Multiple sequence alignment - TraesCS1A01G180900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G180900 chr1A 100.000 2416 0 0 1 2416 327011874 327014289 0.000000e+00 4462.0
1 TraesCS1A01G180900 chr1A 96.528 1037 28 3 159 1192 451737048 451738079 0.000000e+00 1709.0
2 TraesCS1A01G180900 chr1A 97.419 310 7 1 1187 1495 451737997 451738306 5.920000e-146 527.0
3 TraesCS1A01G180900 chr1A 82.911 316 48 6 1187 1499 559406006 559405694 1.830000e-71 279.0
4 TraesCS1A01G180900 chr1A 93.750 112 6 1 159 270 327013369 327013259 1.490000e-37 167.0
5 TraesCS1A01G180900 chr1A 92.793 111 8 0 160 270 451738306 451738196 6.910000e-36 161.0
6 TraesCS1A01G180900 chr1A 98.795 83 1 0 1187 1269 327012983 327013065 5.380000e-32 148.0
7 TraesCS1A01G180900 chr1A 98.795 83 1 0 1110 1192 327013060 327013142 5.380000e-32 148.0
8 TraesCS1A01G180900 chr5A 95.950 1037 39 2 159 1192 85661403 85660367 0.000000e+00 1679.0
9 TraesCS1A01G180900 chr5A 86.754 536 62 9 1498 2031 392040488 392039960 2.680000e-164 588.0
10 TraesCS1A01G180900 chr5A 98.071 311 4 2 1187 1496 85660449 85660140 7.600000e-150 540.0
11 TraesCS1A01G180900 chr5A 85.556 180 20 5 1322 1498 589377923 589377747 1.480000e-42 183.0
12 TraesCS1A01G180900 chr5A 84.530 181 21 6 1320 1496 85661226 85661403 3.190000e-39 172.0
13 TraesCS1A01G180900 chr5A 82.609 184 25 6 1318 1496 311942637 311942818 3.220000e-34 156.0
14 TraesCS1A01G180900 chr3A 95.946 1036 39 2 160 1192 169838625 169839660 0.000000e+00 1677.0
15 TraesCS1A01G180900 chr3A 97.428 311 7 1 1187 1496 169839578 169839888 1.640000e-146 529.0
16 TraesCS1A01G180900 chr3A 94.231 156 9 0 4 159 418765619 418765774 3.100000e-59 239.0
17 TraesCS1A01G180900 chr3A 93.750 112 7 0 159 270 169839888 169839777 4.130000e-38 169.0
18 TraesCS1A01G180900 chr2A 96.256 1015 35 2 181 1192 541848317 541847303 0.000000e+00 1661.0
19 TraesCS1A01G180900 chr2A 98.684 304 3 1 1192 1494 541847380 541847077 2.730000e-149 538.0
20 TraesCS1A01G180900 chr2A 84.615 65 6 3 2250 2313 470245339 470245278 7.210000e-06 62.1
21 TraesCS1A01G180900 chr4D 90.075 534 51 2 1498 2031 421048752 421049283 0.000000e+00 691.0
22 TraesCS1A01G180900 chr4D 88.704 540 58 3 1498 2035 442390479 442389941 0.000000e+00 656.0
23 TraesCS1A01G180900 chr4D 87.109 543 59 7 1497 2032 56941500 56940962 2.660000e-169 604.0
24 TraesCS1A01G180900 chr4D 94.340 159 9 0 1 159 421048592 421048750 6.670000e-61 244.0
25 TraesCS1A01G180900 chr4D 93.082 159 11 0 1 159 493971065 493971223 1.440000e-57 233.0
26 TraesCS1A01G180900 chr4D 89.308 159 16 1 1 158 508924752 508924594 5.270000e-47 198.0
27 TraesCS1A01G180900 chr2D 91.667 492 40 1 1494 1985 601504818 601505308 0.000000e+00 680.0
28 TraesCS1A01G180900 chr2D 88.182 550 50 10 1497 2031 618295601 618295052 2.030000e-180 641.0
29 TraesCS1A01G180900 chr2D 92.453 159 12 0 1 159 601504672 601504830 6.720000e-56 228.0
30 TraesCS1A01G180900 chr6D 87.833 526 61 3 1508 2031 450905852 450905328 4.410000e-172 614.0
31 TraesCS1A01G180900 chr6D 80.702 114 19 3 158 270 100546275 100546164 4.280000e-13 86.1
32 TraesCS1A01G180900 chr3D 87.810 525 61 3 1508 2031 516070860 516071382 1.590000e-171 612.0
33 TraesCS1A01G180900 chr3D 90.625 160 14 1 1 159 45633820 45633979 6.770000e-51 211.0
34 TraesCS1A01G180900 chr6B 86.481 540 72 1 1498 2037 189103422 189102884 2.070000e-165 592.0
35 TraesCS1A01G180900 chr6B 80.410 439 78 2 752 1182 231369997 231370435 6.440000e-86 327.0
36 TraesCS1A01G180900 chr6B 82.906 117 19 1 1203 1319 231370379 231370494 1.180000e-18 104.0
37 TraesCS1A01G180900 chr7D 84.295 312 38 8 1188 1496 612342667 612342970 6.530000e-76 294.0
38 TraesCS1A01G180900 chr7D 83.815 173 25 3 548 719 385818024 385817854 6.910000e-36 161.0
39 TraesCS1A01G180900 chr5D 93.711 159 9 1 1 159 460216272 460216115 1.120000e-58 237.0
40 TraesCS1A01G180900 chr4A 93.671 158 10 0 1 158 327748330 327748487 1.120000e-58 237.0
41 TraesCS1A01G180900 chr2B 94.702 151 8 0 9 159 110000249 110000099 4.020000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G180900 chr1A 327011874 327014289 2415 False 1586.0 4462 99.196667 1 2416 3 chr1A.!!$F1 2415
1 TraesCS1A01G180900 chr1A 451737048 451738306 1258 False 1118.0 1709 96.973500 159 1495 2 chr1A.!!$F2 1336
2 TraesCS1A01G180900 chr5A 85660140 85661403 1263 True 1109.5 1679 97.010500 159 1496 2 chr5A.!!$R3 1337
3 TraesCS1A01G180900 chr5A 392039960 392040488 528 True 588.0 588 86.754000 1498 2031 1 chr5A.!!$R1 533
4 TraesCS1A01G180900 chr3A 169838625 169839888 1263 False 1103.0 1677 96.687000 160 1496 2 chr3A.!!$F2 1336
5 TraesCS1A01G180900 chr2A 541847077 541848317 1240 True 1099.5 1661 97.470000 181 1494 2 chr2A.!!$R2 1313
6 TraesCS1A01G180900 chr4D 442389941 442390479 538 True 656.0 656 88.704000 1498 2035 1 chr4D.!!$R2 537
7 TraesCS1A01G180900 chr4D 56940962 56941500 538 True 604.0 604 87.109000 1497 2032 1 chr4D.!!$R1 535
8 TraesCS1A01G180900 chr4D 421048592 421049283 691 False 467.5 691 92.207500 1 2031 2 chr4D.!!$F2 2030
9 TraesCS1A01G180900 chr2D 618295052 618295601 549 True 641.0 641 88.182000 1497 2031 1 chr2D.!!$R1 534
10 TraesCS1A01G180900 chr2D 601504672 601505308 636 False 454.0 680 92.060000 1 1985 2 chr2D.!!$F1 1984
11 TraesCS1A01G180900 chr6D 450905328 450905852 524 True 614.0 614 87.833000 1508 2031 1 chr6D.!!$R2 523
12 TraesCS1A01G180900 chr3D 516070860 516071382 522 False 612.0 612 87.810000 1508 2031 1 chr3D.!!$F2 523
13 TraesCS1A01G180900 chr6B 189102884 189103422 538 True 592.0 592 86.481000 1498 2037 1 chr6B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 377 0.030603 GGATCCCCACTCTCCTCCTT 60.031 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 2162 0.033208 ACACATGGCCAATAGTGGGG 60.033 55.0 28.75 15.31 46.09 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 0.105224 CGTGTCTGTTGTGTACCCCA 59.895 55.000 0.00 0.00 0.00 4.96
117 118 0.428102 TCCCCCAATCCCCCTTCTAA 59.572 55.000 0.00 0.00 0.00 2.10
119 120 1.866269 CCCCCAATCCCCCTTCTAATT 59.134 52.381 0.00 0.00 0.00 1.40
