Multiple sequence alignment - TraesCS1A01G181600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G181600 chr1A 100.000 5608 0 0 2239 7846 327532959 327538566 0.000000e+00 10357.0
1 TraesCS1A01G181600 chr1A 100.000 1987 0 0 1 1987 327530721 327532707 0.000000e+00 3670.0
2 TraesCS1A01G181600 chr1A 85.833 120 17 0 7117 7236 547071815 547071934 2.300000e-25 128.0
3 TraesCS1A01G181600 chr1A 100.000 28 0 0 835 862 95860786 95860759 1.400000e-02 52.8
4 TraesCS1A01G181600 chr1D 92.896 2562 114 27 3088 5626 255497587 255500103 0.000000e+00 3661.0
5 TraesCS1A01G181600 chr1D 95.067 1500 54 11 5955 7451 255500506 255501988 0.000000e+00 2342.0
6 TraesCS1A01G181600 chr1D 87.611 1574 61 47 1 1497 255493259 255494775 0.000000e+00 1703.0
7 TraesCS1A01G181600 chr1D 95.532 649 28 1 2449 3096 255496440 255497088 0.000000e+00 1037.0
8 TraesCS1A01G181600 chr1D 92.570 498 18 5 1497 1987 255495676 255496161 0.000000e+00 697.0
9 TraesCS1A01G181600 chr1D 91.395 337 22 4 5619 5954 255500132 255500462 9.280000e-124 455.0
10 TraesCS1A01G181600 chr1D 94.907 216 10 1 2248 2463 255496186 255496400 3.510000e-88 337.0
11 TraesCS1A01G181600 chr1D 82.625 259 31 10 7600 7846 481643514 481643258 4.770000e-52 217.0
12 TraesCS1A01G181600 chr1D 82.558 258 32 10 7600 7846 481635213 481634958 1.710000e-51 215.0
13 TraesCS1A01G181600 chr1B 95.256 1834 71 6 5619 7451 357420392 357418574 0.000000e+00 2891.0
14 TraesCS1A01G181600 chr1B 95.430 1466 35 11 4167 5626 357421860 357420421 0.000000e+00 2307.0
15 TraesCS1A01G181600 chr1B 94.422 1004 49 4 2239 3241 357423990 357422993 0.000000e+00 1537.0
16 TraesCS1A01G181600 chr1B 96.039 934 27 5 1045 1972 357425232 357424303 0.000000e+00 1511.0
17 TraesCS1A01G181600 chr1B 93.033 933 52 9 3240 4169 357422879 357421957 0.000000e+00 1351.0
18 TraesCS1A01G181600 chr1B 85.065 1078 63 41 1 1040 357426293 357425276 0.000000e+00 1009.0
19 TraesCS1A01G181600 chr5D 82.510 263 31 11 7594 7846 129393815 129393558 4.770000e-52 217.0
20 TraesCS1A01G181600 chr4A 81.467 259 26 14 7600 7846 123256978 123256730 8.030000e-45 193.0
21 TraesCS1A01G181600 chr5A 81.273 267 22 19 7595 7845 293436725 293436471 2.890000e-44 191.0
22 TraesCS1A01G181600 chr7A 80.077 261 35 14 7601 7846 97601690 97601948 2.250000e-40 178.0
23 TraesCS1A01G181600 chr7A 88.889 117 13 0 7120 7236 214437544 214437428 2.280000e-30 145.0
24 TraesCS1A01G181600 chr7A 100.000 33 0 0 5208 5240 695373170 695373202 2.360000e-05 62.1
25 TraesCS1A01G181600 chr3D 80.488 246 31 14 7609 7844 45075480 45075718 1.050000e-38 172.0
26 TraesCS1A01G181600 chr6A 81.223 229 28 11 7598 7817 135738070 135737848 3.760000e-38 171.0
27 TraesCS1A01G181600 chr5B 79.775 267 29 17 7596 7846 390713488 390713231 3.760000e-38 171.0
28 TraesCS1A01G181600 chr2B 87.395 119 14 1 7118 7236 84807672 84807789 1.370000e-27 135.0
29 TraesCS1A01G181600 chr2A 86.179 123 17 0 7114 7236 151925212 151925090 4.940000e-27 134.0
30 TraesCS1A01G181600 chr2A 86.207 116 16 0 7118 7233 151874224 151874339 8.270000e-25 126.0
31 TraesCS1A01G181600 chr6B 85.833 120 17 0 7117 7236 240407421 240407540 2.300000e-25 128.0
32 TraesCS1A01G181600 chr6B 94.737 38 2 0 5199 5236 125345285 125345322 8.500000e-05 60.2
33 TraesCS1A01G181600 chr3B 85.124 121 18 0 7117 7237 499752446 499752566 2.970000e-24 124.0
34 TraesCS1A01G181600 chr3B 97.436 39 0 1 5208 5246 765726779 765726742 1.830000e-06 65.8
35 TraesCS1A01G181600 chr3B 100.000 32 0 0 5210 5241 737350050 737350081 8.500000e-05 60.2
36 TraesCS1A01G181600 chrUn 97.436 39 0 1 5208 5246 277594244 277594207 1.830000e-06 65.8
37 TraesCS1A01G181600 chr7D 100.000 31 0 0 5210 5240 386644578 386644608 3.060000e-04 58.4
38 TraesCS1A01G181600 chr3A 100.000 31 0 0 5210 5240 92537089 92537119 3.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G181600 chr1A 327530721 327538566 7845 False 7013.500000 10357 100.0000 1 7846 2 chr1A.!!$F2 7845
1 TraesCS1A01G181600 chr1D 255493259 255501988 8729 False 1461.714286 3661 92.8540 1 7451 7 chr1D.!!$F1 7450
2 TraesCS1A01G181600 chr1B 357418574 357426293 7719 True 1767.666667 2891 93.2075 1 7451 6 chr1B.!!$R1 7450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 471 0.601841 GTCGGGAGAAAAGCGGTTGA 60.602 55.000 0.00 0.00 42.89 3.18 F
1467 1564 0.093705 GTGCATTCGAGTCGTTGCTC 59.906 55.000 29.32 24.96 37.70 4.26 F
2450 3501 0.321564 TGACCACTGCGGAATTGGAG 60.322 55.000 10.80 0.00 38.63 3.86 F
3265 4994 0.816825 CAGCATGGAACCTCATCCCG 60.817 60.000 0.00 0.00 38.82 5.14 F
3570 5299 0.846693 ACCAGGCTATTGGGTGGATC 59.153 55.000 7.24 0.00 42.76 3.36 F
4559 6398 0.179018 ACTTTGTCAGGTGCTGGTCC 60.179 55.000 0.00 0.00 31.51 4.46 F
4573 6412 0.920763 TGGTCCATGGGATTCTGGCT 60.921 55.000 13.02 0.00 32.73 4.75 F
4581 6420 1.144936 GGATTCTGGCTGAGGTCGG 59.855 63.158 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2846 0.253044 TCTCGGCTGGAAAGGATTGG 59.747 55.000 0.00 0.0 0.00 3.16 R
2587 3692 0.608640 CAGGCCTCCTCAAGTAACGT 59.391 55.000 0.00 0.0 0.00 3.99 R
4389 6228 2.198827 AGGATGCCAATTGAACGACA 57.801 45.000 7.12 0.0 0.00 4.35 R
4541 6380 0.179020 TGGACCAGCACCTGACAAAG 60.179 55.000 0.00 0.0 32.44 2.77 R
4666 6505 0.391597 AAAAAGAGAGACGGGCGTCA 59.608 50.000 0.00 0.0 46.76 4.35 R
6513 8453 0.035458 AGGCTTTCTTCCACTGTCCG 59.965 55.000 0.00 0.0 0.00 4.79 R
6520 8460 1.354101 TTCGGGTAGGCTTTCTTCCA 58.646 50.000 0.00 0.0 34.93 3.53 R
7062 9002 9.017509 TGTAGACTTTACTTTATCTTTCCTCGA 57.982 33.333 0.00 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.645535 AGCAAGCTCAACAAGAATACTCA 58.354 39.130 0.00 0.00 0.00 3.41
62 63 2.040544 AAATTCCACGAGCCCAGCG 61.041 57.895 0.00 0.00 0.00 5.18
80 81 1.073897 GCCCCAGCAGACTCAGTTT 59.926 57.895 0.00 0.00 39.53 2.66
88 89 2.365617 AGCAGACTCAGTTTTTCCTCGA 59.634 45.455 0.00 0.00 0.00 4.04
112 113 4.935352 AGAAGCCTAGCATCTAGAAGTG 57.065 45.455 0.00 0.00 34.77 3.16
122 123 6.007936 AGCATCTAGAAGTGTTATCTAGCG 57.992 41.667 0.00 2.03 43.92 4.26
125 126 5.830000 TCTAGAAGTGTTATCTAGCGCAA 57.170 39.130 11.47 0.00 43.92 4.85
161 162 3.121030 CCTGCGCCGGAACAAGAG 61.121 66.667 13.28 0.00 0.00 2.85
185 186 1.078848 GCCACAGAACTCGCAGGAT 60.079 57.895 0.00 0.00 0.00 3.24
186 187 0.674895 GCCACAGAACTCGCAGGATT 60.675 55.000 0.00 0.00 0.00 3.01
