAGCGCAAAATAGTGGGATT 58.976 47.619 11.47 0.00 33.45 3.01
49 50 2.223572 GGAGCGCAAAATAGTGGGATTG 60.224 50.000 11.47 0.00 33.45 2.67
50 51 1.750778 AGCGCAAAATAGTGGGATTGG 59.249 47.619 11.47 0.00 33.45 3.16
51 52 1.802508 GCGCAAAATAGTGGGATTGGC 60.803 52.381 0.30 0.00 33.45 4.52
52 53 1.533756 CGCAAAATAGTGGGATTGGCG 60.534 52.381 0.00 0.00 37.20 5.69
53 54 1.202405 GCAAAATAGTGGGATTGGCGG 60.202 52.381 0.00 0.00 0.00 6.13
54 55 2.374184 CAAAATAGTGGGATTGGCGGA 58.626 47.619 0.00 0.00 0.00 5.54
55 56 2.052782 AAATAGTGGGATTGGCGGAC 57.947 50.000 0.00 0.00 0.00 4.79
56 57 0.916086 AATAGTGGGATTGGCGGACA 59.084 50.000 0.00 0.00 0.00 4.02
57 58 1.140312 ATAGTGGGATTGGCGGACAT 58.860 50.000 0.00 0.00 0.00 3.06
58 59 0.916086 TAGTGGGATTGGCGGACATT 59.084 50.000 0.00 0.00 0.00 2.71
59 60 0.039618 AGTGGGATTGGCGGACATTT 59.960 50.000 0.00 0.00 0.00 2.32
60 61 0.894835 GTGGGATTGGCGGACATTTT 59.105 50.000 0.00 0.00 0.00 1.82
61 62 1.135112 GTGGGATTGGCGGACATTTTC 60.135 52.381 0.00 0.00 0.00 2.29
62 63 0.459899 GGGATTGGCGGACATTTTCC 59.540 55.000 0.00 0.00 41.75 3.13
63 64 1.181786 GGATTGGCGGACATTTTCCA 58.818 50.000 3.78 0.00 46.29 3.53
64 65 1.756538 GGATTGGCGGACATTTTCCAT 59.243 47.619 3.78 0.00 46.29 3.41
65 66 2.481795 GGATTGGCGGACATTTTCCATG 60.482 50.000 3.78 0.00 46.29 3.66
66 67 1.626686 TTGGCGGACATTTTCCATGT 58.373 45.000 0.00 0.00 46.29 3.21
67 68 2.498644 TGGCGGACATTTTCCATGTA 57.501 45.000 0.00 0.00 46.29 2.29
68 69 2.364632 TGGCGGACATTTTCCATGTAG 58.635 47.619 0.00 0.00 46.29 2.74
69 70 2.026729 TGGCGGACATTTTCCATGTAGA 60.027 45.455 0.00 0.00 46.29 2.59
70 71 3.013921 GGCGGACATTTTCCATGTAGAA 58.986 45.455 0.00 0.00 46.29 2.10
71 72 3.632145 GGCGGACATTTTCCATGTAGAAT 59.368 43.478 0.00 0.00 46.29 2.40
72 73 4.097892 GGCGGACATTTTCCATGTAGAATT 59.902 41.667 0.00 0.00 46.29 2.17
73 74 5.394115 GGCGGACATTTTCCATGTAGAATTT 60.394 40.000 0.00 0.00 46.29 1.82
74 75 5.743872 GCGGACATTTTCCATGTAGAATTTC 59.256 40.000 0.00 0.00 46.29 2.17
75 76 6.404734 GCGGACATTTTCCATGTAGAATTTCT 60.405 38.462 4.03 4.03 46.29 2.52
76 77 7.538575 CGGACATTTTCCATGTAGAATTTCTT 58.461 34.615 3.86 0.00 46.29 2.52
77 78 8.028938 CGGACATTTTCCATGTAGAATTTCTTT 58.971 33.333 3.86 0.00 46.29 2.52
78 79 9.710900 GGACATTTTCCATGTAGAATTTCTTTT 57.289 29.630 3.86 0.00 45.10 2.27
81 82 9.815936 CATTTTCCATGTAGAATTTCTTTTTGC 57.184 29.630 3.86 0.00 0.00 3.68
82 83 8.954950 TTTTCCATGTAGAATTTCTTTTTGCA 57.045 26.923 3.86 0.00 0.00 4.08
83 84 8.954950 TTTCCATGTAGAATTTCTTTTTGCAA 57.045 26.923 3.86 0.00 0.00 4.08
84 85 8.592105 TTCCATGTAGAATTTCTTTTTGCAAG 57.408 30.769 3.86 0.00 0.00 4.01
85 86 6.646240 TCCATGTAGAATTTCTTTTTGCAAGC 59.354 34.615 3.86 0.00 0.00 4.01
86 87 6.128472 CCATGTAGAATTTCTTTTTGCAAGCC 60.128 38.462 3.86 0.00 0.00 4.35
87 88 6.160576 TGTAGAATTTCTTTTTGCAAGCCT 57.839 33.333 3.86 0.00 0.00 4.58
88 89 6.581712 TGTAGAATTTCTTTTTGCAAGCCTT 58.418 32.000 3.86 0.00 0.00 4.35
89 90 7.047271 TGTAGAATTTCTTTTTGCAAGCCTTT 58.953 30.769 3.86 0.00 0.00 3.11
90 91 6.609237 AGAATTTCTTTTTGCAAGCCTTTC 57.391 33.333 0.00 0.00 0.00 2.62
91 92 6.351711 AGAATTTCTTTTTGCAAGCCTTTCT 58.648 32.000 0.00 1.30 0.00 2.52
92 93 6.481313 AGAATTTCTTTTTGCAAGCCTTTCTC 59.519 34.615 0.00 0.00 0.00 2.87
93 94 4.734398 TTCTTTTTGCAAGCCTTTCTCA 57.266 36.364 0.00 0.00 0.00 3.27
94 95 4.942761 TCTTTTTGCAAGCCTTTCTCAT 57.057 36.364 0.00 0.00 0.00 2.90
95 96 4.874970 TCTTTTTGCAAGCCTTTCTCATC 58.125 39.130 0.00 0.00 0.00 2.92
96 97 3.665745 TTTTGCAAGCCTTTCTCATCC 57.334 42.857 0.00 0.00 0.00 3.51
97 98 1.167851 TTGCAAGCCTTTCTCATCCG 58.832 50.000 0.00 0.00 0.00 4.18
98 99 0.677731 TGCAAGCCTTTCTCATCCGG 60.678 55.000 0.00 0.00 0.00 5.14
99 100 0.392998 GCAAGCCTTTCTCATCCGGA 60.393 55.000 6.61 6.61 0.00 5.14
100 101 1.950484 GCAAGCCTTTCTCATCCGGAA 60.950 52.381 9.01 0.00 0.00 4.30
101 102 2.648059 CAAGCCTTTCTCATCCGGAAT 58.352 47.619 9.01 0.00 0.00 3.01
102 103 2.615912 CAAGCCTTTCTCATCCGGAATC 59.384 50.000 9.01 0.00 0.00 2.52
103 104 1.839994 AGCCTTTCTCATCCGGAATCA 59.160 47.619 9.01 0.00 0.00 2.57
104 105 2.239654 AGCCTTTCTCATCCGGAATCAA 59.760 45.455 9.01 0.00 0.00 2.57
105 106 3.117738 AGCCTTTCTCATCCGGAATCAAT 60.118 43.478 9.01 0.00 0.00 2.57
106 107 3.251972 GCCTTTCTCATCCGGAATCAATC 59.748 47.826 9.01 0.00 0.00 2.67
107 108 4.454678 CCTTTCTCATCCGGAATCAATCA 58.545 43.478 9.01 0.00 0.00 2.57
108 109 4.274459 CCTTTCTCATCCGGAATCAATCAC 59.726 45.833 9.01 0.00 0.00 3.06
109 110 3.097877 TCTCATCCGGAATCAATCACG 57.902 47.619 9.01 0.00 0.00 4.35
110 111 2.138320 CTCATCCGGAATCAATCACGG 58.862 52.381 9.01 0.00 40.88 4.94
111 112 1.202639 TCATCCGGAATCAATCACGGG 60.203 52.381 9.01 0.00 40.31 5.28
112 113 0.837272 ATCCGGAATCAATCACGGGT 59.163 50.000 9.01 0.00 40.31 5.28
113 114 0.616371 TCCGGAATCAATCACGGGTT 59.384 50.000 0.00 0.00 40.31 4.11
114 115 1.014352 CCGGAATCAATCACGGGTTC 58.986 55.000 0.00 0.00 37.88 3.62
115 116 1.014352 CGGAATCAATCACGGGTTCC 58.986 55.000 0.00 0.00 35.98 3.62
116 117 1.389555 GGAATCAATCACGGGTTCCC 58.610 55.000 0.00 0.00 33.80 3.97
149 150 7.812690 AAAGGAATCAATTACGGGTATTACC 57.187 36.000 4.11 4.11 37.60 2.85
160 161 2.924757 GGTATTACCCGAGGGAAAGG 57.075 55.000 16.26 0.00 38.96 3.11
161 162 2.401568 GGTATTACCCGAGGGAAAGGA 58.598 52.381 16.26 0.00 38.96 3.36
162 163 2.773661 GGTATTACCCGAGGGAAAGGAA 59.226 50.000 16.26 1.41 38.96 3.36
163 164 3.200605 GGTATTACCCGAGGGAAAGGAAA 59.799 47.826 16.26 0.00 38.96 3.13
164 165 4.324486 GGTATTACCCGAGGGAAAGGAAAA 60.324 45.833 16.26 0.00 38.96 2.29
165 166 3.880168 TTACCCGAGGGAAAGGAAAAA 57.120 42.857 16.26 0.00 38.96 1.94
166 167 2.992847 ACCCGAGGGAAAGGAAAAAT 57.007 45.000 16.26 0.00 38.96 1.82
167 168 5.517620 TTACCCGAGGGAAAGGAAAAATA 57.482 39.130 16.26 0.00 38.96 1.40
168 169 3.693807 ACCCGAGGGAAAGGAAAAATAC 58.306 45.455 16.26 0.00 38.96 1.89
169 170 3.074836 ACCCGAGGGAAAGGAAAAATACA 59.925 43.478 16.26 0.00 38.96 2.29
170 171 4.083565 CCCGAGGGAAAGGAAAAATACAA 58.916 43.478 0.84 0.00 37.50 2.41
171 172 4.525100 CCCGAGGGAAAGGAAAAATACAAA 59.475 41.667 0.84 0.00 37.50 2.83
172 173 5.011227 CCCGAGGGAAAGGAAAAATACAAAA 59.989 40.000 0.84 0.00 37.50 2.44
173 174 6.463190 CCCGAGGGAAAGGAAAAATACAAAAA 60.463 38.462 0.84 0.00 37.50 1.94
174 175 7.158697 CCGAGGGAAAGGAAAAATACAAAAAT 58.841 34.615 0.00 0.00 0.00 1.82
175 176 8.308207 CCGAGGGAAAGGAAAAATACAAAAATA 58.692 33.333 0.00 0.00 0.00 1.40
176 177 9.353999 CGAGGGAAAGGAAAAATACAAAAATAG 57.646 33.333 0.00 0.00 0.00 1.73
177 178 9.653287 GAGGGAAAGGAAAAATACAAAAATAGG 57.347 33.333 0.00 0.00 0.00 2.57
178 179 8.602424 AGGGAAAGGAAAAATACAAAAATAGGG 58.398 33.333 0.00 0.00 0.00 3.53
179 180 7.827236 GGGAAAGGAAAAATACAAAAATAGGGG 59.173 37.037 0.00 0.00 0.00 4.79
180 181 7.827236 GGAAAGGAAAAATACAAAAATAGGGGG 59.173 37.037 0.00 0.00 0.00 5.40
181 182 7.881912 AAGGAAAAATACAAAAATAGGGGGT 57.118 32.000 0.00 0.00 0.00 4.95
182 183 7.490657 AGGAAAAATACAAAAATAGGGGGTC 57.509 36.000 0.00 0.00 0.00 4.46
183 184 7.020009 AGGAAAAATACAAAAATAGGGGGTCA 58.980 34.615 0.00 0.00 0.00 4.02
184 185 7.682459 AGGAAAAATACAAAAATAGGGGGTCAT 59.318 33.333 0.00 0.00 0.00 3.06
185 186 8.325787 GGAAAAATACAAAAATAGGGGGTCATT 58.674 33.333 0.00 0.00 0.00 2.57
186 187 9.161629 GAAAAATACAAAAATAGGGGGTCATTG 57.838 33.333 0.00 0.00 0.00 2.82
187 188 5.869649 ATACAAAAATAGGGGGTCATTGC 57.130 39.130 0.00 0.00 0.00 3.56
188 189 2.837591 ACAAAAATAGGGGGTCATTGCC 59.162 45.455 0.00 0.00 0.00 4.52
189 190 1.775385 AAAATAGGGGGTCATTGCCG 58.225 50.000 0.00 0.00 0.00 5.69
190 191 0.629058 AAATAGGGGGTCATTGCCGT 59.371 50.000 0.00 0.00 0.00 5.68
191 192 0.629058 AATAGGGGGTCATTGCCGTT 59.371 50.000 0.00 0.00 0.00 4.44
192 193 0.629058 ATAGGGGGTCATTGCCGTTT 59.371 50.000 0.00 0.00 0.00 3.60
193 194 0.406361 TAGGGGGTCATTGCCGTTTT 59.594 50.000 0.00 0.00 0.00 2.43
194 195 0.471022 AGGGGGTCATTGCCGTTTTT 60.471 50.000 0.00 0.00 0.00 1.94
214 215 3.641437 TTGGCCAGAAAAGAAATGACG 57.359 42.857 5.11 0.00 0.00 4.35
215 216 1.885887 TGGCCAGAAAAGAAATGACGG 59.114 47.619 0.00 0.00 0.00 4.79
216 217 2.159382 GGCCAGAAAAGAAATGACGGA 58.841 47.619 0.00 0.00 0.00 4.69
217 218 2.162408 GGCCAGAAAAGAAATGACGGAG 59.838 50.000 0.00 0.00 0.00 4.63
218 219 3.074412 GCCAGAAAAGAAATGACGGAGA 58.926 45.455 0.00 0.00 0.00 3.71