122 123 3.052186 CCCCAATCCCCCTTCTAATTCAA 60.052 47.826 0.00 0.00 0.00 2.69
135 136 5.353394 TCTAATTCAACCGCATCTACCTT 57.647 39.130 0.00 0.00 0.00 3.50
141 142 5.353394 TCAACCGCATCTACCTTTATTCT 57.647 39.130 0.00 0.00 0.00 2.40
274 275 7.367285 CCAAACCGTTCAAAAATCATCTCTAA 58.633 34.615 0.00 0.00 0.00 2.10
276 277 6.743575 ACCGTTCAAAAATCATCTCTAAGG 57.256 37.500 0.00 0.00 0.00 2.69
355 359 2.186826 GGGCCCATTCGTCAATCGG 61.187 63.158 19.95 0.00 40.32 4.18
373 377 0.030603 GGATCCCCACTCTCCTCCTT 60.031 60.000 0.00 0.00 0.00 3.36
663 667 1.882989 GCTCCTCTGAAGCTGACCGT 61.883 60.000 0.00 0.00 0.00 4.83
1153 1157 1.474143 GGTGTGGCTCTATGCTTCCTC 60.474 57.143 0.00 0.00 42.39 3.71
1154 1158 0.833287 TGTGGCTCTATGCTTCCTCC 59.167 55.000 0.00 0.00 42.39 4.30
1155 1159 0.249657 GTGGCTCTATGCTTCCTCCG 60.250 60.000 0.00 0.00 42.39 4.63
1156 1160 1.369321 GGCTCTATGCTTCCTCCGG 59.631 63.158 0.00 0.00 42.39 5.14
1157 1161 1.301322 GCTCTATGCTTCCTCCGGC 60.301 63.158 0.00 0.00 38.95 6.13
1158 1162 1.369321 CTCTATGCTTCCTCCGGCC 59.631 63.158 0.00 0.00 0.00 6.13
1159 1163 1.382557 TCTATGCTTCCTCCGGCCA 60.383 57.895 2.24 0.00 0.00 5.36
1160 1164 1.227674 CTATGCTTCCTCCGGCCAC 60.228 63.158 2.24 0.00 0.00 5.01
1161 1165 2.978452 CTATGCTTCCTCCGGCCACG 62.978 65.000 2.24 0.00 40.55 4.94
1194 1198 4.415332 GCCGTCGACCGAAGCAGA 62.415 66.667 10.58 0.00 39.56 4.26
1195 1199 2.490217 CCGTCGACCGAAGCAGAT 59.510 61.111 10.58 0.00 39.56 2.90
1196 1200 1.874019 CCGTCGACCGAAGCAGATG 60.874 63.158 10.58 0.00 39.56 2.90
1197 1201 1.136774 CGTCGACCGAAGCAGATGA 59.863 57.895 10.58 0.00 39.56 2.92
1198 1202 0.248661 CGTCGACCGAAGCAGATGAT 60.249 55.000 10.58 0.00 39.56 2.45
1199 1203 1.482278 GTCGACCGAAGCAGATGATC 58.518 55.000 3.51 0.00 0.00 2.92
1200 1204 0.385751 TCGACCGAAGCAGATGATCC 59.614 55.000 0.00 0.00 0.00 3.36
1201 1205 0.598680 CGACCGAAGCAGATGATCCC 60.599 60.000 0.00 0.00 0.00 3.85
1202 1206 0.598680 GACCGAAGCAGATGATCCCG 60.599 60.000 0.00 0.00 0.00 5.14
1203 1207 1.043116 ACCGAAGCAGATGATCCCGA 61.043 55.000 0.00 0.00 0.00 5.14
1204 1208 0.598680 CCGAAGCAGATGATCCCGAC 60.599 60.000 0.00 0.00 0.00 4.79
1205 1209 0.103026 CGAAGCAGATGATCCCGACA 59.897 55.000 0.00 0.00 0.00 4.35
1206 1210 1.269988 CGAAGCAGATGATCCCGACAT 60.270 52.381 0.00 0.00 0.00 3.06
1207 1211 2.804572 CGAAGCAGATGATCCCGACATT 60.805 50.000 0.00 0.00 0.00 2.71
1208 1212 3.209410 GAAGCAGATGATCCCGACATTT 58.791 45.455 0.00 0.00 0.00 2.32
1209 1213 3.287867 AGCAGATGATCCCGACATTTT 57.712 42.857 0.00 0.00 0.00 1.82
1210 1214 2.947652 AGCAGATGATCCCGACATTTTG 59.052 45.455 0.00 0.00 0.00 2.44
1211 1215 2.033801 GCAGATGATCCCGACATTTTGG 59.966 50.000 0.00 0.00 0.00 3.28
1212 1216 3.282021 CAGATGATCCCGACATTTTGGT 58.718 45.455 0.00 0.00 0.00 3.67
1213 1217 3.065786 CAGATGATCCCGACATTTTGGTG 59.934 47.826 0.00 0.00 0.00 4.17
1214 1218 2.577606 TGATCCCGACATTTTGGTGT 57.422 45.000 0.00 0.00 34.39 4.16
1215 1219 2.158559 TGATCCCGACATTTTGGTGTG 58.841 47.619 0.00 0.00 31.16 3.82
1216 1220 1.472480 GATCCCGACATTTTGGTGTGG 59.528 52.381 0.00 0.00 31.16 4.17
1217 1221 1.175983 TCCCGACATTTTGGTGTGGC 61.176 55.000 0.00 0.00 31.16 5.01
1218 1222 1.178534 CCCGACATTTTGGTGTGGCT 61.179 55.000 0.00 0.00 31.16 4.75
1219 1223 0.240945 CCGACATTTTGGTGTGGCTC 59.759 55.000 0.00 0.00 31.16 4.70
1220 1224 1.238439 CGACATTTTGGTGTGGCTCT 58.762 50.000 0.00 0.00 31.16 4.09
1221 1225 2.422597 CGACATTTTGGTGTGGCTCTA 58.577 47.619 0.00 0.00 31.16 2.43
1222 1226 3.009723 CGACATTTTGGTGTGGCTCTAT 58.990 45.455 0.00 0.00 31.16 1.98
1223 1227 3.181507 CGACATTTTGGTGTGGCTCTATG 60.182 47.826 0.00 0.00 31.16 2.23
1224 1228 2.493278 ACATTTTGGTGTGGCTCTATGC 59.507 45.455 0.00 0.00 41.94 3.14
1225 1229 2.584835 TTTTGGTGTGGCTCTATGCT 57.415 45.000 0.00 0.00 42.39 3.79
1226 1230 2.584835 TTTGGTGTGGCTCTATGCTT 57.415 45.000 0.00 0.00 42.39 3.91
1227 1231 2.113860 TTGGTGTGGCTCTATGCTTC 57.886 50.000 0.00 0.00 42.39 3.86
1228 1232 0.253044 TGGTGTGGCTCTATGCTTCC 59.747 55.000 0.00 0.00 42.39 3.46
1229 1233 0.543749 GGTGTGGCTCTATGCTTCCT 59.456 55.000 0.00 0.00 42.39 3.36
1355 1359 1.403647 CGCTTTGACCTCGTCCATGTA 60.404 52.381 0.00 0.00 0.00 2.29
1394 1400 4.376146 CAAACCCACCAATGACGATTTTT 58.624 39.130 0.00 0.00 0.00 1.94
1517 1524 6.132791 TCCATGAACTAGTATGAACTCGTC 57.867 41.667 7.14 0.00 37.15 4.20
1708 1724 0.605589 CGGTGGTCTTCTTGCTCTCT 59.394 55.000 0.00 0.00 0.00 3.10
1822 1847 1.081175 CGCAGCTTCTCGAGTGTGA 60.081 57.895 13.13 0.00 0.00 3.58
1898 1923 1.779569 AACTGTCGATTCGAGCGTTT 58.220 45.000 9.42 0.00 36.23 3.60
1940 1965 5.067674 GGAGTGCTTTAAACATCATGCCATA 59.932 40.000 0.00 0.00 0.00 2.74
1943 1968 6.071447 AGTGCTTTAAACATCATGCCATACAA 60.071 34.615 0.00 0.00 0.00 2.41
1944 1969 6.757947 GTGCTTTAAACATCATGCCATACAAT 59.242 34.615 0.00 0.00 0.00 2.71
1952 1977 3.706183 TCATGCCATACAATCCCAACAA 58.294 40.909 0.00 0.00 0.00 2.83
1994 2019 2.137523 GCTGTTTTCTTTCCGTACGGA 58.862 47.619 32.61 32.61 43.52 4.69
2010 2035 4.645809 GACCTGATTGGGCCTCAC 57.354 61.111 4.53 0.00 38.13 3.51
2037 2062 0.757188 ACCAAACACGCCCCAATTGA 60.757 50.000 7.12 0.00 0.00 2.57
2038 2063 0.390860 CCAAACACGCCCCAATTGAA 59.609 50.000 7.12 0.00 0.00 2.69
2039 2064 1.605202 CCAAACACGCCCCAATTGAAG 60.605 52.381 7.12 0.00 0.00 3.02
2040 2065 1.068434 CAAACACGCCCCAATTGAAGT 59.932 47.619 7.12 0.00 0.00 3.01
2041 2066 0.958822 AACACGCCCCAATTGAAGTC 59.041 50.000 7.12 0.00 0.00 3.01
2042 2067 0.179004 ACACGCCCCAATTGAAGTCA 60.179 50.000 7.12 0.00 0.00 3.41
2043 2068 0.240945 CACGCCCCAATTGAAGTCAC 59.759 55.000 7.12 0.00 0.00 3.67
2044 2069 1.234615 ACGCCCCAATTGAAGTCACG 61.235 55.000 7.12 4.55 0.00 4.35
2045 2070 0.953471 CGCCCCAATTGAAGTCACGA 60.953 55.000 7.12 0.00 0.00 4.35
2046 2071 0.521735 GCCCCAATTGAAGTCACGAC 59.478 55.000 7.12 0.00 0.00 4.34
2047 2072 1.165270 CCCCAATTGAAGTCACGACC 58.835 55.000 7.12 0.00 0.00 4.79
2048 2073 1.544537 CCCCAATTGAAGTCACGACCA 60.545 52.381 7.12 0.00 0.00 4.02
2049 2074 1.535462 CCCAATTGAAGTCACGACCAC 59.465 52.381 7.12 0.00 0.00 4.16
2050 2075 1.535462 CCAATTGAAGTCACGACCACC 59.465 52.381 7.12 0.00 0.00 4.61