372 373 2.063378 CCTGAGGAGGAGAGGCCAC 61.063 68.421 5.01 0.00 42.93 5.01
382 383 1.079127 AGAGGCCACGAATTCCACG 60.079 57.895 5.01 0.00 0.00 4.94
400 401 4.061596 CCACGCCACCAAATAAAAACAAT 58.938 39.130 0.00 0.00 0.00 2.71
401 402 4.151512 CCACGCCACCAAATAAAAACAATC 59.848 41.667 0.00 0.00 0.00 2.67
402 403 4.151512 CACGCCACCAAATAAAAACAATCC 59.848 41.667 0.00 0.00 0.00 3.01
403 404 3.682377 CGCCACCAAATAAAAACAATCCC 59.318 43.478 0.00 0.00 0.00 3.85
404 405 4.646572 GCCACCAAATAAAAACAATCCCA 58.353 39.130 0.00 0.00 0.00 4.37
405 406 5.066593 GCCACCAAATAAAAACAATCCCAA 58.933 37.500 0.00 0.00 0.00 4.12
406 407 5.532779 GCCACCAAATAAAAACAATCCCAAA 59.467 36.000 0.00 0.00 0.00 3.28
407 408 6.039829 GCCACCAAATAAAAACAATCCCAAAA 59.960 34.615 0.00 0.00 0.00 2.44
428 429 3.771577 AAAATCAGTCCTCTTCGGTGT 57.228 42.857 0.00 0.00 0.00 4.16
429 430 4.884668 AAAATCAGTCCTCTTCGGTGTA 57.115 40.909 0.00 0.00 0.00 2.90
430 431 3.870633 AATCAGTCCTCTTCGGTGTAC 57.129 47.619 0.00 0.00 0.00 2.90
431 432 1.162698 TCAGTCCTCTTCGGTGTACG 58.837 55.000 0.00 0.00 46.11 3.67
470 471 0.601841 GTCGGGAGAAAAGCGGTTGA 60.602 55.000 0.00 0.00 42.89 3.18
617 638 2.568935 GATCACGCGCTTTGGACAGC 62.569 60.000 5.73 0.00 36.33 4.40
726 748 1.801309 CGCGGCCTTCTTTCCCAAAA 61.801 55.000 0.00 0.00 0.00 2.44
768 805 2.361230 CCGTTTCCTCCCTTGGGC 60.361 66.667 0.00 0.00 0.00 5.36
769 806 2.361230 CGTTTCCTCCCTTGGGCC 60.361 66.667 0.00 0.00 0.00 5.80
785 827 4.452733 CCTCAACCCTCGGCCGTC 62.453 72.222 27.15 0.00 0.00 4.79
786 828 4.796231 CTCAACCCTCGGCCGTCG 62.796 72.222 27.15 17.27 40.90 5.12
803 845 3.064324 GGCCCGTCAGCAGCATTT 61.064 61.111 0.00 0.00 0.00 2.32
804 846 2.486966 GCCCGTCAGCAGCATTTC 59.513 61.111 0.00 0.00 0.00 2.17
880 923 1.302671 TACCCTTTCCGTTTGCCCG 60.303 57.895 0.00 0.00 0.00 6.13
923 966 1.745864 GGCGAGACACGAGAGGAGA 60.746 63.158 0.00 0.00 45.77 3.71
925 968 1.022451 GCGAGACACGAGAGGAGAGT 61.022 60.000 0.00 0.00 45.77 3.24
926 969 0.724549 CGAGACACGAGAGGAGAGTG 59.275 60.000 0.00 0.00 45.77 3.51
928 971 1.135731 GACACGAGAGGAGAGTGCG 59.864 63.158 0.00 0.00 39.31 5.34
929 972 2.202544 CACGAGAGGAGAGTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
930 973 2.673341 ACGAGAGGAGAGTGCGCA 60.673 61.111 5.66 5.66 0.00 6.09
931 974 2.101965 CGAGAGGAGAGTGCGCAG 59.898 66.667 12.22 0.00 0.00 5.18
932 975 2.695759 CGAGAGGAGAGTGCGCAGT 61.696 63.158 19.70 19.70 0.00 4.40
933 976 1.153862 GAGAGGAGAGTGCGCAGTG 60.154 63.158 25.09 0.00 0.00 3.66
934 977 1.590610 GAGAGGAGAGTGCGCAGTGA 61.591 60.000 25.09 0.00 0.00 3.41
935 978 1.153862 GAGGAGAGTGCGCAGTGAG 60.154 63.158 25.09 0.00 0.00 3.51
936 979 1.590610 GAGGAGAGTGCGCAGTGAGA 61.591 60.000 25.09 0.00 0.00 3.27
937 980 1.445238 GGAGAGTGCGCAGTGAGAC 60.445 63.158 25.09 8.12 0.00 3.36
938 981 1.445238 GAGAGTGCGCAGTGAGACC 60.445 63.158 25.09 7.69 0.00 3.85
939 982 2.807045 GAGTGCGCAGTGAGACCG 60.807 66.667 25.09 0.00 0.00 4.79
1064 1148 2.037527 GGAGGTGGAGGACGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
1089 1173 3.077556 GAAGAGGAGGAGCCGCCA 61.078 66.667 11.95 0.00 43.43 5.69
1298 1387 4.465512 GCGCGTCCTTGTGCCATG 62.466 66.667 8.43 0.00 39.42 3.66
1299 1388 2.741985 CGCGTCCTTGTGCCATGA 60.742 61.111 0.00 0.00 0.00 3.07
1300 1389 2.108514 CGCGTCCTTGTGCCATGAT 61.109 57.895 0.00 0.00 0.00 2.45
1370 1459 0.737219 CTTGGGTCGTCCTAGTACCG 59.263 60.000 0.00 0.00 34.35 4.02
1467 1564 0.093705 GTGCATTCGAGTCGTTGCTC 59.906 55.000 29.32 24.96 37.70 4.26
1477 1574 2.354821 GAGTCGTTGCTCTGTTTTGGTT 59.645 45.455 0.00 0.00 32.99 3.67
1540 2538 5.917541 TTCTAGTGTCATTTCGTGTTTCC 57.082 39.130 0.00 0.00 0.00 3.13
1616 2614 4.079253 AGGTGTTGATATTGTGTTGTCCC 58.921 43.478 0.00 0.00 0.00 4.46
1657 2655 9.051679 CGACACAAGTATATTCCATTTTCCATA 57.948 33.333 0.00 0.00 0.00 2.74
1687 2685 4.314121 GCAGAGAAGTGTTTCATCAGACT 58.686 43.478 0.00 0.00 35.70 3.24
1693 2691 6.222389 AGAAGTGTTTCATCAGACTCTGAAG 58.778 40.000 12.83 8.77 44.04 3.02
1737 2735 4.445385 GCCAAATTGCAACTGTTCTGTTAG 59.555 41.667 0.00 0.00 0.00 2.34
1829 2828 8.972127 AGAATGCTCTTAGTGATAACTGTTCTA 58.028 33.333 0.00 0.00 0.00 2.10
1930 2935 6.814954 ATAAATAGTGTCACTGGAGTGGAT 57.185 37.500 16.03 0.00 45.65 3.41
2450 3501 0.321564 TGACCACTGCGGAATTGGAG 60.322 55.000 10.80 0.00 38.63 3.86
2456 3507 1.000274 ACTGCGGAATTGGAGTTTTGC 60.000 47.619 0.00 0.00 37.20 3.68
2485 3590 2.004017 CCATGCATGCAAAATGGACAC 58.996 47.619 27.63 0.00 43.00 3.67
2587 3692 4.144297 CAATTCTGGTTCCTCCAAAGACA 58.856 43.478 0.00 0.00 46.59 3.41
2662 3767 6.816640 CCCGACTCTTTATGATGTAAGTTTCA 59.183 38.462 0.00 0.00 0.00 2.69
2758 3863 9.578576 ACTATGGTATGGTCGTTATTTAGTCTA 57.421 33.333 0.00 0.00 0.00 2.59
2843 3948 7.048629 ACTGTCGATCACTTCATATCTTGAT 57.951 36.000 0.00 0.00 33.34 2.57
2848 3953 5.344396 CGATCACTTCATATCTTGATGGACG 59.656 44.000 0.00 0.00 34.58 4.79
3024 4130 8.801882 TGTATAGGCTTTGTTTGTATTAAGCT 57.198 30.769 0.00 0.00 41.95 3.74
3069 4175 6.659824 TGTGTCCAGATAGTATGTCTGTCTA 58.340 40.000 3.35 0.00 41.56 2.59
3222 4836 7.546667 CCTCCATACTTGATTGAAAAATGTTGG 59.453 37.037 0.00 0.00 0.00 3.77
3265 4994 0.816825 CAGCATGGAACCTCATCCCG 60.817 60.000 0.00 0.00 38.82 5.14
3345 5074 2.843401 TAACGGCACTTGAGGCTTAA 57.157 45.000 0.00 0.00 0.00 1.85
3465 5194 7.014230 CCGTAATGGAATGGTAGGATGAAAAAT 59.986 37.037 0.00 0.00 42.00 1.82
3480 5209 7.846823 AGGATGAAAAATAGAAGTCCTAGAGGA 59.153 37.037 0.00 0.00 43.08 3.71
3570 5299 0.846693 ACCAGGCTATTGGGTGGATC 59.153 55.000 7.24 0.00 42.76 3.36
3575 5304 1.479389 GGCTATTGGGTGGATCTTGGG 60.479 57.143 0.00 0.00 0.00 4.12
3622 5351 5.221621 CCATGGTGTTTGGGTTAAATTCACT 60.222 40.000 2.57 0.00 30.29 3.41
3668 5397 5.006746 CACTTGTTCTAGCGAGAGTTTTTGT 59.993 40.000 0.00 0.00 31.77 2.83
3716 5445 8.179509 TGCTACTCTAAGTGACTTCTTAACTT 57.820 34.615 0.00 0.00 37.82 2.66
3745 5474 4.871871 TGGGCCAAATAGATGGAAACTA 57.128 40.909 2.13 0.00 43.54 2.24
3803 5532 1.123861 TTCTGCCAGCACTCACCTCT 61.124 55.000 0.00 0.00 0.00 3.69
3811 5547 3.317711 CCAGCACTCACCTCTAGATACAG 59.682 52.174 0.00 0.00 0.00 2.74
3914 5651 7.042658 GCCAAATATACTGTTGTACTGTCTAGC 60.043 40.741 0.00 0.00 32.45 3.42
3916 5653 9.534565 CAAATATACTGTTGTACTGTCTAGCAT 57.465 33.333 0.00 0.00 32.45 3.79
3917 5654 9.534565 AAATATACTGTTGTACTGTCTAGCATG 57.465 33.333 0.00 0.00 32.45 4.06