219 220 3.502211 GCCAGAAAAGAAATGACGGAGAA 59.498 43.478 0.00 0.00 0.00 2.87
220 221 4.378874 GCCAGAAAAGAAATGACGGAGAAG 60.379 45.833 0.00 0.00 0.00 2.85
221 222 4.154918 CCAGAAAAGAAATGACGGAGAAGG 59.845 45.833 0.00 0.00 0.00 3.46
222 223 4.154918 CAGAAAAGAAATGACGGAGAAGGG 59.845 45.833 0.00 0.00 0.00 3.95
223 224 4.041691 AGAAAAGAAATGACGGAGAAGGGA 59.958 41.667 0.00 0.00 0.00 4.20
224 225 4.367039 AAAGAAATGACGGAGAAGGGAA 57.633 40.909 0.00 0.00 0.00 3.97
225 226 3.618690 AGAAATGACGGAGAAGGGAAG 57.381 47.619 0.00 0.00 0.00 3.46
226 227 2.010497 GAAATGACGGAGAAGGGAAGC 58.990 52.381 0.00 0.00 0.00 3.86
227 228 0.984230 AATGACGGAGAAGGGAAGCA 59.016 50.000 0.00 0.00 0.00 3.91
228 229 0.984230 ATGACGGAGAAGGGAAGCAA 59.016 50.000 0.00 0.00 0.00 3.91
229 230 0.321671 TGACGGAGAAGGGAAGCAAG 59.678 55.000 0.00 0.00 0.00 4.01
230 231 1.003233 ACGGAGAAGGGAAGCAAGC 60.003 57.895 0.00 0.00 0.00 4.01
231 232 1.746991 CGGAGAAGGGAAGCAAGCC 60.747 63.158 0.00 0.00 0.00 4.35
232 233 1.379176 GGAGAAGGGAAGCAAGCCC 60.379 63.158 0.00 0.00 46.40 5.19
239 240 4.035102 GAAGCAAGCCCCGTCCCT 62.035 66.667 0.00 0.00 0.00 4.20
240 241 2.609610 AAGCAAGCCCCGTCCCTA 60.610 61.111 0.00 0.00 0.00 3.53
241 242 2.193087 GAAGCAAGCCCCGTCCCTAA 62.193 60.000 0.00 0.00 0.00 2.69
242 243 1.785353 AAGCAAGCCCCGTCCCTAAA 61.785 55.000 0.00 0.00 0.00 1.85
243 244 1.303806 GCAAGCCCCGTCCCTAAAA 60.304 57.895 0.00 0.00 0.00 1.52
244 245 0.896479 GCAAGCCCCGTCCCTAAAAA 60.896 55.000 0.00 0.00 0.00 1.94
273 274 9.617523 ACCATGGATAAAAATCATGAAAAATCC 57.382 29.630 21.47 8.93 40.28 3.01
274 275 9.841295 CCATGGATAAAAATCATGAAAAATCCT 57.159 29.630 5.56 8.45 40.28 3.24
277 278 9.044646 TGGATAAAAATCATGAAAAATCCTCCA 57.955 29.630 18.73 14.29 34.14 3.86
278 279 9.889128 GGATAAAAATCATGAAAAATCCTCCAA 57.111 29.630 0.00 0.00 31.05 3.53
282 283 9.631257 AAAAATCATGAAAAATCCTCCAAAAGT 57.369 25.926 0.00 0.00 0.00 2.66
284 285 9.710900 AAATCATGAAAAATCCTCCAAAAGTAC 57.289 29.630 0.00 0.00 0.00 2.73
285 286 8.655935 ATCATGAAAAATCCTCCAAAAGTACT 57.344 30.769 0.00 0.00 0.00 2.73
286 287 8.110860 TCATGAAAAATCCTCCAAAAGTACTC 57.889 34.615 0.00 0.00 0.00 2.59
287 288 6.894339 TGAAAAATCCTCCAAAAGTACTCC 57.106 37.500 0.00 0.00 0.00 3.85
288 289 6.369629 TGAAAAATCCTCCAAAAGTACTCCA 58.630 36.000 0.00 0.00 0.00 3.86
289 290 6.836527 TGAAAAATCCTCCAAAAGTACTCCAA 59.163 34.615 0.00 0.00 0.00 3.53
290 291 7.343316 TGAAAAATCCTCCAAAAGTACTCCAAA 59.657 33.333 0.00 0.00 0.00 3.28
291 292 6.650427 AAATCCTCCAAAAGTACTCCAAAC 57.350 37.500 0.00 0.00 0.00 2.93
292 293 3.735591 TCCTCCAAAAGTACTCCAAACG 58.264 45.455 0.00 0.00 0.00 3.60
293 294 2.812011 CCTCCAAAAGTACTCCAAACGG 59.188 50.000 0.00 0.00 0.00 4.44
294 295 3.495453 CCTCCAAAAGTACTCCAAACGGA 60.495 47.826 0.00 0.00 0.00 4.69
295 296 4.131596 CTCCAAAAGTACTCCAAACGGAA 58.868 43.478 0.00 0.00 30.08 4.30
296 297 4.721132 TCCAAAAGTACTCCAAACGGAAT 58.279 39.130 0.00 0.00 30.08 3.01
297 298 4.517453 TCCAAAAGTACTCCAAACGGAATG 59.483 41.667 0.00 0.00 30.08 2.67
298 299 4.517453 CCAAAAGTACTCCAAACGGAATGA 59.483 41.667 0.00 0.00 30.08 2.57
299 300 5.334879 CCAAAAGTACTCCAAACGGAATGAG 60.335 44.000 0.00 0.00 30.08 2.90
300 301 2.973945 AGTACTCCAAACGGAATGAGC 58.026 47.619 0.00 0.00 30.08 4.26
301 302 2.301870 AGTACTCCAAACGGAATGAGCA 59.698 45.455 0.00 0.00 30.08 4.26
302 303 1.523758 ACTCCAAACGGAATGAGCAC 58.476 50.000 0.00 0.00 30.08 4.40
303 304 1.072331 ACTCCAAACGGAATGAGCACT 59.928 47.619 0.00 0.00 30.08 4.40
304 305 1.466167 CTCCAAACGGAATGAGCACTG 59.534 52.381 0.00 0.00 30.08 3.66
305 306 1.071542 TCCAAACGGAATGAGCACTGA 59.928 47.619 0.00 0.00 0.00 3.41
306 307 2.086869 CCAAACGGAATGAGCACTGAT 58.913 47.619 0.00 0.00 0.00 2.90
307 308 2.489329 CCAAACGGAATGAGCACTGATT 59.511 45.455 0.00 0.00 0.00 2.57
308 309 3.689161 CCAAACGGAATGAGCACTGATTA 59.311 43.478 0.00 0.00 0.00 1.75
309 310 4.336433 CCAAACGGAATGAGCACTGATTAT 59.664 41.667 0.00 0.00 0.00 1.28
310 311 5.527214 CCAAACGGAATGAGCACTGATTATA 59.473 40.000 0.00 0.00 0.00 0.98
311 312 6.293081 CCAAACGGAATGAGCACTGATTATAG 60.293 42.308 0.00 0.00 0.00 1.31
312 313 5.791336 ACGGAATGAGCACTGATTATAGA 57.209 39.130 0.00 0.00 0.00 1.98
313 314 6.161855 ACGGAATGAGCACTGATTATAGAA 57.838 37.500 0.00 0.00 0.00 2.10
314 315 6.582636 ACGGAATGAGCACTGATTATAGAAA 58.417 36.000 0.00 0.00 0.00 2.52
315 316 7.047891 ACGGAATGAGCACTGATTATAGAAAA 58.952 34.615 0.00 0.00 0.00 2.29
316 317 7.225538 ACGGAATGAGCACTGATTATAGAAAAG 59.774 37.037 0.00 0.00 0.00 2.27
317 318 7.358830 GGAATGAGCACTGATTATAGAAAAGC 58.641 38.462 0.00 0.00 0.00 3.51
318 319 7.228308 GGAATGAGCACTGATTATAGAAAAGCT 59.772 37.037 0.00 0.00 0.00 3.74
319 320 9.265901 GAATGAGCACTGATTATAGAAAAGCTA 57.734 33.333 0.00 0.00 0.00 3.32
320 321 9.618890 AATGAGCACTGATTATAGAAAAGCTAA 57.381 29.630 0.00 0.00 31.66 3.09
321 322 9.618890 ATGAGCACTGATTATAGAAAAGCTAAA 57.381 29.630 0.00 0.00 31.66 1.85
322 323 9.448438 TGAGCACTGATTATAGAAAAGCTAAAA 57.552 29.630 0.00 0.00 31.66 1.52
323 324 9.928236 GAGCACTGATTATAGAAAAGCTAAAAG 57.072 33.333 0.00 0.00 31.66 2.27
324 325 9.672673 AGCACTGATTATAGAAAAGCTAAAAGA 57.327 29.630 0.00 0.00 31.66 2.52
352 353 9.892130 ATAAGAAACCATACAAACTTAGGAGAG 57.108 33.333 0.00 0.00 0.00 3.20
353 354 6.174049 AGAAACCATACAAACTTAGGAGAGC 58.826 40.000 0.00 0.00 0.00 4.09
354 355 4.124851 ACCATACAAACTTAGGAGAGCG 57.875 45.455 0.00 0.00 0.00 5.03
355 356 3.514309 ACCATACAAACTTAGGAGAGCGT 59.486 43.478 0.00 0.00 0.00 5.07
356 357 4.113354 CCATACAAACTTAGGAGAGCGTC 58.887 47.826 0.00 0.00 0.00 5.19
357 358 4.142138 CCATACAAACTTAGGAGAGCGTCT 60.142 45.833 0.00 0.00 0.00 4.18
358 359 5.067413 CCATACAAACTTAGGAGAGCGTCTA 59.933 44.000 0.00 0.00 0.00 2.59
359 360 4.705337 ACAAACTTAGGAGAGCGTCTAG 57.295 45.455 0.00 0.00 0.00 2.43
360 361 4.080687 ACAAACTTAGGAGAGCGTCTAGT 58.919 43.478 0.00 0.00 0.00 2.57
361 362 5.251764 ACAAACTTAGGAGAGCGTCTAGTA 58.748 41.667 0.00 0.00 0.00 1.82
362 363 5.709164 ACAAACTTAGGAGAGCGTCTAGTAA 59.291 40.000 0.00 0.00 0.00 2.24
363 364 6.377712 ACAAACTTAGGAGAGCGTCTAGTAAT 59.622 38.462 0.00 0.00 0.00 1.89
364 365 7.093858 ACAAACTTAGGAGAGCGTCTAGTAATT 60.094 37.037 0.00 0.00 0.00 1.40
365 366 6.622833 ACTTAGGAGAGCGTCTAGTAATTC 57.377 41.667 0.00 0.00 0.00 2.17
366 367 6.120905 ACTTAGGAGAGCGTCTAGTAATTCA 58.879 40.000 0.00 0.00 0.00 2.57
367 368 6.773685 ACTTAGGAGAGCGTCTAGTAATTCAT 59.226 38.462 0.00 0.00 0.00 2.57
368 369 5.699097 AGGAGAGCGTCTAGTAATTCATC 57.301 43.478 0.00 0.00 0.00 2.92
369 370 5.381757 AGGAGAGCGTCTAGTAATTCATCT 58.618 41.667 0.00 0.00 0.00 2.90
370 371 5.830991 AGGAGAGCGTCTAGTAATTCATCTT 59.169 40.000 0.00 0.00 0.00 2.40
371 372 6.322712 AGGAGAGCGTCTAGTAATTCATCTTT 59.677 38.462 0.00 0.00 0.00 2.52
372 373 6.981559 GGAGAGCGTCTAGTAATTCATCTTTT 59.018 38.462 0.00 0.00 0.00 2.27
373 374 8.136165 GGAGAGCGTCTAGTAATTCATCTTTTA 58.864 37.037 0.00 0.00 0.00 1.52
374 375 9.517609 GAGAGCGTCTAGTAATTCATCTTTTAA 57.482 33.333 0.00 0.00 0.00 1.52
375 376 9.871238 AGAGCGTCTAGTAATTCATCTTTTAAA 57.129 29.630 0.00 0.00 0.00 1.52
403 404 9.480053 AAAACAATGTGTATCATTTGAAGAAGG 57.520 29.630 0.00 0.00 43.33 3.46
404 405 8.408043 AACAATGTGTATCATTTGAAGAAGGA 57.592 30.769 0.00 0.00 43.33 3.36
405 406 8.408043 ACAATGTGTATCATTTGAAGAAGGAA 57.592 30.769 0.00 0.00 43.33 3.36
406 407 8.859090 ACAATGTGTATCATTTGAAGAAGGAAA 58.141 29.630 0.00 0.00 43.33 3.13
407 408 9.695526 CAATGTGTATCATTTGAAGAAGGAAAA 57.304 29.630 0.00 0.00 43.33 2.29
416 417 9.981114 TCATTTGAAGAAGGAAAAATAAAGACC 57.019 29.630 0.00 0.00 0.00 3.85
417 418 8.915654 CATTTGAAGAAGGAAAAATAAAGACCG 58.084 33.333 0.00 0.00 0.00 4.79
418 419 7.811117 TTGAAGAAGGAAAAATAAAGACCGA 57.189 32.000 0.00 0.00 0.00 4.69
419 420 7.996098 TGAAGAAGGAAAAATAAAGACCGAT 57.004 32.000 0.00 0.00 0.00 4.18
420 421 8.040716 TGAAGAAGGAAAAATAAAGACCGATC 57.959 34.615 0.00 0.00 0.00 3.69
421 422 7.883311 TGAAGAAGGAAAAATAAAGACCGATCT 59.117 33.333 0.00 0.00 36.42 2.75
422 423 7.851387 AGAAGGAAAAATAAAGACCGATCTC 57.149 36.000 0.00 0.00 32.34 2.75
423 424 7.394816 AGAAGGAAAAATAAAGACCGATCTCA 58.605 34.615 0.00 0.00 32.34 3.27
424 425 8.049721 AGAAGGAAAAATAAAGACCGATCTCAT 58.950 33.333 0.00 0.00 32.34 2.90
425 426 9.326413 GAAGGAAAAATAAAGACCGATCTCATA 57.674 33.333 0.00 0.00 32.34 2.15