2051 2076 1.535462 CAATTGAAGTCACGACCACCC 59.465 52.381 0.00 0.00 0.00 4.61
2052 2077 0.320421 ATTGAAGTCACGACCACCCG 60.320 55.000 0.00 0.00 0.00 5.28
2053 2078 2.737376 GAAGTCACGACCACCCGC 60.737 66.667 0.00 0.00 0.00 6.13
2054 2079 4.657824 AAGTCACGACCACCCGCG 62.658 66.667 0.00 0.00 0.00 6.46
2061 2086 2.968697 GACCACCCGCGACGTTTT 60.969 61.111 8.23 0.00 0.00 2.43
2062 2087 3.231324 GACCACCCGCGACGTTTTG 62.231 63.158 8.23 0.00 0.00 2.44
2063 2088 4.676586 CCACCCGCGACGTTTTGC 62.677 66.667 8.23 0.00 0.00 3.68
2064 2089 3.943034 CACCCGCGACGTTTTGCA 61.943 61.111 8.23 0.00 31.51 4.08
2065 2090 3.645975 ACCCGCGACGTTTTGCAG 61.646 61.111 8.23 2.62 31.51 4.41
2066 2091 3.645975 CCCGCGACGTTTTGCAGT 61.646 61.111 8.23 0.00 31.51 4.40
2067 2092 2.425124 CCGCGACGTTTTGCAGTG 60.425 61.111 8.23 0.00 31.51 3.66
2068 2093 2.623718 CGCGACGTTTTGCAGTGA 59.376 55.556 0.00 0.00 31.51 3.41
2069 2094 1.717728 CGCGACGTTTTGCAGTGAC 60.718 57.895 0.00 0.00 31.51 3.67
2070 2095 1.350319 GCGACGTTTTGCAGTGACA 59.650 52.632 0.00 0.00 31.51 3.58
2071 2096 0.654472 GCGACGTTTTGCAGTGACAG 60.654 55.000 0.00 0.00 31.51 3.51
2072 2097 0.650512 CGACGTTTTGCAGTGACAGT 59.349 50.000 0.00 0.00 0.00 3.55
2073 2098 1.592110 CGACGTTTTGCAGTGACAGTG 60.592 52.381 5.87 5.87 0.00 3.66
2074 2099 1.396996 GACGTTTTGCAGTGACAGTGT 59.603 47.619 11.85 0.00 0.00 3.55
2075 2100 1.396996 ACGTTTTGCAGTGACAGTGTC 59.603 47.619 16.68 16.68 0.00 3.67
2076 2101 1.665679 CGTTTTGCAGTGACAGTGTCT 59.334 47.619 23.29 1.79 33.15 3.41
2077 2102 2.095853 CGTTTTGCAGTGACAGTGTCTT 59.904 45.455 23.29 9.63 33.15 3.01
2078 2103 3.426159 CGTTTTGCAGTGACAGTGTCTTT 60.426 43.478 23.29 9.28 33.15 2.52
2079 2104 3.763097 TTTGCAGTGACAGTGTCTTTG 57.237 42.857 23.29 20.12 33.15 2.77
2080 2105 1.016627 TGCAGTGACAGTGTCTTTGC 58.983 50.000 29.61 29.61 40.30 3.68
2081 2106 0.308993 GCAGTGACAGTGTCTTTGCC 59.691 55.000 27.74 16.92 36.97 4.52
2082 2107 0.947244 CAGTGACAGTGTCTTTGCCC 59.053 55.000 23.29 5.42 33.15 5.36
2083 2108 0.546122 AGTGACAGTGTCTTTGCCCA 59.454 50.000 23.29 0.00 33.15 5.36
2084 2109 1.143684 AGTGACAGTGTCTTTGCCCAT 59.856 47.619 23.29 0.00 33.15 4.00
2085 2110 1.267806 GTGACAGTGTCTTTGCCCATG 59.732 52.381 23.29 0.00 33.15 3.66
2086 2111 1.133823 TGACAGTGTCTTTGCCCATGT 60.134 47.619 23.29 0.00 33.15 3.21
2087 2112 1.956477 GACAGTGTCTTTGCCCATGTT 59.044 47.619 16.26 0.00 0.00 2.71
2088 2113 2.362077 GACAGTGTCTTTGCCCATGTTT 59.638 45.455 16.26 0.00 0.00 2.83
2089 2114 2.765699 ACAGTGTCTTTGCCCATGTTTT 59.234 40.909 0.00 0.00 0.00 2.43
2090 2115 3.125316 CAGTGTCTTTGCCCATGTTTTG 58.875 45.455 0.00 0.00 0.00 2.44
2091 2116 2.765699 AGTGTCTTTGCCCATGTTTTGT 59.234 40.909 0.00 0.00 0.00 2.83
2092 2117 2.865551 GTGTCTTTGCCCATGTTTTGTG 59.134 45.455 0.00 0.00 0.00 3.33
2093 2118 2.158986 TGTCTTTGCCCATGTTTTGTGG 60.159 45.455 0.00 0.00 36.47 4.17
2103 2128 5.467035 CCATGTTTTGTGGGATTGTACTT 57.533 39.130 0.00 0.00 32.98 2.24
2104 2129 5.229423 CCATGTTTTGTGGGATTGTACTTG 58.771 41.667 0.00 0.00 32.98 3.16
2105 2130 4.314740 TGTTTTGTGGGATTGTACTTGC 57.685 40.909 0.00 0.00 0.00 4.01
2106 2131 3.068873 TGTTTTGTGGGATTGTACTTGCC 59.931 43.478 0.00 0.00 0.00 4.52
2107 2132 1.917872 TTGTGGGATTGTACTTGCCC 58.082 50.000 9.65 9.65 41.08 5.36
2108 2133 0.322098 TGTGGGATTGTACTTGCCCG 60.322 55.000 11.24 0.00 43.70 6.13
2109 2134 1.377987 TGGGATTGTACTTGCCCGC 60.378 57.895 11.24 0.00 43.70 6.13
2110 2135 2.119029 GGGATTGTACTTGCCCGCC 61.119 63.158 0.00 0.00 0.00 6.13
2111 2136 1.377987 GGATTGTACTTGCCCGCCA 60.378 57.895 0.00 0.00 0.00 5.69
2112 2137 0.963355 GGATTGTACTTGCCCGCCAA 60.963 55.000 0.00 0.00 0.00 4.52
2121 2146 4.733542 GCCCGCCAAGCCCAACTA 62.734 66.667 0.00 0.00 0.00 2.24
2122 2147 2.750237 CCCGCCAAGCCCAACTAC 60.750 66.667 0.00 0.00 0.00 2.73
2123 2148 3.124921 CCGCCAAGCCCAACTACG 61.125 66.667 0.00 0.00 0.00 3.51
2124 2149 2.358247 CGCCAAGCCCAACTACGT 60.358 61.111 0.00 0.00 0.00 3.57
2125 2150 1.079681 CGCCAAGCCCAACTACGTA 60.080 57.895 0.00 0.00 0.00 3.57
2126 2151 0.461339 CGCCAAGCCCAACTACGTAT 60.461 55.000 0.00 0.00 0.00 3.06
2127 2152 1.746470 GCCAAGCCCAACTACGTATT 58.254 50.000 0.00 0.00 0.00 1.89
2128 2153 1.400494 GCCAAGCCCAACTACGTATTG 59.600 52.381 0.00 3.46 0.00 1.90
2129 2154 2.014128 CCAAGCCCAACTACGTATTGG 58.986 52.381 20.77 20.77 45.36 3.16
2134 2159 2.032680 CCAACTACGTATTGGGTGGG 57.967 55.000 20.31 9.38 42.57 4.61
2135 2160 1.375551 CAACTACGTATTGGGTGGGC 58.624 55.000 0.00 0.00 0.00 5.36
2136 2161 1.065709 CAACTACGTATTGGGTGGGCT 60.066 52.381 0.00 0.00 0.00 5.19
2137 2162 0.828677 ACTACGTATTGGGTGGGCTC 59.171 55.000 0.00 0.00 0.00 4.70
2138 2163 0.106149 CTACGTATTGGGTGGGCTCC 59.894 60.000 0.00 0.00 0.00 4.70
2140 2165 2.601299 GTATTGGGTGGGCTCCCC 59.399 66.667 13.81 9.83 46.48 4.81
2149 2174 2.195956 GGGCTCCCCACTATTGGC 59.804 66.667 0.00 0.00 44.65 4.52
2150 2175 2.195956 GGCTCCCCACTATTGGCC 59.804 66.667 0.00 0.00 42.35 5.36
2151 2176 2.689691 GGCTCCCCACTATTGGCCA 61.690 63.158 0.00 0.00 42.35 5.36
2152 2177 1.538666 GCTCCCCACTATTGGCCAT 59.461 57.895 6.09 0.00 42.35 4.40
2153 2178 0.825010 GCTCCCCACTATTGGCCATG 60.825 60.000 6.09 0.40 42.35 3.66
2154 2179 0.552848 CTCCCCACTATTGGCCATGT 59.447 55.000 6.09 3.08 42.35 3.21
2155 2180 0.258484 TCCCCACTATTGGCCATGTG 59.742 55.000 20.48 20.48 42.35 3.21
2156 2181 0.033208 CCCCACTATTGGCCATGTGT 60.033 55.000 23.44 13.74 42.35 3.72
2157 2182 1.392589 CCCACTATTGGCCATGTGTC 58.607 55.000 23.44 0.00 42.35 3.67
2158 2183 1.340893 CCCACTATTGGCCATGTGTCA 60.341 52.381 23.44 4.41 42.35 3.58
2159 2184 2.019249 CCACTATTGGCCATGTGTCAG 58.981 52.381 23.44 11.63 35.56 3.51
2160 2185 2.019249 CACTATTGGCCATGTGTCAGG 58.981 52.381 6.09 0.00 0.00 3.86
2161 2186 1.915489 ACTATTGGCCATGTGTCAGGA 59.085 47.619 6.09 0.00 0.00 3.86
2162 2187 2.511218 ACTATTGGCCATGTGTCAGGAT 59.489 45.455 6.09 0.00 0.00 3.24
2163 2188 2.062971 ATTGGCCATGTGTCAGGATC 57.937 50.000 6.09 0.00 0.00 3.36
2164 2189 0.697658 TTGGCCATGTGTCAGGATCA 59.302 50.000 6.09 0.00 0.00 2.92
2165 2190 0.921166 TGGCCATGTGTCAGGATCAT 59.079 50.000 0.00 0.00 0.00 2.45