3918 5655 3.589988 ACTGTTGTACTGTCTAGCATGC 58.410 45.455 10.51 10.51 0.00 4.06
3936 5676 7.264373 AGCATGCAATTTATAGGTGAAGTAC 57.736 36.000 21.98 0.00 0.00 2.73
4114 5855 8.585018 CAAAAAGGTAGAAATGGTCCTATTTGT 58.415 33.333 4.59 3.87 30.78 2.83
4124 5865 8.421249 AAATGGTCCTATTTGTTTCATTGAGA 57.579 30.769 0.00 0.00 0.00 3.27
4559 6398 0.179018 ACTTTGTCAGGTGCTGGTCC 60.179 55.000 0.00 0.00 31.51 4.46
4573 6412 0.920763 TGGTCCATGGGATTCTGGCT 60.921 55.000 13.02 0.00 32.73 4.75
4581 6420 1.144936 GGATTCTGGCTGAGGTCGG 59.855 63.158 0.00 0.00 0.00 4.79
4666 6505 4.910304 ACCCATGATTAGAGCCTTATGAGT 59.090 41.667 0.00 0.00 0.00 3.41
4765 6610 9.729023 TGATTTTCTATTAATAACAACGGCATG 57.271 29.630 0.00 0.00 0.00 4.06
5023 6869 6.574350 CCTTGGACTACAGGTACTTATCTTG 58.426 44.000 0.00 0.00 34.60 3.02
5028 6874 7.148188 TGGACTACAGGTACTTATCTTGTAACG 60.148 40.741 0.00 0.00 34.60 3.18
5146 6998 2.328655 GCTGTTTGAGCTTCTCTTGC 57.671 50.000 0.00 0.00 45.21 4.01
5164 7016 3.542969 TGCATAGCTGGTATCCCTAGA 57.457 47.619 0.00 0.00 0.00 2.43
5188 7040 2.650602 GGTGTGCGTTTGTGTGCG 60.651 61.111 0.00 0.00 0.00 5.34
5226 7081 7.364970 GTTGTGGCTTTATATATAAAACGGGG 58.635 38.462 16.69 7.83 32.39 5.73
5227 7082 6.603224 TGTGGCTTTATATATAAAACGGGGT 58.397 36.000 16.69 0.00 32.39 4.95
5228 7083 6.487331 TGTGGCTTTATATATAAAACGGGGTG 59.513 38.462 16.69 6.67 32.39 4.61
5232 7087 8.294577 GGCTTTATATATAAAACGGGGTGAAAG 58.705 37.037 16.69 5.83 32.39 2.62
5233 7088 7.806487 GCTTTATATATAAAACGGGGTGAAAGC 59.194 37.037 16.69 10.91 37.71 3.51
5235 7090 8.000127 TTTATATATAAAACGGGGTGAAAGCCT 59.000 33.333 14.26 0.00 40.75 4.58
5771 7664 6.016192 TGCATTGAAACCAAATTACTCGGTAA 60.016 34.615 0.00 0.01 31.12 2.85
5809 7702 7.934665 TCTGTTAACTGCCTGTTATGTTTCTTA 59.065 33.333 7.22 0.00 40.41 2.10
5907 7800 4.393062 CGCTTGATGGTAAGATTCAGTTGT 59.607 41.667 0.00 0.00 0.00 3.32
5908 7801 5.580691 CGCTTGATGGTAAGATTCAGTTGTA 59.419 40.000 0.00 0.00 0.00 2.41
5909 7802 6.455646 CGCTTGATGGTAAGATTCAGTTGTAC 60.456 42.308 0.00 0.00 0.00 2.90
5910 7803 6.371548 GCTTGATGGTAAGATTCAGTTGTACA 59.628 38.462 0.00 0.00 0.00 2.90
5918 7811 9.391006 GGTAAGATTCAGTTGTACATATTTCCA 57.609 33.333 0.00 0.00 0.00 3.53
5926 7819 8.977412 TCAGTTGTACATATTTCCAGATACTCA 58.023 33.333 0.00 0.00 0.00 3.41
5981 7918 3.077359 GCTAAGAAGTTGATGTGGCTGT 58.923 45.455 0.00 0.00 0.00 4.40
6070 8010 5.885449 ATTCATGAGAAAGCTAGTAGCCT 57.115 39.130 18.65 8.76 37.50 4.58
6071 8011 6.985653 ATTCATGAGAAAGCTAGTAGCCTA 57.014 37.500 18.65 0.00 37.50 3.93
6072 8012 6.398234 TTCATGAGAAAGCTAGTAGCCTAG 57.602 41.667 18.65 0.00 43.77 3.02
6073 8013 4.830046 TCATGAGAAAGCTAGTAGCCTAGG 59.170 45.833 18.65 3.67 43.77 3.02
6074 8014 3.567397 TGAGAAAGCTAGTAGCCTAGGG 58.433 50.000 18.65 0.00 43.77 3.53
6075 8015 2.894765 GAGAAAGCTAGTAGCCTAGGGG 59.105 54.545 18.65 0.00 43.77 4.79
6076 8016 2.518834 AGAAAGCTAGTAGCCTAGGGGA 59.481 50.000 18.65 0.00 43.77 4.81
6133 8073 4.355543 TCTTGAATATTGCTTTGTCGGC 57.644 40.909 0.00 0.00 0.00 5.54
6428 8368 7.255277 GGAGTTACTGATTTCTGTTTCTGCTTT 60.255 37.037 0.00 0.00 0.00 3.51
6513 8453 1.747355 CCAGCCTCCATCACAATCAAC 59.253 52.381 0.00 0.00 0.00 3.18
6520 8460 2.038426 TCCATCACAATCAACGGACAGT 59.962 45.455 0.00 0.00 0.00 3.55
6681 8621 8.424731 GTTGCTTTTATTCGTTTGTTCTATTGG 58.575 33.333 0.00 0.00 0.00 3.16
6997 8937 5.422331 TGATCGGTAACTCATTTCTTCCTCT 59.578 40.000 0.00 0.00 0.00 3.69
7006 8946 7.264294 ACTCATTTCTTCCTCTTGGTAAGAT 57.736 36.000 0.00 0.00 36.82 2.40
7105 9045 9.797556 AAAGTCTACACTTAATTGTCAAAAACC 57.202 29.630 1.18 0.00 42.45 3.27
7112 9052 7.815549 ACACTTAATTGTCAAAAACCGTCTTTT 59.184 29.630 0.00 0.00 0.00 2.27
7130 9070 6.183360 CGTCTTTTCAAGTAGGGATGACAATC 60.183 42.308 0.00 0.00 0.00 2.67
7136 9076 4.946478 AGTAGGGATGACAATCTGTAGC 57.054 45.455 0.00 0.00 32.95 3.58
7153 9093 0.251073 AGCGTATGGGTGGGTACAAC 59.749 55.000 0.00 0.00 0.00 3.32
7176 9116 1.277842 CCTTTTGCCCAAACCCATACC 59.722 52.381 0.00 0.00 0.00 2.73
7195 9135 4.993705 ACCCACAGAAACCTTCTATTCA 57.006 40.909 0.00 0.00 38.11 2.57
7196 9136 4.652822 ACCCACAGAAACCTTCTATTCAC 58.347 43.478 0.00 0.00 38.11 3.18
7260 9200 6.899393 TTCCAAGCTTCACATTTTGTATCT 57.101 33.333 0.00 0.00 0.00 1.98
7375 9316 0.269173 AGCCCCTCACCCTAATAGCT 59.731 55.000 0.00 0.00 0.00 3.32
7422 9363 4.402474 GGCTTTGTCACCTTATTATGCCTT 59.598 41.667 0.00 0.00 34.42 4.35
7443 9384 3.798794 CCCTCGGCATATTGTTGGA 57.201 52.632 0.00 0.00 0.00 3.53
7447 9388 3.278574 CCTCGGCATATTGTTGGAAAGA 58.721 45.455 0.00 0.00 0.00 2.52
7451 9392 5.192927 TCGGCATATTGTTGGAAAGAGAAT 58.807 37.500 0.00 0.00 0.00 2.40
7452 9393 5.066375 TCGGCATATTGTTGGAAAGAGAATG 59.934 40.000 0.00 0.00 0.00 2.67
7453 9394 5.066375 CGGCATATTGTTGGAAAGAGAATGA 59.934 40.000 0.00 0.00 0.00 2.57
7454 9395 6.268566 GGCATATTGTTGGAAAGAGAATGAC 58.731 40.000 0.00 0.00 0.00 3.06
7455 9396 6.127647 GGCATATTGTTGGAAAGAGAATGACA 60.128 38.462 0.00 0.00 0.00 3.58
7456 9397 7.417116 GGCATATTGTTGGAAAGAGAATGACAT 60.417 37.037 0.00 0.00 0.00 3.06
7457 9398 7.977853 GCATATTGTTGGAAAGAGAATGACATT 59.022 33.333 0.00 0.00 0.00 2.71
7462 9403 9.748708 TTGTTGGAAAGAGAATGACATTAAAAG 57.251 29.630 0.00 0.00 0.00 2.27
7463 9404 9.130661 TGTTGGAAAGAGAATGACATTAAAAGA 57.869 29.630 0.00 0.00 0.00 2.52
7466 9407 9.519191 TGGAAAGAGAATGACATTAAAAGATGA 57.481 29.630 0.00 0.00 0.00 2.92
7473 9414 9.932207 AGAATGACATTAAAAGATGAAAATGCA 57.068 25.926 0.00 0.00 33.57 3.96
7476 9417 9.661563 ATGACATTAAAAGATGAAAATGCATGT 57.338 25.926 0.00 0.00 33.57 3.21
7477 9418 8.927721 TGACATTAAAAGATGAAAATGCATGTG 58.072 29.630 0.00 0.00 33.57 3.21
7478 9419 8.259049 ACATTAAAAGATGAAAATGCATGTGG 57.741 30.769 0.00 0.00 33.57 4.17
7479 9420 7.879160 ACATTAAAAGATGAAAATGCATGTGGT 59.121 29.630 0.00 0.00 33.57 4.16
7480 9421 7.887996 TTAAAAGATGAAAATGCATGTGGTC 57.112 32.000 0.00 0.00 0.00 4.02
7481 9422 5.471556 AAAGATGAAAATGCATGTGGTCA 57.528 34.783 0.00 0.00 0.00 4.02
7482 9423 5.471556 AAGATGAAAATGCATGTGGTCAA 57.528 34.783 0.00 0.00 0.00 3.18
7483 9424 5.670792 AGATGAAAATGCATGTGGTCAAT 57.329 34.783 0.00 0.00 0.00 2.57
7484 9425 6.778834 AGATGAAAATGCATGTGGTCAATA 57.221 33.333 0.00 0.00 0.00 1.90
7485 9426 6.802608 AGATGAAAATGCATGTGGTCAATAG 58.197 36.000 0.00 0.00 0.00 1.73
7486 9427 4.746729 TGAAAATGCATGTGGTCAATAGC 58.253 39.130 0.00 0.00 0.00 2.97
