Multiple sequence alignment - TraesCS1A01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G181500 chr1A 100.000 3858 0 0 1 3858 327532149 327528292 0.000000e+00 7125.0
1 TraesCS1A01G181500 chr1A 100.000 28 0 0 568 595 95860759 95860786 7.000000e-03 52.8
2 TraesCS1A01G181500 chr1D 92.236 3954 131 53 8 3858 255494699 255490819 0.000000e+00 5439.0
3 TraesCS1A01G181500 chr1B 90.435 2802 123 52 390 3122 357425276 357428001 0.000000e+00 3555.0
4 TraesCS1A01G181500 chr1B 97.835 693 15 0 3166 3858 357429355 357430047 0.000000e+00 1197.0
5 TraesCS1A01G181500 chr1B 96.410 390 9 2 1 385 357424843 357425232 4.200000e-179 638.0
6 TraesCS1A01G181500 chr5D 78.680 394 80 4 3448 3839 414248466 414248075 3.820000e-65 259.0
7 TraesCS1A01G181500 chr5A 79.109 359 71 4 3448 3804 526660689 526660333 1.070000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G181500 chr1A 327528292 327532149 3857 True 7125.000000 7125 100.000000 1 3858 1 chr1A.!!$R1 3857
1 TraesCS1A01G181500 chr1D 255490819 255494699 3880 True 5439.000000 5439 92.236000 8 3858 1 chr1D.!!$R1 3850
2 TraesCS1A01G181500 chr1B 357424843 357430047 5204 False 1796.666667 3555 94.893333 1 3858 3 chr1B.!!$F1 3857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 273 0.171231 TTGATCTCACCGACGAGCTG 59.829 55.0 0.0 0.0 32.75 4.24 F
1004 1097 0.030369 CGTGGATCTAGGCGTACACC 59.970 60.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1950 0.321210 TACCCAGCATCAACCACGTG 60.321 55.000 9.08 9.08 0.00 4.49 R
2997 3127 1.402968 CGAATTGATCAACTGGCCCAG 59.597 52.381 11.07 9.83 37.52 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 63 5.397142 GGATTCCATTATCCAAATGGCTC 57.603 43.478 11.16 9.97 45.22 4.70
128 133 2.632512 TGCAGTACTGAATGGAGTGACA 59.367 45.455 27.08 7.67 0.00 3.58
129 134 3.261643 TGCAGTACTGAATGGAGTGACAT 59.738 43.478 27.08 0.00 0.00 3.06
130 135 3.868077 GCAGTACTGAATGGAGTGACATC 59.132 47.826 27.08 0.00 0.00 3.06
131 136 4.621510 GCAGTACTGAATGGAGTGACATCA 60.622 45.833 27.08 0.00 0.00 3.07
132 137 5.668471 CAGTACTGAATGGAGTGACATCAT 58.332 41.667 18.45 0.00 0.00 2.45
133 138 5.522824 CAGTACTGAATGGAGTGACATCATG 59.477 44.000 18.45 0.00 0.00 3.07
263 273 0.171231 TTGATCTCACCGACGAGCTG 59.829 55.000 0.00 0.00 32.75 4.24
330 340 3.965539 CTCCTCCTGCTTGGCCGTG 62.966 68.421 0.00 0.00 35.26 4.94
364 374 1.866997 TCCTCCTCTTCCTCCCCCA 60.867 63.158 0.00 0.00 0.00 4.96