2166 2191 1.315690 GGCCATGTGTCAGGATCATG 58.684 55.000 0.00 0.00 38.72 3.07
2167 2192 1.409241 GGCCATGTGTCAGGATCATGT 60.409 52.381 7.33 0.00 37.73 3.21
2168 2193 1.674441 GCCATGTGTCAGGATCATGTG 59.326 52.381 7.33 0.00 37.73 3.21
2169 2194 2.294979 CCATGTGTCAGGATCATGTGG 58.705 52.381 7.33 3.44 37.73 4.17
2170 2195 2.092807 CCATGTGTCAGGATCATGTGGA 60.093 50.000 7.33 0.00 37.73 4.02
2171 2196 3.434596 CCATGTGTCAGGATCATGTGGAT 60.435 47.826 7.33 0.00 37.73 3.41
2172 2197 4.204799 CATGTGTCAGGATCATGTGGATT 58.795 43.478 7.33 0.00 36.00 3.01
2173 2198 3.613030 TGTGTCAGGATCATGTGGATTG 58.387 45.455 7.33 0.00 36.00 2.67
2174 2199 3.263937 TGTGTCAGGATCATGTGGATTGA 59.736 43.478 7.33 0.00 36.00 2.57
2175 2200 3.875727 GTGTCAGGATCATGTGGATTGAG 59.124 47.826 7.33 0.00 36.00 3.02
2176 2201 3.118149 TGTCAGGATCATGTGGATTGAGG 60.118 47.826 7.33 0.00 36.00 3.86
2177 2202 3.117745 TCAGGATCATGTGGATTGAGGT 58.882 45.455 7.33 0.00 36.00 3.85
2178 2203 3.118149 TCAGGATCATGTGGATTGAGGTG 60.118 47.826 7.33 0.00 36.00 4.00
2179 2204 2.848694 AGGATCATGTGGATTGAGGTGT 59.151 45.455 0.00 0.00 36.00 4.16
2180 2205 2.947652 GGATCATGTGGATTGAGGTGTG 59.052 50.000 0.00 0.00 36.00 3.82
2181 2206 3.370846 GGATCATGTGGATTGAGGTGTGA 60.371 47.826 0.00 0.00 36.00 3.58
2182 2207 4.458397 GATCATGTGGATTGAGGTGTGAT 58.542 43.478 0.00 0.00 36.00 3.06
2183 2208 4.305539 TCATGTGGATTGAGGTGTGATT 57.694 40.909 0.00 0.00 0.00 2.57
2184 2209 4.665451 TCATGTGGATTGAGGTGTGATTT 58.335 39.130 0.00 0.00 0.00 2.17
2185 2210 4.701651 TCATGTGGATTGAGGTGTGATTTC 59.298 41.667 0.00 0.00 0.00 2.17
2186 2211 3.420893 TGTGGATTGAGGTGTGATTTCC 58.579 45.455 0.00 0.00 0.00 3.13
2187 2212 3.181435 TGTGGATTGAGGTGTGATTTCCA 60.181 43.478 0.00 0.00 0.00 3.53
2188 2213 3.191371 GTGGATTGAGGTGTGATTTCCAC 59.809 47.826 3.68 3.68 43.26 4.02
2195 2220 4.397348 GTGATTTCCACGGGCAGT 57.603 55.556 0.00 0.00 35.86 4.40
2196 2221 2.171635 GTGATTTCCACGGGCAGTC 58.828 57.895 0.00 0.00 35.86 3.51
2197 2222 1.002624 TGATTTCCACGGGCAGTCC 60.003 57.895 0.00 0.00 0.00 3.85
2207 2232 2.434359 GGCAGTCCCACGTGTAGC 60.434 66.667 15.65 10.21 0.00 3.58
2208 2233 2.657237 GCAGTCCCACGTGTAGCT 59.343 61.111 15.65 6.00 0.00 3.32
2209 2234 1.004918 GCAGTCCCACGTGTAGCTT 60.005 57.895 15.65 0.00 0.00 3.74
2210 2235 1.291877 GCAGTCCCACGTGTAGCTTG 61.292 60.000 15.65 7.30 0.00 4.01
2211 2236 0.317160 CAGTCCCACGTGTAGCTTGA 59.683 55.000 15.65 0.00 0.00 3.02
2212 2237 0.603569 AGTCCCACGTGTAGCTTGAG 59.396 55.000 15.65 0.00 0.00 3.02
2213 2238 0.601558 GTCCCACGTGTAGCTTGAGA 59.398 55.000 15.65 0.00 0.00 3.27
2214 2239 0.888619 TCCCACGTGTAGCTTGAGAG 59.111 55.000 15.65 0.00 0.00 3.20
2215 2240 0.888619 CCCACGTGTAGCTTGAGAGA 59.111 55.000 15.65 0.00 0.00 3.10
2216 2241 1.478510 CCCACGTGTAGCTTGAGAGAT 59.521 52.381 15.65 0.00 0.00 2.75
2217 2242 2.534298 CCACGTGTAGCTTGAGAGATG 58.466 52.381 15.65 0.00 0.00 2.90
2218 2243 2.534298 CACGTGTAGCTTGAGAGATGG 58.466 52.381 7.58 0.00 0.00 3.51
2219 2244 2.094494 CACGTGTAGCTTGAGAGATGGT 60.094 50.000 7.58 0.00 0.00 3.55
2220 2245 2.164624 ACGTGTAGCTTGAGAGATGGTC 59.835 50.000 0.00 0.00 0.00 4.02
2221 2246 2.164422 CGTGTAGCTTGAGAGATGGTCA 59.836 50.000 0.00 0.00 0.00 4.02
2222 2247 3.181482 CGTGTAGCTTGAGAGATGGTCAT 60.181 47.826 0.00 0.00 0.00 3.06
2223 2248 4.118410 GTGTAGCTTGAGAGATGGTCATG 58.882 47.826 0.00 0.00 0.00 3.07
2224 2249 2.328819 AGCTTGAGAGATGGTCATGC 57.671 50.000 3.46 3.46 42.54 4.06
2225 2250 1.838715 AGCTTGAGAGATGGTCATGCT 59.161 47.619 7.46 7.46 45.63 3.79
2226 2251 2.158928 AGCTTGAGAGATGGTCATGCTC 60.159 50.000 7.46 0.00 46.83 4.26
2227 2252 2.158928 GCTTGAGAGATGGTCATGCTCT 60.159 50.000 10.47 10.47 40.31 4.09
2228 2253 3.682155 GCTTGAGAGATGGTCATGCTCTT 60.682 47.826 0.00 0.00 40.31 2.85
2229 2254 3.538634 TGAGAGATGGTCATGCTCTTG 57.461 47.619 0.00 0.00 39.00 3.02
2230 2255 2.211806 GAGAGATGGTCATGCTCTTGC 58.788 52.381 0.00 0.00 39.00 4.01
2231 2256 0.935898 GAGATGGTCATGCTCTTGCG 59.064 55.000 0.00 0.00 43.34 4.85
2232 2257 0.463295 AGATGGTCATGCTCTTGCGG 60.463 55.000 0.00 0.00 43.34 5.69
2233 2258 0.745845 GATGGTCATGCTCTTGCGGT 60.746 55.000 0.00 0.00 43.34 5.68
2234 2259 0.745845 ATGGTCATGCTCTTGCGGTC 60.746 55.000 0.00 0.00 43.34 4.79
2235 2260 1.078848 GGTCATGCTCTTGCGGTCT 60.079 57.895 0.00 0.00 43.34 3.85
2236 2261 0.674895 GGTCATGCTCTTGCGGTCTT 60.675 55.000 0.00 0.00 43.34 3.01
2237 2262 0.445436 GTCATGCTCTTGCGGTCTTG 59.555 55.000 0.00 0.00 43.34 3.02
2238 2263 1.136147 CATGCTCTTGCGGTCTTGC 59.864 57.895 0.00 0.00 43.34 4.01
2239 2264 2.042831 ATGCTCTTGCGGTCTTGCC 61.043 57.895 0.00 0.00 43.34 4.52
2240 2265 2.669569 GCTCTTGCGGTCTTGCCA 60.670 61.111 0.00 0.00 36.97 4.92
2241 2266 2.970974 GCTCTTGCGGTCTTGCCAC 61.971 63.158 0.00 0.00 36.97 5.01
2242 2267 2.664851 TCTTGCGGTCTTGCCACG 60.665 61.111 0.00 0.00 36.97 4.94
2247 2272 2.735478 CGGTCTTGCCACGCGTAA 60.735 61.111 13.44 1.11 36.97 3.18
2248 2273 2.311701 CGGTCTTGCCACGCGTAAA 61.312 57.895 13.44 6.20 36.97 2.01
2249 2274 1.632046 CGGTCTTGCCACGCGTAAAT 61.632 55.000 13.44 0.00 36.97 1.40
2250 2275 0.519961 GGTCTTGCCACGCGTAAATT 59.480 50.000 13.44 0.00 37.17 1.82
2251 2276 1.068816 GGTCTTGCCACGCGTAAATTT 60.069 47.619 13.44 0.00 37.17 1.82
2252 2277 2.606065 GGTCTTGCCACGCGTAAATTTT 60.606 45.455 13.44 0.00 37.17 1.82
2253 2278 3.365164 GGTCTTGCCACGCGTAAATTTTA 60.365 43.478 13.44 0.00 37.17 1.52
2254 2279 4.408694 GTCTTGCCACGCGTAAATTTTAT 58.591 39.130 13.44 0.00 0.00 1.40
2255 2280 4.854839 GTCTTGCCACGCGTAAATTTTATT 59.145 37.500 13.44 0.00 0.00 1.40
2256 2281 5.343860 GTCTTGCCACGCGTAAATTTTATTT 59.656 36.000 13.44 0.00 0.00 1.40
2257 2282 5.921408 TCTTGCCACGCGTAAATTTTATTTT 59.079 32.000 13.44 0.00 0.00 1.82
2258 2283 6.421202 TCTTGCCACGCGTAAATTTTATTTTT 59.579 30.769 13.44 0.00 0.00 1.94
2259 2284 5.905903 TGCCACGCGTAAATTTTATTTTTG 58.094 33.333 13.44 0.00 0.00 2.44
2260 2285 5.690409 TGCCACGCGTAAATTTTATTTTTGA 59.310 32.000 13.44 0.00 0.00 2.69
2261 2286 6.200286 TGCCACGCGTAAATTTTATTTTTGAA 59.800 30.769 13.44 0.00 0.00 2.69
2262 2287 7.064064 GCCACGCGTAAATTTTATTTTTGAAA 58.936 30.769 13.44 0.00 0.00 2.69