7487 9428 4.463539 TGAAAATGCATGTGGTCAATAGCT 59.536 37.500 0.00 0.00 0.00 3.32
7488 9429 5.651576 TGAAAATGCATGTGGTCAATAGCTA 59.348 36.000 0.00 0.00 0.00 3.32
7489 9430 5.762825 AAATGCATGTGGTCAATAGCTAG 57.237 39.130 0.00 0.00 0.00 3.42
7490 9431 2.564771 TGCATGTGGTCAATAGCTAGC 58.435 47.619 6.62 6.62 0.00 3.42
7491 9432 1.876156 GCATGTGGTCAATAGCTAGCC 59.124 52.381 12.13 0.00 0.00 3.93
7492 9433 2.498167 CATGTGGTCAATAGCTAGCCC 58.502 52.381 12.13 4.68 0.00 5.19
7493 9434 1.578897 TGTGGTCAATAGCTAGCCCA 58.421 50.000 12.13 7.62 0.00 5.36
7494 9435 2.126882 TGTGGTCAATAGCTAGCCCAT 58.873 47.619 12.13 1.89 0.00 4.00
7495 9436 2.158769 TGTGGTCAATAGCTAGCCCATG 60.159 50.000 12.13 7.99 0.00 3.66
7496 9437 2.126882 TGGTCAATAGCTAGCCCATGT 58.873 47.619 12.13 0.00 0.00 3.21
7497 9438 3.071023 GTGGTCAATAGCTAGCCCATGTA 59.929 47.826 12.13 0.00 0.00 2.29
7498 9439 3.071023 TGGTCAATAGCTAGCCCATGTAC 59.929 47.826 12.13 7.14 0.00 2.90
7499 9440 3.071023 GGTCAATAGCTAGCCCATGTACA 59.929 47.826 12.13 0.00 0.00 2.90
7500 9441 4.444306 GGTCAATAGCTAGCCCATGTACAA 60.444 45.833 12.13 0.00 0.00 2.41
7501 9442 4.752101 GTCAATAGCTAGCCCATGTACAAG 59.248 45.833 12.13 0.00 0.00 3.16
7502 9443 4.408921 TCAATAGCTAGCCCATGTACAAGT 59.591 41.667 12.13 0.00 0.00 3.16
7503 9444 5.600898 TCAATAGCTAGCCCATGTACAAGTA 59.399 40.000 12.13 0.00 0.00 2.24
7504 9445 3.821421 AGCTAGCCCATGTACAAGTAC 57.179 47.619 12.13 3.47 36.63 2.73
7505 9446 2.100916 AGCTAGCCCATGTACAAGTACG 59.899 50.000 12.13 0.00 38.85 3.67
7506 9447 2.159142 GCTAGCCCATGTACAAGTACGT 60.159 50.000 2.29 0.00 38.85 3.57
7507 9448 3.067180 GCTAGCCCATGTACAAGTACGTA 59.933 47.826 2.29 0.00 38.85 3.57
7508 9449 3.795623 AGCCCATGTACAAGTACGTAG 57.204 47.619 0.00 0.00 38.85 3.51
7509 9450 2.429610 AGCCCATGTACAAGTACGTAGG 59.570 50.000 11.25 11.25 37.06 3.18
7510 9451 2.817901 CCCATGTACAAGTACGTAGGC 58.182 52.381 0.00 0.00 38.85 3.93
7511 9452 2.482490 CCCATGTACAAGTACGTAGGCC 60.482 54.545 0.00 0.00 38.85 5.19
7512 9453 2.429610 CCATGTACAAGTACGTAGGCCT 59.570 50.000 11.78 11.78 38.85 5.19
7513 9454 3.490419 CCATGTACAAGTACGTAGGCCTC 60.490 52.174 9.68 0.00 38.85 4.70
7514 9455 1.739466 TGTACAAGTACGTAGGCCTCG 59.261 52.381 9.68 16.02 38.85 4.63
7515 9456 0.734889 TACAAGTACGTAGGCCTCGC 59.265 55.000 9.68 2.08 0.00 5.03
7516 9457 1.585521 CAAGTACGTAGGCCTCGCG 60.586 63.158 22.97 22.97 0.00 5.87
7517 9458 3.407046 AAGTACGTAGGCCTCGCGC 62.407 63.158 24.07 16.06 0.00 6.86
7518 9459 3.885521 GTACGTAGGCCTCGCGCT 61.886 66.667 24.07 15.69 37.74 5.92
7519 9460 3.884350 TACGTAGGCCTCGCGCTG 61.884 66.667 24.07 6.86 37.74 5.18
7522 9463 4.577246 GTAGGCCTCGCGCTGGAG 62.577 72.222 9.68 12.22 37.74 3.86
7528 9469 2.826287 CTCGCGCTGGAGGAGAGA 60.826 66.667 5.56 0.00 0.00 3.10
7529 9470 3.119709 CTCGCGCTGGAGGAGAGAC 62.120 68.421 5.56 0.00 0.00 3.36
7530 9471 4.200283 CGCGCTGGAGGAGAGACC 62.200 72.222 5.56 0.00 39.35 3.85
7545 9486 3.110031 ACCTGGGGGTTGGCACTT 61.110 61.111 0.00 0.00 44.73 3.16
7546 9487 2.601367 CCTGGGGGTTGGCACTTG 60.601 66.667 0.00 0.00 0.00 3.16
7547 9488 2.601367 CTGGGGGTTGGCACTTGG 60.601 66.667 0.00 0.00 0.00 3.61
7548 9489 3.434179 TGGGGGTTGGCACTTGGT 61.434 61.111 0.00 0.00 0.00 3.67
7549 9490 2.075355 CTGGGGGTTGGCACTTGGTA 62.075 60.000 0.00 0.00 0.00 3.25
7550 9491 1.605451 GGGGGTTGGCACTTGGTAC 60.605 63.158 0.00 0.00 0.00 3.34
7551 9492 1.151908 GGGGTTGGCACTTGGTACA 59.848 57.895 0.00 0.00 0.00 2.90
7552 9493 0.893727 GGGGTTGGCACTTGGTACAG 60.894 60.000 0.00 0.00 42.39 2.74
7553 9494 0.893727 GGGTTGGCACTTGGTACAGG 60.894 60.000 0.00 0.00 42.39 4.00
7554 9495 0.893727 GGTTGGCACTTGGTACAGGG 60.894 60.000 0.00 0.00 40.91 4.45
7555 9496 1.228429 TTGGCACTTGGTACAGGGC 60.228 57.895 0.00 0.00 40.91 5.19
7556 9497 2.000825 TTGGCACTTGGTACAGGGCA 62.001 55.000 9.44 2.37 40.91 5.36
7557 9498 1.971695 GGCACTTGGTACAGGGCAC 60.972 63.158 9.44 0.00 40.91 5.01
7570 9511 4.242602 GGCACCCCTATGCTTCAC 57.757 61.111 0.00 0.00 45.38 3.18
7571 9512 1.819632 GGCACCCCTATGCTTCACG 60.820 63.158 0.00 0.00 45.38 4.35
7572 9513 2.472909 GCACCCCTATGCTTCACGC 61.473 63.158 0.00 0.00 42.62 5.34
7573 9514 2.173669 CACCCCTATGCTTCACGCG 61.174 63.158 3.53 3.53 43.27 6.01
7574 9515 2.355986 ACCCCTATGCTTCACGCGA 61.356 57.895 15.93 0.00 43.27 5.87
7575 9516 1.592669 CCCCTATGCTTCACGCGAG 60.593 63.158 15.93 4.59 43.27 5.03
7576 9517 1.437573 CCCTATGCTTCACGCGAGA 59.562 57.895 15.93 7.99 43.27 4.04
7577 9518 0.872021 CCCTATGCTTCACGCGAGAC 60.872 60.000 15.93 0.00 43.27 3.36
7578 9519 0.179137 CCTATGCTTCACGCGAGACA 60.179 55.000 15.93 6.16 43.27 3.41
7579 9520 1.195347 CTATGCTTCACGCGAGACAG 58.805 55.000 15.93 11.87 43.27 3.51
7580 9521 0.808755 TATGCTTCACGCGAGACAGA 59.191 50.000 15.93 0.00 43.27 3.41
7581 9522 0.457509 ATGCTTCACGCGAGACAGAG 60.458 55.000 15.93 6.20 43.27 3.35
7582 9523 1.803519 GCTTCACGCGAGACAGAGG 60.804 63.158 15.93 4.11 0.00 3.69
7583 9524 1.153939 CTTCACGCGAGACAGAGGG 60.154 63.158 15.93 0.00 0.00 4.30
7584 9525 1.587043 CTTCACGCGAGACAGAGGGA 61.587 60.000 15.93 0.00 0.00 4.20
7585 9526 1.176619 TTCACGCGAGACAGAGGGAA 61.177 55.000 15.93 0.00 31.09 3.97
7586 9527 1.444553 CACGCGAGACAGAGGGAAC 60.445 63.158 15.93 0.00 0.00 3.62
7635 9576 4.803426 CGCGGGAGACACAGCCTC 62.803 72.222 0.00 0.00 0.00 4.70
7636 9577 3.695606 GCGGGAGACACAGCCTCA 61.696 66.667 0.00 0.00 32.48 3.86
7637 9578 3.059982 CGGGAGACACAGCCTCAA 58.940 61.111 0.00 0.00 32.48 3.02
7638 9579 1.599047 CGGGAGACACAGCCTCAAT 59.401 57.895 0.00 0.00 32.48 2.57
7639 9580 0.036010 CGGGAGACACAGCCTCAATT 60.036 55.000 0.00 0.00 32.48 2.32
7640 9581 1.611673 CGGGAGACACAGCCTCAATTT 60.612 52.381 0.00 0.00 32.48 1.82
7641 9582 2.519013 GGGAGACACAGCCTCAATTTT 58.481 47.619 0.00 0.00 32.48 1.82
7642 9583 2.893489 GGGAGACACAGCCTCAATTTTT 59.107 45.455 0.00 0.00 32.48 1.94
7643 9584 4.079253 GGGAGACACAGCCTCAATTTTTA 58.921 43.478 0.00 0.00 32.48 1.52
7644 9585 4.706962 GGGAGACACAGCCTCAATTTTTAT 59.293 41.667 0.00 0.00 32.48 1.40
7645 9586 5.185828 GGGAGACACAGCCTCAATTTTTATT 59.814 40.000 0.00 0.00 32.48 1.40
7646 9587 6.295292 GGGAGACACAGCCTCAATTTTTATTT 60.295 38.462 0.00 0.00 32.48 1.40
7647 9588 7.154656 GGAGACACAGCCTCAATTTTTATTTT 58.845 34.615 0.00 0.00 32.48 1.82
7648 9589 7.657354 GGAGACACAGCCTCAATTTTTATTTTT 59.343 33.333 0.00 0.00 32.48 1.94
