Multiple sequence alignment - TraesCS1A01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G181700 chr1A 100.000 2933 0 0 1 2933 327714477 327711545 0.000000e+00 5417
1 TraesCS1A01G181700 chr1A 95.435 2278 96 4 661 2933 561407392 561405118 0.000000e+00 3624
2 TraesCS1A01G181700 chr1A 95.904 293 9 2 661 953 327706385 327706096 3.420000e-129 472
3 TraesCS1A01G181700 chr4A 94.476 2281 70 8 659 2933 125038526 125036296 0.000000e+00 3463
4 TraesCS1A01G181700 chr4A 91.192 2282 151 25 662 2930 621705814 621708058 0.000000e+00 3055
5 TraesCS1A01G181700 chr7B 93.167 2283 138 13 661 2933 648721063 648718789 0.000000e+00 3336
6 TraesCS1A01G181700 chr5A 92.948 2283 145 11 657 2930 649442262 649444537 0.000000e+00 3310
7 TraesCS1A01G181700 chr7A 93.067 2279 131 17 661 2930 17110603 17112863 0.000000e+00 3308
8 TraesCS1A01G181700 chr7A 85.047 321 35 8 277 586 196465063 196465381 6.100000e-82 315
9 TraesCS1A01G181700 chr2A 93.035 2283 125 12 659 2933 12904850 12902594 0.000000e+00 3304
10 TraesCS1A01G181700 chr2A 91.717 1980 136 16 967 2933 677222416 677220452 0.000000e+00 2723
11 TraesCS1A01G181700 chr2A 95.978 1467 52 4 1472 2933 70125564 70124100 0.000000e+00 2375
12 TraesCS1A01G181700 chr2A 95.712 793 31 2 661 1452 70134931 70134141 0.000000e+00 1273
13 TraesCS1A01G181700 chr2A 91.480 446 31 6 219 660 440542606 440543048 8.990000e-170 606
14 TraesCS1A01G181700 chr2A 92.793 111 7 1 546 655 132123269 132123379 3.030000e-35 159
15 TraesCS1A01G181700 chr3D 93.886 1014 55 5 1921 2930 35718570 35719580 0.000000e+00 1522
16 TraesCS1A01G181700 chr3D 86.393 463 33 9 1 433 555888308 555888770 2.040000e-131 479
17 TraesCS1A01G181700 chr6B 81.009 1864 279 55 1105 2933 227089588 227087765 0.000000e+00 1411
18 TraesCS1A01G181700 chr1B 77.035 958 166 37 991 1924 9481998 9481071 4.360000e-138 501
19 TraesCS1A01G181700 chr3B 90.078 383 32 4 284 660 286865495 286865877 2.630000e-135 492
20 TraesCS1A01G181700 chr3B 85.529 463 37 8 1 433 498004492 498004954 9.580000e-125 457
21 TraesCS1A01G181700 chr3B 89.498 219 23 0 1 219 286856780 286856998 8.010000e-71 278
22 TraesCS1A01G181700 chr7D 86.393 463 33 10 1 433 252399526 252399988 2.040000e-131 479
23 TraesCS1A01G181700 chr7D 91.343 335 26 2 661 994 168818006 168817674 3.450000e-124 455
24 TraesCS1A01G181700 chr7D 84.665 463 29 12 1 433 46114189 46114639 9.720000e-115 424
25 TraesCS1A01G181700 chr7D 89.206 315 28 5 277 586 74779498 74779185 3.540000e-104 388
26 TraesCS1A01G181700 chr2B 86.393 463 31 15 1 432 462986661 462987122 7.350000e-131 477
27 TraesCS1A01G181700 chr2B 89.602 327 31 3 336 660 636976902 636977227 2.100000e-111 412
28 TraesCS1A01G181700 chr2B 86.944 360 19 8 1 338 383451234 383451587 2.130000e-101 379
29 TraesCS1A01G181700 chr4D 86.207 464 33 11 1 433 365161499 365161962 9.510000e-130 473
30 TraesCS1A01G181700 chr2D 89.206 315 28 5 277 586 487210651 487210338 3.540000e-104 388
31 TraesCS1A01G181700 chr2D 87.727 220 24 3 1 219 487211129 487210912 1.350000e-63 254
32 TraesCS1A01G181700 chr5D 88.889 315 29 5 277 586 441855689 441855376 1.650000e-102 383
33 TraesCS1A01G181700 chr5B 86.957 322 37 3 297 614 172367253 172367573 1.000000e-94 357
34 TraesCS1A01G181700 chr3A 86.392 316 34 7 277 586 144968849 144969161 1.300000e-88 337


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G181700 chr1A 327711545 327714477 2932 True 5417 5417 100.0000 1 2933 1 chr1A.!!$R2 2932
1 TraesCS1A01G181700 chr1A 561405118 561407392 2274 True 3624 3624 95.4350 661 2933 1 chr1A.!!$R3 2272
2 TraesCS1A01G181700 chr4A 125036296 125038526 2230 True 3463 3463 94.4760 659 2933 1 chr4A.!!$R1 2274
3 TraesCS1A01G181700 chr4A 621705814 621708058 2244 False 3055 3055 91.1920 662 2930 1 chr4A.!!$F1 2268
4 TraesCS1A01G181700 chr7B 648718789 648721063 2274 True 3336 3336 93.1670 661 2933 1 chr7B.!!$R1 2272
5 TraesCS1A01G181700 chr5A 649442262 649444537 2275 False 3310 3310 92.9480 657 2930 1 chr5A.!!$F1 2273
6 TraesCS1A01G181700 chr7A 17110603 17112863 2260 False 3308 3308 93.0670 661 2930 1 chr7A.!!$F1 2269
7 TraesCS1A01G181700 chr2A 12902594 12904850 2256 True 3304 3304 93.0350 659 2933 1 chr2A.!!$R1 2274
8 TraesCS1A01G181700 chr2A 677220452 677222416 1964 True 2723 2723 91.7170 967 2933 1 chr2A.!!$R4 1966
9 TraesCS1A01G181700 chr2A 70124100 70125564 1464 True 2375 2375 95.9780 1472 2933 1 chr2A.!!$R2 1461
10 TraesCS1A01G181700 chr2A 70134141 70134931 790 True 1273 1273 95.7120 661 1452 1 chr2A.!!$R3 791
11 TraesCS1A01G181700 chr3D 35718570 35719580 1010 False 1522 1522 93.8860 1921 2930 1 chr3D.!!$F1 1009
12 TraesCS1A01G181700 chr6B 227087765 227089588 1823 True 1411 1411 81.0090 1105 2933 1 chr6B.!!$R1 1828
13 TraesCS1A01G181700 chr1B 9481071 9481998 927 True 501 501 77.0350 991 1924 1 chr1B.!!$R1 933
14 TraesCS1A01G181700 chr2D 487210338 487211129 791 True 321 388 88.4665 1 586 2 chr2D.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.031994 ACAATTCTGCAACGCCAACC 59.968 50.0 0.00 0.0 0.00 3.77 F
516 517 0.098376 CGCTCTGAGCAGCCATTTTC 59.902 55.0 27.46 0.0 42.58 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1372 0.904649 ATGGTCAAGACAGATGGCGA 59.095 50.0 2.29 0.0 0.0 5.54 R
2000 2279 0.984230 TCTCCGCCACTTCCAATTCT 59.016 50.0 0.00 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.230664 TTGGACACCCTGCAAGTCT 58.769 52.632 7.79 0.00 32.98 3.24
52 53 4.436242 TCGAAGCTACTGTTTACTCCAG 57.564 45.455 0.00 0.00 36.01 3.86
54 55 3.192844 CGAAGCTACTGTTTACTCCAGGA 59.807 47.826 0.00 0.00 34.16 3.86
55 56 4.675671 CGAAGCTACTGTTTACTCCAGGAG 60.676 50.000 15.72 15.72 42.74 3.69
71 72 3.204526 CAGGAGGAGATCAAAGACATGC 58.795 50.000 0.00 0.00 0.00 4.06
75 76 4.012374 GAGGAGATCAAAGACATGCCAAA 58.988 43.478 0.00 0.00 0.00 3.28
96 97 2.586258 ACTCCCGTCAAGATCAATCG 57.414 50.000 0.00 0.00 0.00 3.34
106 107 6.202379 CCGTCAAGATCAATCGAGTAGTACTA 59.798 42.308 1.88 0.00 0.00 1.82
116 117 9.774413 TCAATCGAGTAGTACTACTATTCATCA 57.226 33.333 30.80 12.93 45.63 3.07
122 123 9.563748 GAGTAGTACTACTATTCATCAGGAAGT 57.436 37.037 30.80 7.63 45.63 3.01
123 124 9.344772 AGTAGTACTACTATTCATCAGGAAGTG 57.655 37.037 29.96 0.00 43.98 3.16
134 135 0.957395 CAGGAAGTGATGCTGGCGTT 60.957 55.000 0.00 0.00 43.29 4.84