2263 2288 7.583040 GCCACGCGTAAATTTTATTTTTGAAAA 59.417 29.630 13.44 0.00 0.00 2.29
2264 2289 9.086996 CCACGCGTAAATTTTATTTTTGAAAAG 57.913 29.630 13.44 0.00 0.00 2.27
2265 2290 9.836739 CACGCGTAAATTTTATTTTTGAAAAGA 57.163 25.926 13.44 0.00 0.00 2.52
2280 2305 7.645058 TTTGAAAAGAATGTATCCTCCATCC 57.355 36.000 0.00 0.00 0.00 3.51
2281 2306 6.581388 TGAAAAGAATGTATCCTCCATCCT 57.419 37.500 0.00 0.00 0.00 3.24
2282 2307 6.595682 TGAAAAGAATGTATCCTCCATCCTC 58.404 40.000 0.00 0.00 0.00 3.71
2283 2308 6.388100 TGAAAAGAATGTATCCTCCATCCTCT 59.612 38.462 0.00 0.00 0.00 3.69
2284 2309 5.822132 AAGAATGTATCCTCCATCCTCTG 57.178 43.478 0.00 0.00 0.00 3.35
2285 2310 3.582208 AGAATGTATCCTCCATCCTCTGC 59.418 47.826 0.00 0.00 0.00 4.26
2286 2311 2.477104 TGTATCCTCCATCCTCTGCA 57.523 50.000 0.00 0.00 0.00 4.41
2287 2312 2.981921 TGTATCCTCCATCCTCTGCAT 58.018 47.619 0.00 0.00 0.00 3.96
2288 2313 3.321039 TGTATCCTCCATCCTCTGCATT 58.679 45.455 0.00 0.00 0.00 3.56
2289 2314 2.953284 ATCCTCCATCCTCTGCATTG 57.047 50.000 0.00 0.00 0.00 2.82
2290 2315 1.883678 TCCTCCATCCTCTGCATTGA 58.116 50.000 0.00 0.00 0.00 2.57
2291 2316 2.415624 TCCTCCATCCTCTGCATTGAT 58.584 47.619 0.00 0.00 0.00 2.57
2292 2317 2.781757 TCCTCCATCCTCTGCATTGATT 59.218 45.455 0.00 0.00 0.00 2.57
2293 2318 2.885266 CCTCCATCCTCTGCATTGATTG 59.115 50.000 0.00 0.00 0.00 2.67
2294 2319 3.434596 CCTCCATCCTCTGCATTGATTGA 60.435 47.826 0.00 0.00 0.00 2.57
2295 2320 4.399219 CTCCATCCTCTGCATTGATTGAT 58.601 43.478 0.00 0.00 0.00 2.57
2296 2321 4.142038 TCCATCCTCTGCATTGATTGATG 58.858 43.478 0.00 0.00 0.00 3.07
2305 2330 2.124122 CATTGATTGATGCACATGCCG 58.876 47.619 0.49 0.00 41.18 5.69
2306 2331 0.179132 TTGATTGATGCACATGCCGC 60.179 50.000 0.49 0.00 41.18 6.53
2307 2332 1.313812 TGATTGATGCACATGCCGCA 61.314 50.000 12.33 12.33 44.94 5.69
2346 2371 9.777297 AAATATGCCAAGTAAAAGTCAAAACAT 57.223 25.926 0.00 0.00 0.00 2.71
2347 2372 8.986477 ATATGCCAAGTAAAAGTCAAAACATC 57.014 30.769 0.00 0.00 0.00 3.06
2348 2373 5.277825 TGCCAAGTAAAAGTCAAAACATCG 58.722 37.500 0.00 0.00 0.00 3.84
2349 2374 5.066634 TGCCAAGTAAAAGTCAAAACATCGA 59.933 36.000 0.00 0.00 0.00 3.59
2350 2375 5.398416 GCCAAGTAAAAGTCAAAACATCGAC 59.602 40.000 0.00 0.00 0.00 4.20
2351 2376 6.491394 CCAAGTAAAAGTCAAAACATCGACA 58.509 36.000 0.00 0.00 34.48 4.35
2352 2377 7.138736 CCAAGTAAAAGTCAAAACATCGACAT 58.861 34.615 0.00 0.00 34.48 3.06
2353 2378 7.647715 CCAAGTAAAAGTCAAAACATCGACATT 59.352 33.333 0.00 0.00 34.48 2.71
2354 2379 8.471457 CAAGTAAAAGTCAAAACATCGACATTG 58.529 33.333 0.00 0.00 34.48 2.82
2355 2380 7.925993 AGTAAAAGTCAAAACATCGACATTGA 58.074 30.769 0.00 0.00 34.48 2.57
2356 2381 8.402472 AGTAAAAGTCAAAACATCGACATTGAA 58.598 29.630 5.82 0.00 33.93 2.69
2357 2382 7.449934 AAAAGTCAAAACATCGACATTGAAC 57.550 32.000 5.82 2.66 33.93 3.18
2358 2383 5.749596 AGTCAAAACATCGACATTGAACA 57.250 34.783 5.82 0.00 33.93 3.18
2359 2384 6.130298 AGTCAAAACATCGACATTGAACAA 57.870 33.333 5.82 0.00 33.93 2.83
2360 2385 6.559810 AGTCAAAACATCGACATTGAACAAA 58.440 32.000 5.82 0.00 33.93 2.83
2361 2386 7.202526 AGTCAAAACATCGACATTGAACAAAT 58.797 30.769 5.82 0.00 33.93 2.32
2362 2387 7.706179 AGTCAAAACATCGACATTGAACAAATT 59.294 29.630 5.82 0.00 33.93 1.82
2363 2388 7.788846 GTCAAAACATCGACATTGAACAAATTG 59.211 33.333 5.82 0.00 33.93 2.32
2364 2389 6.768029 AAACATCGACATTGAACAAATTGG 57.232 33.333 0.00 0.00 0.00 3.16
2365 2390 4.236935 ACATCGACATTGAACAAATTGGC 58.763 39.130 0.00 0.00 0.00 4.52
2366 2391 2.927429 TCGACATTGAACAAATTGGCG 58.073 42.857 9.27 9.27 32.42 5.69
2367 2392 2.550180 TCGACATTGAACAAATTGGCGA 59.450 40.909 12.88 12.88 35.69 5.54
2368 2393 3.003793 TCGACATTGAACAAATTGGCGAA 59.996 39.130 14.05 2.25 35.37 4.70
2369 2394 3.119463 CGACATTGAACAAATTGGCGAAC 59.881 43.478 9.80 0.00 32.70 3.95
2370 2395 4.047822 GACATTGAACAAATTGGCGAACA 58.952 39.130 0.00 0.00 0.00 3.18
2371 2396 4.630111 ACATTGAACAAATTGGCGAACAT 58.370 34.783 0.00 0.00 0.00 2.71
2372 2397 5.777802 ACATTGAACAAATTGGCGAACATA 58.222 33.333 0.00 0.00 0.00 2.29
2373 2398 5.633182 ACATTGAACAAATTGGCGAACATAC 59.367 36.000 0.00 0.00 0.00 2.39
2374 2399 4.167554 TGAACAAATTGGCGAACATACC 57.832 40.909 0.00 0.00 0.00 2.73
2375 2400 3.057174 TGAACAAATTGGCGAACATACCC 60.057 43.478 0.00 0.00 0.00 3.69
2376 2401 2.520069 ACAAATTGGCGAACATACCCA 58.480 42.857 0.00 0.00 0.00 4.51
2377 2402 3.096092 ACAAATTGGCGAACATACCCAT 58.904 40.909 0.00 0.00 0.00 4.00
2378 2403 3.513515 ACAAATTGGCGAACATACCCATT 59.486 39.130 0.00 0.00 0.00 3.16
2379 2404 4.707448 ACAAATTGGCGAACATACCCATTA 59.293 37.500 0.00 0.00 0.00 1.90
2380 2405 5.362430 ACAAATTGGCGAACATACCCATTAT 59.638 36.000 0.00 0.00 0.00 1.28
2381 2406 5.705609 AATTGGCGAACATACCCATTATC 57.294 39.130 0.00 0.00 0.00 1.75
2382 2407 4.431416 TTGGCGAACATACCCATTATCT 57.569 40.909 0.00 0.00 0.00 1.98
2383 2408 4.002906 TGGCGAACATACCCATTATCTC 57.997 45.455 0.00 0.00 0.00 2.75
2384 2409 3.244422 TGGCGAACATACCCATTATCTCC 60.244 47.826 0.00 0.00 0.00 3.71
2385 2410 3.244422 GGCGAACATACCCATTATCTCCA 60.244 47.826 0.00 0.00 0.00 3.86
2386 2411 4.385825 GCGAACATACCCATTATCTCCAA 58.614 43.478 0.00 0.00 0.00 3.53
2387 2412 4.819630 GCGAACATACCCATTATCTCCAAA 59.180 41.667 0.00 0.00 0.00 3.28
2388 2413 5.298276 GCGAACATACCCATTATCTCCAAAA 59.702 40.000 0.00 0.00 0.00 2.44
2389 2414 6.016276 GCGAACATACCCATTATCTCCAAAAT 60.016 38.462 0.00 0.00 0.00 1.82
2390 2415 7.470009 GCGAACATACCCATTATCTCCAAAATT 60.470 37.037 0.00 0.00 0.00 1.82
2391 2416 8.076178 CGAACATACCCATTATCTCCAAAATTC 58.924 37.037 0.00 0.00 0.00 2.17
2392 2417 7.839680 ACATACCCATTATCTCCAAAATTCC 57.160 36.000 0.00 0.00 0.00 3.01
2393 2418 7.361438 ACATACCCATTATCTCCAAAATTCCA 58.639 34.615 0.00 0.00 0.00 3.53
2394 2419 7.287696 ACATACCCATTATCTCCAAAATTCCAC 59.712 37.037 0.00 0.00 0.00 4.02
2395 2420 4.962362 ACCCATTATCTCCAAAATTCCACC 59.038 41.667 0.00 0.00 0.00 4.61
2396 2421 4.037923 CCCATTATCTCCAAAATTCCACCG 59.962 45.833 0.00 0.00 0.00 4.94
2397 2422 4.499696 CCATTATCTCCAAAATTCCACCGC 60.500 45.833 0.00 0.00 0.00 5.68
2398 2423 2.214376 ATCTCCAAAATTCCACCGCA 57.786 45.000 0.00 0.00 0.00 5.69