426 427 9.853177 AAGGAAAAATAAAGACCGATCTCATAT 57.147 29.630 0.00 0.00 32.34 1.78
438 439 9.859152 AGACCGATCTCATATAGATATGATTGA 57.141 33.333 11.67 7.90 45.35 2.57
466 467 9.877178 ATCTAGGTAAACATACTATATTGCTGC 57.123 33.333 0.00 0.00 0.00 5.25
467 468 8.866093 TCTAGGTAAACATACTATATTGCTGCA 58.134 33.333 0.00 0.00 0.00 4.41
468 469 9.489084 CTAGGTAAACATACTATATTGCTGCAA 57.511 33.333 18.43 18.43 0.00 4.08
469 470 8.924511 AGGTAAACATACTATATTGCTGCAAT 57.075 30.769 28.55 28.55 37.80 3.56
470 471 9.354673 AGGTAAACATACTATATTGCTGCAATT 57.645 29.630 30.35 20.01 35.54 2.32
471 472 9.612620 GGTAAACATACTATATTGCTGCAATTC 57.387 33.333 30.35 3.13 35.54 2.17
474 475 9.903682 AAACATACTATATTGCTGCAATTCATC 57.096 29.630 30.35 0.00 35.54 2.92
475 476 8.859236 ACATACTATATTGCTGCAATTCATCT 57.141 30.769 30.35 10.88 35.54 2.90
476 477 9.293404 ACATACTATATTGCTGCAATTCATCTT 57.707 29.630 30.35 14.03 35.54 2.40
477 478 9.770503 CATACTATATTGCTGCAATTCATCTTC 57.229 33.333 30.35 0.00 35.54 2.87
478 479 7.812690 ACTATATTGCTGCAATTCATCTTCA 57.187 32.000 30.35 12.30 35.54 3.02
479 480 8.405418 ACTATATTGCTGCAATTCATCTTCAT 57.595 30.769 30.35 17.88 35.54 2.57
480 481 8.512956 ACTATATTGCTGCAATTCATCTTCATC 58.487 33.333 30.35 0.00 35.54 2.92
481 482 5.592104 ATTGCTGCAATTCATCTTCATCA 57.408 34.783 21.48 0.00 28.76 3.07
482 483 5.592104 TTGCTGCAATTCATCTTCATCAT 57.408 34.783 11.69 0.00 0.00 2.45
483 484 5.183014 TGCTGCAATTCATCTTCATCATC 57.817 39.130 0.00 0.00 0.00 2.92
484 485 4.219802 GCTGCAATTCATCTTCATCATCG 58.780 43.478 0.00 0.00 0.00 3.84
485 486 4.024302 GCTGCAATTCATCTTCATCATCGA 60.024 41.667 0.00 0.00 0.00 3.59
486 487 5.413969 TGCAATTCATCTTCATCATCGAC 57.586 39.130 0.00 0.00 0.00 4.20
487 488 5.121105 TGCAATTCATCTTCATCATCGACT 58.879 37.500 0.00 0.00 0.00 4.18
488 489 5.235831 TGCAATTCATCTTCATCATCGACTC 59.764 40.000 0.00 0.00 0.00 3.36
489 490 5.235831 GCAATTCATCTTCATCATCGACTCA 59.764 40.000 0.00 0.00 0.00 3.41
490 491 6.073167 GCAATTCATCTTCATCATCGACTCAT 60.073 38.462 0.00 0.00 0.00 2.90
491 492 7.511463 CAATTCATCTTCATCATCGACTCATC 58.489 38.462 0.00 0.00 0.00 2.92
504 505 4.712191 CGACTCATCGTACTACTCGAAT 57.288 45.455 0.00 0.00 43.66 3.34
505 506 4.690096 CGACTCATCGTACTACTCGAATC 58.310 47.826 0.00 0.00 43.66 2.52
506 507 4.445052 CGACTCATCGTACTACTCGAATCT 59.555 45.833 0.00 0.00 43.66 2.40
507 508 5.628606 CGACTCATCGTACTACTCGAATCTA 59.371 44.000 0.00 0.00 43.66 1.98
508 509 6.398830 CGACTCATCGTACTACTCGAATCTAC 60.399 46.154 0.00 0.00 43.66 2.59
509 510 6.279123 ACTCATCGTACTACTCGAATCTACA 58.721 40.000 0.00 0.00 40.61 2.74
510 511 6.930164 ACTCATCGTACTACTCGAATCTACAT 59.070 38.462 0.00 0.00 40.61 2.29
511 512 8.087136 ACTCATCGTACTACTCGAATCTACATA 58.913 37.037 0.00 0.00 40.61 2.29
512 513 8.999220 TCATCGTACTACTCGAATCTACATAT 57.001 34.615 0.00 0.00 40.61 1.78
517 518 9.423427 CGTACTACTCGAATCTACATATATTGC 57.577 37.037 0.00 0.00 0.00 3.56
520 521 9.794685 ACTACTCGAATCTACATATATTGCATG 57.205 33.333 0.00 0.00 0.00 4.06
521 522 9.794685 CTACTCGAATCTACATATATTGCATGT 57.205 33.333 0.00 0.00 39.82 3.21
523 524 9.494271 ACTCGAATCTACATATATTGCATGTTT 57.506 29.630 0.00 0.00 37.74 2.83
530 531 8.229811 TCTACATATATTGCATGTTTTCATCGC 58.770 33.333 0.00 0.00 38.64 4.58
531 532 6.151691 ACATATATTGCATGTTTTCATCGCC 58.848 36.000 0.00 0.00 38.64 5.54
557 558 3.211045 AGGTGCGTGTAATGACTTTGTT 58.789 40.909 0.00 0.00 0.00 2.83
563 564 6.736853 GTGCGTGTAATGACTTTGTTAATCTC 59.263 38.462 0.00 0.00 0.00 2.75
566 567 7.962918 GCGTGTAATGACTTTGTTAATCTCAAT 59.037 33.333 0.00 0.00 0.00 2.57
581 582 9.669353 GTTAATCTCAATATATTGTGCAAGGTG 57.331 33.333 21.89 0.00 38.84 4.00
582 583 7.886629 AATCTCAATATATTGTGCAAGGTGT 57.113 32.000 21.89 3.57 38.84 4.16
585 586 8.382030 TCTCAATATATTGTGCAAGGTGTATG 57.618 34.615 21.89 0.00 38.84 2.39
586 587 7.992608 TCTCAATATATTGTGCAAGGTGTATGT 59.007 33.333 21.89 0.00 38.84 2.29
587 588 8.518430 TCAATATATTGTGCAAGGTGTATGTT 57.482 30.769 21.89 0.00 38.84 2.71
588 589 9.620259 TCAATATATTGTGCAAGGTGTATGTTA 57.380 29.630 21.89 0.00 38.84 2.41
589 590 9.663904 CAATATATTGTGCAAGGTGTATGTTAC 57.336 33.333 16.03 0.00 33.22 2.50
590 591 8.972458 ATATATTGTGCAAGGTGTATGTTACA 57.028 30.769 0.00 0.00 36.08 2.41
591 592 7.880160 ATATTGTGCAAGGTGTATGTTACAT 57.120 32.000 2.58 2.58 41.34 2.29
592 593 5.369685 TTGTGCAAGGTGTATGTTACATG 57.630 39.130 8.26 0.00 41.34 3.21
594 595 2.752354 TGCAAGGTGTATGTTACATGGC 59.248 45.455 8.26 1.73 41.34 4.40
598 599 1.330521 GGTGTATGTTACATGGCTGCG 59.669 52.381 8.26 0.00 41.34 5.18
616 617 1.136690 CGTGTGAGTGTATGTGCGTT 58.863 50.000 0.00 0.00 0.00 4.84
617 618 1.124297 CGTGTGAGTGTATGTGCGTTC 59.876 52.381 0.00 0.00 0.00 3.95
618 619 1.459592 GTGTGAGTGTATGTGCGTTCC 59.540 52.381 0.00 0.00 0.00 3.62
624 625 3.991773 GAGTGTATGTGCGTTCCTGTAAA 59.008 43.478 0.00 0.00 0.00 2.01
627 628 4.153475 GTGTATGTGCGTTCCTGTAAACAT 59.847 41.667 0.00 0.00 33.18 2.71
639 640 7.360861 CGTTCCTGTAAACATGTGTGATTGTAT 60.361 37.037 0.00 0.00 0.00 2.29
640 641 7.376435 TCCTGTAAACATGTGTGATTGTATG 57.624 36.000 0.00 0.00 0.00 2.39
641 642 7.164803 TCCTGTAAACATGTGTGATTGTATGA 58.835 34.615 0.00 0.00 0.00 2.15
642 643 7.828717 TCCTGTAAACATGTGTGATTGTATGAT 59.171 33.333 0.00 0.00 0.00 2.45
643 644 8.461222 CCTGTAAACATGTGTGATTGTATGATT 58.539 33.333 0.00 0.00 0.00 2.57
644 645 9.281075 CTGTAAACATGTGTGATTGTATGATTG 57.719 33.333 0.00 0.00 0.00 2.67
645 646 8.791675 TGTAAACATGTGTGATTGTATGATTGT 58.208 29.630 0.00 0.00 0.00 2.71
648 649 8.565896 AACATGTGTGATTGTATGATTGTACT 57.434 30.769 0.00 0.00 0.00 2.73
649 650 7.977904 ACATGTGTGATTGTATGATTGTACTG 58.022 34.615 0.00 0.00 0.00 2.74
661 662 9.549078 TGTATGATTGTACTGTGTGTAAAGAAA 57.451 29.630 0.00 0.00 32.25 2.52
674 675 7.278203 TGTGTGTAAAGAAAAACTGACGTGATA 59.722 33.333 0.00 0.00 0.00 2.15
675 676 8.117988 GTGTGTAAAGAAAAACTGACGTGATAA 58.882 33.333 0.00 0.00 0.00 1.75
697 698 2.094854 GTCCGTCTAATCACGTCCAACT 60.095 50.000 0.00 0.00 38.14 3.16
705 706 1.493772 TCACGTCCAACTACGCAAAG 58.506 50.000 0.00 0.00 46.71 2.77
734 735 0.246360 TCACCACTGACCAGCGTATG 59.754 55.000 0.00 0.00 0.00 2.39
749 750 2.415625 GCGTATGATATGTCCTCCGTCC 60.416 54.545 0.00 0.00 0.00 4.79
750 751 2.159558 CGTATGATATGTCCTCCGTCCG 60.160 54.545 0.00 0.00 0.00 4.79
858 861 2.290082 CGCGCCACCAACGAAAAAC 61.290 57.895 0.00 0.00 0.00 2.43
871 874 3.203716 ACGAAAAACGAAAGAGAAGCCT 58.796 40.909 0.00 0.00 45.77 4.58
1007 1014 1.650528 CCCAAACCCCCAGCAAAATA 58.349 50.000 0.00 0.00 0.00 1.40
1011 1018 3.370421 CCAAACCCCCAGCAAAATAATCC 60.370 47.826 0.00 0.00 0.00 3.01
1128 1158 2.111669 GGGACACCGTTTCCCGTT 59.888 61.111 7.01 0.00 43.62 4.44
1129 1159 1.962822 GGGACACCGTTTCCCGTTC 60.963 63.158 7.01 0.00 43.62 3.95
1130 1160 1.962822 GGACACCGTTTCCCGTTCC 60.963 63.158 0.00 0.00 33.66 3.62
1131 1161 1.962822 GACACCGTTTCCCGTTCCC 60.963 63.158 0.00 0.00 33.66 3.97
1132 1162 3.045492 CACCGTTTCCCGTTCCCG 61.045 66.667 0.00 0.00 33.66 5.14
1133 1163 4.994471 ACCGTTTCCCGTTCCCGC 62.994 66.667 0.00 0.00 33.66 6.13
1134 1164 4.992511 CCGTTTCCCGTTCCCGCA 62.993 66.667 0.00 0.00 33.66 5.69
1135 1165 2.973600 CGTTTCCCGTTCCCGCAA 60.974 61.111 0.00 0.00 0.00 4.85
1157 1187 3.810896 GTCACGCCCCCGCAAATC 61.811 66.667 0.00 0.00 38.22 2.17
1245 1275 3.068691 TGCCCGTTCTCCTCCTCG 61.069 66.667 0.00 0.00 0.00 4.63
1246 1276 4.516195 GCCCGTTCTCCTCCTCGC 62.516 72.222 0.00 0.00 0.00 5.03
1248 1278 2.756283 CCGTTCTCCTCCTCGCCT 60.756 66.667 0.00 0.00 0.00 5.52
1249 1279 2.776913 CCGTTCTCCTCCTCGCCTC 61.777 68.421 0.00 0.00 0.00 4.70
1784 1817 1.676635 CTGGGTCGTCAGGTCCGTA 60.677 63.158 0.00 0.00 0.00 4.02
1796 1829 1.965935 GGTCCGTACCTACTCCTCTC 58.034 60.000 0.00 0.00 43.08 3.20
1797 1830 1.476652 GGTCCGTACCTACTCCTCTCC 60.477 61.905 0.00 0.00 43.08 3.71
1838 1871 1.409661 GCCCCTCCATTATTGGTCGTT 60.410 52.381 3.65 0.00 44.06 3.85
1841 1874 3.435026 CCCCTCCATTATTGGTCGTTCAT 60.435 47.826 3.65 0.00 44.06 2.57
1853 1886 2.737252 GGTCGTTCATGAACCTCTCAAC 59.263 50.000 28.40 17.28 37.67 3.18
1887 1920 3.388024 TGTTCTTCCACTTGTCAGCTACT 59.612 43.478 0.00 0.00 0.00 2.57
1888 1921 4.587262 TGTTCTTCCACTTGTCAGCTACTA 59.413 41.667 0.00 0.00 0.00 1.82
1889 1922 4.785511 TCTTCCACTTGTCAGCTACTAC 57.214 45.455 0.00 0.00 0.00 2.73