498 549 3.616721 AGCGTTGGCGGTCTCACT 61.617 61.111 0.00 0.00 46.65 3.41
499 550 3.414700 GCGTTGGCGGTCTCACTG 61.415 66.667 0.00 0.00 38.78 3.66
521 572 0.724549 CACTCTCCTCTCGTGTCTCG 59.275 60.000 0.00 0.00 41.41 4.04
522 573 1.022451 ACTCTCCTCTCGTGTCTCGC 61.022 60.000 0.00 0.00 39.67 5.03
626 678 3.345808 GCAAGCTGACGTGCCGAA 61.346 61.111 0.00 0.00 44.41 4.30
627 679 2.892334 GCAAGCTGACGTGCCGAAA 61.892 57.895 0.00 0.00 44.41 3.46
628 680 1.868997 CAAGCTGACGTGCCGAAAT 59.131 52.632 0.00 0.00 0.00 2.17
631 683 2.680913 GCTGACGTGCCGAAATGCT 61.681 57.895 0.00 0.00 0.00 3.79
633 685 2.202349 GACGTGCCGAAATGCTGC 60.202 61.111 0.00 0.00 0.00 5.25
634 686 2.669569 ACGTGCCGAAATGCTGCT 60.670 55.556 0.00 0.00 0.00 4.24
636 688 2.679934 CGTGCCGAAATGCTGCTGA 61.680 57.895 0.00 0.00 0.00 4.26
637 689 1.154150 GTGCCGAAATGCTGCTGAC 60.154 57.895 0.00 0.00 0.00 3.51
638 690 2.099062 GCCGAAATGCTGCTGACG 59.901 61.111 0.00 1.92 0.00 4.35
639 691 2.787249 CCGAAATGCTGCTGACGG 59.213 61.111 0.00 7.40 34.77 4.79
640 692 2.753966 CCGAAATGCTGCTGACGGG 61.754 63.158 15.66 3.59 37.28 5.28
641 693 2.486966 GAAATGCTGCTGACGGGC 59.513 61.111 0.00 0.00 0.00 6.13
642 694 3.056313 GAAATGCTGCTGACGGGCC 62.056 63.158 0.00 0.00 0.00 5.80
659 711 4.796231 CGACGGCCGAGGGTTGAG 62.796 72.222 35.90 9.24 41.76 3.02
712 784 0.532115 CGAGGGGCATTTTGGGAAAG 59.468 55.000 0.00 0.00 0.00 2.62
714 786 2.256306 GAGGGGCATTTTGGGAAAGAA 58.744 47.619 0.00 0.00 0.00 2.52
723 795 3.125573 GGGAAAGAAGGCCGCGAC 61.126 66.667 8.23 0.00 0.00 5.19
997 1090 0.248539 GACGTGTCGTGGATCTAGGC 60.249 60.000 0.00 0.00 41.37 3.93
999 1092 1.807886 GTGTCGTGGATCTAGGCGT 59.192 57.895 0.00 0.00 0.00 5.68
1003 1096 1.019673 TCGTGGATCTAGGCGTACAC 58.980 55.000 0.00 0.00 0.00 2.90
1004 1097 0.030369 CGTGGATCTAGGCGTACACC 59.970 60.000 0.00 0.00 0.00 4.16
1005 1098 0.030369 GTGGATCTAGGCGTACACCG 59.970 60.000 0.00 0.00 40.40 4.94
1006 1099 0.107066 TGGATCTAGGCGTACACCGA 60.107 55.000 0.00 0.00 39.56 4.69
1007 1100 1.027357 GGATCTAGGCGTACACCGAA 58.973 55.000 0.00 0.00 39.56 4.30
1046 1139 4.646572 TGGGATTGTTTTTATTTGGTGGC 58.353 39.130 0.00 0.00 0.00 5.01
1056 1149 0.525761 ATTTGGTGGCGTGGAATTCG 59.474 50.000 0.00 0.00 0.00 3.34
1067 1160 0.909610 TGGAATTCGTGGCCTCTCCT 60.910 55.000 3.32 0.00 35.26 3.69
1242 1335 5.533903 CGTTTTCCTACCCTAGCATCTACTA 59.466 44.000 0.00 0.00 0.00 1.82