168 169 0.309612 CGCAGCCAAAACGTAAAGGT 59.690 50.000 0.00 0.00 0.00 3.50
169 170 1.662026 CGCAGCCAAAACGTAAAGGTC 60.662 52.381 0.00 0.00 0.00 3.85
173 174 3.794564 CAGCCAAAACGTAAAGGTCAAAC 59.205 43.478 0.00 0.00 0.00 2.93
192 193 4.351938 TCAACACGGCTCGGACGG 62.352 66.667 4.20 0.00 39.02 4.79
203 204 1.265905 GCTCGGACGGTTTGTTCAAAT 59.734 47.619 1.33 0.00 0.00 2.32
205 206 2.546368 CTCGGACGGTTTGTTCAAATCA 59.454 45.455 8.85 0.00 0.00 2.57
215 216 1.202758 TGTTCAAATCAGCCACGACCT 60.203 47.619 0.00 0.00 0.00 3.85
216 217 1.197721 GTTCAAATCAGCCACGACCTG 59.802 52.381 0.00 0.00 0.00 4.00
217 218 0.321564 TCAAATCAGCCACGACCTGG 60.322 55.000 0.00 0.00 44.08 4.45
218 219 0.321564 CAAATCAGCCACGACCTGGA 60.322 55.000 0.00 0.00 43.95 3.86
219 220 0.321653 AAATCAGCCACGACCTGGAC 60.322 55.000 0.00 0.00 43.95 4.02
220 221 1.194781 AATCAGCCACGACCTGGACT 61.195 55.000 0.00 0.00 43.95 3.85
221 222 1.608717 ATCAGCCACGACCTGGACTC 61.609 60.000 0.00 0.00 43.95 3.36
222 223 3.374402 AGCCACGACCTGGACTCG 61.374 66.667 0.00 2.42 43.95 4.18
223 224 4.436998 GCCACGACCTGGACTCGG 62.437 72.222 10.87 4.43 43.95 4.63
224 225 2.675423 CCACGACCTGGACTCGGA 60.675 66.667 10.87 0.00 43.95 4.55
225 226 2.567049 CACGACCTGGACTCGGAC 59.433 66.667 10.87 0.00 35.37 4.79
226 227 2.114625 ACGACCTGGACTCGGACA 59.885 61.111 10.87 0.00 35.37 4.02
227 228 1.529948 ACGACCTGGACTCGGACAA 60.530 57.895 10.87 0.00 35.37 3.18
228 229 0.898789 ACGACCTGGACTCGGACAAT 60.899 55.000 10.87 0.00 35.37 2.71
229 230 0.246635 CGACCTGGACTCGGACAATT 59.753 55.000 0.00 0.00 0.00 2.32
230 231 1.736032 CGACCTGGACTCGGACAATTC 60.736 57.143 0.00 0.00 0.00 2.17
231 232 1.550976 GACCTGGACTCGGACAATTCT 59.449 52.381 0.00 0.00 0.00 2.40
232 233 1.276421 ACCTGGACTCGGACAATTCTG 59.724 52.381 0.00 0.00 0.00 3.02
233 234 1.363744 CTGGACTCGGACAATTCTGC 58.636 55.000 0.00 0.00 0.00 4.26
234 235 0.684535 TGGACTCGGACAATTCTGCA 59.315 50.000 0.00 0.00 0.00 4.41
235 236 1.071542 TGGACTCGGACAATTCTGCAA 59.928 47.619 0.00 0.00 0.00 4.08
236 237 1.464997 GGACTCGGACAATTCTGCAAC 59.535 52.381 0.00 0.00 0.00 4.17
237 238 1.126846 GACTCGGACAATTCTGCAACG 59.873 52.381 0.00 0.00 0.00 4.10
238 239 0.179215 CTCGGACAATTCTGCAACGC 60.179 55.000 0.00 0.00 0.00 4.84
239 240 1.154225 CGGACAATTCTGCAACGCC 60.154 57.895 0.00 0.00 0.00 5.68
240 241 1.851021 CGGACAATTCTGCAACGCCA 61.851 55.000 0.00 0.00 0.00 5.69
241 242 0.313672 GGACAATTCTGCAACGCCAA 59.686 50.000 0.00 0.00 0.00 4.52
242 243 1.408422 GACAATTCTGCAACGCCAAC 58.592 50.000 0.00 0.00 0.00 3.77
243 244 0.031994 ACAATTCTGCAACGCCAACC 59.968 50.000 0.00 0.00 0.00 3.77
244 245 0.314935 CAATTCTGCAACGCCAACCT 59.685 50.000 0.00 0.00 0.00 3.50
245 246 0.598065 AATTCTGCAACGCCAACCTC 59.402 50.000 0.00 0.00 0.00 3.85
246 247 1.577328 ATTCTGCAACGCCAACCTCG 61.577 55.000 0.00 0.00 0.00 4.63
247 248 4.389576 CTGCAACGCCAACCTCGC 62.390 66.667 0.00 0.00 0.00 5.03
255 256 3.710722 CCAACCTCGCCCTGAGCT 61.711 66.667 0.00 0.00 43.82 4.09
256 257 2.435586 CAACCTCGCCCTGAGCTG 60.436 66.667 0.00 0.00 43.82 4.24
257 258 4.400961 AACCTCGCCCTGAGCTGC 62.401 66.667 0.00 0.00 43.82 5.25
260 261 4.172512 CTCGCCCTGAGCTGCCAT 62.173 66.667 0.00 0.00 38.03 4.40
261 262 2.763710 TCGCCCTGAGCTGCCATA 60.764 61.111 0.00 0.00 40.39 2.74
262 263 2.590007 CGCCCTGAGCTGCCATAC 60.590 66.667 0.00 0.00 40.39 2.39
263 264 2.590007 GCCCTGAGCTGCCATACG 60.590 66.667 0.00 0.00 38.99 3.06
264 265 2.590007 CCCTGAGCTGCCATACGC 60.590 66.667 0.00 0.00 38.31 4.42
265 266 2.503061 CCTGAGCTGCCATACGCT 59.497 61.111 0.00 0.00 39.61 5.07
266 267 1.886313 CCTGAGCTGCCATACGCTG 60.886 63.158 0.00 0.00 36.45 5.18
271 272 2.509111 CTGCCATACGCTGCGTCA 60.509 61.111 32.44 21.19 41.54 4.35
272 273 2.509111 TGCCATACGCTGCGTCAG 60.509 61.111 32.44 23.26 41.54 3.51
273 274 3.264897 GCCATACGCTGCGTCAGG 61.265 66.667 32.44 30.86 41.54 3.86
274 275 2.494445 CCATACGCTGCGTCAGGA 59.506 61.111 32.44 14.88 41.54 3.86
275 276 1.068083 CCATACGCTGCGTCAGGAT 59.932 57.895 32.44 16.67 41.54 3.24
276 277 0.313987 CCATACGCTGCGTCAGGATA 59.686 55.000 32.44 13.63 41.54 2.59
277 278 1.269569 CCATACGCTGCGTCAGGATAA 60.270 52.381 32.44 12.81 41.54 1.75
278 279 2.054363 CATACGCTGCGTCAGGATAAG 58.946 52.381 32.44 6.06 41.54 1.73
279 280 1.385528 TACGCTGCGTCAGGATAAGA 58.614 50.000 32.44 7.77 41.54 2.10
280 281 0.530744 ACGCTGCGTCAGGATAAGAA 59.469 50.000 23.57 0.00 33.69 2.52
281 282 1.137086 ACGCTGCGTCAGGATAAGAAT 59.863 47.619 23.57 0.00 33.69 2.40
282 283 1.524355 CGCTGCGTCAGGATAAGAATG 59.476 52.381 14.93 0.00 31.21 2.67
283 284 2.555199 GCTGCGTCAGGATAAGAATGT 58.445 47.619 8.57 0.00 31.21 2.71
284 285 2.286294 GCTGCGTCAGGATAAGAATGTG 59.714 50.000 8.57 0.00 31.21 3.21
285 286 2.279741 TGCGTCAGGATAAGAATGTGC 58.720 47.619 0.00 0.00 0.00 4.57
286 287 2.093500 TGCGTCAGGATAAGAATGTGCT 60.093 45.455 0.00 0.00 0.00 4.40
287 288 3.132111 TGCGTCAGGATAAGAATGTGCTA 59.868 43.478 0.00 0.00 0.00 3.49
288 289 3.738282 GCGTCAGGATAAGAATGTGCTAG 59.262 47.826 0.00 0.00 0.00 3.42
289 290 4.499865 GCGTCAGGATAAGAATGTGCTAGA 60.500 45.833 0.00 0.00 0.00 2.43
290 291 5.218885 CGTCAGGATAAGAATGTGCTAGAG 58.781 45.833 0.00 0.00 0.00 2.43
291 292 5.537188 GTCAGGATAAGAATGTGCTAGAGG 58.463 45.833 0.00 0.00 0.00 3.69
292 293 5.303078 GTCAGGATAAGAATGTGCTAGAGGA 59.697 44.000 0.00 0.00 0.00 3.71
293 294 5.538053 TCAGGATAAGAATGTGCTAGAGGAG 59.462 44.000 0.00 0.00 0.00 3.69
294 295 5.538053 CAGGATAAGAATGTGCTAGAGGAGA 59.462 44.000 0.00 0.00 0.00 3.71
295 296 5.538433 AGGATAAGAATGTGCTAGAGGAGAC 59.462 44.000 0.00 0.00 0.00 3.36
297 298 6.041523 GGATAAGAATGTGCTAGAGGAGACTT 59.958 42.308 0.00 0.00 44.43 3.01
298 299 4.734398 AGAATGTGCTAGAGGAGACTTG 57.266 45.455 0.00 0.00 44.43 3.16
299 300 3.450457 AGAATGTGCTAGAGGAGACTTGG 59.550 47.826 0.00 0.00 44.43 3.61
300 301 0.898320 TGTGCTAGAGGAGACTTGGC 59.102 55.000 0.00 0.00 44.43 4.52
301 302 0.898320 GTGCTAGAGGAGACTTGGCA 59.102 55.000 0.00 0.00 44.43 4.92
302 303 1.484240 GTGCTAGAGGAGACTTGGCAT 59.516 52.381 0.00 0.00 44.43 4.40
303 304 1.759445 TGCTAGAGGAGACTTGGCATC 59.241 52.381 0.00 0.00 44.43 3.91
304 305 1.069978 GCTAGAGGAGACTTGGCATCC 59.930 57.143 0.00 0.00 44.43 3.51
305 306 2.392662 CTAGAGGAGACTTGGCATCCA 58.607 52.381 7.55 0.00 44.43 3.41
306 307 0.908198 AGAGGAGACTTGGCATCCAC 59.092 55.000 7.55 1.29 44.43 4.02