1890 1923 4.408276 TCTTCCACTTGTCAGCTACTACT 58.592 43.478 0.00 0.00 0.00 2.57
1985 2036 5.010719 TCTCTTCACCTTTGTCACGTAATCT 59.989 40.000 0.00 0.00 0.00 2.40
1987 2038 6.931838 TCTTCACCTTTGTCACGTAATCTAT 58.068 36.000 0.00 0.00 0.00 1.98
1997 2048 6.993079 TGTCACGTAATCTATGGAAGCATAT 58.007 36.000 0.00 0.00 0.00 1.78
1998 2049 8.117813 TGTCACGTAATCTATGGAAGCATATA 57.882 34.615 0.00 0.00 0.00 0.86
2087 2149 1.680338 GACCGCTGGCTCCATTAAAT 58.320 50.000 0.00 0.00 0.00 1.40
2158 2222 5.683876 TTCTAGAGGAAATTGCAGTAGCT 57.316 39.130 0.00 0.00 42.74 3.32
2167 2231 1.227999 TTGCAGTAGCTGGTTCGTGC 61.228 55.000 0.00 0.00 42.74 5.34
2225 2291 1.872388 TATTCCCACACACACACACG 58.128 50.000 0.00 0.00 0.00 4.49
2255 2323 3.243907 GGACAGGATGGTGTAGTAGATGC 60.244 52.174 0.00 0.00 43.62 3.91
2370 2442 3.113260 CTCGTGGAGGAATATGGGTTC 57.887 52.381 0.00 0.00 0.00 3.62
2425 2497 2.675317 CGAAGGTGACAACTCCATCTCC 60.675 54.545 0.00 0.00 32.71 3.71
2572 2666 9.482627 TTTTCTGAAAAGTCAAAACTAGCAAAA 57.517 25.926 11.33 0.00 33.48 2.44
2589 2683 5.600696 AGCAAAACTTTGACTGGGTTTATG 58.399 37.500 6.37 0.00 40.55 1.90
2601 2695 5.321927 ACTGGGTTTATGTAGGGAAAACAG 58.678 41.667 0.00 0.00 35.33 3.16
2606 2700 7.037153 TGGGTTTATGTAGGGAAAACAGTCTAT 60.037 37.037 0.00 0.00 35.33 1.98
2607 2701 7.282450 GGGTTTATGTAGGGAAAACAGTCTATG 59.718 40.741 0.00 0.00 35.33 2.23
2665 2759 4.094887 AGTTCATAACGTGTCCATTGATGC 59.905 41.667 0.00 0.00 36.23 3.91
2675 2769 1.877443 TCCATTGATGCGCATCTGATG 59.123 47.619 40.90 37.46 38.60 3.07
2894 2991 8.955061 ATAAAACACACATCTGAAAAAGATCG 57.045 30.769 0.00 0.00 44.24 3.69
2903 3000 7.848051 CACATCTGAAAAAGATCGTATACTTGC 59.152 37.037 0.56 0.00 44.24 4.01
3076 3176 3.334583 TGTATCCAACTCAACTGAGCC 57.665 47.619 6.63 0.00 45.79 4.70
3124 3224 1.254954 AAGTGACAGTCTACCCGGTC 58.745 55.000 0.00 0.00 0.00 4.79
3367 3470 6.058183 GGTCACCTGATATATGCTTTCACTT 58.942 40.000 0.00 0.00 0.00 3.16
3761 3867 7.147976 AGTTTTGCCATGTCAAAGATAAACTC 58.852 34.615 1.78 0.00 37.27 3.01
3837 3943 1.270252 ACGGCTGCCAAGGAAAAATTG 60.270 47.619 20.29 0.00 0.00 2.32
3984 4090 0.538057 TGGTGCCAAAAGAGCTCCAG 60.538 55.000 10.93 0.00 46.09 3.86
4192 4310 4.981674 TCGGTTCAACGTCGTATTTTACTT 59.018 37.500 0.00 0.00 34.94 2.24
4195 4313 6.727534 CGGTTCAACGTCGTATTTTACTTTAC 59.272 38.462 0.00 0.00 0.00 2.01
4197 4315 7.946768 GGTTCAACGTCGTATTTTACTTTACTC 59.053 37.037 0.00 0.00 0.00 2.59
4315 4456 1.095807 GGGACATAGCGGTCTTTGCC 61.096 60.000 0.00 0.00 37.91 4.52
4316 4457 0.392461 GGACATAGCGGTCTTTGCCA 60.392 55.000 0.00 0.00 37.91 4.92
4691 4834 7.685481 TGTCTCCCTGTGTTTATTTTCTCATA 58.315 34.615 0.00 0.00 0.00 2.15
4721 4864 1.065854 GCAGTGACAGCCAGGAAGTAT 60.066 52.381 0.00 0.00 0.00 2.12
4900 5044 2.500910 AGAGTCATGAGAAGCCTCCAAG 59.499 50.000 0.00 0.00 38.66 3.61
5045 5189 2.882761 GGCGTCCCTTCTTTAAAACTGT 59.117 45.455 0.00 0.00 0.00 3.55
5297 5441 6.049149 CCACAGGTATGGACTTGTATGTTAG 58.951 44.000 0.00 0.00 43.55 2.34
5301 5445 6.986817 CAGGTATGGACTTGTATGTTAGGAAG 59.013 42.308 0.00 0.00 0.00 3.46
5319 5463 4.421033 GAAGGAAAGTAAAAGCCCTTCG 57.579 45.455 0.00 0.00 42.09 3.79
5413 5557 8.946085 TCCATAGTTTGTTGTAAGCTCTAATTG 58.054 33.333 0.00 0.00 0.00 2.32
5432 5576 2.528564 TGCCAAGGCTCTAATTTTGCT 58.471 42.857 12.96 0.00 42.51 3.91
5443 5587 7.231519 AGGCTCTAATTTTGCTAGTCTTGTTTT 59.768 33.333 0.00 0.00 0.00 2.43
5447 5591 8.495949 TCTAATTTTGCTAGTCTTGTTTTCTCG 58.504 33.333 0.00 0.00 0.00 4.04
5510 5654 7.040062 CCTTGTTTCCTCATAACCACAAATACA 60.040 37.037 0.00 0.00 0.00 2.29
5599 5745 2.217750 GGTTTTGGTTGGTCAAATGGC 58.782 47.619 0.00 0.00 36.63 4.40
5686 5832 1.435408 GAGATCAAGCAAGCCGCCTC 61.435 60.000 0.00 0.00 44.04 4.70
5718 5864 1.782044 ATGTGCACACGCCAAAAATC 58.218 45.000 24.37 0.00 37.32 2.17
5736 5883 6.521527 AAAATCTATGGAAGAGCCCTACAT 57.478 37.500 0.00 0.00 37.74 2.29
5849 5996 8.715191 ATTCTTTTTGTTACAAAATGACAGCA 57.285 26.923 27.30 18.28 0.00 4.41
5853 6000 4.852134 TGTTACAAAATGACAGCATGCT 57.148 36.364 16.30 16.30 42.53 3.79
5865 6012 2.442084 GCATGCTGTTGCTCTTTGC 58.558 52.632 11.37 0.00 39.57 3.68
5875 6022 5.418310 TGTTGCTCTTTGCTGTAACTAAC 57.582 39.130 0.00 0.00 43.37 2.34
5895 6042 1.268692 CGTTATAGCCGGCGAACTGTA 60.269 52.381 27.82 14.75 0.00 2.74
5910 6057 4.139234 GTACCCCGACAGTCGCCC 62.139 72.222 18.02 0.00 38.82 6.13
5931 6078 3.181530 CCGACATTCTTCTGCTGTTTACG 60.182 47.826 0.00 0.00 0.00 3.18
5934 6081 3.433615 ACATTCTTCTGCTGTTTACGCTC 59.566 43.478 0.00 0.00 0.00 5.03
5938 6085 4.486090 TCTTCTGCTGTTTACGCTCTAAG 58.514 43.478 0.00 0.00 0.00 2.18
5940 6087 2.029380 TCTGCTGTTTACGCTCTAAGCA 60.029 45.455 0.00 3.17 42.58 3.91
6072 6219 8.567948 TCCTGCTTGTTAAATGCTTTATATAGC 58.432 33.333 8.12 8.12 41.59 2.97
6163 6339 3.262420 CCTCTGGTTGATAACGAACCTG 58.738 50.000 0.00 0.00 43.00 4.00
6250 6426 7.010460 TGCAATTTGTAATCAGAGTACGAGATG 59.990 37.037 3.66 5.97 0.00 2.90
6254 6430 2.791383 ATCAGAGTACGAGATGCAGC 57.209 50.000 0.00 0.00 0.00 5.25
6266 6447 3.254411 CGAGATGCAGCTCCTATAAGTGA 59.746 47.826 25.34 0.00 0.00 3.41
6313 6494 8.519526 TGGTTGAGTATAATTTTGGTTCATCAC 58.480 33.333 0.00 0.00 0.00 3.06
6359 6540 8.763049 AGGTAACCTACAAAAACGTCTTATAC 57.237 34.615 0.00 0.00 28.47 1.47
6360 6541 7.542130 AGGTAACCTACAAAAACGTCTTATACG 59.458 37.037 0.00 0.00 44.87 3.06
6376 6557 8.710551 CGTCTTATACGTATTATGAGACAGAGT 58.289 37.037 24.55 2.80 46.92 3.24
6438 6619 7.917003 AGGGGATACAAAAATAACAAGCAAAT 58.083 30.769 0.00 0.00 39.74 2.32
6459 6647 1.671742 CCGACCTACAGCCAACACT 59.328 57.895 0.00 0.00 0.00 3.55
6541 6729 2.041755 CCTAGGCAGAGGGGAAAACTTT 59.958 50.000 0.00 0.00 32.39 2.66
6562 6750 7.592938 ACTTTAAAGCGATCAAAACATCATGA 58.407 30.769 15.24 0.00 0.00 3.07
6601 6789 7.230849 TCGACTCCTTAACCATGTAGTTTTA 57.769 36.000 0.00 0.00 0.00 1.52
6610 6798 8.749026 TTAACCATGTAGTTTTACCAACTTCA 57.251 30.769 0.00 0.00 33.27 3.02
6649 6837 1.008309 GCGTGCGTAAAGGCCAAAA 60.008 52.632 5.01 0.00 0.00 2.44
6659 6847 0.326143 AAGGCCAAAACACCAACCCT 60.326 50.000 5.01 0.00 0.00 4.34
6710 6898 0.786435 AAGGTTTCCCTGGCTCCAAT 59.214 50.000 0.00 0.00 41.56 3.16
6766 6955 1.269723 CTTCAGTGCTGGTAGTCGTCA 59.730 52.381 0.00 0.00 0.00 4.35
6823 7012 9.887629 TTATTATTTCGGGTGTTCATTGTACTA 57.112 29.630 0.00 0.00 0.00 1.82
6952 7142 8.615211 AGAAATCAAAAGAATTTCAAAAGGCAC 58.385 29.630 10.27 0.00 42.81 5.01
6953 7143 5.964887 TCAAAAGAATTTCAAAAGGCACG 57.035 34.783 0.00 0.00 37.28 5.34
6954 7144 4.269844 TCAAAAGAATTTCAAAAGGCACGC 59.730 37.500 0.00 0.00 37.28 5.34
6955 7145 2.438868 AGAATTTCAAAAGGCACGCC 57.561 45.000 0.00 0.00 0.00 5.68
6956 7146 1.686052 AGAATTTCAAAAGGCACGCCA 59.314 42.857 11.35 0.00 38.92 5.69
6991 7182 7.718334 AAAGAAGTAAATTGGGACTATTGGG 57.282 36.000 0.00 0.00 0.00 4.12
7016 7208 9.575783 GGTTTGTGTGTTTCTTTTTATGAACTA 57.424 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.879993 TGTAAATAAAGCAAGGACGTCCATAA 59.120 34.615 35.00 13.85 38.89 1.90
1 2 6.408035 TGTAAATAAAGCAAGGACGTCCATA 58.592 36.000 35.00 17.51 38.89 2.74
2 3 5.250200 TGTAAATAAAGCAAGGACGTCCAT 58.750 37.500 35.00 22.65 38.89 3.41
3 4 4.643463 TGTAAATAAAGCAAGGACGTCCA 58.357 39.130 35.00 14.19 38.89 4.02
4 5 5.813080 ATGTAAATAAAGCAAGGACGTCC 57.187 39.130 27.67 27.67 0.00 4.79
5 6 6.027749 CCAATGTAAATAAAGCAAGGACGTC 58.972 40.000 7.13 7.13 0.00 4.34
6 7 5.708230 TCCAATGTAAATAAAGCAAGGACGT 59.292 36.000 0.00 0.00 0.00 4.34
7 8 6.189677 TCCAATGTAAATAAAGCAAGGACG 57.810 37.500 0.00 0.00 0.00 4.79
8 9 6.036470 GCTCCAATGTAAATAAAGCAAGGAC 58.964 40.000 0.00 0.00 0.00 3.85
9 10 5.163663 CGCTCCAATGTAAATAAAGCAAGGA 60.164 40.000 0.00 0.00 0.00 3.36
10 11 5.036737 CGCTCCAATGTAAATAAAGCAAGG 58.963 41.667 0.00 0.00 0.00 3.61
11 12 4.500477 GCGCTCCAATGTAAATAAAGCAAG 59.500 41.667 0.00 0.00 0.00 4.01
12 13 4.082517 TGCGCTCCAATGTAAATAAAGCAA 60.083 37.500 9.73 0.00 0.00 3.91
13 14 3.441922 TGCGCTCCAATGTAAATAAAGCA 59.558 39.130 9.73 0.00 0.00 3.91
14 15 4.027572 TGCGCTCCAATGTAAATAAAGC 57.972 40.909 9.73 0.00 0.00 3.51
15 16 6.942886 TTTTGCGCTCCAATGTAAATAAAG 57.057 33.333 9.73 0.00 32.49 1.85
16 17 8.247562 ACTATTTTGCGCTCCAATGTAAATAAA 58.752 29.630 9.73 0.00 32.49 1.40
17 18 7.700234 CACTATTTTGCGCTCCAATGTAAATAA 59.300 33.333 9.73 0.00 32.49 1.40