1243 1336 6.040166 CGTTTTCCTACCCTAGCATCTACTAA 59.960 42.308 0.00 0.00 0.00 2.24
1267 1360 0.458716 GCGAGTTCTGTGGCTAGTCC 60.459 60.000 0.00 0.00 0.00 3.85
1280 1373 0.179134 CTAGTCCTCTTGTTCCGGCG 60.179 60.000 0.00 0.00 0.00 6.46
1303 1396 2.203337 TTCGCCTGCAAAGCCTGT 60.203 55.556 2.96 0.00 0.00 4.00
1340 1433 5.068987 CACTTCTAGATGCTAGGCTTCTTCT 59.931 44.000 11.95 1.29 41.92 2.85
1348 1441 2.166664 GCTAGGCTTCTTCTCGAGGAAA 59.833 50.000 13.56 0.00 33.07 3.13
1351 1444 3.403968 AGGCTTCTTCTCGAGGAAAAAC 58.596 45.455 13.56 0.00 33.07 2.43
1359 1452 4.244425 TCTCGAGGAAAAACTGAGTCTG 57.756 45.455 13.56 0.00 0.00 3.51
1360 1453 2.734079 CTCGAGGAAAAACTGAGTCTGC 59.266 50.000 3.91 0.00 0.00 4.26
1361 1454 2.365617 TCGAGGAAAAACTGAGTCTGCT 59.634 45.455 0.00 0.00 0.00 4.24
1362 1455 2.478134 CGAGGAAAAACTGAGTCTGCTG 59.522 50.000 0.00 0.00 0.00 4.41
1363 1456 2.810852 GAGGAAAAACTGAGTCTGCTGG 59.189 50.000 0.00 0.00 0.00 4.85
1364 1457 1.882623 GGAAAAACTGAGTCTGCTGGG 59.117 52.381 0.00 0.00 0.00 4.45
1365 1458 1.882623 GAAAAACTGAGTCTGCTGGGG 59.117 52.381 0.00 0.00 0.00 4.96
1366 1459 0.538287 AAAACTGAGTCTGCTGGGGC 60.538 55.000 0.00 0.00 39.26 5.80
1384 1477 2.040544 CGCTGGGCTCGTGGAATTT 61.041 57.895 0.00 0.00 0.00 1.82
1507 1615 7.889589 AATAGCAAGTGATTTGTTTTAAGCC 57.110 32.000 0.00 0.00 39.08 4.35
1510 1618 4.084380 GCAAGTGATTTGTTTTAAGCCTGC 60.084 41.667 0.00 0.00 39.08 4.85
1597 1708 8.715998 CACCTTCTGCAATATTGTACATAGATC 58.284 37.037 16.61 0.00 0.00 2.75
1838 1950 1.027357 AGGGCGATTGATTCACATGC 58.973 50.000 0.00 0.00 0.00 4.06
1928 2045 4.474394 TGGTACCCATTTCAATTGTGTGA 58.526 39.130 10.07 0.00 0.00 3.58
2068 2192 5.301555 TGACGAAATTCCTGTTATGTGTGA 58.698 37.500 0.00 0.00 0.00 3.58
2127 2251 7.446931 TGTGTAACATTTCAGGTGTATGATGTT 59.553 33.333 0.00 0.00 45.67 2.71
2196 2320 3.122948 CAGTAACCGGTGAGTCATTTTCG 59.877 47.826 8.52 0.00 0.00 3.46
2201 2325 3.061322 CCGGTGAGTCATTTTCGTTGTA 58.939 45.455 0.00 0.00 0.00 2.41
2243 2368 2.763249 AGTTCAAAAGTCTTGCGCAG 57.237 45.000 11.31 5.25 0.00 5.18
2372 2499 1.829222 GAGAAGTACCACATCGGGGAA 59.171 52.381 0.00 0.00 40.22 3.97
2657 2784 9.378551 TGAGTTAGAACAACATAATGATGGTAC 57.621 33.333 0.00 0.00 37.39 3.34
2706 2833 4.824479 TGATCATACAAGGCACTCTCAA 57.176 40.909 0.00 0.00 38.49 3.02
2709 2836 6.182627 TGATCATACAAGGCACTCTCAATTT 58.817 36.000 0.00 0.00 38.49 1.82
2710 2837 5.885230 TCATACAAGGCACTCTCAATTTG 57.115 39.130 0.00 0.00 38.49 2.32