307 308 0.908198 GAGGAGACTTGGCATCCACT 59.092 55.000 7.55 0.00 44.43 4.00
308 309 0.908198 AGGAGACTTGGCATCCACTC 59.092 55.000 7.55 5.53 37.44 3.51
309 310 0.107459 GGAGACTTGGCATCCACTCC 60.107 60.000 12.25 12.25 37.23 3.85
310 311 0.107459 GAGACTTGGCATCCACTCCC 60.107 60.000 0.00 0.00 30.78 4.30
311 312 0.842030 AGACTTGGCATCCACTCCCA 60.842 55.000 0.00 0.00 30.78 4.37
312 313 0.678048 GACTTGGCATCCACTCCCAC 60.678 60.000 0.00 0.00 30.78 4.61
313 314 1.746615 CTTGGCATCCACTCCCACG 60.747 63.158 0.00 0.00 30.78 4.94
314 315 2.469465 CTTGGCATCCACTCCCACGT 62.469 60.000 0.00 0.00 30.78 4.49
315 316 2.436646 GGCATCCACTCCCACGTG 60.437 66.667 9.08 9.08 34.71 4.49
316 317 2.662596 GCATCCACTCCCACGTGA 59.337 61.111 19.30 0.00 37.06 4.35
317 318 1.003839 GCATCCACTCCCACGTGAA 60.004 57.895 19.30 3.54 37.06 3.18
318 319 1.021390 GCATCCACTCCCACGTGAAG 61.021 60.000 19.30 16.16 37.06 3.02
319 320 1.021390 CATCCACTCCCACGTGAAGC 61.021 60.000 19.30 0.00 37.06 3.86
320 321 1.194781 ATCCACTCCCACGTGAAGCT 61.195 55.000 19.30 2.60 37.06 3.74
321 322 0.541063 TCCACTCCCACGTGAAGCTA 60.541 55.000 19.30 0.70 37.06 3.32
322 323 0.320374 CCACTCCCACGTGAAGCTAA 59.680 55.000 19.30 0.00 37.06 3.09
323 324 1.673033 CCACTCCCACGTGAAGCTAAG 60.673 57.143 19.30 7.14 37.06 2.18
324 325 0.608640 ACTCCCACGTGAAGCTAAGG 59.391 55.000 19.30 7.84 0.00 2.69
325 326 0.895530 CTCCCACGTGAAGCTAAGGA 59.104 55.000 19.30 12.08 0.00 3.36
326 327 0.895530 TCCCACGTGAAGCTAAGGAG 59.104 55.000 19.30 0.00 0.00 3.69
327 328 0.108138 CCCACGTGAAGCTAAGGAGG 60.108 60.000 19.30 0.92 0.00 4.30
328 329 0.895530 CCACGTGAAGCTAAGGAGGA 59.104 55.000 19.30 0.00 0.00 3.71
329 330 1.275291 CCACGTGAAGCTAAGGAGGAA 59.725 52.381 19.30 0.00 0.00 3.36
330 331 2.093447 CCACGTGAAGCTAAGGAGGAAT 60.093 50.000 19.30 0.00 0.00 3.01
331 332 3.132289 CCACGTGAAGCTAAGGAGGAATA 59.868 47.826 19.30 0.00 0.00 1.75
332 333 4.382685 CCACGTGAAGCTAAGGAGGAATAA 60.383 45.833 19.30 0.00 0.00 1.40
333 334 5.175859 CACGTGAAGCTAAGGAGGAATAAA 58.824 41.667 10.90 0.00 0.00 1.40
334 335 5.642063 CACGTGAAGCTAAGGAGGAATAAAA 59.358 40.000 10.90 0.00 0.00 1.52
335 336 6.148811 CACGTGAAGCTAAGGAGGAATAAAAA 59.851 38.462 10.90 0.00 0.00 1.94
353 354 2.185004 AAAGGGTCACGTGATGAAGG 57.815 50.000 23.12 0.00 39.72 3.46
354 355 1.348064 AAGGGTCACGTGATGAAGGA 58.652 50.000 23.12 0.00 39.72 3.36
355 356 1.573108 AGGGTCACGTGATGAAGGAT 58.427 50.000 23.12 1.12 39.72 3.24
356 357 1.482593 AGGGTCACGTGATGAAGGATC 59.517 52.381 23.12 5.73 39.72 3.36
357 358 1.473434 GGGTCACGTGATGAAGGATCC 60.473 57.143 23.12 14.84 39.72 3.36
358 359 1.207089 GGTCACGTGATGAAGGATCCA 59.793 52.381 23.12 0.00 39.72 3.41
359 360 2.354704 GGTCACGTGATGAAGGATCCAA 60.355 50.000 23.12 0.00 39.72 3.53
360 361 3.535561 GTCACGTGATGAAGGATCCAAT 58.464 45.455 23.12 4.28 39.72 3.16
361 362 3.557595 GTCACGTGATGAAGGATCCAATC 59.442 47.826 23.12 13.94 39.72 2.67
362 363 3.432186 TCACGTGATGAAGGATCCAATCC 60.432 47.826 15.76 7.33 40.29 3.01
363 364 5.904730 TCACGTGATGAAGGATCCAATCCA 61.905 45.833 15.76 6.20 41.59 3.41
364 365 7.648343 TCACGTGATGAAGGATCCAATCCAG 62.648 48.000 15.76 11.92 41.59 3.86
382 383 7.507733 AATCCAGATTGACAGATAGCAATTC 57.492 36.000 0.00 0.00 35.05 2.17
383 384 6.244552 TCCAGATTGACAGATAGCAATTCT 57.755 37.500 0.00 0.00 35.05 2.40
384 385 7.365497 TCCAGATTGACAGATAGCAATTCTA 57.635 36.000 0.00 0.00 35.05 2.10
385 386 7.795047 TCCAGATTGACAGATAGCAATTCTAA 58.205 34.615 0.00 0.00 35.05 2.10
386 387 8.435187 TCCAGATTGACAGATAGCAATTCTAAT 58.565 33.333 0.00 0.00 35.05 1.73
387 388 9.716531 CCAGATTGACAGATAGCAATTCTAATA 57.283 33.333 0.00 0.00 35.05 0.98
402 403 9.508567 GCAATTCTAATAGTCAAAAGATCAACC 57.491 33.333 0.00 0.00 0.00 3.77
406 407 8.792830 TCTAATAGTCAAAAGATCAACCAAGG 57.207 34.615 0.00 0.00 0.00 3.61
407 408 8.602424 TCTAATAGTCAAAAGATCAACCAAGGA 58.398 33.333 0.00 0.00 0.00 3.36
408 409 9.231297 CTAATAGTCAAAAGATCAACCAAGGAA 57.769 33.333 0.00 0.00 0.00 3.36
409 410 8.655935 AATAGTCAAAAGATCAACCAAGGAAT 57.344 30.769 0.00 0.00 0.00 3.01
410 411 6.581171 AGTCAAAAGATCAACCAAGGAATC 57.419 37.500 0.00 0.00 0.00 2.52
411 412 6.070656 AGTCAAAAGATCAACCAAGGAATCA 58.929 36.000 0.00 0.00 0.00 2.57
412 413 6.550854 AGTCAAAAGATCAACCAAGGAATCAA 59.449 34.615 0.00 0.00 0.00 2.57
413 414 7.069826 AGTCAAAAGATCAACCAAGGAATCAAA 59.930 33.333 0.00 0.00 0.00 2.69
414 415 7.169813 GTCAAAAGATCAACCAAGGAATCAAAC 59.830 37.037 0.00 0.00 0.00 2.93
415 416 5.376854 AAGATCAACCAAGGAATCAAACG 57.623 39.130 0.00 0.00 0.00 3.60
416 417 3.758554 AGATCAACCAAGGAATCAAACGG 59.241 43.478 0.00 0.00 0.00 4.44
417 418 1.611491 TCAACCAAGGAATCAAACGGC 59.389 47.619 0.00 0.00 0.00 5.68
418 419 0.966179 AACCAAGGAATCAAACGGCC 59.034 50.000 0.00 0.00 0.00 6.13
419 420 0.178975 ACCAAGGAATCAAACGGCCA 60.179 50.000 2.24 0.00 0.00 5.36
420 421 0.243636 CCAAGGAATCAAACGGCCAC 59.756 55.000 2.24 0.00 0.00 5.01
421 422 0.958091 CAAGGAATCAAACGGCCACA 59.042 50.000 2.24 0.00 0.00 4.17
422 423 0.958822 AAGGAATCAAACGGCCACAC 59.041 50.000 2.24 0.00 0.00 3.82
423 424 1.209127 GGAATCAAACGGCCACACG 59.791 57.895 2.24 0.00 40.31 4.49
424 425 1.209127 GAATCAAACGGCCACACGG 59.791 57.895 2.24 0.00 38.39 4.94
425 426 1.228003 AATCAAACGGCCACACGGA 60.228 52.632 2.24 0.00 38.39 4.69
426 427 0.608035 AATCAAACGGCCACACGGAT 60.608 50.000 2.24 0.00 38.39 4.18
427 428 1.305219 ATCAAACGGCCACACGGATG 61.305 55.000 2.24 0.00 38.39 3.51
428 429 3.361977 AAACGGCCACACGGATGC 61.362 61.111 2.24 0.00 38.39 3.91
432 433 3.443045 GGCCACACGGATGCCAAG 61.443 66.667 0.00 0.00 44.70 3.61
433 434 3.443045 GCCACACGGATGCCAAGG 61.443 66.667 0.00 0.00 0.00 3.61
434 435 2.034066 CCACACGGATGCCAAGGT 59.966 61.111 0.00 0.00 0.00 3.50
435 436 1.603455 CCACACGGATGCCAAGGTT 60.603 57.895 0.00 0.00 0.00 3.50
436 437 0.322098 CCACACGGATGCCAAGGTTA 60.322 55.000 0.00 0.00 0.00 2.85
437 438 1.529226 CACACGGATGCCAAGGTTAA 58.471 50.000 0.00 0.00 0.00 2.01
438 439 2.091541 CACACGGATGCCAAGGTTAAT 58.908 47.619 0.00 0.00 0.00 1.40
439 440 2.091541 ACACGGATGCCAAGGTTAATG 58.908 47.619 0.00 0.00 0.00 1.90
440 441 2.290641 ACACGGATGCCAAGGTTAATGA 60.291 45.455 0.00 0.00 0.00 2.57
441 442 2.951642 CACGGATGCCAAGGTTAATGAT 59.048 45.455 0.00 0.00 0.00 2.45