18 19 7.192913 CACTATTTTGCGCTCCAATGTAAATA 58.807 34.615 9.73 5.44 32.49 1.40
19 20 6.035843 CACTATTTTGCGCTCCAATGTAAAT 58.964 36.000 9.73 4.61 32.49 1.40
20 21 5.398169 CACTATTTTGCGCTCCAATGTAAA 58.602 37.500 9.73 0.00 32.49 2.01
21 22 4.142491 CCACTATTTTGCGCTCCAATGTAA 60.142 41.667 9.73 0.00 32.49 2.41
22 23 3.376859 CCACTATTTTGCGCTCCAATGTA 59.623 43.478 9.73 0.00 32.49 2.29
23 24 2.164219 CCACTATTTTGCGCTCCAATGT 59.836 45.455 9.73 0.00 32.49 2.71
24 25 2.480073 CCCACTATTTTGCGCTCCAATG 60.480 50.000 9.73 0.00 32.49 2.82
25 26 1.750778 CCCACTATTTTGCGCTCCAAT 59.249 47.619 9.73 6.73 32.49 3.16
26 27 1.173043 CCCACTATTTTGCGCTCCAA 58.827 50.000 9.73 0.00 0.00 3.53
27 28 0.326595 TCCCACTATTTTGCGCTCCA 59.673 50.000 9.73 0.00 0.00 3.86
28 29 1.680338 ATCCCACTATTTTGCGCTCC 58.320 50.000 9.73 0.00 0.00 4.70
29 30 2.223572 CCAATCCCACTATTTTGCGCTC 60.224 50.000 9.73 0.00 0.00 5.03
30 31 1.750778 CCAATCCCACTATTTTGCGCT 59.249 47.619 9.73 0.00 0.00 5.92
31 32 1.802508 GCCAATCCCACTATTTTGCGC 60.803 52.381 0.00 0.00 0.00 6.09
32 33 1.533756 CGCCAATCCCACTATTTTGCG 60.534 52.381 0.00 0.00 33.74 4.85
33 34 1.202405 CCGCCAATCCCACTATTTTGC 60.202 52.381 0.00 0.00 0.00 3.68
34 35 2.099098 GTCCGCCAATCCCACTATTTTG 59.901 50.000 0.00 0.00 0.00 2.44
35 36 2.291282 TGTCCGCCAATCCCACTATTTT 60.291 45.455 0.00 0.00 0.00 1.82
36 37 1.283613 TGTCCGCCAATCCCACTATTT 59.716 47.619 0.00 0.00 0.00 1.40
37 38 0.916086 TGTCCGCCAATCCCACTATT 59.084 50.000 0.00 0.00 0.00 1.73
38 39 1.140312 ATGTCCGCCAATCCCACTAT 58.860 50.000 0.00 0.00 0.00 2.12
39 40 0.916086 AATGTCCGCCAATCCCACTA 59.084 50.000 0.00 0.00 0.00 2.74
40 41 0.039618 AAATGTCCGCCAATCCCACT 59.960 50.000 0.00 0.00 0.00 4.00
41 42 0.894835 AAAATGTCCGCCAATCCCAC 59.105 50.000 0.00 0.00 0.00 4.61
42 43 1.181786 GAAAATGTCCGCCAATCCCA 58.818 50.000 0.00 0.00 0.00 4.37
43 44 0.459899 GGAAAATGTCCGCCAATCCC 59.540 55.000 0.00 0.00 36.40 3.85
55 56 9.815936 GCAAAAAGAAATTCTACATGGAAAATG 57.184 29.630 0.00 0.00 0.00 2.32
56 57 9.558396 TGCAAAAAGAAATTCTACATGGAAAAT 57.442 25.926 0.00 0.00 0.00 1.82
57 58 8.954950 TGCAAAAAGAAATTCTACATGGAAAA 57.045 26.923 0.00 0.00 0.00 2.29
58 59 8.954950 TTGCAAAAAGAAATTCTACATGGAAA 57.045 26.923 0.00 0.00 0.00 3.13
59 60 7.171337 GCTTGCAAAAAGAAATTCTACATGGAA 59.829 33.333 0.00 2.77 0.00 3.53
60 61 6.646240 GCTTGCAAAAAGAAATTCTACATGGA 59.354 34.615 0.00 0.00 0.00 3.41
61 62 6.128472 GGCTTGCAAAAAGAAATTCTACATGG 60.128 38.462 0.00 0.00 0.00 3.66
62 63 6.647895 AGGCTTGCAAAAAGAAATTCTACATG 59.352 34.615 0.00 0.00 0.00 3.21
63 64 6.762333 AGGCTTGCAAAAAGAAATTCTACAT 58.238 32.000 0.00 0.00 0.00 2.29
64 65 6.160576 AGGCTTGCAAAAAGAAATTCTACA 57.839 33.333 0.00 0.00 0.00 2.74
65 66 7.439356 AGAAAGGCTTGCAAAAAGAAATTCTAC 59.561 33.333 8.21 0.00 0.00 2.59
66 67 7.500141 AGAAAGGCTTGCAAAAAGAAATTCTA 58.500 30.769 8.21 0.00 0.00 2.10
67 68 6.351711 AGAAAGGCTTGCAAAAAGAAATTCT 58.648 32.000 8.21 2.06 0.00 2.40
68 69 6.258507 TGAGAAAGGCTTGCAAAAAGAAATTC 59.741 34.615 8.21 0.00 0.00 2.17
69 70 6.114767 TGAGAAAGGCTTGCAAAAAGAAATT 58.885 32.000 8.21 0.00 0.00 1.82
70 71 5.673514 TGAGAAAGGCTTGCAAAAAGAAAT 58.326 33.333 8.21 0.00 0.00 2.17
71 72 5.083533 TGAGAAAGGCTTGCAAAAAGAAA 57.916 34.783 8.21 0.00 0.00 2.52
72 73 4.734398 TGAGAAAGGCTTGCAAAAAGAA 57.266 36.364 8.21 0.00 0.00 2.52
73 74 4.262164 GGATGAGAAAGGCTTGCAAAAAGA 60.262 41.667 8.21 0.00 0.00 2.52
74 75 3.992427 GGATGAGAAAGGCTTGCAAAAAG 59.008 43.478 8.21 0.00 0.00 2.27
75 76 3.552684 CGGATGAGAAAGGCTTGCAAAAA 60.553 43.478 8.21 0.00 0.00 1.94
76 77 2.030007 CGGATGAGAAAGGCTTGCAAAA 60.030 45.455 8.21 0.00 0.00 2.44
77 78 1.541147 CGGATGAGAAAGGCTTGCAAA 59.459 47.619 8.21 0.00 0.00 3.68
78 79 1.167851 CGGATGAGAAAGGCTTGCAA 58.832 50.000 8.21 0.00 0.00 4.08
79 80 0.677731 CCGGATGAGAAAGGCTTGCA 60.678 55.000 8.21 4.11 0.00 4.08
80 81 0.392998 TCCGGATGAGAAAGGCTTGC 60.393 55.000 0.00 0.00 0.00 4.01
81 82 2.113860 TTCCGGATGAGAAAGGCTTG 57.886 50.000 4.15 0.00 0.00 4.01
82 83 2.239654 TGATTCCGGATGAGAAAGGCTT 59.760 45.455 4.15 0.00 0.00 4.35
83 84 1.839994 TGATTCCGGATGAGAAAGGCT 59.160 47.619 4.15 0.00 0.00 4.58
84 85 2.332063 TGATTCCGGATGAGAAAGGC 57.668 50.000 4.15 0.00 0.00 4.35
85 86 4.274459 GTGATTGATTCCGGATGAGAAAGG 59.726 45.833 4.15 0.00 0.00 3.11
86 87 4.025396 CGTGATTGATTCCGGATGAGAAAG 60.025 45.833 4.15 0.00 0.00 2.62
87 88 3.871006 CGTGATTGATTCCGGATGAGAAA 59.129 43.478 4.15 0.00 0.00 2.52
88 89 3.457234 CGTGATTGATTCCGGATGAGAA 58.543 45.455 4.15 0.00 0.00 2.87
89 90 2.224042 CCGTGATTGATTCCGGATGAGA 60.224 50.000 4.15 0.00 39.27 3.27
90 91 2.138320 CCGTGATTGATTCCGGATGAG 58.862 52.381 4.15 0.00 39.27 2.90
91 92 1.202639 CCCGTGATTGATTCCGGATGA 60.203 52.381 4.15 0.00 39.27 2.92
92 93 1.229428 CCCGTGATTGATTCCGGATG 58.771 55.000 4.15 0.00 39.27 3.51
93 94 0.837272 ACCCGTGATTGATTCCGGAT 59.163 50.000 4.15 0.00 39.27 4.18
94 95 0.616371 AACCCGTGATTGATTCCGGA 59.384 50.000 0.00 0.00 39.27 5.14
95 96 1.014352 GAACCCGTGATTGATTCCGG 58.986 55.000 0.00 0.00 37.70 5.14
96 97 1.014352 GGAACCCGTGATTGATTCCG 58.986 55.000 0.00 0.00 30.17 4.30
123 124 8.689061 GGTAATACCCGTAATTGATTCCTTTTT 58.311 33.333 0.00 0.00 30.04 1.94
124 125 8.229253 GGTAATACCCGTAATTGATTCCTTTT 57.771 34.615 0.00 0.00 30.04 2.27
125 126 7.812690 GGTAATACCCGTAATTGATTCCTTT 57.187 36.000 0.00 0.00 30.04 3.11
141 142 2.401568 TCCTTTCCCTCGGGTAATACC 58.598 52.381 0.00 0.00 37.60 2.73
142 143 4.492494 TTTCCTTTCCCTCGGGTAATAC 57.508 45.455 1.18 0.00 36.47 1.89
143 144 5.517620 TTTTTCCTTTCCCTCGGGTAATA 57.482 39.130 1.18 0.00 36.47 0.98
144 145 4.391683 TTTTTCCTTTCCCTCGGGTAAT 57.608 40.909 1.18 0.00 36.47 1.89
145 146 3.880168 TTTTTCCTTTCCCTCGGGTAA 57.120 42.857 1.18 0.00 36.47 2.85
146 147 4.289148 TGTATTTTTCCTTTCCCTCGGGTA 59.711 41.667 1.18 0.00 36.47 3.69
147 148 2.992847 ATTTTTCCTTTCCCTCGGGT 57.007 45.000 1.18 0.00 36.47 5.28
148 149 3.692690 TGTATTTTTCCTTTCCCTCGGG 58.307 45.455 0.00 0.00 0.00 5.14
149 150 5.715434 TTTGTATTTTTCCTTTCCCTCGG 57.285 39.130 0.00 0.00 0.00 4.63
150 151 9.353999 CTATTTTTGTATTTTTCCTTTCCCTCG 57.646 33.333 0.00 0.00 0.00 4.63
151 152 9.653287 CCTATTTTTGTATTTTTCCTTTCCCTC 57.347 33.333 0.00 0.00 0.00 4.30
152 153 8.602424 CCCTATTTTTGTATTTTTCCTTTCCCT 58.398 33.333 0.00 0.00 0.00 4.20
153 154 7.827236 CCCCTATTTTTGTATTTTTCCTTTCCC 59.173 37.037 0.00 0.00 0.00 3.97
154 155 7.827236 CCCCCTATTTTTGTATTTTTCCTTTCC 59.173 37.037 0.00 0.00 0.00 3.13
155 156 8.380099 ACCCCCTATTTTTGTATTTTTCCTTTC 58.620 33.333 0.00 0.00 0.00 2.62
156 157 8.282801 ACCCCCTATTTTTGTATTTTTCCTTT 57.717 30.769 0.00 0.00 0.00 3.11
157 158 7.514473 TGACCCCCTATTTTTGTATTTTTCCTT 59.486 33.333 0.00 0.00 0.00 3.36
158 159 7.020009 TGACCCCCTATTTTTGTATTTTTCCT 58.980 34.615 0.00 0.00 0.00 3.36
159 160 7.247456 TGACCCCCTATTTTTGTATTTTTCC 57.753 36.000 0.00 0.00 0.00 3.13
160 161 9.161629 CAATGACCCCCTATTTTTGTATTTTTC 57.838 33.333 0.00 0.00 0.00 2.29
161 162 7.609918 GCAATGACCCCCTATTTTTGTATTTTT 59.390 33.333 0.00 0.00 0.00 1.94
162 163 7.109501 GCAATGACCCCCTATTTTTGTATTTT 58.890 34.615 0.00 0.00 0.00 1.82
163 164 6.352651 GGCAATGACCCCCTATTTTTGTATTT 60.353 38.462 0.00 0.00 0.00 1.40
164 165 5.130311 GGCAATGACCCCCTATTTTTGTATT 59.870 40.000 0.00 0.00 0.00 1.89
165 166 4.653801 GGCAATGACCCCCTATTTTTGTAT 59.346 41.667 0.00 0.00 0.00 2.29
166 167 4.027437 GGCAATGACCCCCTATTTTTGTA 58.973 43.478 0.00 0.00 0.00 2.41
167 168 2.837591 GGCAATGACCCCCTATTTTTGT 59.162 45.455 0.00 0.00 0.00 2.83
168 169 2.159114 CGGCAATGACCCCCTATTTTTG 60.159 50.000 0.00 0.00 0.00 2.44
169 170 2.107366 CGGCAATGACCCCCTATTTTT 58.893 47.619 0.00 0.00 0.00 1.94
170 171 1.006639 ACGGCAATGACCCCCTATTTT 59.993 47.619 0.00 0.00 0.00 1.82
171 172 0.629058 ACGGCAATGACCCCCTATTT 59.371 50.000 0.00 0.00 0.00 1.40
172 173 0.629058 AACGGCAATGACCCCCTATT 59.371 50.000 0.00 0.00 0.00 1.73
173 174 0.629058 AAACGGCAATGACCCCCTAT 59.371 50.000 0.00 0.00 0.00 2.57
174 175 0.406361 AAAACGGCAATGACCCCCTA 59.594 50.000 0.00 0.00 0.00 3.53
175 176 0.471022 AAAAACGGCAATGACCCCCT 60.471 50.000 0.00 0.00 0.00 4.79
176 177 2.054458 AAAAACGGCAATGACCCCC 58.946 52.632 0.00 0.00 0.00 5.40
191 192 4.808364 CGTCATTTCTTTTCTGGCCAAAAA 59.192 37.500 7.01 14.98 0.00 1.94
192 193 4.367450 CGTCATTTCTTTTCTGGCCAAAA 58.633 39.130 7.01 4.42 0.00 2.44