2770 2897 7.389803 TGTTTACATTCTCAACATATGGTGG 57.610 36.000 20.49 11.32 32.52 4.61
2819 2946 4.080919 TGGAGTGTCTACAATTGAGGATGG 60.081 45.833 13.59 0.00 0.00 3.51
2912 3042 4.764823 TGTTCCCACATAATTTGTCTGTCC 59.235 41.667 0.00 0.00 36.00 4.02
2997 3127 0.316204 AAAGCATGCAAGTGACAGCC 59.684 50.000 21.98 0.00 0.00 4.85
3034 3164 7.744087 TCAATTCGATTATCGGAAATTCCAT 57.256 32.000 14.86 7.40 40.88 3.41
3139 3272 1.715019 TTCCCTCCACACCACCCTTG 61.715 60.000 0.00 0.00 0.00 3.61
3285 4728 2.061220 CAGAGAGAGGGCACACCAA 58.939 57.895 0.00 0.00 43.89 3.67
3482 4925 2.353610 CCAAATGTCCAGCTGCCCC 61.354 63.158 8.66 0.00 0.00 5.80
3622 5065 0.241213 GCTCCAAGCCGAAGTTTTCC 59.759 55.000 0.00 0.00 34.48 3.13
3629 5072 1.241990 GCCGAAGTTTTCCCCAGGAC 61.242 60.000 0.00 0.00 0.00 3.85
3634 5077 0.249398 AGTTTTCCCCAGGACGATCG 59.751 55.000 14.88 14.88 0.00 3.69
3637 5080 2.515996 TTTCCCCAGGACGATCGTGC 62.516 60.000 29.68 29.68 36.69 5.34
3647 5090 2.106938 GATCGTGCGATCCCAGCA 59.893 61.111 20.18 0.00 43.71 4.41
3675 5118 3.716195 CCTGGTCGGCCCACATCA 61.716 66.667 2.12 0.00 38.72 3.07
3761 5204 0.037790 AGACGAAGAAGCAGTCTGCC 60.038 55.000 21.32 7.09 46.52 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 63 0.737219 CTTGGGTCGTCCTAGTACCG 59.263 60.000 0.00 0.00 34.35 4.02
128 133 2.108514 CGCGTCCTTGTGCCATGAT 61.109 57.895 0.00 0.00 0.00 2.45
129 134 2.741985 CGCGTCCTTGTGCCATGA 60.742 61.111 0.00 0.00 0.00 3.07
130 135 4.465512 GCGCGTCCTTGTGCCATG 62.466 66.667 8.43 0.00 39.42 3.66
339 349 3.077556 GAAGAGGAGGAGCCGCCA 61.078 66.667 11.95 0.00 43.43 5.69
364 374 2.037527 GGAGGTGGAGGACGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
489 540 2.807045 GAGTGCGCAGTGAGACCG 60.807 66.667 25.09 0.00 0.00 4.79
490 541 1.445238 GAGAGTGCGCAGTGAGACC 60.445 63.158 25.09 7.69 0.00 3.85
491 542 1.445238 GGAGAGTGCGCAGTGAGAC 60.445 63.158 25.09 8.12 0.00 3.36
492 543 1.590610 GAGGAGAGTGCGCAGTGAGA 61.591 60.000 25.09 0.00 0.00 3.27
493 544 1.153862 GAGGAGAGTGCGCAGTGAG 60.154 63.158 25.09 0.00 0.00 3.51
494 545 1.590610 GAGAGGAGAGTGCGCAGTGA 61.591 60.000 25.09 0.00 0.00 3.41
495 546 1.153862 GAGAGGAGAGTGCGCAGTG 60.154 63.158 25.09 0.00 0.00 3.66
496 547 2.695759 CGAGAGGAGAGTGCGCAGT 61.696 63.158 19.70 19.70 0.00 4.40
497 548 2.101965 CGAGAGGAGAGTGCGCAG 59.898 66.667 12.22 0.00 0.00 5.18
498 549 2.673341 ACGAGAGGAGAGTGCGCA 60.673 61.111 5.66 5.66 0.00 6.09