442 443 2.951642 ACGGATGCCAAGGTTAATGATG 59.048 45.455 0.00 0.00 0.00 3.07
443 444 3.213506 CGGATGCCAAGGTTAATGATGA 58.786 45.455 0.00 0.00 0.00 2.92
444 445 3.631686 CGGATGCCAAGGTTAATGATGAA 59.368 43.478 0.00 0.00 0.00 2.57
445 446 4.261322 CGGATGCCAAGGTTAATGATGAAG 60.261 45.833 0.00 0.00 0.00 3.02
446 447 4.646492 GGATGCCAAGGTTAATGATGAAGT 59.354 41.667 0.00 0.00 0.00 3.01
447 448 5.127682 GGATGCCAAGGTTAATGATGAAGTT 59.872 40.000 0.00 0.00 0.00 2.66
448 449 6.351286 GGATGCCAAGGTTAATGATGAAGTTT 60.351 38.462 0.00 0.00 0.00 2.66
449 450 6.418057 TGCCAAGGTTAATGATGAAGTTTT 57.582 33.333 0.00 0.00 0.00 2.43
450 451 6.825610 TGCCAAGGTTAATGATGAAGTTTTT 58.174 32.000 0.00 0.00 0.00 1.94
490 491 2.169832 TTTTCCTCTTCTCCACAGCG 57.830 50.000 0.00 0.00 0.00 5.18
491 492 1.338107 TTTCCTCTTCTCCACAGCGA 58.662 50.000 0.00 0.00 0.00 4.93
492 493 0.891373 TTCCTCTTCTCCACAGCGAG 59.109 55.000 0.00 0.00 0.00 5.03
493 494 1.153667 CCTCTTCTCCACAGCGAGC 60.154 63.158 0.00 0.00 0.00 5.03
494 495 1.153667 CTCTTCTCCACAGCGAGCC 60.154 63.158 0.00 0.00 0.00 4.70
495 496 1.881903 CTCTTCTCCACAGCGAGCCA 61.882 60.000 0.00 0.00 0.00 4.75
496 497 1.220206 CTTCTCCACAGCGAGCCAT 59.780 57.895 0.00 0.00 0.00 4.40
497 498 0.809241 CTTCTCCACAGCGAGCCATC 60.809 60.000 0.00 0.00 0.00 3.51
508 509 2.500165 AGCCATCGCTCTGAGCAG 59.500 61.111 27.46 19.65 43.95 4.24
509 510 3.270839 GCCATCGCTCTGAGCAGC 61.271 66.667 27.46 19.59 42.58 5.25
510 511 2.588314 CCATCGCTCTGAGCAGCC 60.588 66.667 27.46 0.30 42.58 4.85
511 512 2.186125 CATCGCTCTGAGCAGCCA 59.814 61.111 27.46 9.85 42.58 4.75
512 513 1.227586 CATCGCTCTGAGCAGCCAT 60.228 57.895 27.46 11.60 42.58 4.40
513 514 0.814410 CATCGCTCTGAGCAGCCATT 60.814 55.000 27.46 4.14 42.58 3.16
514 515 0.107312 ATCGCTCTGAGCAGCCATTT 60.107 50.000 27.46 2.81 42.58 2.32
515 516 0.321919 TCGCTCTGAGCAGCCATTTT 60.322 50.000 27.46 0.00 42.58 1.82
516 517 0.098376 CGCTCTGAGCAGCCATTTTC 59.902 55.000 27.46 0.00 42.58 2.29
517 518 1.171308 GCTCTGAGCAGCCATTTTCA 58.829 50.000 24.02 0.00 41.89 2.69
518 519 1.132643 GCTCTGAGCAGCCATTTTCAG 59.867 52.381 24.02 2.77 41.89 3.02
519 520 2.708051 CTCTGAGCAGCCATTTTCAGA 58.292 47.619 10.12 10.12 42.61 3.27
520 521 2.419324 CTCTGAGCAGCCATTTTCAGAC 59.581 50.000 7.11 0.00 40.65 3.51
521 522 1.471684 CTGAGCAGCCATTTTCAGACC 59.528 52.381 3.02 0.00 39.46 3.85
522 523 0.449388 GAGCAGCCATTTTCAGACCG 59.551 55.000 0.00 0.00 0.00 4.79
523 524 0.962356 AGCAGCCATTTTCAGACCGG 60.962 55.000 0.00 0.00 0.00 5.28
524 525 1.508088 CAGCCATTTTCAGACCGGC 59.492 57.895 0.00 0.00 43.31 6.13
525 526 1.678970 AGCCATTTTCAGACCGGCC 60.679 57.895 0.00 0.00 44.06 6.13
526 527 1.976474 GCCATTTTCAGACCGGCCA 60.976 57.895 0.00 0.00 36.73 5.36
527 528 1.937546 GCCATTTTCAGACCGGCCAG 61.938 60.000 0.00 0.00 36.73 4.85
529 530 1.678970 ATTTTCAGACCGGCCAGGC 60.679 57.895 1.26 1.26 46.52 4.85
530 531 3.860930 TTTTCAGACCGGCCAGGCC 62.861 63.158 22.33 22.33 46.52 5.19
539 540 2.045536 GGCCAGGCCTCAGTTGAG 60.046 66.667 24.99 2.09 46.69 3.02
540 541 2.749441 GCCAGGCCTCAGTTGAGC 60.749 66.667 0.00 0.00 40.75 4.26
541 542 2.045536 CCAGGCCTCAGTTGAGCC 60.046 66.667 0.00 8.61 40.75 4.70
542 543 2.435586 CAGGCCTCAGTTGAGCCG 60.436 66.667 0.00 3.08 40.69 5.52
543 544 4.400961 AGGCCTCAGTTGAGCCGC 62.401 66.667 0.00 3.16 40.69 6.53
546 547 4.379243 CCTCAGTTGAGCCGCCGT 62.379 66.667 3.58 0.00 40.75 5.68
547 548 3.114616 CTCAGTTGAGCCGCCGTG 61.115 66.667 0.00 0.00 35.13 4.94
548 549 4.680237 TCAGTTGAGCCGCCGTGG 62.680 66.667 0.00 0.00 42.50 4.94
559 560 4.101448 GCCGTGGCCAGTCTCCAT 62.101 66.667 5.11 0.00 35.81 3.41
560 561 2.671070 CCGTGGCCAGTCTCCATT 59.329 61.111 5.11 0.00 35.81 3.16
561 562 1.904771 CCGTGGCCAGTCTCCATTA 59.095 57.895 5.11 0.00 35.81 1.90
562 563 0.251916 CCGTGGCCAGTCTCCATTAA 59.748 55.000 5.11 0.00 35.81 1.40
563 564 1.656652 CGTGGCCAGTCTCCATTAAG 58.343 55.000 5.11 0.00 35.81 1.85
564 565 1.207089 CGTGGCCAGTCTCCATTAAGA 59.793 52.381 5.11 0.00 35.81 2.10
565 566 2.633488 GTGGCCAGTCTCCATTAAGAC 58.367 52.381 5.11 0.00 44.96 3.01
566 567 1.559682 TGGCCAGTCTCCATTAAGACC 59.440 52.381 0.00 0.00 45.61 3.85
567 568 1.134068 GGCCAGTCTCCATTAAGACCC 60.134 57.143 0.00 0.00 45.61 4.46
568 569 1.473434 GCCAGTCTCCATTAAGACCCG 60.473 57.143 0.61 0.00 45.61 5.28
569 570 1.473434 CCAGTCTCCATTAAGACCCGC 60.473 57.143 0.61 0.00 45.61 6.13
570 571 0.831307 AGTCTCCATTAAGACCCGCC 59.169 55.000 0.61 0.00 45.61 6.13
571 572 0.529992 GTCTCCATTAAGACCCGCCG 60.530 60.000 0.00 0.00 39.85 6.46
572 573 0.974010 TCTCCATTAAGACCCGCCGT 60.974 55.000 0.00 0.00 0.00 5.68
573 574 0.810031 CTCCATTAAGACCCGCCGTG 60.810 60.000 0.00 0.00 0.00 4.94
574 575 1.219664 CCATTAAGACCCGCCGTGA 59.780 57.895 0.00 0.00 0.00 4.35
575 576 0.810031 CCATTAAGACCCGCCGTGAG 60.810 60.000 0.00 0.00 0.00 3.51
576 577 1.153429 ATTAAGACCCGCCGTGAGC 60.153 57.895 0.00 0.00 38.52 4.26
577 578 2.588856 ATTAAGACCCGCCGTGAGCC 62.589 60.000 0.00 0.00 38.78 4.70
585 586 4.704833 GCCGTGAGCCTGCCTTCA 62.705 66.667 0.00 0.00 34.35 3.02
586 587 2.743928 CCGTGAGCCTGCCTTCAC 60.744 66.667 2.39 2.39 0.00 3.18
587 588 2.345244 CGTGAGCCTGCCTTCACT 59.655 61.111 9.08 0.00 0.00 3.41
588 589 2.031516 CGTGAGCCTGCCTTCACTG 61.032 63.158 9.08 1.54 0.00 3.66
589 590 2.033141 TGAGCCTGCCTTCACTGC 59.967 61.111 0.00 0.00 0.00 4.40
590 591 2.749441 GAGCCTGCCTTCACTGCC 60.749 66.667 0.00 0.00 0.00 4.85
591 592 3.557903 GAGCCTGCCTTCACTGCCA 62.558 63.158 0.00 0.00 0.00 4.92
592 593 2.362120 GCCTGCCTTCACTGCCAT 60.362 61.111 0.00 0.00 0.00 4.40
593 594 1.980772 GCCTGCCTTCACTGCCATT 60.981 57.895 0.00 0.00 0.00 3.16
594 595 1.538687 GCCTGCCTTCACTGCCATTT 61.539 55.000 0.00 0.00 0.00 2.32
595 596 0.971386 CCTGCCTTCACTGCCATTTT 59.029 50.000 0.00 0.00 0.00 1.82
596 597 1.337447 CCTGCCTTCACTGCCATTTTG 60.337 52.381 0.00 0.00 0.00 2.44
597 598 0.680618 TGCCTTCACTGCCATTTTGG 59.319 50.000 0.00 0.00 41.55 3.28
598 599 0.681175 GCCTTCACTGCCATTTTGGT 59.319 50.000 0.00 0.00 40.46 3.67
599 600 1.070601 GCCTTCACTGCCATTTTGGTT 59.929 47.619 0.00 0.00 40.46 3.67
600 601 2.867647 GCCTTCACTGCCATTTTGGTTC 60.868 50.000 0.00 0.00 40.46 3.62
601 602 2.364970 CCTTCACTGCCATTTTGGTTCA 59.635 45.455 0.00 0.00 40.46 3.18
602 603 3.181467 CCTTCACTGCCATTTTGGTTCAA 60.181 43.478 0.00 0.00 40.46 2.69