193 194 3.243704 CCGTCATTTCTTTTCTGGCCAAA 60.244 43.478 7.01 1.05 0.00 3.28
194 195 2.295909 CCGTCATTTCTTTTCTGGCCAA 59.704 45.455 7.01 0.00 0.00 4.52
195 196 1.885887 CCGTCATTTCTTTTCTGGCCA 59.114 47.619 4.71 4.71 0.00 5.36
196 197 2.159382 TCCGTCATTTCTTTTCTGGCC 58.841 47.619 0.00 0.00 0.00 5.36
197 198 3.074412 TCTCCGTCATTTCTTTTCTGGC 58.926 45.455 0.00 0.00 0.00 4.85
198 199 4.154918 CCTTCTCCGTCATTTCTTTTCTGG 59.845 45.833 0.00 0.00 0.00 3.86
199 200 4.154918 CCCTTCTCCGTCATTTCTTTTCTG 59.845 45.833 0.00 0.00 0.00 3.02
200 201 4.041691 TCCCTTCTCCGTCATTTCTTTTCT 59.958 41.667 0.00 0.00 0.00 2.52
201 202 4.324267 TCCCTTCTCCGTCATTTCTTTTC 58.676 43.478 0.00 0.00 0.00 2.29
202 203 4.367039 TCCCTTCTCCGTCATTTCTTTT 57.633 40.909 0.00 0.00 0.00 2.27
203 204 4.327680 CTTCCCTTCTCCGTCATTTCTTT 58.672 43.478 0.00 0.00 0.00 2.52
204 205 3.870299 GCTTCCCTTCTCCGTCATTTCTT 60.870 47.826 0.00 0.00 0.00 2.52
205 206 2.355209 GCTTCCCTTCTCCGTCATTTCT 60.355 50.000 0.00 0.00 0.00 2.52
206 207 2.010497 GCTTCCCTTCTCCGTCATTTC 58.990 52.381 0.00 0.00 0.00 2.17
207 208 1.351017 TGCTTCCCTTCTCCGTCATTT 59.649 47.619 0.00 0.00 0.00 2.32
208 209 0.984230 TGCTTCCCTTCTCCGTCATT 59.016 50.000 0.00 0.00 0.00 2.57
209 210 0.984230 TTGCTTCCCTTCTCCGTCAT 59.016 50.000 0.00 0.00 0.00 3.06
210 211 0.321671 CTTGCTTCCCTTCTCCGTCA 59.678 55.000 0.00 0.00 0.00 4.35
211 212 1.021920 GCTTGCTTCCCTTCTCCGTC 61.022 60.000 0.00 0.00 0.00 4.79
212 213 1.003233 GCTTGCTTCCCTTCTCCGT 60.003 57.895 0.00 0.00 0.00 4.69
213 214 1.746991 GGCTTGCTTCCCTTCTCCG 60.747 63.158 0.00 0.00 0.00 4.63
214 215 1.379176 GGGCTTGCTTCCCTTCTCC 60.379 63.158 1.91 0.00 40.66 3.71
215 216 1.379176 GGGGCTTGCTTCCCTTCTC 60.379 63.158 8.11 0.00 43.41 2.87
216 217 2.766660 GGGGCTTGCTTCCCTTCT 59.233 61.111 8.11 0.00 43.41 2.85
217 218 2.751837 CGGGGCTTGCTTCCCTTC 60.752 66.667 8.11 0.00 43.41 3.46
218 219 3.569200 GACGGGGCTTGCTTCCCTT 62.569 63.158 8.11 0.00 43.41 3.95
219 220 4.035102 GACGGGGCTTGCTTCCCT 62.035 66.667 8.11 0.00 43.41 4.20
222 223 2.193087 TTAGGGACGGGGCTTGCTTC 62.193 60.000 0.00 0.00 0.00 3.86
223 224 1.785353 TTTAGGGACGGGGCTTGCTT 61.785 55.000 0.00 0.00 0.00 3.91
224 225 1.785353 TTTTAGGGACGGGGCTTGCT 61.785 55.000 0.00 0.00 0.00 3.91
225 226 0.896479 TTTTTAGGGACGGGGCTTGC 60.896 55.000 0.00 0.00 0.00 4.01
226 227 3.349879 TTTTTAGGGACGGGGCTTG 57.650 52.632 0.00 0.00 0.00 4.01
247 248 9.617523 GGATTTTTCATGATTTTTATCCATGGT 57.382 29.630 12.58 1.59 38.47 3.55
248 249 9.841295 AGGATTTTTCATGATTTTTATCCATGG 57.159 29.630 4.97 4.97 38.47 3.66
251 252 9.044646 TGGAGGATTTTTCATGATTTTTATCCA 57.955 29.630 17.71 13.69 34.20 3.41
252 253 9.889128 TTGGAGGATTTTTCATGATTTTTATCC 57.111 29.630 0.00 5.60 0.00 2.59
256 257 9.631257 ACTTTTGGAGGATTTTTCATGATTTTT 57.369 25.926 0.00 0.00 0.00 1.94
258 259 9.710900 GTACTTTTGGAGGATTTTTCATGATTT 57.289 29.630 0.00 0.00 0.00 2.17
259 260 9.093458 AGTACTTTTGGAGGATTTTTCATGATT 57.907 29.630 0.00 0.00 0.00 2.57
260 261 8.655935 AGTACTTTTGGAGGATTTTTCATGAT 57.344 30.769 0.00 0.00 0.00 2.45
261 262 7.176690 GGAGTACTTTTGGAGGATTTTTCATGA 59.823 37.037 0.00 0.00 0.00 3.07
262 263 7.039784 TGGAGTACTTTTGGAGGATTTTTCATG 60.040 37.037 0.00 0.00 0.00 3.07
263 264 7.010160 TGGAGTACTTTTGGAGGATTTTTCAT 58.990 34.615 0.00 0.00 0.00 2.57
264 265 6.369629 TGGAGTACTTTTGGAGGATTTTTCA 58.630 36.000 0.00 0.00 0.00 2.69
265 266 6.894339 TGGAGTACTTTTGGAGGATTTTTC 57.106 37.500 0.00 0.00 0.00 2.29
266 267 7.497595 GTTTGGAGTACTTTTGGAGGATTTTT 58.502 34.615 0.00 0.00 0.00 1.94
267 268 6.238925 CGTTTGGAGTACTTTTGGAGGATTTT 60.239 38.462 0.00 0.00 0.00 1.82
268 269 5.240844 CGTTTGGAGTACTTTTGGAGGATTT 59.759 40.000 0.00 0.00 0.00 2.17
269 270 4.760204 CGTTTGGAGTACTTTTGGAGGATT 59.240 41.667 0.00 0.00 0.00 3.01
270 271 4.324267 CGTTTGGAGTACTTTTGGAGGAT 58.676 43.478 0.00 0.00 0.00 3.24
271 272 3.495453 CCGTTTGGAGTACTTTTGGAGGA 60.495 47.826 0.00 0.00 37.49 3.71
272 273 2.812011 CCGTTTGGAGTACTTTTGGAGG 59.188 50.000 0.00 0.00 37.49 4.30
273 274 3.735591 TCCGTTTGGAGTACTTTTGGAG 58.264 45.455 0.00 0.00 40.17 3.86
274 275 3.842007 TCCGTTTGGAGTACTTTTGGA 57.158 42.857 0.00 0.00 40.17 3.53
278 279 8.863427 AGTGCTCATTCCGTTTGGAGTACTTT 62.863 42.308 0.00 0.00 46.50 2.66
279 280 7.485760 AGTGCTCATTCCGTTTGGAGTACTT 62.486 44.000 0.00 0.00 46.50 2.24
285 286 1.071542 TCAGTGCTCATTCCGTTTGGA 59.928 47.619 0.00 0.00 44.61 3.53
286 287 1.522668 TCAGTGCTCATTCCGTTTGG 58.477 50.000 0.00 0.00 0.00 3.28
287 288 3.837213 AATCAGTGCTCATTCCGTTTG 57.163 42.857 0.00 0.00 0.00 2.93
288 289 6.582636 TCTATAATCAGTGCTCATTCCGTTT 58.417 36.000 0.00 0.00 0.00 3.60
289 290 6.161855 TCTATAATCAGTGCTCATTCCGTT 57.838 37.500 0.00 0.00 0.00 4.44
290 291 5.791336 TCTATAATCAGTGCTCATTCCGT 57.209 39.130 0.00 0.00 0.00 4.69
291 292 7.482654 TTTTCTATAATCAGTGCTCATTCCG 57.517 36.000 0.00 0.00 0.00 4.30
292 293 7.228308 AGCTTTTCTATAATCAGTGCTCATTCC 59.772 37.037 0.00 0.00 0.00 3.01
293 294 8.152309 AGCTTTTCTATAATCAGTGCTCATTC 57.848 34.615 0.00 0.00 0.00 2.67
294 295 9.618890 TTAGCTTTTCTATAATCAGTGCTCATT 57.381 29.630 0.00 0.00 0.00 2.57
295 296 9.618890 TTTAGCTTTTCTATAATCAGTGCTCAT 57.381 29.630 0.00 0.00 0.00 2.90
296 297 9.448438 TTTTAGCTTTTCTATAATCAGTGCTCA 57.552 29.630 0.00 0.00 0.00 4.26
297 298 9.928236 CTTTTAGCTTTTCTATAATCAGTGCTC 57.072 33.333 0.00 0.00 0.00 4.26
298 299 9.672673 TCTTTTAGCTTTTCTATAATCAGTGCT 57.327 29.630 0.00 0.00 0.00 4.40
326 327 9.892130 CTCTCCTAAGTTTGTATGGTTTCTTAT 57.108 33.333 0.00 0.00 0.00 1.73
327 328 7.822822 GCTCTCCTAAGTTTGTATGGTTTCTTA 59.177 37.037 0.00 0.00 0.00 2.10
328 329 6.655425 GCTCTCCTAAGTTTGTATGGTTTCTT 59.345 38.462 0.00 0.00 0.00 2.52
329 330 6.174049 GCTCTCCTAAGTTTGTATGGTTTCT 58.826 40.000 0.00 0.00 0.00 2.52
330 331 5.063564 CGCTCTCCTAAGTTTGTATGGTTTC 59.936 44.000 0.00 0.00 0.00 2.78
331 332 4.935808 CGCTCTCCTAAGTTTGTATGGTTT 59.064 41.667 0.00 0.00 0.00 3.27
332 333 4.020485 ACGCTCTCCTAAGTTTGTATGGTT 60.020 41.667 0.00 0.00 0.00 3.67
333 334 3.514309 ACGCTCTCCTAAGTTTGTATGGT 59.486 43.478 0.00 0.00 0.00 3.55
334 335 4.113354 GACGCTCTCCTAAGTTTGTATGG 58.887 47.826 0.00 0.00 0.00 2.74
335 336 5.000012 AGACGCTCTCCTAAGTTTGTATG 58.000 43.478 0.00 0.00 0.00 2.39
336 337 5.887035 ACTAGACGCTCTCCTAAGTTTGTAT 59.113 40.000 0.00 0.00 0.00 2.29
337 338 5.251764 ACTAGACGCTCTCCTAAGTTTGTA 58.748 41.667 0.00 0.00 0.00 2.41
338 339 4.080687 ACTAGACGCTCTCCTAAGTTTGT 58.919 43.478 0.00 0.00 0.00 2.83
339 340 4.705337 ACTAGACGCTCTCCTAAGTTTG 57.295 45.455 0.00 0.00 0.00 2.93
340 341 7.122353 TGAATTACTAGACGCTCTCCTAAGTTT 59.878 37.037 0.00 0.00 0.00 2.66
341 342 6.602406 TGAATTACTAGACGCTCTCCTAAGTT 59.398 38.462 0.00 0.00 0.00 2.66
342 343 6.120905 TGAATTACTAGACGCTCTCCTAAGT 58.879 40.000 0.00 0.00 0.00 2.24
343 344 6.621316 TGAATTACTAGACGCTCTCCTAAG 57.379 41.667 0.00 0.00 0.00 2.18
344 345 6.999272 AGATGAATTACTAGACGCTCTCCTAA 59.001 38.462 0.00 0.00 0.00 2.69
345 346 6.535540 AGATGAATTACTAGACGCTCTCCTA 58.464 40.000 0.00 0.00 0.00 2.94
346 347 5.381757 AGATGAATTACTAGACGCTCTCCT 58.618 41.667 0.00 0.00 0.00 3.69
347 348 5.699097 AGATGAATTACTAGACGCTCTCC 57.301 43.478 0.00 0.00 0.00 3.71
348 349 7.995463 AAAAGATGAATTACTAGACGCTCTC 57.005 36.000 0.00 0.00 0.00 3.20
349 350 9.871238 TTTAAAAGATGAATTACTAGACGCTCT 57.129 29.630 0.00 0.00 0.00 4.09
377 378 9.480053 CCTTCTTCAAATGATACACATTGTTTT 57.520 29.630 0.00 0.00 46.90 2.43
378 379 8.859090 TCCTTCTTCAAATGATACACATTGTTT 58.141 29.630 0.00 0.00 46.90 2.83
379 380 8.408043 TCCTTCTTCAAATGATACACATTGTT 57.592 30.769 0.00 0.00 46.90 2.83
380 381 8.408043 TTCCTTCTTCAAATGATACACATTGT 57.592 30.769 0.00 0.00 46.90 2.71
381 382 9.695526 TTTTCCTTCTTCAAATGATACACATTG 57.304 29.630 0.00 0.00 46.90 2.82
390 391 9.981114 GGTCTTTATTTTTCCTTCTTCAAATGA 57.019 29.630 0.00 0.00 0.00 2.57
391 392 8.915654 CGGTCTTTATTTTTCCTTCTTCAAATG 58.084 33.333 0.00 0.00 0.00 2.32
392 393 8.856103 TCGGTCTTTATTTTTCCTTCTTCAAAT 58.144 29.630 0.00 0.00 0.00 2.32
393 394 8.228035 TCGGTCTTTATTTTTCCTTCTTCAAA 57.772 30.769 0.00 0.00 0.00 2.69
394 395 7.811117 TCGGTCTTTATTTTTCCTTCTTCAA 57.189 32.000 0.00 0.00 0.00 2.69
395 396 7.883311 AGATCGGTCTTTATTTTTCCTTCTTCA 59.117 33.333 0.00 0.00 0.00 3.02