7649 9590 9.691362 GAGACACAGCCTCAATTTTTATTTTTA 57.309 29.630 0.00 0.00 0.00 1.52
7667 9608 9.833917 TTATTTTTATTTTTCACGTTTTCCCCT 57.166 25.926 0.00 0.00 0.00 4.79
7668 9609 8.740123 ATTTTTATTTTTCACGTTTTCCCCTT 57.260 26.923 0.00 0.00 0.00 3.95
7669 9610 8.563123 TTTTTATTTTTCACGTTTTCCCCTTT 57.437 26.923 0.00 0.00 0.00 3.11
7670 9611 8.563123 TTTTATTTTTCACGTTTTCCCCTTTT 57.437 26.923 0.00 0.00 0.00 2.27
7671 9612 8.563123 TTTATTTTTCACGTTTTCCCCTTTTT 57.437 26.923 0.00 0.00 0.00 1.94
7672 9613 5.864628 TTTTTCACGTTTTCCCCTTTTTG 57.135 34.783 0.00 0.00 0.00 2.44
7673 9614 3.528597 TTCACGTTTTCCCCTTTTTGG 57.471 42.857 0.00 0.00 0.00 3.28
7674 9615 2.458620 TCACGTTTTCCCCTTTTTGGT 58.541 42.857 0.00 0.00 0.00 3.67
7675 9616 2.832733 TCACGTTTTCCCCTTTTTGGTT 59.167 40.909 0.00 0.00 0.00 3.67
7676 9617 3.119065 TCACGTTTTCCCCTTTTTGGTTC 60.119 43.478 0.00 0.00 0.00 3.62
7677 9618 3.101437 ACGTTTTCCCCTTTTTGGTTCT 58.899 40.909 0.00 0.00 0.00 3.01
7678 9619 3.516300 ACGTTTTCCCCTTTTTGGTTCTT 59.484 39.130 0.00 0.00 0.00 2.52
7679 9620 4.020039 ACGTTTTCCCCTTTTTGGTTCTTT 60.020 37.500 0.00 0.00 0.00 2.52
7680 9621 4.938832 CGTTTTCCCCTTTTTGGTTCTTTT 59.061 37.500 0.00 0.00 0.00 2.27
7681 9622 5.413213 CGTTTTCCCCTTTTTGGTTCTTTTT 59.587 36.000 0.00 0.00 0.00 1.94
7758 9699 9.643693 AGTGATAAACATTTGAAAATGATGACC 57.356 29.630 19.85 8.32 46.72 4.02
7759 9700 9.421806 GTGATAAACATTTGAAAATGATGACCA 57.578 29.630 19.85 10.25 46.72 4.02
7760 9701 9.993454 TGATAAACATTTGAAAATGATGACCAA 57.007 25.926 19.85 2.03 46.72 3.67
7763 9704 6.790285 ACATTTGAAAATGATGACCAAAGC 57.210 33.333 19.85 0.00 46.72 3.51
7764 9705 6.289834 ACATTTGAAAATGATGACCAAAGCA 58.710 32.000 19.85 0.00 46.72 3.91
7765 9706 6.938030 ACATTTGAAAATGATGACCAAAGCAT 59.062 30.769 19.85 0.00 46.72 3.79
7766 9707 7.446013 ACATTTGAAAATGATGACCAAAGCATT 59.554 29.630 19.85 0.00 46.72 3.56
7767 9708 7.804843 TTTGAAAATGATGACCAAAGCATTT 57.195 28.000 0.00 0.00 41.27 2.32
7807 9748 9.210329 TGTGTATACAGAAAATGTTTATCACGT 57.790 29.630 5.62 0.00 39.96 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.040544 CGCTGGGCTCGTGGAATTT 61.041 57.895 0.00 0.00 0.00 1.82
62 63 0.538287 AAAACTGAGTCTGCTGGGGC 60.538 55.000 0.00 0.00 39.26 5.80
63 64 1.882623 GAAAAACTGAGTCTGCTGGGG 59.117 52.381 0.00 0.00 0.00 4.96
64 65 1.882623 GGAAAAACTGAGTCTGCTGGG 59.117 52.381 0.00 0.00 0.00 4.45
65 66 2.810852 GAGGAAAAACTGAGTCTGCTGG 59.189 50.000 0.00 0.00 0.00 4.85
66 67 2.478134 CGAGGAAAAACTGAGTCTGCTG 59.522 50.000 0.00 0.00 0.00 4.41
67 68 2.365617 TCGAGGAAAAACTGAGTCTGCT 59.634 45.455 0.00 0.00 0.00 4.24
68 69 2.734079 CTCGAGGAAAAACTGAGTCTGC 59.266 50.000 3.91 0.00 0.00 4.26
69 70 4.244425 TCTCGAGGAAAAACTGAGTCTG 57.756 45.455 13.56 0.00 0.00 3.51
77 78 3.403968 AGGCTTCTTCTCGAGGAAAAAC 58.596 45.455 13.56 0.00 33.07 2.43
80 81 2.166664 GCTAGGCTTCTTCTCGAGGAAA 59.833 50.000 13.56 0.00 33.07 3.13
88 89 5.068987 CACTTCTAGATGCTAGGCTTCTTCT 59.931 44.000 11.95 1.29 41.92 2.85
125 126 2.203337 TTCGCCTGCAAAGCCTGT 60.203 55.556 2.96 0.00 0.00 4.00
148 149 0.179134 CTAGTCCTCTTGTTCCGGCG 60.179 60.000 0.00 0.00 0.00 6.46
161 162 0.458716 GCGAGTTCTGTGGCTAGTCC 60.459 60.000 0.00 0.00 0.00 3.85
185 186 6.040166 CGTTTTCCTACCCTAGCATCTACTAA 59.960 42.308 0.00 0.00 0.00 2.24
186 187 5.533903 CGTTTTCCTACCCTAGCATCTACTA 59.466 44.000 0.00 0.00 0.00 1.82
361 362 0.909610 TGGAATTCGTGGCCTCTCCT 60.910 55.000 3.32 0.00 35.26 3.69
372 373 0.525761 ATTTGGTGGCGTGGAATTCG 59.474 50.000 0.00 0.00 0.00 3.34
382 383 4.646572 TGGGATTGTTTTTATTTGGTGGC 58.353 39.130 0.00 0.00 0.00 5.01
407 408 4.086706 ACACCGAAGAGGACTGATTTTT 57.913 40.909 0.00 0.00 45.00 1.94
421 422 1.027357 GGATCTAGGCGTACACCGAA 58.973 55.000 0.00 0.00 39.56 4.30
423 424 0.030369 GTGGATCTAGGCGTACACCG 59.970 60.000 0.00 0.00 40.40 4.94
425 426 1.019673 TCGTGGATCTAGGCGTACAC 58.980 55.000 0.00 0.00 0.00 2.90
426 427 1.019673 GTCGTGGATCTAGGCGTACA 58.980 55.000 0.00 0.00 0.00 2.90
427 428 1.019673 TGTCGTGGATCTAGGCGTAC 58.980 55.000 0.00 0.00 0.00 3.67
428 429 1.019673 GTGTCGTGGATCTAGGCGTA 58.980 55.000 0.00 0.00 0.00 4.42
429 430 1.807886 GTGTCGTGGATCTAGGCGT 59.192 57.895 0.00 0.00 0.00 5.68
430 431 1.298413 CGTGTCGTGGATCTAGGCG 60.298 63.158 0.00 0.00 0.00 5.52
431 432 0.248539 GACGTGTCGTGGATCTAGGC 60.249 60.000 0.00 0.00 41.37 3.93
705 727 3.125573 GGGAAAGAAGGCCGCGAC 61.126 66.667 8.23 0.00 0.00 5.19
714 736 2.256306 GAGGGGCATTTTGGGAAAGAA 58.744 47.619 0.00 0.00 0.00 2.52
716 738 0.532115 CGAGGGGCATTTTGGGAAAG 59.468 55.000 0.00 0.00 0.00 2.62
768 805 4.452733 GACGGCCGAGGGTTGAGG 62.453 72.222 35.90 0.00 0.00 3.86
769 806 4.796231 CGACGGCCGAGGGTTGAG 62.796 72.222 35.90 9.24 41.76 3.02
786 828 3.056313 GAAATGCTGCTGACGGGCC 62.056 63.158 0.00 0.00 0.00 5.80
788 830 2.753966 CCGAAATGCTGCTGACGGG 61.754 63.158 15.66 3.59 37.28 5.28
791 833 1.154150 GTGCCGAAATGCTGCTGAC 60.154 57.895 0.00 0.00 0.00 3.51
792 834 2.679934 CGTGCCGAAATGCTGCTGA 61.680 57.895 0.00 0.00 0.00 4.26
793 835 2.202388 CGTGCCGAAATGCTGCTG 60.202 61.111 0.00 0.00 0.00 4.41
794 836 2.669569 ACGTGCCGAAATGCTGCT 60.670 55.556 0.00 0.00 0.00 4.24
795 837 2.202349 GACGTGCCGAAATGCTGC 60.202 61.111 0.00 0.00 0.00 5.25
796 838 1.133253 CTGACGTGCCGAAATGCTG 59.867 57.895 0.00 0.00 0.00 4.41
797 839 2.680913 GCTGACGTGCCGAAATGCT 61.681 57.895 0.00 0.00 0.00 3.79
798 840 2.187599 AAGCTGACGTGCCGAAATGC 62.188 55.000 0.00 0.00 0.00 3.56
799 841 0.453282 CAAGCTGACGTGCCGAAATG 60.453 55.000 0.00 0.00 0.00 2.32
800 842 1.868997 CAAGCTGACGTGCCGAAAT 59.131 52.632 0.00 0.00 0.00 2.17
801 843 2.892334 GCAAGCTGACGTGCCGAAA 61.892 57.895 0.00 0.00 44.41 3.46
802 844 3.345808 GCAAGCTGACGTGCCGAA 61.346 61.111 0.00 0.00 44.41 4.30
906 949 1.022451 ACTCTCCTCTCGTGTCTCGC 61.022 60.000 0.00 0.00 39.67 5.03
907 950 0.724549 CACTCTCCTCTCGTGTCTCG 59.275 60.000 0.00 0.00 41.41 4.04
929 972 3.414700 GCGTTGGCGGTCTCACTG 61.415 66.667 0.00 0.00 38.78 3.66
930 973 3.616721 AGCGTTGGCGGTCTCACT 61.617 61.111 0.00 0.00 46.65 3.41
959 1002 4.770362 TCCACGATCTGGGGCGGA 62.770 66.667 10.23 0.00 41.06 5.54
960 1003 4.530857 GTCCACGATCTGGGGCGG 62.531 72.222 10.23 0.00 41.06 6.13
962 1005 4.176752 GGGTCCACGATCTGGGGC 62.177 72.222 10.23 3.92 41.06 5.80
1064 1148 1.866997 TCCTCCTCTTCCTCCCCCA 60.867 63.158 0.00 0.00 0.00 4.96