603 604 4.503643 CCTTCACTGCCATTTTGGTTCAAT 60.504 41.667 0.00 0.00 40.46 2.57
604 605 3.992643 TCACTGCCATTTTGGTTCAATG 58.007 40.909 0.00 0.00 40.46 2.82
605 606 2.481185 CACTGCCATTTTGGTTCAATGC 59.519 45.455 0.00 0.00 40.46 3.56
606 607 2.104451 ACTGCCATTTTGGTTCAATGCA 59.896 40.909 0.00 0.00 40.46 3.96
607 608 2.481185 CTGCCATTTTGGTTCAATGCAC 59.519 45.455 0.00 0.00 40.46 4.57
608 609 1.805943 GCCATTTTGGTTCAATGCACC 59.194 47.619 0.00 0.00 40.46 5.01
609 610 2.425539 CCATTTTGGTTCAATGCACCC 58.574 47.619 0.00 0.00 32.71 4.61
610 611 2.067766 CATTTTGGTTCAATGCACCCG 58.932 47.619 0.00 0.00 32.71 5.28
611 612 0.249657 TTTTGGTTCAATGCACCCGC 60.250 50.000 0.00 0.00 39.24 6.13
612 613 2.093537 TTTGGTTCAATGCACCCGCC 62.094 55.000 0.00 0.00 37.32 6.13
613 614 2.676471 GGTTCAATGCACCCGCCT 60.676 61.111 0.00 0.00 37.32 5.52
614 615 2.568090 GTTCAATGCACCCGCCTG 59.432 61.111 0.00 0.00 37.32 4.85
615 616 2.676121 TTCAATGCACCCGCCTGG 60.676 61.111 0.00 0.00 37.32 4.45
632 633 2.430367 GGTTGACCCGTCTGCCTT 59.570 61.111 0.00 0.00 0.00 4.35
633 634 1.671379 GGTTGACCCGTCTGCCTTC 60.671 63.158 0.00 0.00 0.00 3.46
634 635 2.027625 GTTGACCCGTCTGCCTTCG 61.028 63.158 0.00 0.00 0.00 3.79
635 636 2.504274 TTGACCCGTCTGCCTTCGT 61.504 57.895 0.00 0.00 0.00 3.85
636 637 2.126031 GACCCGTCTGCCTTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
637 638 2.915659 ACCCGTCTGCCTTCGTCA 60.916 61.111 0.00 0.00 0.00 4.35
638 639 2.432628 CCCGTCTGCCTTCGTCAC 60.433 66.667 0.00 0.00 0.00 3.67
639 640 2.432628 CCGTCTGCCTTCGTCACC 60.433 66.667 0.00 0.00 0.00 4.02
640 641 2.805353 CGTCTGCCTTCGTCACCG 60.805 66.667 0.00 0.00 0.00 4.94
641 642 3.112709 GTCTGCCTTCGTCACCGC 61.113 66.667 0.00 0.00 0.00 5.68
642 643 3.303135 TCTGCCTTCGTCACCGCT 61.303 61.111 0.00 0.00 0.00 5.52
643 644 3.114616 CTGCCTTCGTCACCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
646 647 3.114616 CCTTCGTCACCGCTGCAG 61.115 66.667 10.11 10.11 0.00 4.41
647 648 3.782244 CTTCGTCACCGCTGCAGC 61.782 66.667 29.12 29.12 37.78 5.25
856 859 5.333299 TGCTTGCGGTTAGAAATACTCTA 57.667 39.130 0.00 0.00 35.41 2.43
875 885 5.180680 ACTCTAACAAATTTGTAACCGCTCC 59.819 40.000 23.53 0.00 41.31 4.70
879 889 2.556622 CAAATTTGTAACCGCTCCCTGT 59.443 45.455 10.15 0.00 0.00 4.00
880 890 3.706600 AATTTGTAACCGCTCCCTGTA 57.293 42.857 0.00 0.00 0.00 2.74
962 973 4.186926 ACACGTTATCAGTACTCGCTCTA 58.813 43.478 0.00 0.00 0.00 2.43
965 976 3.558829 CGTTATCAGTACTCGCTCTACCA 59.441 47.826 0.00 0.00 0.00 3.25
1022 1034 2.531852 AGGGAGGGACCTGTCGTT 59.468 61.111 0.00 0.00 40.04 3.85
1124 1136 4.373116 TCGCCGTCAGGGACTTGC 62.373 66.667 0.00 0.00 34.60 4.01
1144 1156 3.710722 CAAGGAGTGGCCCTCGCT 61.711 66.667 13.19 9.56 41.46 4.93
1280 1313 1.533753 CCACCCCTGCAAACCATGT 60.534 57.895 0.00 0.00 0.00 3.21
1290 1323 1.047002 CAAACCATGTTGGGCCTTCA 58.953 50.000 4.53 4.21 43.37 3.02
1339 1372 1.822990 ACATCGTACCAATGACTCCGT 59.177 47.619 9.29 0.00 0.00 4.69
1353 1386 0.803768 CTCCGTCGCCATCTGTCTTG 60.804 60.000 0.00 0.00 0.00 3.02
1405 1438 2.203056 CATCGGCGCCATTCCTCA 60.203 61.111 28.98 0.08 0.00 3.86
1406 1439 1.819208 CATCGGCGCCATTCCTCAA 60.819 57.895 28.98 0.48 0.00 3.02
1408 1441 0.679640 ATCGGCGCCATTCCTCAAAA 60.680 50.000 28.98 0.00 0.00 2.44
1490 1535 1.079405 GGTTCGAATCGTGCCCAGA 60.079 57.895 0.00 0.00 0.00 3.86
1543 1588 0.388649 GACGCCATCAGACGAACTGT 60.389 55.000 12.23 1.08 45.86 3.55
1597 1642 4.008933 CGGATCTCCCATCCCCGC 62.009 72.222 0.00 0.00 34.76 6.13
1672 1717 6.425210 TCAAGATCAAGGTTGAAGAAGAGA 57.575 37.500 0.00 0.00 41.13 3.10
1717 1799 1.382522 GATGCCACCACGTTCATCAT 58.617 50.000 0.00 0.00 36.32 2.45
1796 1881 1.819632 GGATCCTGCGCCAATTCGT 60.820 57.895 4.18 0.00 0.00 3.85
1842 1927 2.741985 CTTCATGGCGCGTGGTCA 60.742 61.111 8.43 1.73 32.67 4.02
2000 2279 2.168496 CCAGGTACGAACAGAGAAGGA 58.832 52.381 0.00 0.00 0.00 3.36
2091 2373 2.935481 CCAGGCCAACTCTCCCCA 60.935 66.667 5.01 0.00 0.00 4.96
2162 2445 2.255316 GGTGTTGTGGTGTTTTCAACG 58.745 47.619 0.00 0.00 42.65 4.10
2204 2487 2.051334 TATTGCATAGCAGCCGGTTT 57.949 45.000 1.90 0.00 40.61 3.27
2653 2948 7.834681 ACTGTGAGGTCTACATCTAGTCATTTA 59.165 37.037 0.00 0.00 0.00 1.40
2769 3074 2.133553 CCATTGCTGCGAGATCTACAG 58.866 52.381 17.21 17.21 34.48 2.74
2930 3238 6.534475 AATTTATGCCTGATCACAACATGT 57.466 33.333 9.55 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.698855 TTGATGGCCTCTAGACTTGC 57.301 50.000 3.32 0.00 0.00 4.01
18 19 2.042464 AGCTTCGATTGATGGCCTCTA 58.958 47.619 3.32 0.00 0.00 2.43
52 53 2.092753 TGGCATGTCTTTGATCTCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
54 55 3.726557 TTGGCATGTCTTTGATCTCCT 57.273 42.857 0.00 0.00 0.00 3.69
55 56 4.996788 ATTTGGCATGTCTTTGATCTCC 57.003 40.909 0.00 0.00 0.00 3.71
96 97 9.563748 ACTTCCTGATGAATAGTAGTACTACTC 57.436 37.037 33.47 21.94 44.58 2.59
116 117 0.674895 GAACGCCAGCATCACTTCCT 60.675 55.000 0.00 0.00 0.00 3.36
122 123 1.521457 GATCCGAACGCCAGCATCA 60.521 57.895 0.00 0.00 0.00 3.07
123 124 2.247437 GGATCCGAACGCCAGCATC 61.247 63.158 0.00 0.00 0.00 3.91
125 126 4.812476 CGGATCCGAACGCCAGCA 62.812 66.667 30.62 0.00 42.83 4.41
149 150 0.309612 ACCTTTACGTTTTGGCTGCG 59.690 50.000 0.00 0.00 0.00 5.18
168 169 0.878523 CGAGCCGTGTTGAGGTTTGA 60.879 55.000 0.00 0.00 0.00 2.69
169 170 1.569493 CGAGCCGTGTTGAGGTTTG 59.431 57.895 0.00 0.00 0.00 2.93
173 174 2.432628 GTCCGAGCCGTGTTGAGG 60.433 66.667 0.00 0.00 0.00 3.86
183 184 0.658897 TTTGAACAAACCGTCCGAGC 59.341 50.000 0.00 0.00 0.00 5.03
192 193 3.042887 GTCGTGGCTGATTTGAACAAAC 58.957 45.455 2.03 0.00 32.51 2.93
215 216 0.684535 TGCAGAATTGTCCGAGTCCA 59.315 50.000 0.00 0.00 0.00 4.02
216 217 1.464997 GTTGCAGAATTGTCCGAGTCC 59.535 52.381 0.00 0.00 0.00 3.85
217 218 1.126846 CGTTGCAGAATTGTCCGAGTC 59.873 52.381 0.00 0.00 0.00 3.36
218 219 1.148310 CGTTGCAGAATTGTCCGAGT 58.852 50.000 0.00 0.00 0.00 4.18
219 220 0.179215 GCGTTGCAGAATTGTCCGAG 60.179 55.000 0.00 0.00 0.00 4.63
220 221 1.573829 GGCGTTGCAGAATTGTCCGA 61.574 55.000 0.00 0.00 0.00 4.55
221 222 1.154225 GGCGTTGCAGAATTGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
222 223 0.313672 TTGGCGTTGCAGAATTGTCC 59.686 50.000 0.00 0.00 0.00 4.02
223 224 1.408422 GTTGGCGTTGCAGAATTGTC 58.592 50.000 0.00 0.00 0.00 3.18