2399 2424 1.988293 TCTCCAAAATTCCACCGCAA 58.012 45.000 0.00 0.00 0.00 4.85
2400 2425 2.311463 TCTCCAAAATTCCACCGCAAA 58.689 42.857 0.00 0.00 0.00 3.68
2401 2426 2.035321 TCTCCAAAATTCCACCGCAAAC 59.965 45.455 0.00 0.00 0.00 2.93
2402 2427 1.069358 TCCAAAATTCCACCGCAAACC 59.931 47.619 0.00 0.00 0.00 3.27
2403 2428 1.507562 CAAAATTCCACCGCAAACCC 58.492 50.000 0.00 0.00 0.00 4.11
2404 2429 0.032815 AAAATTCCACCGCAAACCCG 59.967 50.000 0.00 0.00 0.00 5.28
2405 2430 0.824182 AAATTCCACCGCAAACCCGA 60.824 50.000 0.00 0.00 0.00 5.14
2406 2431 0.610785 AATTCCACCGCAAACCCGAT 60.611 50.000 0.00 0.00 0.00 4.18
2407 2432 1.312371 ATTCCACCGCAAACCCGATG 61.312 55.000 0.00 0.00 0.00 3.84
2408 2433 2.359354 CCACCGCAAACCCGATGA 60.359 61.111 0.00 0.00 0.00 2.92
2409 2434 2.686816 CCACCGCAAACCCGATGAC 61.687 63.158 0.00 0.00 0.00 3.06
2410 2435 1.963855 CACCGCAAACCCGATGACA 60.964 57.895 0.00 0.00 0.00 3.58
2411 2436 1.002624 ACCGCAAACCCGATGACAT 60.003 52.632 0.00 0.00 0.00 3.06
2412 2437 1.305219 ACCGCAAACCCGATGACATG 61.305 55.000 0.00 0.00 0.00 3.21
2413 2438 1.305219 CCGCAAACCCGATGACATGT 61.305 55.000 0.00 0.00 0.00 3.21
2414 2439 0.179192 CGCAAACCCGATGACATGTG 60.179 55.000 1.15 0.00 0.00 3.21
2415 2440 1.164411 GCAAACCCGATGACATGTGA 58.836 50.000 1.15 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.105224 TGGGGTACACAACAGACACG 59.895 55.000 0.00 0.00 0.00 4.49
95 96 0.642156 GAAGGGGGATTGGGGGATTT 59.358 55.000 0.00 0.00 0.00 2.17
117 118 6.260936 CAGAATAAAGGTAGATGCGGTTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
119 120 5.105106 TCAGAATAAAGGTAGATGCGGTTGA 60.105 40.000 0.00 0.00 0.00 3.18
122 123 5.305644 AGATCAGAATAAAGGTAGATGCGGT 59.694 40.000 0.00 0.00 0.00 5.68
135 136 9.671279 TTTCTAGTTCATGCAAGATCAGAATAA 57.329 29.630 9.69 0.00 0.00 1.40
274 275 2.049372 AGCAAATGGGCTCAAAAACCT 58.951 42.857 0.00 0.00 41.05 3.50
276 277 2.802247 GTCAGCAAATGGGCTCAAAAAC 59.198 45.455 0.00 0.00 43.68 2.43
355 359 1.127343 CAAGGAGGAGAGTGGGGATC 58.873 60.000 0.00 0.00 0.00 3.36
373 377 2.226674 CGATTATGCTCTCTAGGCGTCA 59.773 50.000 0.00 0.00 0.00 4.35
663 667 1.477553 GCAGCTCCAAATTGATGGGA 58.522 50.000 0.00 0.00 41.05 4.37
726 730 2.273123 CCACCCATAGCAGCAGCA 59.727 61.111 3.17 0.00 45.49 4.41
923 927 1.192146 CCTTCTGGACAGGTTCCCGA 61.192 60.000 0.00 0.00 45.17 5.14
1177 1181 3.701604 ATCTGCTTCGGTCGACGGC 62.702 63.158 17.55 14.56 44.45 5.68
1178 1182 1.874019 CATCTGCTTCGGTCGACGG 60.874 63.158 16.37 16.37 44.45 4.79
1179 1183 0.248661 ATCATCTGCTTCGGTCGACG 60.249 55.000 9.92 5.26 46.11 5.12
1180 1184 1.482278 GATCATCTGCTTCGGTCGAC 58.518 55.000 7.13 7.13 0.00 4.20
1181 1185 0.385751 GGATCATCTGCTTCGGTCGA 59.614 55.000 0.00 0.00 0.00 4.20
1182 1186 0.598680 GGGATCATCTGCTTCGGTCG 60.599 60.000 0.00 0.00 0.00 4.79
1183 1187 0.598680 CGGGATCATCTGCTTCGGTC 60.599 60.000 0.00 0.00 0.00 4.79
1184 1188 1.043116 TCGGGATCATCTGCTTCGGT 61.043 55.000 0.00 0.00 0.00 4.69
1185 1189 0.598680 GTCGGGATCATCTGCTTCGG 60.599 60.000 0.00 0.00 0.00 4.30
1186 1190 0.103026 TGTCGGGATCATCTGCTTCG 59.897 55.000 0.00 0.00 0.00 3.79
1187 1191 2.540265 ATGTCGGGATCATCTGCTTC 57.460 50.000 0.00 0.00 0.00 3.86
1188 1192 3.287867 AAATGTCGGGATCATCTGCTT 57.712 42.857 0.00 0.00 0.00 3.91
1189 1193 2.947652 CAAAATGTCGGGATCATCTGCT 59.052 45.455 0.00 0.00 0.00 4.24
1190 1194 2.033801 CCAAAATGTCGGGATCATCTGC 59.966 50.000 0.00 0.00 0.00 4.26
1191 1195 3.065786 CACCAAAATGTCGGGATCATCTG 59.934 47.826 0.00 0.00 0.00 2.90
1192 1196 3.282021 CACCAAAATGTCGGGATCATCT 58.718 45.455 0.00 0.00 0.00 2.90
1193 1197 3.016736 ACACCAAAATGTCGGGATCATC 58.983 45.455 0.00 0.00 0.00 2.92
1194 1198 2.754552 CACACCAAAATGTCGGGATCAT 59.245 45.455 0.00 0.00 0.00 2.45
1195 1199 2.158559 CACACCAAAATGTCGGGATCA 58.841 47.619 0.00 0.00 0.00 2.92
1196 1200 1.472480 CCACACCAAAATGTCGGGATC 59.528 52.381 0.00 0.00 0.00 3.36
1197 1201 1.544724 CCACACCAAAATGTCGGGAT 58.455 50.000 0.00 0.00 0.00 3.85
1198 1202 1.175983 GCCACACCAAAATGTCGGGA 61.176 55.000 0.00 0.00 0.00 5.14
1199 1203 1.178534 AGCCACACCAAAATGTCGGG 61.179 55.000 0.00 0.00 0.00 5.14
1200 1204 0.240945 GAGCCACACCAAAATGTCGG 59.759 55.000 0.00 0.00 0.00 4.79
1201 1205 1.238439 AGAGCCACACCAAAATGTCG 58.762 50.000 0.00 0.00 0.00 4.35
1202 1206 3.428045 GCATAGAGCCACACCAAAATGTC 60.428 47.826 0.00 0.00 37.23 3.06
1203 1207 2.493278 GCATAGAGCCACACCAAAATGT 59.507 45.455 0.00 0.00 37.23 2.71
1204 1208 3.155093 GCATAGAGCCACACCAAAATG 57.845 47.619 0.00 0.00 37.23 2.32
1355 1359 1.608717 TTGCACCGGTGGTTTTGCTT 61.609 50.000 34.58 0.00 31.02 3.91
1394 1400 4.141574 CCCTAATCTATCCCAAACCGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
1517 1524 5.530171 AGCATGGCAATTCATACTAGTTCAG 59.470 40.000 0.00 0.00 0.00 3.02
1581 1593 0.820482 TCGATCCGGCGGTAGATTCA 60.820 55.000 27.32 4.44 0.00 2.57
1730 1755 2.689034 CCCACTCTCCCCCACTCC 60.689 72.222 0.00 0.00 0.00 3.85
1773 1798 1.887707 GCGCCGGCAGTTATTAGCT 60.888 57.895 28.98 0.00 39.62 3.32
1873 1898 2.468040 GCTCGAATCGACAGTTTATCCG 59.532 50.000 0.00 0.00 0.00 4.18
1877 1902 2.624316 ACGCTCGAATCGACAGTTTA 57.376 45.000 0.00 0.00 0.00 2.01
1940 1965 3.119029 GCTGCATACATTGTTGGGATTGT 60.119 43.478 0.00 0.00 0.00 2.71
1943 1968 2.034124 GGCTGCATACATTGTTGGGAT 58.966 47.619 0.50 0.00 0.00 3.85
1944 1969 1.272369 TGGCTGCATACATTGTTGGGA 60.272 47.619 0.50 0.00 0.00 4.37
1952 1977 4.689071 CATGTTTGATTGGCTGCATACAT 58.311 39.130 0.50 0.00 37.22 2.29
1994 2019 2.671070 CGTGAGGCCCAATCAGGT 59.329 61.111 0.00 0.00 34.66 4.00
2010 2035 2.353376 CGTGTTTGGTTGCCTGCG 60.353 61.111 0.00 0.00 0.00 5.18
2037 2062 4.657824 CGCGGGTGGTCGTGACTT 62.658 66.667 0.00 0.00 42.50 3.01
2044 2069 2.968697 AAAACGTCGCGGGTGGTC 60.969 61.111 6.13 0.00 0.00 4.02
2045 2070 3.273834 CAAAACGTCGCGGGTGGT 61.274 61.111 6.13 0.00 0.00 4.16
2046 2071 4.676586 GCAAAACGTCGCGGGTGG 62.677 66.667 6.13 0.20 0.00 4.61
2047 2072 3.855209 CTGCAAAACGTCGCGGGTG 62.855 63.158 6.13 0.00 0.00 4.61
2048 2073 3.645975 CTGCAAAACGTCGCGGGT 61.646 61.111 6.13 1.23 0.00 5.28