1098 1182 3.965539 CTCCTCCTGCTTGGCCGTG 62.966 68.421 0.00 0.00 35.26 4.94
1165 1249 0.171231 TTGATCTCACCGACGAGCTG 59.829 55.000 0.00 0.00 32.75 4.24
1295 1384 5.522824 CAGTACTGAATGGAGTGACATCATG 59.477 44.000 18.45 0.00 0.00 3.07
1296 1385 5.668471 CAGTACTGAATGGAGTGACATCAT 58.332 41.667 18.45 0.00 0.00 2.45
1297 1386 4.621510 GCAGTACTGAATGGAGTGACATCA 60.622 45.833 27.08 0.00 0.00 3.07
1298 1387 3.868077 GCAGTACTGAATGGAGTGACATC 59.132 47.826 27.08 0.00 0.00 3.06
1299 1388 3.261643 TGCAGTACTGAATGGAGTGACAT 59.738 43.478 27.08 0.00 0.00 3.06
1300 1389 2.632512 TGCAGTACTGAATGGAGTGACA 59.367 45.455 27.08 7.67 0.00 3.58
1370 1459 5.397142 GGATTCCATTATCCAAATGGCTC 57.603 43.478 11.16 9.97 45.22 4.70
1437 1534 5.221891 ACTCGAATGCACAATTCACATAC 57.778 39.130 0.00 0.00 44.34 2.39
1438 1535 4.032786 CGACTCGAATGCACAATTCACATA 59.967 41.667 0.00 0.00 44.34 2.29
1439 1536 3.181517 CGACTCGAATGCACAATTCACAT 60.182 43.478 0.00 0.00 44.34 3.21
1467 1564 3.066621 TCAGCAGCTAACAACCAAAACAG 59.933 43.478 0.00 0.00 0.00 3.16
1477 1574 7.165460 TGTAGTACTATTTCAGCAGCTAACA 57.835 36.000 5.75 0.00 0.00 2.41
1540 2538 2.146342 CAATTGCCGCTACCCTGATAG 58.854 52.381 0.00 0.00 0.00 2.08
1657 2655 5.316167 TGAAACACTTCTCTGCCAATACAT 58.684 37.500 0.00 0.00 32.33 2.29
1687 2685 3.884693 TGATGCAAAACAGCTTCTTCAGA 59.115 39.130 0.00 0.00 38.90 3.27
1693 2691 2.991190 CCACATGATGCAAAACAGCTTC 59.009 45.455 0.00 0.00 38.68 3.86
1737 2735 8.054236 CAGTTCATTTGTAACGGTATAATCGAC 58.946 37.037 0.00 0.00 32.00 4.20
1781 2780 6.565234 TCTTGCAGAATTTTCGTTGGTAAAA 58.435 32.000 0.00 0.00 0.00 1.52
1841 2846 0.253044 TCTCGGCTGGAAAGGATTGG 59.747 55.000 0.00 0.00 0.00 3.16
1930 2935 1.585006 GCGAGAACGACCTTCCTCA 59.415 57.895 0.00 0.00 42.66 3.86
2437 3488 1.669795 GGCAAAACTCCAATTCCGCAG 60.670 52.381 0.00 0.00 0.00 5.18
2450 3501 2.866762 TGCATGGTTTAAACGGCAAAAC 59.133 40.909 21.23 5.38 35.34 2.43
2456 3507 2.360553 TGCATGCATGGTTTAAACGG 57.639 45.000 27.34 5.72 0.00 4.44
2587 3692 0.608640 CAGGCCTCCTCAAGTAACGT 59.391 55.000 0.00 0.00 0.00 3.99
2704 3809 5.565509 TGCACAATATAAACCCAGAGAACA 58.434 37.500 0.00 0.00 0.00 3.18
2741 3846 8.472413 AGCTTAACATAGACTAAATAACGACCA 58.528 33.333 0.00 0.00 0.00 4.02
2888 3993 9.574516 AGTTATAGTATGCCTAAAGGGAAAATG 57.425 33.333 0.00 0.00 39.60 2.32
3024 4130 7.047891 ACACAGTAACATGAGAAAACTTCAGA 58.952 34.615 0.00 0.00 0.00 3.27
3069 4175 6.818644 CACTGCAGACCAAGTAATGTAATAGT 59.181 38.462 23.35 0.00 0.00 2.12
3077 4183 3.149196 CAACCACTGCAGACCAAGTAAT 58.851 45.455 23.35 0.00 0.00 1.89
3222 4836 6.036470 GCTTACTATTCAATTGGCCAAAGTC 58.964 40.000 24.71 4.81 0.00 3.01
3488 5217 8.390921 AGGAAAAATAGACAGGGAAAGATTACA 58.609 33.333 0.00 0.00 0.00 2.41
3497 5226 5.548056 ACTGAGAAGGAAAAATAGACAGGGA 59.452 40.000 0.00 0.00 0.00 4.20
3500 5229 6.370166 GGACACTGAGAAGGAAAAATAGACAG 59.630 42.308 0.00 0.00 0.00 3.51
3512 5241 2.938956 ACCAAAGGACACTGAGAAGG 57.061 50.000 0.00 0.00 0.00 3.46
3570 5299 5.982890 AAACATATGAACCAGAACCCAAG 57.017 39.130 10.38 0.00 0.00 3.61
3575 5304 8.106247 TGGAAGTAAAACATATGAACCAGAAC 57.894 34.615 10.38 0.00 0.00 3.01
3622 5351 5.179368 GTGATTCCATGACTGTTTCGAGAAA 59.821 40.000 0.00 0.00 0.00 2.52
3691 5420 7.762588 AGTTAAGAAGTCACTTAGAGTAGCA 57.237 36.000 0.00 0.00 34.51 3.49
3696 5425 8.070769 GCCAAAAAGTTAAGAAGTCACTTAGAG 58.929 37.037 0.00 0.00 34.51 2.43
3706 5435 3.996363 GCCCATGCCAAAAAGTTAAGAAG 59.004 43.478 0.00 0.00 0.00 2.85
3707 5436 4.001618 GCCCATGCCAAAAAGTTAAGAA 57.998 40.909 0.00 0.00 0.00 2.52
3708 5437 3.676291 GCCCATGCCAAAAAGTTAAGA 57.324 42.857 0.00 0.00 0.00 2.10
3745 5474 7.027874 TGTACCCTTGGAACAGAGAAATTAT 57.972 36.000 0.00 0.00 42.39 1.28
3864 5600 7.591426 GGCATAAAAAGGAATAACTATCAAGCG 59.409 37.037 0.00 0.00 0.00 4.68
3914 5651 7.477144 TCGTACTTCACCTATAAATTGCATG 57.523 36.000 0.00 0.00 0.00 4.06
3916 5653 7.384115 GCTATCGTACTTCACCTATAAATTGCA 59.616 37.037 0.00 0.00 0.00 4.08
3917 5654 7.384115 TGCTATCGTACTTCACCTATAAATTGC 59.616 37.037 0.00 0.00 0.00 3.56
3918 5655 8.812147 TGCTATCGTACTTCACCTATAAATTG 57.188 34.615 0.00 0.00 0.00 2.32
3982 5722 4.517285 TGGACAGCCTTCTCATAATTCAC 58.483 43.478 0.00 0.00 34.31 3.18
4068 5808 9.421806 CTTTTTGTTTCATCTTATATTGTGCCA 57.578 29.630 0.00 0.00 0.00 4.92
4389 6228 2.198827 AGGATGCCAATTGAACGACA 57.801 45.000 7.12 0.00 0.00 4.35
4541 6380 0.179020 TGGACCAGCACCTGACAAAG 60.179 55.000 0.00 0.00 32.44 2.77
4559 6398 0.549950 ACCTCAGCCAGAATCCCATG 59.450 55.000 0.00 0.00 0.00 3.66
4573 6412 1.752198 CCTTCCACAACCGACCTCA 59.248 57.895 0.00 0.00 0.00 3.86
4581 6420 1.228245 TCCTGCTGCCTTCCACAAC 60.228 57.895 0.00 0.00 0.00 3.32
4666 6505 0.391597 AAAAAGAGAGACGGGCGTCA 59.608 50.000 0.00 0.00 46.76 4.35
4699 6539 5.130477 ACCAAAACAAGACTAGGAGAAGACA 59.870 40.000 0.00 0.00 0.00 3.41
5023 6869 5.352643 AGCAAAGATAACAACACCGTTAC 57.647 39.130 0.00 0.00 34.31 2.50
5028 6874 5.236263 CCCAAAAAGCAAAGATAACAACACC 59.764 40.000 0.00 0.00 0.00 4.16
5164 7016 0.968393 ACAAACGCACACCAACCCTT 60.968 50.000 0.00 0.00 0.00 3.95
5188 7040 1.933853 GCCACAACCGATACAGATGAC 59.066 52.381 0.00 0.00 0.00 3.06
5276 7133 1.580845 GCGCTCAGTTCCTGCATTGT 61.581 55.000 0.00 0.00 0.00 2.71
5771 7664 9.260002 CAGGCAGTTAACAGAAAAATTAACAAT 57.740 29.630 8.61 0.00 41.65 2.71
5787 7680 8.511321 CACATAAGAAACATAACAGGCAGTTAA 58.489 33.333 6.58 0.00 45.25 2.01
5809 7702 6.435277 ACATGAATCCTCAGCTTTTTACACAT 59.565 34.615 0.00 0.00 34.23 3.21
5820 7713 2.231215 ACGCTACATGAATCCTCAGC 57.769 50.000 0.00 0.00 34.23 4.26
5821 7714 6.479990 TGAAATAACGCTACATGAATCCTCAG 59.520 38.462 0.00 0.00 34.23 3.35
5825 7718 7.426929 AGATGAAATAACGCTACATGAATCC 57.573 36.000 0.00 0.00 0.00 3.01
5934 7827 9.979270 CTATTACGTATAGGTAACAATAGACCG 57.021 37.037 17.75 0.00 40.91 4.79
6070 8010 1.024536 GCCCTATCCCCTATCCCCTA 58.975 60.000 0.00 0.00 0.00 3.53
6071 8011 0.790355 AGCCCTATCCCCTATCCCCT 60.790 60.000 0.00 0.00 0.00 4.79
6072 8012 0.121402 AAGCCCTATCCCCTATCCCC 59.879 60.000 0.00 0.00 0.00 4.81
6073 8013 1.636003 CAAAGCCCTATCCCCTATCCC 59.364 57.143 0.00 0.00 0.00 3.85
6074 8014 2.632537 TCAAAGCCCTATCCCCTATCC 58.367 52.381 0.00 0.00 0.00 2.59
6075 8015 3.244946 GGTTCAAAGCCCTATCCCCTATC 60.245 52.174 0.00 0.00 0.00 2.08
6076 8016 2.716969 GGTTCAAAGCCCTATCCCCTAT 59.283 50.000 0.00 0.00 0.00 2.57