499 550 2.202544 CACGAGAGGAGAGTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
500 551 1.135731 GACACGAGAGGAGAGTGCG 59.864 63.158 0.00 0.00 39.31 5.34
501 552 0.450184 GAGACACGAGAGGAGAGTGC 59.550 60.000 0.00 0.00 39.31 4.40
502 553 0.724549 CGAGACACGAGAGGAGAGTG 59.275 60.000 0.00 0.00 45.77 3.51
503 554 1.022451 GCGAGACACGAGAGGAGAGT 61.022 60.000 0.00 0.00 45.77 3.24
504 555 1.711060 GGCGAGACACGAGAGGAGAG 61.711 65.000 0.00 0.00 45.77 3.20
505 556 1.745864 GGCGAGACACGAGAGGAGA 60.746 63.158 0.00 0.00 45.77 3.71
548 599 1.302671 TACCCTTTCCGTTTGCCCG 60.303 57.895 0.00 0.00 0.00 6.13
624 676 2.486966 GCCCGTCAGCAGCATTTC 59.513 61.111 0.00 0.00 0.00 2.17
642 694 4.796231 CTCAACCCTCGGCCGTCG 62.796 72.222 27.15 17.27 40.90 5.12
643 695 4.452733 CCTCAACCCTCGGCCGTC 62.453 72.222 27.15 0.00 0.00 4.79
659 711 2.361230 CGTTTCCTCCCTTGGGCC 60.361 66.667 0.00 0.00 0.00 5.80
702 774 1.801309 CGCGGCCTTCTTTCCCAAAA 61.801 55.000 0.00 0.00 0.00 2.44
811 884 2.568935 GATCACGCGCTTTGGACAGC 62.569 60.000 5.73 0.00 36.33 4.40
958 1051 0.601841 GTCGGGAGAAAAGCGGTTGA 60.602 55.000 0.00 0.00 42.89 3.18
997 1090 1.162698 TCAGTCCTCTTCGGTGTACG 58.837 55.000 0.00 0.00 46.11 3.67
999 1092 4.884668 AAAATCAGTCCTCTTCGGTGTA 57.115 40.909 0.00 0.00 0.00 2.90
1023 1116 5.066593 GCCACCAAATAAAAACAATCCCAA 58.933 37.500 0.00 0.00 0.00 4.12
1024 1117 4.646572 GCCACCAAATAAAAACAATCCCA 58.353 39.130 0.00 0.00 0.00 4.37
1025 1118 3.682377 CGCCACCAAATAAAAACAATCCC 59.318 43.478 0.00 0.00 0.00 3.85
1026 1119 4.151512 CACGCCACCAAATAAAAACAATCC 59.848 41.667 0.00 0.00 0.00 3.01
1027 1120 4.151512 CCACGCCACCAAATAAAAACAATC 59.848 41.667 0.00 0.00 0.00 2.67
1028 1121 4.061596 CCACGCCACCAAATAAAAACAAT 58.938 39.130 0.00 0.00 0.00 2.71
1029 1122 3.132289 TCCACGCCACCAAATAAAAACAA 59.868 39.130 0.00 0.00 0.00 2.83
1030 1123 2.693591 TCCACGCCACCAAATAAAAACA 59.306 40.909 0.00 0.00 0.00 2.83
1046 1139 1.079127 AGAGGCCACGAATTCCACG 60.079 57.895 5.01 0.00 0.00 4.94
1056 1149 2.063378 CCTGAGGAGGAGAGGCCAC 61.063 68.421 5.01 0.00 42.93 5.01
1242 1335 0.674895 GCCACAGAACTCGCAGGATT 60.675 55.000 0.00 0.00 0.00 3.01
1243 1336 1.078848 GCCACAGAACTCGCAGGAT 60.079 57.895 0.00 0.00 0.00 3.24
1267 1360 3.121030 CCTGCGCCGGAACAAGAG 61.121 66.667 13.28 0.00 0.00 2.85
1303 1396 5.830000 TCTAGAAGTGTTATCTAGCGCAA 57.170 39.130 11.47 0.00 43.92 4.85