224 225 0.031994 GGTTGGCGTTGCAGAATTGT 59.968 50.000 0.00 0.00 0.00 2.71
225 226 0.314935 AGGTTGGCGTTGCAGAATTG 59.685 50.000 0.00 0.00 0.00 2.32
226 227 0.598065 GAGGTTGGCGTTGCAGAATT 59.402 50.000 0.00 0.00 0.00 2.17
227 228 1.577328 CGAGGTTGGCGTTGCAGAAT 61.577 55.000 0.00 0.00 0.00 2.40
228 229 2.250939 CGAGGTTGGCGTTGCAGAA 61.251 57.895 0.00 0.00 0.00 3.02
229 230 2.664851 CGAGGTTGGCGTTGCAGA 60.665 61.111 0.00 0.00 0.00 4.26
230 231 4.389576 GCGAGGTTGGCGTTGCAG 62.390 66.667 0.00 0.00 39.14 4.41
246 247 2.590007 CGTATGGCAGCTCAGGGC 60.590 66.667 0.00 0.00 42.19 5.19
247 248 2.590007 GCGTATGGCAGCTCAGGG 60.590 66.667 0.00 0.00 42.87 4.45
256 257 2.978452 ATCCTGACGCAGCGTATGGC 62.978 60.000 23.04 9.10 41.37 4.40
257 258 0.313987 TATCCTGACGCAGCGTATGG 59.686 55.000 23.04 24.16 41.37 2.74
258 259 2.054363 CTTATCCTGACGCAGCGTATG 58.946 52.381 23.04 16.10 41.37 2.39
259 260 1.954382 TCTTATCCTGACGCAGCGTAT 59.046 47.619 23.04 13.41 41.37 3.06
260 261 1.385528 TCTTATCCTGACGCAGCGTA 58.614 50.000 23.04 5.30 41.37 4.42
261 262 0.530744 TTCTTATCCTGACGCAGCGT 59.469 50.000 23.23 23.23 45.10 5.07
262 263 1.524355 CATTCTTATCCTGACGCAGCG 59.476 52.381 14.82 14.82 0.00 5.18
263 264 2.286294 CACATTCTTATCCTGACGCAGC 59.714 50.000 1.84 0.00 0.00 5.25
264 265 2.286294 GCACATTCTTATCCTGACGCAG 59.714 50.000 0.52 0.52 0.00 5.18
265 266 2.093500 AGCACATTCTTATCCTGACGCA 60.093 45.455 0.00 0.00 0.00 5.24
266 267 2.555199 AGCACATTCTTATCCTGACGC 58.445 47.619 0.00 0.00 0.00 5.19
267 268 5.188327 TCTAGCACATTCTTATCCTGACG 57.812 43.478 0.00 0.00 0.00 4.35
268 269 5.303078 TCCTCTAGCACATTCTTATCCTGAC 59.697 44.000 0.00 0.00 0.00 3.51
269 270 5.458595 TCCTCTAGCACATTCTTATCCTGA 58.541 41.667 0.00 0.00 0.00 3.86
270 271 5.538053 TCTCCTCTAGCACATTCTTATCCTG 59.462 44.000 0.00 0.00 0.00 3.86
271 272 5.538433 GTCTCCTCTAGCACATTCTTATCCT 59.462 44.000 0.00 0.00 0.00 3.24
272 273 5.538433 AGTCTCCTCTAGCACATTCTTATCC 59.462 44.000 0.00 0.00 0.00 2.59
273 274 6.648879 AGTCTCCTCTAGCACATTCTTATC 57.351 41.667 0.00 0.00 0.00 1.75
274 275 6.183360 CCAAGTCTCCTCTAGCACATTCTTAT 60.183 42.308 0.00 0.00 0.00 1.73
275 276 5.127845 CCAAGTCTCCTCTAGCACATTCTTA 59.872 44.000 0.00 0.00 0.00 2.10
276 277 4.081198 CCAAGTCTCCTCTAGCACATTCTT 60.081 45.833 0.00 0.00 0.00 2.52
277 278 3.450457 CCAAGTCTCCTCTAGCACATTCT 59.550 47.826 0.00 0.00 0.00 2.40
278 279 3.791245 CCAAGTCTCCTCTAGCACATTC 58.209 50.000 0.00 0.00 0.00 2.67
279 280 2.093235 GCCAAGTCTCCTCTAGCACATT 60.093 50.000 0.00 0.00 0.00 2.71
280 281 1.484240 GCCAAGTCTCCTCTAGCACAT 59.516 52.381 0.00 0.00 0.00 3.21
281 282 0.898320 GCCAAGTCTCCTCTAGCACA 59.102 55.000 0.00 0.00 0.00 4.57
282 283 0.898320 TGCCAAGTCTCCTCTAGCAC 59.102 55.000 0.00 0.00 0.00 4.40
283 284 1.759445 GATGCCAAGTCTCCTCTAGCA 59.241 52.381 0.00 0.00 33.55 3.49
284 285 1.069978 GGATGCCAAGTCTCCTCTAGC 59.930 57.143 0.00 0.00 0.00 3.42
285 286 2.102252 GTGGATGCCAAGTCTCCTCTAG 59.898 54.545 0.00 0.00 34.18 2.43
286 287 2.111384 GTGGATGCCAAGTCTCCTCTA 58.889 52.381 0.00 0.00 34.18 2.43
287 288 0.908198 GTGGATGCCAAGTCTCCTCT 59.092 55.000 0.00 0.00 34.18 3.69
288 289 0.908198 AGTGGATGCCAAGTCTCCTC 59.092 55.000 0.00 0.00 34.18 3.71
289 290 0.908198 GAGTGGATGCCAAGTCTCCT 59.092 55.000 0.00 0.00 34.18 3.69
290 291 0.107459 GGAGTGGATGCCAAGTCTCC 60.107 60.000 6.02 6.02 37.23 3.71
291 292 0.107459 GGGAGTGGATGCCAAGTCTC 60.107 60.000 0.00 0.00 39.77 3.36
292 293 1.994463 GGGAGTGGATGCCAAGTCT 59.006 57.895 0.00 0.00 39.77 3.24
293 294 4.645809 GGGAGTGGATGCCAAGTC 57.354 61.111 0.00 0.00 39.77 3.01
298 299 2.436646 CACGTGGGAGTGGATGCC 60.437 66.667 7.95 0.00 40.61 4.40
299 300 1.003839 TTCACGTGGGAGTGGATGC 60.004 57.895 17.00 0.00 42.10 3.91
300 301 1.021390 GCTTCACGTGGGAGTGGATG 61.021 60.000 17.00 0.00 42.10 3.51
301 302 1.194781 AGCTTCACGTGGGAGTGGAT 61.195 55.000 17.00 0.00 42.10 3.41
302 303 0.541063 TAGCTTCACGTGGGAGTGGA 60.541 55.000 17.00 1.79 42.10 4.02
303 304 0.320374 TTAGCTTCACGTGGGAGTGG 59.680 55.000 17.00 1.23 42.10 4.00
304 305 1.673033 CCTTAGCTTCACGTGGGAGTG 60.673 57.143 17.00 2.97 43.11 3.51
305 306 0.608640 CCTTAGCTTCACGTGGGAGT 59.391 55.000 17.00 7.68 0.00 3.85
306 307 0.895530 TCCTTAGCTTCACGTGGGAG 59.104 55.000 17.00 14.84 0.00 4.30
307 308 0.895530 CTCCTTAGCTTCACGTGGGA 59.104 55.000 17.00 11.28 0.00 4.37
308 309 0.108138 CCTCCTTAGCTTCACGTGGG 60.108 60.000 17.00 10.25 0.00 4.61
309 310 0.895530 TCCTCCTTAGCTTCACGTGG 59.104 55.000 17.00 0.92 0.00 4.94
310 311 2.743636 TTCCTCCTTAGCTTCACGTG 57.256 50.000 9.94 9.94 0.00 4.49
311 312 5.416271 TTTATTCCTCCTTAGCTTCACGT 57.584 39.130 0.00 0.00 0.00 4.49
312 313 6.737254 TTTTTATTCCTCCTTAGCTTCACG 57.263 37.500 0.00 0.00 0.00 4.35
332 333 2.884639 CCTTCATCACGTGACCCTTTTT 59.115 45.455 22.71 0.00 36.32 1.94
333 334 2.105821 TCCTTCATCACGTGACCCTTTT 59.894 45.455 22.71 0.00 36.32 2.27
334 335 1.697432 TCCTTCATCACGTGACCCTTT 59.303 47.619 22.71 0.56 36.32 3.11
335 336 1.348064 TCCTTCATCACGTGACCCTT 58.652 50.000 22.71 1.02 36.32 3.95
336 337 1.482593 GATCCTTCATCACGTGACCCT 59.517 52.381 22.71 1.47 36.32 4.34
337 338 1.473434 GGATCCTTCATCACGTGACCC 60.473 57.143 22.71 8.16 36.32 4.46
338 339 1.207089 TGGATCCTTCATCACGTGACC 59.793 52.381 22.71 15.15 36.32 4.02
339 340 2.672961 TGGATCCTTCATCACGTGAC 57.327 50.000 22.71 5.11 36.32 3.67
340 341 3.432186 GGATTGGATCCTTCATCACGTGA 60.432 47.826 22.48 22.48 46.19 4.35
341 342 2.874701 GGATTGGATCCTTCATCACGTG 59.125 50.000 14.23 9.94 46.19 4.49
342 343 3.199880 GGATTGGATCCTTCATCACGT 57.800 47.619 14.23 0.00 46.19 4.49
353 354 5.642919 GCTATCTGTCAATCTGGATTGGATC 59.357 44.000 19.21 12.32 46.08 3.36
354 355 5.072736 TGCTATCTGTCAATCTGGATTGGAT 59.927 40.000 19.21 16.09 46.08 3.41
355 356 4.409901 TGCTATCTGTCAATCTGGATTGGA 59.590 41.667 19.21 11.45 46.08 3.53
356 357 4.711399 TGCTATCTGTCAATCTGGATTGG 58.289 43.478 19.21 7.35 46.08 3.16
358 359 7.288560 AGAATTGCTATCTGTCAATCTGGATT 58.711 34.615 0.00 0.00 32.27 3.01
359 360 6.839454 AGAATTGCTATCTGTCAATCTGGAT 58.161 36.000 0.00 0.00 32.27 3.41
360 361 6.244552 AGAATTGCTATCTGTCAATCTGGA 57.755 37.500 0.00 0.00 32.27 3.86
361 362 8.618702 ATTAGAATTGCTATCTGTCAATCTGG 57.381 34.615 0.00 0.00 32.27 3.86
376 377 9.508567 GGTTGATCTTTTGACTATTAGAATTGC 57.491 33.333 0.00 0.00 0.00 3.56