396 397 8.270080 AGATCGGTCTTTATTTTTCCTTCTTC 57.730 34.615 0.00 0.00 0.00 2.87
397 398 7.883311 TGAGATCGGTCTTTATTTTTCCTTCTT 59.117 33.333 0.00 0.00 33.97 2.52
398 399 7.394816 TGAGATCGGTCTTTATTTTTCCTTCT 58.605 34.615 0.00 0.00 33.97 2.85
399 400 7.611213 TGAGATCGGTCTTTATTTTTCCTTC 57.389 36.000 0.00 0.00 33.97 3.46
400 401 9.853177 ATATGAGATCGGTCTTTATTTTTCCTT 57.147 29.630 0.00 0.00 33.97 3.36
440 441 9.877178 GCAGCAATATAGTATGTTTACCTAGAT 57.123 33.333 0.00 0.00 0.00 1.98
441 442 8.866093 TGCAGCAATATAGTATGTTTACCTAGA 58.134 33.333 0.00 0.00 0.00 2.43
442 443 9.489084 TTGCAGCAATATAGTATGTTTACCTAG 57.511 33.333 2.83 0.00 0.00 3.02
444 445 8.924511 ATTGCAGCAATATAGTATGTTTACCT 57.075 30.769 19.53 0.00 31.77 3.08
445 446 9.612620 GAATTGCAGCAATATAGTATGTTTACC 57.387 33.333 21.15 0.00 32.43 2.85
448 449 9.903682 GATGAATTGCAGCAATATAGTATGTTT 57.096 29.630 21.15 1.95 32.43 2.83
449 450 9.293404 AGATGAATTGCAGCAATATAGTATGTT 57.707 29.630 21.15 2.72 34.69 2.71
450 451 8.859236 AGATGAATTGCAGCAATATAGTATGT 57.141 30.769 21.15 2.61 34.69 2.29
451 452 9.770503 GAAGATGAATTGCAGCAATATAGTATG 57.229 33.333 21.15 0.00 34.69 2.39
452 453 9.511272 TGAAGATGAATTGCAGCAATATAGTAT 57.489 29.630 21.15 10.75 34.69 2.12
453 454 8.907222 TGAAGATGAATTGCAGCAATATAGTA 57.093 30.769 21.15 6.61 34.69 1.82
454 455 7.812690 TGAAGATGAATTGCAGCAATATAGT 57.187 32.000 21.15 5.35 34.69 2.12
455 456 8.512138 TGATGAAGATGAATTGCAGCAATATAG 58.488 33.333 21.15 0.00 34.69 1.31
456 457 8.398878 TGATGAAGATGAATTGCAGCAATATA 57.601 30.769 21.15 13.08 34.69 0.86
457 458 7.284919 TGATGAAGATGAATTGCAGCAATAT 57.715 32.000 21.15 11.83 34.69 1.28
458 459 6.702716 TGATGAAGATGAATTGCAGCAATA 57.297 33.333 21.15 7.06 34.69 1.90
459 460 5.592104 TGATGAAGATGAATTGCAGCAAT 57.408 34.783 15.33 15.33 34.69 3.56
460 461 5.588240 GATGATGAAGATGAATTGCAGCAA 58.412 37.500 11.07 11.07 34.69 3.91
461 462 4.261031 CGATGATGAAGATGAATTGCAGCA 60.261 41.667 0.00 0.00 34.69 4.41
462 463 4.024302 TCGATGATGAAGATGAATTGCAGC 60.024 41.667 0.00 0.00 0.00 5.25
463 464 5.236695 AGTCGATGATGAAGATGAATTGCAG 59.763 40.000 0.00 0.00 0.00 4.41
464 465 5.121105 AGTCGATGATGAAGATGAATTGCA 58.879 37.500 0.00 0.00 0.00 4.08
465 466 5.235831 TGAGTCGATGATGAAGATGAATTGC 59.764 40.000 0.00 0.00 0.00 3.56
466 467 6.839820 TGAGTCGATGATGAAGATGAATTG 57.160 37.500 0.00 0.00 0.00 2.32
467 468 7.655236 GATGAGTCGATGATGAAGATGAATT 57.345 36.000 0.00 0.00 0.00 2.17
484 485 5.910637 AGATTCGAGTAGTACGATGAGTC 57.089 43.478 0.00 1.58 39.45 3.36
485 486 6.279123 TGTAGATTCGAGTAGTACGATGAGT 58.721 40.000 0.00 0.00 39.45 3.41
486 487 6.766452 TGTAGATTCGAGTAGTACGATGAG 57.234 41.667 0.00 0.00 39.45 2.90
487 488 8.999220 ATATGTAGATTCGAGTAGTACGATGA 57.001 34.615 0.00 0.00 39.45 2.92
491 492 9.423427 GCAATATATGTAGATTCGAGTAGTACG 57.577 37.037 0.00 0.00 0.00 3.67
494 495 9.794685 CATGCAATATATGTAGATTCGAGTAGT 57.205 33.333 0.00 0.00 0.00 2.73
495 496 9.794685 ACATGCAATATATGTAGATTCGAGTAG 57.205 33.333 0.00 0.00 37.02 2.57
497 498 9.494271 AAACATGCAATATATGTAGATTCGAGT 57.506 29.630 0.00 0.00 37.77 4.18
504 505 8.229811 GCGATGAAAACATGCAATATATGTAGA 58.770 33.333 0.00 0.00 37.77 2.59
505 506 7.482743 GGCGATGAAAACATGCAATATATGTAG 59.517 37.037 0.00 0.00 37.77 2.74
506 507 7.174772 AGGCGATGAAAACATGCAATATATGTA 59.825 33.333 0.00 0.00 37.77 2.29
507 508 6.016024 AGGCGATGAAAACATGCAATATATGT 60.016 34.615 0.00 0.00 40.30 2.29
508 509 6.384224 AGGCGATGAAAACATGCAATATATG 58.616 36.000 0.00 0.00 0.00 1.78
509 510 6.579666 AGGCGATGAAAACATGCAATATAT 57.420 33.333 0.00 0.00 0.00 0.86
510 511 6.347321 CGTAGGCGATGAAAACATGCAATATA 60.347 38.462 0.00 0.00 41.33 0.86
511 512 4.924305 AGGCGATGAAAACATGCAATAT 57.076 36.364 0.00 0.00 0.00 1.28
512 513 4.260579 CGTAGGCGATGAAAACATGCAATA 60.261 41.667 0.00 0.00 41.33 1.90
513 514 3.487376 CGTAGGCGATGAAAACATGCAAT 60.487 43.478 0.00 0.00 41.33 3.56
514 515 2.159585 CGTAGGCGATGAAAACATGCAA 60.160 45.455 0.00 0.00 41.33 4.08
515 516 1.396648 CGTAGGCGATGAAAACATGCA 59.603 47.619 0.00 0.00 41.33 3.96
516 517 1.663643 TCGTAGGCGATGAAAACATGC 59.336 47.619 0.00 0.00 42.81 4.06
517 518 2.285220 CCTCGTAGGCGATGAAAACATG 59.715 50.000 0.00 0.00 46.80 3.21
518 519 2.093658 ACCTCGTAGGCGATGAAAACAT 60.094 45.455 0.00 0.00 46.80 2.71
519 520 1.274167 ACCTCGTAGGCGATGAAAACA 59.726 47.619 0.00 0.00 46.80 2.83
520 521 1.659098 CACCTCGTAGGCGATGAAAAC 59.341 52.381 0.00 0.00 46.80 2.43
521 522 2.004583 CACCTCGTAGGCGATGAAAA 57.995 50.000 0.00 0.00 46.80 2.29
522 523 0.459585 GCACCTCGTAGGCGATGAAA 60.460 55.000 0.00 0.00 46.80 2.69
523 524 1.141019 GCACCTCGTAGGCGATGAA 59.859 57.895 0.00 0.00 46.80 2.57
524 525 2.805546 GCACCTCGTAGGCGATGA 59.194 61.111 0.00 0.00 46.80 2.92
557 558 8.978874 ACACCTTGCACAATATATTGAGATTA 57.021 30.769 28.13 10.49 40.14 1.75
563 564 9.663904 GTAACATACACCTTGCACAATATATTG 57.336 33.333 21.42 21.42 43.26 1.90
566 567 8.835439 CATGTAACATACACCTTGCACAATATA 58.165 33.333 0.00 0.00 42.23 0.86
569 570 5.105797 CCATGTAACATACACCTTGCACAAT 60.106 40.000 0.00 0.00 42.23 2.71
571 572 3.755905 CCATGTAACATACACCTTGCACA 59.244 43.478 0.00 0.00 42.23 4.57
574 575 3.016736 AGCCATGTAACATACACCTTGC 58.983 45.455 0.00 0.00 42.23 4.01
576 577 3.016736 GCAGCCATGTAACATACACCTT 58.983 45.455 0.00 0.00 42.23 3.50
577 578 2.643551 GCAGCCATGTAACATACACCT 58.356 47.619 0.00 0.00 42.23 4.00
578 579 1.330521 CGCAGCCATGTAACATACACC 59.669 52.381 0.00 0.00 42.23 4.16
579 580 2.006888 ACGCAGCCATGTAACATACAC 58.993 47.619 0.00 0.00 42.23 2.90
581 582 2.006888 ACACGCAGCCATGTAACATAC 58.993 47.619 0.00 0.00 0.00 2.39
582 583 2.006169 CACACGCAGCCATGTAACATA 58.994 47.619 0.00 0.00 0.00 2.29
585 586 0.443869 CTCACACGCAGCCATGTAAC 59.556 55.000 0.00 0.00 0.00 2.50
586 587 0.034756 ACTCACACGCAGCCATGTAA 59.965 50.000 0.00 0.00 0.00 2.41
587 588 0.670239 CACTCACACGCAGCCATGTA 60.670 55.000 0.00 0.00 0.00 2.29
588 589 1.962822 CACTCACACGCAGCCATGT 60.963 57.895 0.00 0.00 0.00 3.21
589 590 0.670239 TACACTCACACGCAGCCATG 60.670 55.000 0.00 0.00 0.00 3.66
590 591 0.250234 ATACACTCACACGCAGCCAT 59.750 50.000 0.00 0.00 0.00 4.40
591 592 0.670239 CATACACTCACACGCAGCCA 60.670 55.000 0.00 0.00 0.00 4.75
592 593 0.670546 ACATACACTCACACGCAGCC 60.671 55.000 0.00 0.00 0.00 4.85
594 595 0.439985 GCACATACACTCACACGCAG 59.560 55.000 0.00 0.00 0.00 5.18
598 599 1.459592 GGAACGCACATACACTCACAC 59.540 52.381 0.00 0.00 0.00 3.82
616 617 7.164803 TCATACAATCACACATGTTTACAGGA 58.835 34.615 0.00 0.00 0.00 3.86
617 618 7.376435 TCATACAATCACACATGTTTACAGG 57.624 36.000 0.00 0.00 0.00 4.00
618 619 9.281075 CAATCATACAATCACACATGTTTACAG 57.719 33.333 0.00 0.00 0.00 2.74
624 625 7.607607 ACAGTACAATCATACAATCACACATGT 59.392 33.333 0.00 0.00 0.00 3.21
627 628 6.934083 ACACAGTACAATCATACAATCACACA 59.066 34.615 0.00 0.00 0.00 3.72
639 640 8.952278 AGTTTTTCTTTACACACAGTACAATCA 58.048 29.630 0.00 0.00 30.91 2.57
640 641 9.221775 CAGTTTTTCTTTACACACAGTACAATC 57.778 33.333 0.00 0.00 30.91 2.67
641 642 8.952278 TCAGTTTTTCTTTACACACAGTACAAT 58.048 29.630 0.00 0.00 30.91 2.71
642 643 8.231837 GTCAGTTTTTCTTTACACACAGTACAA 58.768 33.333 0.00 0.00 30.91 2.41
643 644 7.412129 CGTCAGTTTTTCTTTACACACAGTACA 60.412 37.037 0.00 0.00 30.91 2.90
644 645 6.898189 CGTCAGTTTTTCTTTACACACAGTAC 59.102 38.462 0.00 0.00 30.91 2.73
645 646 6.591062 ACGTCAGTTTTTCTTTACACACAGTA 59.409 34.615 0.00 0.00 0.00 2.74
646 647 5.410439 ACGTCAGTTTTTCTTTACACACAGT 59.590 36.000 0.00 0.00 0.00 3.55
647 648 5.732647 CACGTCAGTTTTTCTTTACACACAG 59.267 40.000 0.00 0.00 0.00 3.66
648 649 5.408909 TCACGTCAGTTTTTCTTTACACACA 59.591 36.000 0.00 0.00 0.00 3.72
649 650 5.860641 TCACGTCAGTTTTTCTTTACACAC 58.139 37.500 0.00 0.00 0.00 3.82
661 662 3.655276 ACGGACTTATCACGTCAGTTT 57.345 42.857 0.00 0.00 36.62 2.66
674 675 2.165167 TGGACGTGATTAGACGGACTT 58.835 47.619 0.00 0.00 43.84 3.01
675 676 1.830279 TGGACGTGATTAGACGGACT 58.170 50.000 0.00 0.00 43.84 3.85
734 735 0.597072 GGACGGACGGAGGACATATC 59.403 60.000 0.00 0.00 0.00 1.63
820 823 3.371063 GGCCTCCACGTCAGTCGA 61.371 66.667 0.00 0.00 42.86 4.20
842 845 0.248134 TTCGTTTTTCGTTGGTGGCG 60.248 50.000 0.00 0.00 40.80 5.69
858 861 1.000145 GCGGTTAGGCTTCTCTTTCG 59.000 55.000 0.00 0.00 0.00 3.46
859 862 2.388310 AGCGGTTAGGCTTCTCTTTC 57.612 50.000 0.00 0.00 41.39 2.62