1306 1399 6.007936 AGCATCTAGAAGTGTTATCTAGCG 57.992 41.667 0.00 2.03 43.92 4.26
1316 1409 4.935352 AGAAGCCTAGCATCTAGAAGTG 57.065 45.455 0.00 0.00 34.77 3.16
1340 1433 2.365617 AGCAGACTCAGTTTTTCCTCGA 59.634 45.455 0.00 0.00 0.00 4.04
1348 1441 1.073897 GCCCCAGCAGACTCAGTTT 59.926 57.895 0.00 0.00 39.53 2.66
1366 1459 2.040544 AAATTCCACGAGCCCAGCG 61.041 57.895 0.00 0.00 0.00 5.18
1384 1477 4.645535 AGCAAGCTCAACAAGAATACTCA 58.354 39.130 0.00 0.00 0.00 3.41
1507 1615 0.804989 GGTCTGGAATTGGAACGCAG 59.195 55.000 0.00 0.00 0.00 5.18
1510 1618 2.185004 ACTGGTCTGGAATTGGAACG 57.815 50.000 0.00 0.00 0.00 3.95
1597 1708 1.267932 GGATCTTGTACGAGTCGACCG 60.268 57.143 21.50 20.16 0.00 4.79
1632 1743 6.933521 CCTCGTCAAGAATGAAATCCTGATAT 59.066 38.462 0.00 0.00 37.30 1.63
1838 1950 0.321210 TACCCAGCATCAACCACGTG 60.321 55.000 9.08 9.08 0.00 4.49
1928 2045 2.586425 CCACACTGGAACATTCAAGGT 58.414 47.619 1.16 0.00 40.96 3.50
1996 2119 8.949177 GGGTATTTCTTTTACTCCAACGAAATA 58.051 33.333 0.00 0.00 32.72 1.40
2000 2123 5.867330 TGGGTATTTCTTTTACTCCAACGA 58.133 37.500 0.00 0.00 0.00 3.85
2127 2251 2.204463 TGCTCATCCATGAAAGGGGTA 58.796 47.619 0.00 0.00 39.14 3.69
2657 2784 2.111043 ACACTGCCACCCAACGAG 59.889 61.111 0.00 0.00 0.00 4.18
2706 2833 6.554228 TGGGCATACATATGGATGTTTCAAAT 59.446 34.615 25.52 0.00 44.18 2.32
2709 2836 5.059134 TGGGCATACATATGGATGTTTCA 57.941 39.130 25.52 18.39 44.18 2.69
2710 2837 5.316167 TCTGGGCATACATATGGATGTTTC 58.684 41.667 25.52 16.46 44.18 2.78
2819 2946 8.792633 TGTTTAATAGCATAGCAATATTCCCAC 58.207 33.333 0.00 0.00 0.00 4.61
2997 3127 1.402968 CGAATTGATCAACTGGCCCAG 59.597 52.381 11.07 9.83 37.52 4.45
3034 3164 7.619302 AGGGATTCTGCCTTCATAAAATAAACA 59.381 33.333 0.00 0.00 32.70 2.83
3156 3289 6.872020 GGTCTTGCAGTGTATTTGTAACTAGA 59.128 38.462 0.00 0.00 0.00 2.43
3482 4925 1.369091 GGGACTGTAACAGCATGGCG 61.369 60.000 0.00 0.00 43.62 5.69
3572 5015 0.812811 ATGACCTGCTGCTGTATGCG 60.813 55.000 0.00 0.00 46.63 4.73
3612 5055 0.034337 TCGTCCTGGGGAAAACTTCG 59.966 55.000 0.00 0.00 31.38 3.79
3622 5065 3.138930 ATCGCACGATCGTCCTGGG 62.139 63.158 19.84 15.75 0.00 4.45
3662 5105 2.125106 GAGGTGATGTGGGCCGAC 60.125 66.667 11.57 11.57 0.00 4.79
3675 5118 2.608988 CCTCAGCCTGTGGGAGGT 60.609 66.667 4.86 0.00 44.97 3.85
3761 5204 1.129998 CACTTGGAGATGCTTGAAGCG 59.870 52.381 13.05 0.00 46.26 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.