2049 2074 3.645975 ACTGCAAAACGTCGCGGG 61.646 61.111 6.13 0.44 38.90 6.13
2050 2075 2.425124 CACTGCAAAACGTCGCGG 60.425 61.111 6.13 10.80 40.48 6.46
2051 2076 1.717728 GTCACTGCAAAACGTCGCG 60.718 57.895 0.00 0.00 0.00 5.87
2052 2077 0.654472 CTGTCACTGCAAAACGTCGC 60.654 55.000 0.00 0.00 0.00 5.19
2053 2078 0.650512 ACTGTCACTGCAAAACGTCG 59.349 50.000 0.00 0.00 0.00 5.12
2054 2079 1.396996 ACACTGTCACTGCAAAACGTC 59.603 47.619 0.00 0.00 0.00 4.34
2055 2080 1.396996 GACACTGTCACTGCAAAACGT 59.603 47.619 4.17 0.00 32.09 3.99
2056 2081 1.665679 AGACACTGTCACTGCAAAACG 59.334 47.619 11.80 0.00 34.60 3.60
2057 2082 3.764885 AAGACACTGTCACTGCAAAAC 57.235 42.857 11.80 0.00 34.60 2.43
2058 2083 3.673052 GCAAAGACACTGTCACTGCAAAA 60.673 43.478 21.78 0.00 40.05 2.44
2059 2084 2.159393 GCAAAGACACTGTCACTGCAAA 60.159 45.455 21.78 0.00 40.05 3.68
2060 2085 1.401552 GCAAAGACACTGTCACTGCAA 59.598 47.619 21.78 0.00 40.05 4.08
2061 2086 1.016627 GCAAAGACACTGTCACTGCA 58.983 50.000 21.78 0.00 40.05 4.41
2062 2087 0.308993 GGCAAAGACACTGTCACTGC 59.691 55.000 19.86 19.86 39.78 4.40
2063 2088 0.947244 GGGCAAAGACACTGTCACTG 59.053 55.000 11.80 8.66 34.60 3.66
2064 2089 0.546122 TGGGCAAAGACACTGTCACT 59.454 50.000 11.80 0.00 34.60 3.41
2065 2090 1.267806 CATGGGCAAAGACACTGTCAC 59.732 52.381 11.80 0.00 34.60 3.67
2066 2091 1.133823 ACATGGGCAAAGACACTGTCA 60.134 47.619 11.80 0.00 34.60 3.58
2067 2092 1.609208 ACATGGGCAAAGACACTGTC 58.391 50.000 0.38 0.38 0.00 3.51
2068 2093 2.071778 AACATGGGCAAAGACACTGT 57.928 45.000 0.00 0.00 0.00 3.55
2069 2094 3.125316 CAAAACATGGGCAAAGACACTG 58.875 45.455 0.00 0.00 0.00 3.66
2070 2095 2.765699 ACAAAACATGGGCAAAGACACT 59.234 40.909 0.00 0.00 0.00 3.55
2071 2096 2.865551 CACAAAACATGGGCAAAGACAC 59.134 45.455 0.00 0.00 0.00 3.67
2072 2097 2.158986 CCACAAAACATGGGCAAAGACA 60.159 45.455 0.00 0.00 33.18 3.41
2073 2098 2.482864 CCACAAAACATGGGCAAAGAC 58.517 47.619 0.00 0.00 33.18 3.01
2074 2099 2.906691 CCACAAAACATGGGCAAAGA 57.093 45.000 0.00 0.00 33.18 2.52
2081 2106 5.229423 CAAGTACAATCCCACAAAACATGG 58.771 41.667 0.00 0.00 36.94 3.66
2082 2107 4.685628 GCAAGTACAATCCCACAAAACATG 59.314 41.667 0.00 0.00 0.00 3.21
2083 2108 4.262420 GGCAAGTACAATCCCACAAAACAT 60.262 41.667 0.00 0.00 0.00 2.71
2084 2109 3.068873 GGCAAGTACAATCCCACAAAACA 59.931 43.478 0.00 0.00 0.00 2.83
2085 2110 3.554129 GGGCAAGTACAATCCCACAAAAC 60.554 47.826 10.39 0.00 38.62 2.43
2086 2111 2.630580 GGGCAAGTACAATCCCACAAAA 59.369 45.455 10.39 0.00 38.62 2.44
2087 2112 2.243810 GGGCAAGTACAATCCCACAAA 58.756 47.619 10.39 0.00 38.62 2.83
2088 2113 1.884497 CGGGCAAGTACAATCCCACAA 60.884 52.381 14.21 0.00 38.68 3.33
2089 2114 0.322098 CGGGCAAGTACAATCCCACA 60.322 55.000 14.21 0.00 38.68 4.17
2090 2115 1.654023 GCGGGCAAGTACAATCCCAC 61.654 60.000 14.21 3.66 38.68 4.61
2091 2116 1.377987 GCGGGCAAGTACAATCCCA 60.378 57.895 14.21 0.00 38.68 4.37
2092 2117 2.119029 GGCGGGCAAGTACAATCCC 61.119 63.158 0.00 0.77 35.42 3.85
2093 2118 0.963355 TTGGCGGGCAAGTACAATCC 60.963 55.000 13.46 0.00 0.00 3.01
2094 2119 0.451783 CTTGGCGGGCAAGTACAATC 59.548 55.000 29.87 0.00 0.00 2.67
2095 2120 1.595093 GCTTGGCGGGCAAGTACAAT 61.595 55.000 35.10 0.00 32.59 2.71
2096 2121 2.265182 GCTTGGCGGGCAAGTACAA 61.265 57.895 35.10 8.48 32.59 2.41
2097 2122 2.671619 GCTTGGCGGGCAAGTACA 60.672 61.111 35.10 9.18 32.59 2.90
2098 2123 3.440415 GGCTTGGCGGGCAAGTAC 61.440 66.667 35.10 26.85 32.59 2.73
2099 2124 4.733542 GGGCTTGGCGGGCAAGTA 62.734 66.667 35.10 9.89 32.59 2.24
2104 2129 4.733542 TAGTTGGGCTTGGCGGGC 62.734 66.667 0.00 0.00 0.00 6.13
2105 2130 2.750237 GTAGTTGGGCTTGGCGGG 60.750 66.667 0.00 0.00 0.00 6.13
2106 2131 2.510064 TACGTAGTTGGGCTTGGCGG 62.510 60.000 0.00 0.00 37.78 6.13
2107 2132 0.461339 ATACGTAGTTGGGCTTGGCG 60.461 55.000 0.08 0.00 37.78 5.69
2108 2133 1.400494 CAATACGTAGTTGGGCTTGGC 59.600 52.381 0.08 0.00 37.78 4.52
2109 2134 2.014128 CCAATACGTAGTTGGGCTTGG 58.986 52.381 20.31 14.70 37.78 3.61
2115 2140 2.015081 GCCCACCCAATACGTAGTTGG 61.015 57.143 20.77 20.77 37.78 3.77
2116 2141 1.065709 AGCCCACCCAATACGTAGTTG 60.066 52.381 0.08 6.15 37.78 3.16
2117 2142 1.208776 GAGCCCACCCAATACGTAGTT 59.791 52.381 0.08 0.00 37.78 2.24
2119 2144 0.106149 GGAGCCCACCCAATACGTAG 59.894 60.000 0.08 0.00 0.00 3.51
2120 2145 2.214235 GGAGCCCACCCAATACGTA 58.786 57.895 0.00 0.00 0.00 3.57
2121 2146 2.995547 GGAGCCCACCCAATACGT 59.004 61.111 0.00 0.00 0.00 3.57
2132 2157 2.195956 GCCAATAGTGGGGAGCCC 59.804 66.667 11.86 0.00 46.09 5.19
2133 2158 2.011617 ATGGCCAATAGTGGGGAGCC 62.012 60.000 10.96 6.29 46.09 4.70
2134 2159 0.825010 CATGGCCAATAGTGGGGAGC 60.825 60.000 10.96 0.00 46.09 4.70
2135 2160 0.552848 ACATGGCCAATAGTGGGGAG 59.447 55.000 10.96 0.00 46.09 4.30
2136 2161 0.258484 CACATGGCCAATAGTGGGGA 59.742 55.000 21.97 0.00 46.09 4.81
2137 2162 0.033208 ACACATGGCCAATAGTGGGG 60.033 55.000 28.75 15.31 46.09 4.96
2138 2163 1.340893 TGACACATGGCCAATAGTGGG 60.341 52.381 28.75 19.55 46.09 4.61
2140 2165 2.019249 CCTGACACATGGCCAATAGTG 58.981 52.381 25.77 25.77 37.95 2.74
2141 2166 1.915489 TCCTGACACATGGCCAATAGT 59.085 47.619 10.96 8.50 0.00 2.12
2142 2167 2.715749 TCCTGACACATGGCCAATAG 57.284 50.000 10.96 5.45 0.00 1.73
2143 2168 2.509131 TGATCCTGACACATGGCCAATA 59.491 45.455 10.96 0.00 0.00 1.90
2144 2169 1.285667 TGATCCTGACACATGGCCAAT 59.714 47.619 10.96 0.00 0.00 3.16
2145 2170 0.697658 TGATCCTGACACATGGCCAA 59.302 50.000 10.96 0.00 0.00 4.52
2146 2171 0.921166 ATGATCCTGACACATGGCCA 59.079 50.000 8.56 8.56 0.00 5.36
2147 2172 1.315690 CATGATCCTGACACATGGCC 58.684 55.000 0.00 0.00 38.07 5.36
2148 2173 1.674441 CACATGATCCTGACACATGGC 59.326 52.381 0.00 0.00 43.55 4.40
2149 2174 2.092807 TCCACATGATCCTGACACATGG 60.093 50.000 0.00 2.05 43.55 3.66
2150 2175 3.271055 TCCACATGATCCTGACACATG 57.729 47.619 0.00 0.00 44.42 3.21
2151 2176 4.080186 TCAATCCACATGATCCTGACACAT 60.080 41.667 0.00 0.00 31.61 3.21
2152 2177 3.263937 TCAATCCACATGATCCTGACACA 59.736 43.478 0.00 0.00 31.61 3.72
2153 2178 3.875727 CTCAATCCACATGATCCTGACAC 59.124 47.826 0.00 0.00 31.61 3.67