380 381 9.231297 CCTTGGTTGATCTTTTGACTATTAGAA 57.769 33.333 0.00 0.00 0.00 2.10
381 382 8.602424 TCCTTGGTTGATCTTTTGACTATTAGA 58.398 33.333 0.00 0.00 0.00 2.10
382 383 8.792830 TCCTTGGTTGATCTTTTGACTATTAG 57.207 34.615 0.00 0.00 0.00 1.73
383 384 9.753674 ATTCCTTGGTTGATCTTTTGACTATTA 57.246 29.630 0.00 0.00 0.00 0.98
384 385 8.655935 ATTCCTTGGTTGATCTTTTGACTATT 57.344 30.769 0.00 0.00 0.00 1.73
385 386 7.890127 TGATTCCTTGGTTGATCTTTTGACTAT 59.110 33.333 0.00 0.00 0.00 2.12
386 387 7.230747 TGATTCCTTGGTTGATCTTTTGACTA 58.769 34.615 0.00 0.00 0.00 2.59
387 388 6.070656 TGATTCCTTGGTTGATCTTTTGACT 58.929 36.000 0.00 0.00 0.00 3.41
388 389 6.331369 TGATTCCTTGGTTGATCTTTTGAC 57.669 37.500 0.00 0.00 0.00 3.18
389 390 6.975196 TTGATTCCTTGGTTGATCTTTTGA 57.025 33.333 0.00 0.00 0.00 2.69
390 391 6.144402 CGTTTGATTCCTTGGTTGATCTTTTG 59.856 38.462 0.00 0.00 0.00 2.44
391 392 6.215845 CGTTTGATTCCTTGGTTGATCTTTT 58.784 36.000 0.00 0.00 0.00 2.27
392 393 5.278957 CCGTTTGATTCCTTGGTTGATCTTT 60.279 40.000 0.00 0.00 0.00 2.52
393 394 4.218417 CCGTTTGATTCCTTGGTTGATCTT 59.782 41.667 0.00 0.00 0.00 2.40
394 395 3.758554 CCGTTTGATTCCTTGGTTGATCT 59.241 43.478 0.00 0.00 0.00 2.75
395 396 3.673323 GCCGTTTGATTCCTTGGTTGATC 60.673 47.826 0.00 0.00 0.00 2.92
396 397 2.231235 GCCGTTTGATTCCTTGGTTGAT 59.769 45.455 0.00 0.00 0.00 2.57
397 398 1.611491 GCCGTTTGATTCCTTGGTTGA 59.389 47.619 0.00 0.00 0.00 3.18
398 399 1.336795 GGCCGTTTGATTCCTTGGTTG 60.337 52.381 0.00 0.00 0.00 3.77
399 400 0.966179 GGCCGTTTGATTCCTTGGTT 59.034 50.000 0.00 0.00 0.00 3.67
400 401 0.178975 TGGCCGTTTGATTCCTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
401 402 0.243636 GTGGCCGTTTGATTCCTTGG 59.756 55.000 0.00 0.00 0.00 3.61
402 403 0.958091 TGTGGCCGTTTGATTCCTTG 59.042 50.000 0.00 0.00 0.00 3.61
403 404 0.958822 GTGTGGCCGTTTGATTCCTT 59.041 50.000 0.00 0.00 0.00 3.36
404 405 1.234615 CGTGTGGCCGTTTGATTCCT 61.235 55.000 0.00 0.00 0.00 3.36
405 406 1.209127 CGTGTGGCCGTTTGATTCC 59.791 57.895 0.00 0.00 0.00 3.01
406 407 1.209127 CCGTGTGGCCGTTTGATTC 59.791 57.895 0.00 0.00 0.00 2.52
407 408 0.608035 ATCCGTGTGGCCGTTTGATT 60.608 50.000 0.00 0.00 34.14 2.57
408 409 1.002624 ATCCGTGTGGCCGTTTGAT 60.003 52.632 0.00 0.00 34.14 2.57
409 410 1.963855 CATCCGTGTGGCCGTTTGA 60.964 57.895 0.00 0.00 34.14 2.69
410 411 2.560861 CATCCGTGTGGCCGTTTG 59.439 61.111 0.00 0.00 34.14 2.93
411 412 3.361977 GCATCCGTGTGGCCGTTT 61.362 61.111 0.00 0.00 34.14 3.60
416 417 3.443045 CCTTGGCATCCGTGTGGC 61.443 66.667 4.21 4.21 44.24 5.01
417 418 0.322098 TAACCTTGGCATCCGTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
418 419 1.529226 TTAACCTTGGCATCCGTGTG 58.471 50.000 0.00 0.00 0.00 3.82
419 420 2.091541 CATTAACCTTGGCATCCGTGT 58.908 47.619 0.00 0.00 0.00 4.49
420 421 2.364632 TCATTAACCTTGGCATCCGTG 58.635 47.619 0.00 0.00 0.00 4.94
421 422 2.799126 TCATTAACCTTGGCATCCGT 57.201 45.000 0.00 0.00 0.00 4.69
422 423 3.213506 TCATCATTAACCTTGGCATCCG 58.786 45.455 0.00 0.00 0.00 4.18
423 424 4.646492 ACTTCATCATTAACCTTGGCATCC 59.354 41.667 0.00 0.00 0.00 3.51
424 425 5.841957 ACTTCATCATTAACCTTGGCATC 57.158 39.130 0.00 0.00 0.00 3.91
425 426 6.610075 AAACTTCATCATTAACCTTGGCAT 57.390 33.333 0.00 0.00 0.00 4.40
426 427 6.418057 AAAACTTCATCATTAACCTTGGCA 57.582 33.333 0.00 0.00 0.00 4.92
470 471 2.104111 TCGCTGTGGAGAAGAGGAAAAA 59.896 45.455 0.00 0.00 0.00 1.94
471 472 1.691976 TCGCTGTGGAGAAGAGGAAAA 59.308 47.619 0.00 0.00 0.00 2.29
472 473 1.273606 CTCGCTGTGGAGAAGAGGAAA 59.726 52.381 0.00 0.00 36.08 3.13
473 474 0.891373 CTCGCTGTGGAGAAGAGGAA 59.109 55.000 0.00 0.00 36.08 3.36
474 475 1.599606 GCTCGCTGTGGAGAAGAGGA 61.600 60.000 2.69 0.00 36.08 3.71
475 476 1.153667 GCTCGCTGTGGAGAAGAGG 60.154 63.158 2.69 0.00 36.08 3.69
476 477 1.153667 GGCTCGCTGTGGAGAAGAG 60.154 63.158 2.69 0.00 36.08 2.85
477 478 1.260538 ATGGCTCGCTGTGGAGAAGA 61.261 55.000 2.69 0.00 36.08 2.87
478 479 0.809241 GATGGCTCGCTGTGGAGAAG 60.809 60.000 2.69 0.00 36.08 2.85
479 480 1.219124 GATGGCTCGCTGTGGAGAA 59.781 57.895 2.69 0.00 36.08 2.87
480 481 2.895680 GATGGCTCGCTGTGGAGA 59.104 61.111 2.69 0.00 36.08 3.71
481 482 2.584418 CGATGGCTCGCTGTGGAG 60.584 66.667 0.00 0.00 38.20 3.86
492 493 3.270839 GCTGCTCAGAGCGATGGC 61.271 66.667 17.81 14.28 46.26 4.40
493 494 2.588314 GGCTGCTCAGAGCGATGG 60.588 66.667 17.81 8.71 46.26 3.51
494 495 0.814410 AATGGCTGCTCAGAGCGATG 60.814 55.000 17.81 11.10 46.26 3.84
495 496 0.107312 AAATGGCTGCTCAGAGCGAT 60.107 50.000 17.81 4.28 46.26 4.58
496 497 0.321919 AAAATGGCTGCTCAGAGCGA 60.322 50.000 17.81 6.19 46.26 4.93
497 498 0.098376 GAAAATGGCTGCTCAGAGCG 59.902 55.000 17.81 13.01 46.26 5.03
498 499 1.132643 CTGAAAATGGCTGCTCAGAGC 59.867 52.381 16.21 16.21 42.82 4.09
499 500 2.419324 GTCTGAAAATGGCTGCTCAGAG 59.581 50.000 16.03 0.00 43.67 3.35
500 501 2.430465 GTCTGAAAATGGCTGCTCAGA 58.570 47.619 12.76 12.76 41.47 3.27
501 502 1.471684 GGTCTGAAAATGGCTGCTCAG 59.528 52.381 8.96 8.96 37.28 3.35
502 503 1.538047 GGTCTGAAAATGGCTGCTCA 58.462 50.000 0.00 0.00 0.00 4.26
503 504 0.449388 CGGTCTGAAAATGGCTGCTC 59.551 55.000 0.00 0.00 0.00 4.26
504 505 0.962356 CCGGTCTGAAAATGGCTGCT 60.962 55.000 0.00 0.00 0.00 4.24
505 506 1.508088 CCGGTCTGAAAATGGCTGC 59.492 57.895 0.00 0.00 0.00 5.25
506 507 1.508088 GCCGGTCTGAAAATGGCTG 59.492 57.895 1.90 0.00 42.44 4.85
507 508 1.678970 GGCCGGTCTGAAAATGGCT 60.679 57.895 1.90 0.00 45.06 4.75
508 509 1.937546 CTGGCCGGTCTGAAAATGGC 61.938 60.000 7.97 0.00 44.98 4.40
509 510 1.315257 CCTGGCCGGTCTGAAAATGG 61.315 60.000 15.35 0.00 0.00 3.16
510 511 1.937546 GCCTGGCCGGTCTGAAAATG 61.938 60.000 15.35 0.00 34.25 2.32
511 512 1.678970 GCCTGGCCGGTCTGAAAAT 60.679 57.895 15.35 0.00 34.25 1.82
512 513 2.282180 GCCTGGCCGGTCTGAAAA 60.282 61.111 15.35 0.00 34.25 2.29
513 514 4.344865 GGCCTGGCCGGTCTGAAA 62.345 66.667 24.16 0.00 39.62 2.69
523 524 2.749441 GCTCAACTGAGGCCTGGC 60.749 66.667 12.00 11.05 42.29 4.85
529 530 4.379243 ACGGCGGCTCAACTGAGG 62.379 66.667 13.24 0.00 42.29 3.86
530 531 3.114616 CACGGCGGCTCAACTGAG 61.115 66.667 13.24 2.17 44.75 3.35
531 532 4.680237 CCACGGCGGCTCAACTGA 62.680 66.667 13.24 0.00 0.00 3.41
542 543 2.252072 TAATGGAGACTGGCCACGGC 62.252 60.000 0.00 0.00 38.44 5.68
543 544 0.251916 TTAATGGAGACTGGCCACGG 59.748 55.000 0.00 0.00 38.44 4.94