984 987 2.997315 GCTGGGGGTTTGGGCTTC 60.997 66.667 0.00 0.00 0.00 3.86
996 1003 3.737972 GCGGAAAGGATTATTTTGCTGGG 60.738 47.826 0.00 0.00 0.00 4.45
1007 1014 3.019564 CTGATGGAAAGCGGAAAGGATT 58.980 45.455 0.00 0.00 0.00 3.01
1011 1018 0.453390 GGCTGATGGAAAGCGGAAAG 59.547 55.000 0.00 0.00 41.78 2.62
1111 1122 1.962822 GAACGGGAAACGGTGTCCC 60.963 63.158 24.35 24.35 46.88 4.46
1128 1158 4.351938 CGTGACGTCCTTGCGGGA 62.352 66.667 14.12 0.00 42.77 5.14
1157 1187 1.269051 GGTTTTCTGTTCTGTTGCGGG 60.269 52.381 0.00 0.00 0.00 6.13
1478 1511 1.521681 GAACGCCTTCATCTCCCCG 60.522 63.158 0.00 0.00 0.00 5.73
1784 1817 2.510800 GAGGTGTAGGAGAGGAGTAGGT 59.489 54.545 0.00 0.00 0.00 3.08
1793 1826 3.458857 AGAGGAATACGAGGTGTAGGAGA 59.541 47.826 0.00 0.00 36.25 3.71
1794 1827 3.816523 GAGAGGAATACGAGGTGTAGGAG 59.183 52.174 0.00 0.00 36.25 3.69
1795 1828 3.743584 CGAGAGGAATACGAGGTGTAGGA 60.744 52.174 0.00 0.00 36.25 2.94
1796 1829 2.548904 CGAGAGGAATACGAGGTGTAGG 59.451 54.545 0.00 0.00 36.25 3.18
1797 1830 3.881780 CGAGAGGAATACGAGGTGTAG 57.118 52.381 0.00 0.00 36.25 2.74
1838 1871 2.826128 AGCTACGTTGAGAGGTTCATGA 59.174 45.455 0.00 0.00 35.27 3.07
1841 1874 3.299340 GAAGCTACGTTGAGAGGTTCA 57.701 47.619 18.42 0.00 45.33 3.18
1887 1920 6.545298 GGCAACCTAACTAGCTACTTCTAGTA 59.455 42.308 4.15 0.00 46.12 1.82
1889 1922 5.834169 GGCAACCTAACTAGCTACTTCTAG 58.166 45.833 0.00 0.00 41.31 2.43
1890 1923 5.848833 GGCAACCTAACTAGCTACTTCTA 57.151 43.478 0.00 0.00 0.00 2.10
1985 2036 3.306710 CGCCCACAGTATATGCTTCCATA 60.307 47.826 0.00 0.00 38.25 2.74
1987 2038 1.202639 CGCCCACAGTATATGCTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
1997 2048 0.037590 AAAATCAGCCGCCCACAGTA 59.962 50.000 0.00 0.00 0.00 2.74
1998 2049 0.827507 AAAAATCAGCCGCCCACAGT 60.828 50.000 0.00 0.00 0.00 3.55
2158 2222 1.525077 GGGACAACAGCACGAACCA 60.525 57.895 0.00 0.00 0.00 3.67
2167 2231 4.687464 GGTGTACCGGGACAACAG 57.313 61.111 30.61 0.00 36.99 3.16
2240 2308 6.765036 CAGAAATCAAGCATCTACTACACCAT 59.235 38.462 0.00 0.00 0.00 3.55
2255 2323 4.491676 CATCAACCCAAGCAGAAATCAAG 58.508 43.478 0.00 0.00 0.00 3.02
2425 2497 1.273327 GCAAATCAAACAGTGGGAGGG 59.727 52.381 0.00 0.00 0.00 4.30
2564 2658 4.918810 AACCCAGTCAAAGTTTTGCTAG 57.081 40.909 0.00 0.00 38.05 3.42
2572 2666 4.600111 TCCCTACATAAACCCAGTCAAAGT 59.400 41.667 0.00 0.00 0.00 2.66
2589 2683 7.166691 TGTAGACATAGACTGTTTTCCCTAC 57.833 40.000 0.00 0.00 38.54 3.18
2601 2695 8.141909 TGTATGCTTGGTATTGTAGACATAGAC 58.858 37.037 0.00 0.00 0.00 2.59
2606 2700 6.538945 TCTGTATGCTTGGTATTGTAGACA 57.461 37.500 0.00 0.00 0.00 3.41
2607 2701 9.712305 ATATTCTGTATGCTTGGTATTGTAGAC 57.288 33.333 0.00 0.00 0.00 2.59
2643 2737 4.342772 GCATCAATGGACACGTTATGAAC 58.657 43.478 0.00 0.00 0.00 3.18
2644 2738 3.063316 CGCATCAATGGACACGTTATGAA 59.937 43.478 0.00 0.00 0.00 2.57
2654 2748 1.302366 TCAGATGCGCATCAATGGAC 58.698 50.000 42.35 21.62 40.22 4.02
2665 2759 8.711457 TCATGTACATTTATAACATCAGATGCG 58.289 33.333 10.59 0.00 31.60 4.73
2814 2911 6.072508 ACACATAATACACTGCACTTTTCAGG 60.073 38.462 0.00 0.00 35.94 3.86
2870 2967 7.925993 ACGATCTTTTTCAGATGTGTGTTTTA 58.074 30.769 0.00 0.00 42.92 1.52
2875 2972 8.412608 AGTATACGATCTTTTTCAGATGTGTG 57.587 34.615 0.00 0.00 42.92 3.82
2892 2989 9.320352 TGCAATCTAAAAATAGCAAGTATACGA 57.680 29.630 0.00 0.00 0.00 3.43
3038 3138 6.015504 GGATACAATAATATTGCACTTCGCG 58.984 40.000 12.50 0.00 46.97 5.87
3076 3176 5.861222 AGTTTTTGCAAAAGTTTCCACTG 57.139 34.783 22.78 0.00 31.60 3.66
3367 3470 0.975040 AAAGTGGTGGTTGGCTGCAA 60.975 50.000 0.50 0.00 0.00 4.08
3661 3766 5.590530 TTACAATTGTTGCACTTTCTGGT 57.409 34.783 17.78 0.00 0.00 4.00
3837 3943 1.740025 GCTGAAGCAATCTGGTGGTAC 59.260 52.381 0.00 0.00 41.59 3.34
3867 3973 3.309296 TCGAGAGCTAAAATCCCATCCT 58.691 45.455 0.00 0.00 0.00 3.24
3984 4090 7.068103 TGGTACACATTATGATTTTGATCCCAC 59.932 37.037 0.00 0.00 0.00 4.61
4085 4203 5.163290 TGTGTTCAAGTCCACAGGTATAACA 60.163 40.000 0.00 0.00 36.70 2.41
4192 4310 4.081642 CCAAGCTAAGGTGTAGCAGAGTAA 60.082 45.833 8.00 0.00 42.68 2.24
4195 4313 2.497675 TCCAAGCTAAGGTGTAGCAGAG 59.502 50.000 8.00 0.00 42.68 3.35
4197 4315 3.055819 TCTTCCAAGCTAAGGTGTAGCAG 60.056 47.826 8.00 0.54 42.68 4.24
4315 4456 3.415212 TGCCTTCTCTCCAATGAGTTTG 58.585 45.455 0.00 0.00 39.75 2.93
4316 4457 3.795688 TGCCTTCTCTCCAATGAGTTT 57.204 42.857 0.00 0.00 39.75 2.66
4721 4864 9.358872 CATGCTGCTAGATATTATACTTTTCGA 57.641 33.333 0.00 0.00 0.00 3.71
4900 5044 0.678048 GGACAGACCAACCCTGATGC 60.678 60.000 0.00 0.00 38.79 3.91
5263 5407 5.013704 AGTCCATACCTGTGGTTTGTATTCA 59.986 40.000 6.47 0.00 40.27 2.57
5297 5441 3.190744 CGAAGGGCTTTTACTTTCCTTCC 59.809 47.826 12.90 0.00 46.36 3.46
5301 5445 4.202080 ACAAACGAAGGGCTTTTACTTTCC 60.202 41.667 0.00 0.00 0.00 3.13
5413 5557 3.696548 ACTAGCAAAATTAGAGCCTTGGC 59.303 43.478 2.97 2.97 0.00 4.52
5443 5587 5.471556 TGGTAGTATTTGTGGTTTCGAGA 57.528 39.130 0.00 0.00 0.00 4.04
5447 5591 6.644248 AACCTTGGTAGTATTTGTGGTTTC 57.356 37.500 0.00 0.00 33.38 2.78
5471 5615 4.102367 AGGAAACAAGGCTGGCAAAATTAA 59.898 37.500 3.38 0.00 0.00 1.40
5510 5654 4.141111 GGTAGTTGGAGGAGGAGATACTCT 60.141 50.000 0.00 0.00 39.12 3.24
5686 5832 4.380678 CGTGTGCACATTTTTCTTCTGATG 59.619 41.667 24.69 0.00 0.00 3.07
5718 5864 2.289945 GGCATGTAGGGCTCTTCCATAG 60.290 54.545 0.00 0.00 36.21 2.23
5736 5883 3.701040 GGCTCTTCCATAGATTTTTGGCA 59.299 43.478 0.00 0.00 32.80 4.92
5759 5906 6.264067 AGTTGCTTAAGAAAGTTCAGCAGAAT 59.736 34.615 6.67 0.00 41.38 2.40
5853 6000 7.835160 AACGTTAGTTACAGCAAAGAGCAACA 61.835 38.462 0.00 0.00 42.01 3.33
5865 6012 3.732721 GCCGGCTATAACGTTAGTTACAG 59.267 47.826 22.15 6.71 44.62 2.74
5875 6022 0.526954 ACAGTTCGCCGGCTATAACG 60.527 55.000 26.68 20.55 0.00 3.18
5910 6057 3.722082 GCGTAAACAGCAGAAGAATGTCG 60.722 47.826 0.00 0.00 34.19 4.35
5912 6059 3.403038 AGCGTAAACAGCAGAAGAATGT 58.597 40.909 0.00 0.00 37.01 2.71
5931 6078 2.924290 CTCGTACAAGGTTGCTTAGAGC 59.076 50.000 0.00 0.00 42.82 4.09
5981 6128 6.704493 TCACTCTGTACCACAAGAATGTAAAC 59.296 38.462 0.00 0.00 37.82 2.01
6071 6218 2.675348 GTCCACAGACTGAGCTTAATGC 59.325 50.000 10.08 0.00 40.10 3.56
6096 6271 4.796038 ATCCAGGTTCAGCAAATTTCAG 57.204 40.909 0.00 0.00 0.00 3.02
6154 6330 7.335171 GGGTAATAGTAATCAAACAGGTTCGTT 59.665 37.037 0.00 0.00 0.00 3.85
6211 6387 9.807649 GATTACAAATTGCATGAAAATCCTACT 57.192 29.630 0.00 0.00 0.00 2.57
6212 6388 9.585099 TGATTACAAATTGCATGAAAATCCTAC 57.415 29.630 0.00 0.00 0.00 3.18
6250 6426 5.163713 CCAAAAGTTCACTTATAGGAGCTGC 60.164 44.000 0.00 0.00 34.61 5.25
6254 6430 5.880887 GGGACCAAAAGTTCACTTATAGGAG 59.119 44.000 10.37 0.00 34.61 3.69
6266 6447 4.832823 CCATTAGTTGAGGGACCAAAAGTT 59.167 41.667 0.00 0.00 0.00 2.66
6359 6540 7.028926 ACCAGTAACTCTGTCTCATAATACG 57.971 40.000 0.00 0.00 42.19 3.06
6459 6647 6.454981 GCGTGATTATATATGCATGTGCGTTA 60.455 38.462 10.16 0.00 45.83 3.18
6533 6721 8.751335 TGATGTTTTGATCGCTTTAAAGTTTTC 58.249 29.630 16.38 10.67 0.00 2.29
6541 6729 8.242739 TCATTTCATGATGTTTTGATCGCTTTA 58.757 29.630 0.00 0.00 33.59 1.85
6562 6750 5.256474 AGGAGTCGATGAACCAAATCATTT 58.744 37.500 0.00 0.00 40.08 2.32
6601 6789 2.036346 GAGCAAGGCATTTGAAGTTGGT 59.964 45.455 4.54 0.00 39.21 3.67
6610 6798 1.340405 ACCTCATCGAGCAAGGCATTT 60.340 47.619 9.73 0.00 33.21 2.32
6649 6837 3.593442 TTTCATCAAGAGGGTTGGTGT 57.407 42.857 0.00 0.00 32.61 4.16
6710 6898 0.830648 CACCTTTATCGCCTCCCTCA 59.169 55.000 0.00 0.00 0.00 3.86
6739 6928 2.357881 CAGCACTGAAGCGAGCCA 60.358 61.111 0.00 0.00 40.15 4.75
6766 6955 2.423088 CCAGATCCGTAGACCACCTAGT 60.423 54.545 0.00 0.00 0.00 2.57
6896 7085 4.451629 TTTTGGTTGCCGTCTTTAAACA 57.548 36.364 0.00 0.00 0.00 2.83
6939 7129 0.033366 GGTGGCGTGCCTTTTGAAAT 59.967 50.000 12.84 0.00 36.94 2.17
6952 7142 4.003648 ACTTCTTTAGAGAAATGGTGGCG 58.996 43.478 0.00 0.00 41.19 5.69
6953 7143 7.448748 TTTACTTCTTTAGAGAAATGGTGGC 57.551 36.000 0.00 0.00 41.19 5.01
6954 7144 9.846248 CAATTTACTTCTTTAGAGAAATGGTGG 57.154 33.333 0.00 0.00 41.19 4.61
6955 7145 9.846248 CCAATTTACTTCTTTAGAGAAATGGTG 57.154 33.333 0.00 0.00 41.19 4.17
6956 7146 9.025041 CCCAATTTACTTCTTTAGAGAAATGGT 57.975 33.333 0.00 0.00 41.19 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.