6513 8453 0.035458 AGGCTTTCTTCCACTGTCCG 59.965 55.000 0.00 0.00 0.00 4.79
6520 8460 1.354101 TTCGGGTAGGCTTTCTTCCA 58.646 50.000 0.00 0.00 34.93 3.53
7062 9002 9.017509 TGTAGACTTTACTTTATCTTTCCTCGA 57.982 33.333 0.00 0.00 0.00 4.04
7112 9052 5.163405 GCTACAGATTGTCATCCCTACTTGA 60.163 44.000 0.00 0.00 0.00 3.02
7130 9070 1.068127 GTACCCACCCATACGCTACAG 59.932 57.143 0.00 0.00 0.00 2.74
7136 9076 3.464207 GGTTGTACCCACCCATACG 57.536 57.895 0.53 0.00 30.04 3.06
7153 9093 2.525124 GGGTTTGGGCAAAAGGGGG 61.525 63.158 0.00 0.00 31.33 5.40
7176 9116 5.308825 AGTGTGAATAGAAGGTTTCTGTGG 58.691 41.667 1.71 0.00 40.94 4.17
7195 9135 4.785301 CCCATGGATATTGAAGTGAGTGT 58.215 43.478 15.22 0.00 0.00 3.55
7196 9136 3.567164 GCCCATGGATATTGAAGTGAGTG 59.433 47.826 15.22 0.00 0.00 3.51
7319 9260 7.779326 TGCATATCCTTTGAGATTAATCCAACA 59.221 33.333 11.92 7.52 0.00 3.33
7326 9267 5.532406 GGCTGTGCATATCCTTTGAGATTAA 59.468 40.000 0.00 0.00 0.00 1.40
7375 9316 3.552890 CGGTGTGTTCAGTGATCTTCTCA 60.553 47.826 0.00 0.00 0.00 3.27
7447 9388 9.932207 TGCATTTTCATCTTTTAATGTCATTCT 57.068 25.926 0.07 0.00 32.10 2.40
7451 9392 8.927721 CACATGCATTTTCATCTTTTAATGTCA 58.072 29.630 0.00 0.00 32.10 3.58
7452 9393 8.385111 CCACATGCATTTTCATCTTTTAATGTC 58.615 33.333 0.00 0.00 32.10 3.06
7453 9394 7.879160 ACCACATGCATTTTCATCTTTTAATGT 59.121 29.630 0.00 0.00 32.10 2.71
7454 9395 8.259049 ACCACATGCATTTTCATCTTTTAATG 57.741 30.769 0.00 0.00 0.00 1.90
7455 9396 8.095792 TGACCACATGCATTTTCATCTTTTAAT 58.904 29.630 0.00 0.00 0.00 1.40
7456 9397 7.440198 TGACCACATGCATTTTCATCTTTTAA 58.560 30.769 0.00 0.00 0.00 1.52
7457 9398 6.990798 TGACCACATGCATTTTCATCTTTTA 58.009 32.000 0.00 0.00 0.00 1.52
7458 9399 5.856156 TGACCACATGCATTTTCATCTTTT 58.144 33.333 0.00 0.00 0.00 2.27
7459 9400 5.471556 TGACCACATGCATTTTCATCTTT 57.528 34.783 0.00 0.00 0.00 2.52
7460 9401 5.471556 TTGACCACATGCATTTTCATCTT 57.528 34.783 0.00 0.00 0.00 2.40
7461 9402 5.670792 ATTGACCACATGCATTTTCATCT 57.329 34.783 0.00 0.00 0.00 2.90
7462 9403 5.461078 GCTATTGACCACATGCATTTTCATC 59.539 40.000 0.00 0.00 0.00 2.92
7463 9404 5.128171 AGCTATTGACCACATGCATTTTCAT 59.872 36.000 0.00 0.00 0.00 2.57
7464 9405 4.463539 AGCTATTGACCACATGCATTTTCA 59.536 37.500 0.00 0.00 0.00 2.69
7465 9406 5.002464 AGCTATTGACCACATGCATTTTC 57.998 39.130 0.00 0.00 0.00 2.29
7466 9407 5.450965 GCTAGCTATTGACCACATGCATTTT 60.451 40.000 7.70 0.00 0.00 1.82
7467 9408 4.037208 GCTAGCTATTGACCACATGCATTT 59.963 41.667 7.70 0.00 0.00 2.32
7468 9409 3.567164 GCTAGCTATTGACCACATGCATT 59.433 43.478 7.70 0.00 0.00 3.56
7469 9410 3.144506 GCTAGCTATTGACCACATGCAT 58.855 45.455 7.70 0.00 0.00 3.96
7470 9411 2.564771 GCTAGCTATTGACCACATGCA 58.435 47.619 7.70 0.00 0.00 3.96
7471 9412 1.876156 GGCTAGCTATTGACCACATGC 59.124 52.381 15.72 0.00 0.00 4.06
7472 9413 2.158769 TGGGCTAGCTATTGACCACATG 60.159 50.000 15.72 0.00 0.00 3.21
7473 9414 2.126882 TGGGCTAGCTATTGACCACAT 58.873 47.619 15.72 0.00 0.00 3.21
7474 9415 1.578897 TGGGCTAGCTATTGACCACA 58.421 50.000 15.72 0.00 0.00 4.17
7475 9416 2.158755 ACATGGGCTAGCTATTGACCAC 60.159 50.000 15.72 0.00 0.00 4.16
7476 9417 2.126882 ACATGGGCTAGCTATTGACCA 58.873 47.619 15.72 9.88 0.00 4.02
7477 9418 2.938956 ACATGGGCTAGCTATTGACC 57.061 50.000 15.72 6.59 0.00 4.02
7478 9419 4.336889 TGTACATGGGCTAGCTATTGAC 57.663 45.455 15.72 9.78 0.00 3.18
7479 9420 4.408921 ACTTGTACATGGGCTAGCTATTGA 59.591 41.667 15.72 0.00 0.00 2.57
7480 9421 4.708177 ACTTGTACATGGGCTAGCTATTG 58.292 43.478 15.72 11.64 0.00 1.90
7481 9422 5.509163 CGTACTTGTACATGGGCTAGCTATT 60.509 44.000 15.72 0.00 0.00 1.73
7482 9423 4.022242 CGTACTTGTACATGGGCTAGCTAT 60.022 45.833 15.72 6.94 0.00 2.97
7483 9424 3.317149 CGTACTTGTACATGGGCTAGCTA 59.683 47.826 15.72 4.59 0.00 3.32
7484 9425 2.100916 CGTACTTGTACATGGGCTAGCT 59.899 50.000 15.72 0.00 0.00 3.32
7485 9426 2.159142 ACGTACTTGTACATGGGCTAGC 60.159 50.000 6.04 6.04 0.00 3.42
7486 9427 3.795623 ACGTACTTGTACATGGGCTAG 57.204 47.619 12.86 1.36 0.00 3.42
7487 9428 3.633525 CCTACGTACTTGTACATGGGCTA 59.366 47.826 12.86 0.00 0.00 3.93
7488 9429 2.429610 CCTACGTACTTGTACATGGGCT 59.570 50.000 12.86 0.00 0.00 5.19
7489 9430 2.817901 CCTACGTACTTGTACATGGGC 58.182 52.381 12.86 4.68 0.00 5.36
7490 9431 2.482490 GGCCTACGTACTTGTACATGGG 60.482 54.545 12.86 8.10 0.00 4.00
7491 9432 2.429610 AGGCCTACGTACTTGTACATGG 59.570 50.000 1.29 9.52 0.00 3.66
7492 9433 3.703420 GAGGCCTACGTACTTGTACATG 58.297 50.000 4.42 7.18 0.00 3.21
7493 9434 2.357009 CGAGGCCTACGTACTTGTACAT 59.643 50.000 4.42 0.00 0.00 2.29
7494 9435 1.739466 CGAGGCCTACGTACTTGTACA 59.261 52.381 4.42 0.00 0.00 2.90
7495 9436 1.532713 GCGAGGCCTACGTACTTGTAC 60.533 57.143 20.69 1.13 0.00 2.90
7496 9437 0.734889 GCGAGGCCTACGTACTTGTA 59.265 55.000 20.69 0.00 0.00 2.41
7497 9438 1.509923 GCGAGGCCTACGTACTTGT 59.490 57.895 20.69 0.00 0.00 3.16
7498 9439 1.585521 CGCGAGGCCTACGTACTTG 60.586 63.158 20.69 0.00 0.00 3.16
7499 9440 2.796651 CGCGAGGCCTACGTACTT 59.203 61.111 20.69 0.00 0.00 2.24
7500 9441 3.885521 GCGCGAGGCCTACGTACT 61.886 66.667 24.12 0.00 34.80 2.73
7501 9442 3.885521 AGCGCGAGGCCTACGTAC 61.886 66.667 24.12 16.07 45.17 3.67
7502 9443 3.884350 CAGCGCGAGGCCTACGTA 61.884 66.667 24.12 0.00 45.17 3.57
7505 9446 4.577246 CTCCAGCGCGAGGCCTAC 62.577 72.222 12.10 0.00 45.17 3.18
7511 9452 2.826287 TCTCTCCTCCAGCGCGAG 60.826 66.667 12.10 3.12 0.00 5.03
7512 9453 3.134792 GTCTCTCCTCCAGCGCGA 61.135 66.667 12.10 0.00 0.00 5.87
7513 9454 4.200283 GGTCTCTCCTCCAGCGCG 62.200 72.222 0.00 0.00 0.00 6.86
7514 9455 2.757917 AGGTCTCTCCTCCAGCGC 60.758 66.667 0.00 0.00 44.42 5.92
7515 9456 2.422231 CCAGGTCTCTCCTCCAGCG 61.422 68.421 0.00 0.00 46.24 5.18
7516 9457 2.063378 CCCAGGTCTCTCCTCCAGC 61.063 68.421 0.00 0.00 46.24 4.85
7517 9458 1.382420 CCCCAGGTCTCTCCTCCAG 60.382 68.421 0.00 0.00 46.24 3.86
7518 9459 2.780693 CCCCAGGTCTCTCCTCCA 59.219 66.667 0.00 0.00 46.24 3.86
7519 9460 2.041405 CCCCCAGGTCTCTCCTCC 60.041 72.222 0.00 0.00 46.24 4.30
7520 9461 2.781406 ACCCCCAGGTCTCTCCTC 59.219 66.667 0.00 0.00 46.45 3.71
7529 9470 2.601367 CAAGTGCCAACCCCCAGG 60.601 66.667 0.00 0.00 40.04 4.45
7530 9471 2.075355 TACCAAGTGCCAACCCCCAG 62.075 60.000 0.00 0.00 0.00 4.45
7531 9472 2.085562 TACCAAGTGCCAACCCCCA 61.086 57.895 0.00 0.00 0.00 4.96
7532 9473 1.605451 GTACCAAGTGCCAACCCCC 60.605 63.158 0.00 0.00 0.00 5.40