544 545 1.207089 TCTTAATGGAGACTGGCCACG 59.793 52.381 0.00 0.00 38.44 4.94
545 546 2.633488 GTCTTAATGGAGACTGGCCAC 58.367 52.381 0.00 0.00 42.18 5.01
546 547 1.559682 GGTCTTAATGGAGACTGGCCA 59.440 52.381 4.71 4.71 44.32 5.36
547 548 1.134068 GGGTCTTAATGGAGACTGGCC 60.134 57.143 0.00 0.00 44.32 5.36
548 549 1.473434 CGGGTCTTAATGGAGACTGGC 60.473 57.143 8.21 0.00 44.32 4.85
549 550 1.473434 GCGGGTCTTAATGGAGACTGG 60.473 57.143 8.21 3.32 44.32 4.00
550 551 1.473434 GGCGGGTCTTAATGGAGACTG 60.473 57.143 8.21 4.00 44.32 3.51
551 552 0.831307 GGCGGGTCTTAATGGAGACT 59.169 55.000 8.21 0.00 44.32 3.24
552 553 0.529992 CGGCGGGTCTTAATGGAGAC 60.530 60.000 0.00 1.11 44.20 3.36
553 554 0.974010 ACGGCGGGTCTTAATGGAGA 60.974 55.000 13.24 0.00 0.00 3.71
554 555 0.810031 CACGGCGGGTCTTAATGGAG 60.810 60.000 13.24 0.00 0.00 3.86
555 556 1.219664 CACGGCGGGTCTTAATGGA 59.780 57.895 13.24 0.00 0.00 3.41
556 557 0.810031 CTCACGGCGGGTCTTAATGG 60.810 60.000 9.84 0.00 0.00 3.16
557 558 1.429148 GCTCACGGCGGGTCTTAATG 61.429 60.000 9.84 0.00 0.00 1.90
558 559 1.153429 GCTCACGGCGGGTCTTAAT 60.153 57.895 9.84 0.00 0.00 1.40
559 560 2.263540 GCTCACGGCGGGTCTTAA 59.736 61.111 9.84 0.00 0.00 1.85
560 561 3.766691 GGCTCACGGCGGGTCTTA 61.767 66.667 9.84 0.00 42.94 2.10
568 569 4.704833 TGAAGGCAGGCTCACGGC 62.705 66.667 0.00 0.00 39.75 5.68
569 570 2.743928 GTGAAGGCAGGCTCACGG 60.744 66.667 0.00 0.00 33.19 4.94
570 571 2.031516 CAGTGAAGGCAGGCTCACG 61.032 63.158 15.89 10.21 45.39 4.35
571 572 2.331132 GCAGTGAAGGCAGGCTCAC 61.331 63.158 14.76 14.76 41.90 3.51
572 573 2.033141 GCAGTGAAGGCAGGCTCA 59.967 61.111 0.00 0.00 0.00 4.26
573 574 2.749441 GGCAGTGAAGGCAGGCTC 60.749 66.667 0.00 0.00 0.00 4.70
574 575 3.573229 TGGCAGTGAAGGCAGGCT 61.573 61.111 0.00 0.00 39.34 4.58
579 580 0.681175 ACCAAAATGGCAGTGAAGGC 59.319 50.000 0.00 0.00 42.67 4.35
580 581 2.364970 TGAACCAAAATGGCAGTGAAGG 59.635 45.455 0.00 0.00 42.67 3.46
581 582 3.731652 TGAACCAAAATGGCAGTGAAG 57.268 42.857 0.00 0.00 42.67 3.02
582 583 4.378774 CATTGAACCAAAATGGCAGTGAA 58.621 39.130 0.00 0.00 42.67 3.18
583 584 3.803021 GCATTGAACCAAAATGGCAGTGA 60.803 43.478 0.00 0.00 42.67 3.41
584 585 2.481185 GCATTGAACCAAAATGGCAGTG 59.519 45.455 0.00 0.00 42.67 3.66
585 586 2.104451 TGCATTGAACCAAAATGGCAGT 59.896 40.909 0.00 0.00 42.67 4.40
586 587 2.481185 GTGCATTGAACCAAAATGGCAG 59.519 45.455 0.00 0.00 42.67 4.85
587 588 2.492012 GTGCATTGAACCAAAATGGCA 58.508 42.857 0.00 0.00 42.67 4.92
588 589 1.805943 GGTGCATTGAACCAAAATGGC 59.194 47.619 9.11 0.00 42.67 4.40
589 590 2.425539 GGGTGCATTGAACCAAAATGG 58.574 47.619 15.93 0.00 45.02 3.16
590 591 2.067766 CGGGTGCATTGAACCAAAATG 58.932 47.619 15.93 0.00 39.65 2.32
591 592 1.607767 GCGGGTGCATTGAACCAAAAT 60.608 47.619 15.93 0.00 42.15 1.82
592 593 0.249657 GCGGGTGCATTGAACCAAAA 60.250 50.000 15.93 0.00 42.15 2.44
593 594 1.365633 GCGGGTGCATTGAACCAAA 59.634 52.632 15.93 0.00 42.15 3.28
594 595 2.569354 GGCGGGTGCATTGAACCAA 61.569 57.895 15.93 0.00 45.35 3.67
595 596 2.988684 GGCGGGTGCATTGAACCA 60.989 61.111 15.93 0.00 45.35 3.67
596 597 2.676471 AGGCGGGTGCATTGAACC 60.676 61.111 5.09 5.09 45.35 3.62
597 598 2.568090 CAGGCGGGTGCATTGAAC 59.432 61.111 0.00 0.00 45.35 3.18
598 599 2.676121 CCAGGCGGGTGCATTGAA 60.676 61.111 0.00 0.00 45.35 2.69
615 616 1.671379 GAAGGCAGACGGGTCAACC 60.671 63.158 1.17 2.11 0.00 3.77
616 617 2.027625 CGAAGGCAGACGGGTCAAC 61.028 63.158 1.17 0.00 0.00 3.18
617 618 2.342279 CGAAGGCAGACGGGTCAA 59.658 61.111 1.17 0.00 0.00 3.18
618 619 2.915659 ACGAAGGCAGACGGGTCA 60.916 61.111 1.17 0.00 0.00 4.02
619 620 2.126031 GACGAAGGCAGACGGGTC 60.126 66.667 0.00 0.00 0.00 4.46
620 621 2.915659 TGACGAAGGCAGACGGGT 60.916 61.111 0.00 0.00 0.00 5.28
621 622 2.432628 GTGACGAAGGCAGACGGG 60.433 66.667 0.00 0.00 0.00 5.28
622 623 2.432628 GGTGACGAAGGCAGACGG 60.433 66.667 0.00 0.00 0.00 4.79
640 641 0.805711 AAAACAAACCACGCTGCAGC 60.806 50.000 29.12 29.12 37.78 5.25
641 642 1.324134 CAAAAACAAACCACGCTGCAG 59.676 47.619 10.11 10.11 0.00 4.41
642 643 1.337260 ACAAAAACAAACCACGCTGCA 60.337 42.857 0.00 0.00 0.00 4.41
643 644 1.355005 ACAAAAACAAACCACGCTGC 58.645 45.000 0.00 0.00 0.00 5.25
644 645 3.549873 CCTAACAAAAACAAACCACGCTG 59.450 43.478 0.00 0.00 0.00 5.18
645 646 3.444388 TCCTAACAAAAACAAACCACGCT 59.556 39.130 0.00 0.00 0.00 5.07
646 647 3.771798 TCCTAACAAAAACAAACCACGC 58.228 40.909 0.00 0.00 0.00 5.34
647 648 7.419204 TCTATTCCTAACAAAAACAAACCACG 58.581 34.615 0.00 0.00 0.00 4.94
648 649 9.758651 ATTCTATTCCTAACAAAAACAAACCAC 57.241 29.630 0.00 0.00 0.00 4.16
814 817 1.635663 GCGGTTGCTAATGCGTGAGT 61.636 55.000 0.00 0.00 43.34 3.41
856 859 3.005367 CAGGGAGCGGTTACAAATTTGTT 59.995 43.478 27.66 9.80 42.35 2.83
870 880 5.047943 GGGCACTATATATATACAGGGAGCG 60.048 48.000 4.39 0.00 0.00 5.03
962 973 0.603975 GGCTCTTTGTCGCTCTTGGT 60.604 55.000 0.00 0.00 0.00 3.67
965 976 1.002430 TGATGGCTCTTTGTCGCTCTT 59.998 47.619 0.00 0.00 0.00 2.85
1124 1136 4.785453 GAGGGCCACTCCTTGCGG 62.785 72.222 6.18 0.00 40.49 5.69
1267 1279 1.004679 GCCCAACATGGTTTGCAGG 60.005 57.895 0.00 0.00 35.17 4.85
1280 1313 4.033776 CCGGAGCTGAAGGCCCAA 62.034 66.667 0.00 0.00 43.05 4.12
1339 1372 0.904649 ATGGTCAAGACAGATGGCGA 59.095 50.000 2.29 0.00 0.00 5.54
1406 1439 4.022849 CGCAAGGGAACATCTCTTCTTTTT 60.023 41.667 0.00 0.00 34.32 1.94
1408 1441 3.077359 CGCAAGGGAACATCTCTTCTTT 58.923 45.455 0.00 0.00 34.32 2.52
1543 1588 1.330655 GGAGGGATGAAGTGCTCCGA 61.331 60.000 0.00 0.00 31.95 4.55
1672 1717 1.755977 CGAGCCCTGGTCCTCTATCTT 60.756 57.143 9.15 0.00 0.00 2.40
1939 2061 3.965026 CTCTCCCTGCCCCGTCTCA 62.965 68.421 0.00 0.00 0.00 3.27
2000 2279 0.984230 TCTCCGCCACTTCCAATTCT 59.016 50.000 0.00 0.00 0.00 2.40
2091 2373 1.008938 AGGCCTGATTAGGTGAGGAGT 59.991 52.381 3.11 0.00 46.41 3.85
2137 2420 1.261480 AAACACCACAACACCAGCAA 58.739 45.000 0.00 0.00 0.00 3.91
2576 2871 5.864474 CAGTAGATCACACAGTTACCTTGTC 59.136 44.000 0.00 0.00 0.00 3.18
2653 2948 5.930135 ACACTTTGAAGGTAGTCATCTGTT 58.070 37.500 0.00 0.00 0.00 3.16
2695 3000 7.517320 TGTTCATATATCCATTACCTTGTGCT 58.483 34.615 0.00 0.00 0.00 4.40
2769 3074 2.683968 TGAAGATAGTCACCGTTGTGC 58.316 47.619 0.00 0.00 42.46 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.