7533 9474 0.893727 CTGTACCAAGTGCCAACCCC 60.894 60.000 0.00 0.00 0.00 4.95
7534 9475 0.893727 CCTGTACCAAGTGCCAACCC 60.894 60.000 0.00 0.00 0.00 4.11
7535 9476 0.893727 CCCTGTACCAAGTGCCAACC 60.894 60.000 0.00 0.00 0.00 3.77
7536 9477 1.524008 GCCCTGTACCAAGTGCCAAC 61.524 60.000 0.00 0.00 0.00 3.77
7537 9478 1.228429 GCCCTGTACCAAGTGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
7538 9479 2.434331 GCCCTGTACCAAGTGCCA 59.566 61.111 0.00 0.00 0.00 4.92
7539 9480 1.971695 GTGCCCTGTACCAAGTGCC 60.972 63.158 0.00 0.00 0.00 5.01
7540 9481 1.971695 GGTGCCCTGTACCAAGTGC 60.972 63.158 0.00 0.00 38.20 4.40
7541 9482 1.303317 GGGTGCCCTGTACCAAGTG 60.303 63.158 0.00 0.00 40.07 3.16
7542 9483 2.535331 GGGGTGCCCTGTACCAAGT 61.535 63.158 7.26 0.00 40.07 3.16
7543 9484 2.355115 GGGGTGCCCTGTACCAAG 59.645 66.667 7.26 0.00 40.07 3.61
7552 9493 1.453928 GTGAAGCATAGGGGTGCCC 60.454 63.158 0.00 0.00 46.19 5.36
7553 9494 1.819632 CGTGAAGCATAGGGGTGCC 60.820 63.158 0.00 0.00 46.19 5.01
7554 9495 3.813596 CGTGAAGCATAGGGGTGC 58.186 61.111 0.00 0.00 45.38 5.01
7564 9505 1.803519 CCTCTGTCTCGCGTGAAGC 60.804 63.158 13.07 2.07 43.95 3.86
7565 9506 1.153939 CCCTCTGTCTCGCGTGAAG 60.154 63.158 13.07 12.12 0.00 3.02
7566 9507 1.176619 TTCCCTCTGTCTCGCGTGAA 61.177 55.000 13.07 2.99 0.00 3.18
7567 9508 1.602605 TTCCCTCTGTCTCGCGTGA 60.603 57.895 5.77 6.33 0.00 4.35
7568 9509 1.444553 GTTCCCTCTGTCTCGCGTG 60.445 63.158 5.77 3.13 0.00 5.34
7569 9510 2.637383 GGTTCCCTCTGTCTCGCGT 61.637 63.158 5.77 0.00 0.00 6.01
7570 9511 2.182030 GGTTCCCTCTGTCTCGCG 59.818 66.667 0.00 0.00 0.00 5.87
7571 9512 2.182030 CGGTTCCCTCTGTCTCGC 59.818 66.667 0.00 0.00 0.00 5.03
7572 9513 1.507174 GACGGTTCCCTCTGTCTCG 59.493 63.158 0.00 0.00 39.71 4.04
7573 9514 1.507174 CGACGGTTCCCTCTGTCTC 59.493 63.158 0.00 0.00 40.40 3.36
7574 9515 2.637383 GCGACGGTTCCCTCTGTCT 61.637 63.158 0.00 0.00 40.40 3.41
7575 9516 2.126031 GCGACGGTTCCCTCTGTC 60.126 66.667 0.00 0.00 39.51 3.51
7576 9517 2.600769 AGCGACGGTTCCCTCTGT 60.601 61.111 0.00 0.00 0.00 3.41
7577 9518 2.125912 CAGCGACGGTTCCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
7578 9519 4.070552 GCAGCGACGGTTCCCTCT 62.071 66.667 0.00 0.00 0.00 3.69
7618 9559 4.803426 GAGGCTGTGTCTCCCGCG 62.803 72.222 0.00 0.00 0.00 6.46
7619 9560 2.527951 ATTGAGGCTGTGTCTCCCGC 62.528 60.000 0.00 0.00 32.68 6.13
7620 9561 0.036010 AATTGAGGCTGTGTCTCCCG 60.036 55.000 0.00 0.00 32.68 5.14
7621 9562 2.206576 AAATTGAGGCTGTGTCTCCC 57.793 50.000 0.00 0.00 32.68 4.30
7622 9563 5.904362 ATAAAAATTGAGGCTGTGTCTCC 57.096 39.130 0.00 0.00 32.68 3.71
7623 9564 8.593492 AAAAATAAAAATTGAGGCTGTGTCTC 57.407 30.769 0.00 0.00 34.49 3.36
7641 9582 9.833917 AGGGGAAAACGTGAAAAATAAAAATAA 57.166 25.926 0.00 0.00 0.00 1.40
7642 9583 9.833917 AAGGGGAAAACGTGAAAAATAAAAATA 57.166 25.926 0.00 0.00 0.00 1.40
7643 9584 8.740123 AAGGGGAAAACGTGAAAAATAAAAAT 57.260 26.923 0.00 0.00 0.00 1.82
7644 9585 8.563123 AAAGGGGAAAACGTGAAAAATAAAAA 57.437 26.923 0.00 0.00 0.00 1.94
7645 9586 8.563123 AAAAGGGGAAAACGTGAAAAATAAAA 57.437 26.923 0.00 0.00 0.00 1.52
7646 9587 8.451748 CAAAAAGGGGAAAACGTGAAAAATAAA 58.548 29.630 0.00 0.00 0.00 1.40
7647 9588 7.065923 CCAAAAAGGGGAAAACGTGAAAAATAA 59.934 33.333 0.00 0.00 0.00 1.40
7648 9589 6.539103 CCAAAAAGGGGAAAACGTGAAAAATA 59.461 34.615 0.00 0.00 0.00 1.40
7649 9590 5.355630 CCAAAAAGGGGAAAACGTGAAAAAT 59.644 36.000 0.00 0.00 0.00 1.82
7650 9591 4.695928 CCAAAAAGGGGAAAACGTGAAAAA 59.304 37.500 0.00 0.00 0.00 1.94
7651 9592 4.254492 CCAAAAAGGGGAAAACGTGAAAA 58.746 39.130 0.00 0.00 0.00 2.29
7652 9593 3.261137 ACCAAAAAGGGGAAAACGTGAAA 59.739 39.130 0.00 0.00 43.89 2.69
7653 9594 2.832733 ACCAAAAAGGGGAAAACGTGAA 59.167 40.909 0.00 0.00 43.89 3.18
7654 9595 2.458620 ACCAAAAAGGGGAAAACGTGA 58.541 42.857 0.00 0.00 43.89 4.35
7655 9596 2.971660 ACCAAAAAGGGGAAAACGTG 57.028 45.000 0.00 0.00 43.89 4.49
7656 9597 3.101437 AGAACCAAAAAGGGGAAAACGT 58.899 40.909 0.00 0.00 43.89 3.99
7657 9598 3.812156 AGAACCAAAAAGGGGAAAACG 57.188 42.857 0.00 0.00 43.89 3.60
7658 9599 6.827586 AAAAAGAACCAAAAAGGGGAAAAC 57.172 33.333 0.00 0.00 43.89 2.43
7732 9673 9.643693 GGTCATCATTTTCAAATGTTTATCACT 57.356 29.630 11.21 0.00 44.66 3.41
7733 9674 9.421806 TGGTCATCATTTTCAAATGTTTATCAC 57.578 29.630 11.21 0.00 44.66 3.06
7734 9675 9.993454 TTGGTCATCATTTTCAAATGTTTATCA 57.007 25.926 11.21 0.73 44.66 2.15
7737 9678 8.772705 GCTTTGGTCATCATTTTCAAATGTTTA 58.227 29.630 11.21 0.00 44.66 2.01
7738 9679 7.282675 TGCTTTGGTCATCATTTTCAAATGTTT 59.717 29.630 11.21 0.01 44.66 2.83
7739 9680 6.766944 TGCTTTGGTCATCATTTTCAAATGTT 59.233 30.769 11.21 1.85 44.66 2.71
7740 9681 6.289834 TGCTTTGGTCATCATTTTCAAATGT 58.710 32.000 11.21 0.00 44.66 2.71
7741 9682 6.788684 TGCTTTGGTCATCATTTTCAAATG 57.211 33.333 5.99 5.99 45.49 2.32
7742 9683 7.989416 AATGCTTTGGTCATCATTTTCAAAT 57.011 28.000 0.00 0.00 0.00 2.32
7743 9684 7.498239 TCAAATGCTTTGGTCATCATTTTCAAA 59.502 29.630 8.23 0.00 40.98 2.69
7744 9685 6.990939 TCAAATGCTTTGGTCATCATTTTCAA 59.009 30.769 8.23 0.00 40.98 2.69
7745 9686 6.522946 TCAAATGCTTTGGTCATCATTTTCA 58.477 32.000 8.23 0.00 40.98 2.69
7746 9687 7.424227 TTCAAATGCTTTGGTCATCATTTTC 57.576 32.000 8.23 0.00 40.98 2.29
7747 9688 7.804843 TTTCAAATGCTTTGGTCATCATTTT 57.195 28.000 8.23 0.00 40.98 1.82
7748 9689 7.804843 TTTTCAAATGCTTTGGTCATCATTT 57.195 28.000 8.23 0.00 40.98 2.32
7749 9690 7.804843 TTTTTCAAATGCTTTGGTCATCATT 57.195 28.000 8.23 0.00 40.98 2.57
7750 9691 7.446013 ACATTTTTCAAATGCTTTGGTCATCAT 59.554 29.630 8.77 0.00 40.98 2.45
7751 9692 6.766944 ACATTTTTCAAATGCTTTGGTCATCA 59.233 30.769 8.77 0.00 40.98 3.07
7752 9693 7.193377 ACATTTTTCAAATGCTTTGGTCATC 57.807 32.000 8.77 0.00 40.98 2.92
7753 9694 7.571080 AACATTTTTCAAATGCTTTGGTCAT 57.429 28.000 8.77 0.00 40.98 3.06
7754 9695 6.998968 AACATTTTTCAAATGCTTTGGTCA 57.001 29.167 8.77 0.00 40.98 4.02
7755 9696 9.949174 ATTTAACATTTTTCAAATGCTTTGGTC 57.051 25.926 8.77 0.00 40.98 4.02
7756 9697 9.733219 CATTTAACATTTTTCAAATGCTTTGGT 57.267 25.926 8.77 0.00 40.98 3.67
7757 9698 9.733219 ACATTTAACATTTTTCAAATGCTTTGG 57.267 25.926 8.77 0.00 40.43 3.28
7781 9722 9.210329 ACGTGATAAACATTTTCTGTATACACA 57.790 29.630 0.08 0.00 36.98 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.