2154 2179 3.118149 CCTCAATCCACATGATCCTGACA 60.118 47.826 0.00 0.00 31.61 3.58
2155 2180 3.118112 ACCTCAATCCACATGATCCTGAC 60.118 47.826 0.00 0.00 31.61 3.51
2156 2181 3.117745 ACCTCAATCCACATGATCCTGA 58.882 45.455 0.00 0.00 31.61 3.86
2157 2182 3.211865 CACCTCAATCCACATGATCCTG 58.788 50.000 0.00 0.00 31.61 3.86
2158 2183 2.848694 ACACCTCAATCCACATGATCCT 59.151 45.455 0.00 0.00 31.61 3.24
2159 2184 2.947652 CACACCTCAATCCACATGATCC 59.052 50.000 0.00 0.00 31.61 3.36
2160 2185 3.877559 TCACACCTCAATCCACATGATC 58.122 45.455 0.00 0.00 31.61 2.92
2161 2186 4.515028 ATCACACCTCAATCCACATGAT 57.485 40.909 0.00 0.00 34.22 2.45
2162 2187 4.305539 AATCACACCTCAATCCACATGA 57.694 40.909 0.00 0.00 0.00 3.07
2163 2188 4.142315 GGAAATCACACCTCAATCCACATG 60.142 45.833 0.00 0.00 0.00 3.21
2164 2189 4.019174 GGAAATCACACCTCAATCCACAT 58.981 43.478 0.00 0.00 0.00 3.21
2165 2190 3.181435 TGGAAATCACACCTCAATCCACA 60.181 43.478 0.00 0.00 30.90 4.17
2166 2191 3.191371 GTGGAAATCACACCTCAATCCAC 59.809 47.826 6.31 6.31 45.80 4.02
2167 2192 3.420893 GTGGAAATCACACCTCAATCCA 58.579 45.455 0.00 0.00 45.39 3.41
2168 2193 2.420022 CGTGGAAATCACACCTCAATCC 59.580 50.000 0.00 0.00 46.36 3.01
2169 2194 2.420022 CCGTGGAAATCACACCTCAATC 59.580 50.000 0.00 0.00 46.36 2.67
2170 2195 2.436417 CCGTGGAAATCACACCTCAAT 58.564 47.619 0.00 0.00 46.36 2.57
2171 2196 1.544537 CCCGTGGAAATCACACCTCAA 60.545 52.381 0.00 0.00 46.36 3.02
2172 2197 0.036164 CCCGTGGAAATCACACCTCA 59.964 55.000 0.00 0.00 46.36 3.86
2173 2198 1.305930 GCCCGTGGAAATCACACCTC 61.306 60.000 0.00 0.00 46.36 3.85
2174 2199 1.303317 GCCCGTGGAAATCACACCT 60.303 57.895 0.00 0.00 46.36 4.00
2175 2200 1.586154 CTGCCCGTGGAAATCACACC 61.586 60.000 0.00 0.00 46.36 4.16
2176 2201 0.889186 ACTGCCCGTGGAAATCACAC 60.889 55.000 0.00 0.00 46.36 3.82
2177 2202 0.605319 GACTGCCCGTGGAAATCACA 60.605 55.000 0.00 0.00 46.36 3.58
2178 2203 1.305930 GGACTGCCCGTGGAAATCAC 61.306 60.000 0.00 0.00 42.74 3.06
2179 2204 1.002624 GGACTGCCCGTGGAAATCA 60.003 57.895 0.00 0.00 0.00 2.57
2180 2205 1.749258 GGGACTGCCCGTGGAAATC 60.749 63.158 0.00 0.00 46.48 2.17
2181 2206 2.355115 GGGACTGCCCGTGGAAAT 59.645 61.111 0.00 0.00 46.48 2.17
2190 2215 2.434359 GCTACACGTGGGACTGCC 60.434 66.667 21.57 0.00 0.00 4.85
2191 2216 1.004918 AAGCTACACGTGGGACTGC 60.005 57.895 21.57 15.13 0.00 4.40
2192 2217 0.317160 TCAAGCTACACGTGGGACTG 59.683 55.000 21.57 10.21 0.00 3.51
2193 2218 0.603569 CTCAAGCTACACGTGGGACT 59.396 55.000 21.57 10.53 28.01 3.85
2194 2219 0.601558 TCTCAAGCTACACGTGGGAC 59.398 55.000 21.57 8.19 31.73 4.46
2195 2220 0.888619 CTCTCAAGCTACACGTGGGA 59.111 55.000 21.57 6.36 34.60 4.37
2196 2221 0.888619 TCTCTCAAGCTACACGTGGG 59.111 55.000 21.57 13.16 0.00 4.61
2197 2222 2.534298 CATCTCTCAAGCTACACGTGG 58.466 52.381 21.57 3.72 0.00 4.94
2198 2223 2.094494 ACCATCTCTCAAGCTACACGTG 60.094 50.000 15.48 15.48 0.00 4.49
2199 2224 2.164624 GACCATCTCTCAAGCTACACGT 59.835 50.000 0.00 0.00 0.00 4.49
2200 2225 2.164422 TGACCATCTCTCAAGCTACACG 59.836 50.000 0.00 0.00 0.00 4.49
2201 2226 3.876274 TGACCATCTCTCAAGCTACAC 57.124 47.619 0.00 0.00 0.00 2.90
2202 2227 3.431346 GCATGACCATCTCTCAAGCTACA 60.431 47.826 0.00 0.00 31.19 2.74
2203 2228 3.129871 GCATGACCATCTCTCAAGCTAC 58.870 50.000 0.00 0.00 31.19 3.58
2204 2229 3.036819 AGCATGACCATCTCTCAAGCTA 58.963 45.455 0.00 0.00 40.11 3.32
2205 2230 1.838715 AGCATGACCATCTCTCAAGCT 59.161 47.619 0.00 0.00 37.76 3.74
2206 2231 2.158928 AGAGCATGACCATCTCTCAAGC 60.159 50.000 0.00 0.00 32.11 4.01
2207 2232 3.823281 AGAGCATGACCATCTCTCAAG 57.177 47.619 0.00 0.00 32.11 3.02
2208 2233 3.870274 CAAGAGCATGACCATCTCTCAA 58.130 45.455 0.00 0.00 36.27 3.02
2209 2234 2.419713 GCAAGAGCATGACCATCTCTCA 60.420 50.000 0.00 0.00 41.58 3.27
2210 2235 2.211806 GCAAGAGCATGACCATCTCTC 58.788 52.381 0.00 0.00 41.58 3.20
2211 2236 1.472904 CGCAAGAGCATGACCATCTCT 60.473 52.381 0.00 0.00 42.27 3.10
2212 2237 0.935898 CGCAAGAGCATGACCATCTC 59.064 55.000 0.00 0.00 42.27 2.75
2213 2238 0.463295 CCGCAAGAGCATGACCATCT 60.463 55.000 0.00 0.00 42.27 2.90
2214 2239 0.745845 ACCGCAAGAGCATGACCATC 60.746 55.000 0.00 0.00 42.27 3.51
2215 2240 0.745845 GACCGCAAGAGCATGACCAT 60.746 55.000 0.00 0.00 42.27 3.55
2216 2241 1.375908 GACCGCAAGAGCATGACCA 60.376 57.895 0.00 0.00 42.27 4.02
2217 2242 0.674895 AAGACCGCAAGAGCATGACC 60.675 55.000 0.00 0.00 42.27 4.02
2218 2243 0.445436 CAAGACCGCAAGAGCATGAC 59.555 55.000 0.00 0.00 42.27 3.06
2219 2244 1.300971 GCAAGACCGCAAGAGCATGA 61.301 55.000 0.00 0.00 42.27 3.07
2220 2245 1.136147 GCAAGACCGCAAGAGCATG 59.864 57.895 0.00 0.00 42.27 4.06
2221 2246 2.042831 GGCAAGACCGCAAGAGCAT 61.043 57.895 0.00 0.00 42.27 3.79
2222 2247 2.669569 GGCAAGACCGCAAGAGCA 60.670 61.111 0.00 0.00 42.27 4.26
2223 2248 2.669569 TGGCAAGACCGCAAGAGC 60.670 61.111 0.00 0.00 43.94 4.09
2230 2255 1.632046 ATTTACGCGTGGCAAGACCG 61.632 55.000 24.59 1.54 43.94 4.79
2231 2256 0.519961 AATTTACGCGTGGCAAGACC 59.480 50.000 24.59 0.00 39.84 3.85
2232 2257 2.325509 AAATTTACGCGTGGCAAGAC 57.674 45.000 24.59 0.00 0.00 3.01
2233 2258 4.688511 ATAAAATTTACGCGTGGCAAGA 57.311 36.364 24.59 0.00 0.00 3.02
2234 2259 5.755330 AAATAAAATTTACGCGTGGCAAG 57.245 34.783 24.59 0.00 0.00 4.01
2235 2260 6.200286 TCAAAAATAAAATTTACGCGTGGCAA 59.800 30.769 24.59 12.44 0.00 4.52
2236 2261 5.690409 TCAAAAATAAAATTTACGCGTGGCA 59.310 32.000 24.59 5.55 0.00 4.92
2237 2262 6.142122 TCAAAAATAAAATTTACGCGTGGC 57.858 33.333 24.59 0.00 0.00 5.01
2238 2263 8.973619 TTTTCAAAAATAAAATTTACGCGTGG 57.026 26.923 24.59 0.00 0.00 4.94
2239 2264 9.836739 TCTTTTCAAAAATAAAATTTACGCGTG 57.163 25.926 24.59 0.00 0.00 5.34
2254 2279 8.531146 GGATGGAGGATACATTCTTTTCAAAAA 58.469 33.333 0.00 0.00 41.41 1.94
2255 2280 7.895429 AGGATGGAGGATACATTCTTTTCAAAA 59.105 33.333 0.00 0.00 29.87 2.44
2256 2281 7.413446 AGGATGGAGGATACATTCTTTTCAAA 58.587 34.615 0.00 0.00 29.87 2.69
2257 2282 6.973642 AGGATGGAGGATACATTCTTTTCAA 58.026 36.000 0.00 0.00 29.87 2.69
2258 2283 6.388100 AGAGGATGGAGGATACATTCTTTTCA 59.612 38.462 0.00 0.00 34.34 2.69
2259 2284 6.709846 CAGAGGATGGAGGATACATTCTTTTC 59.290 42.308 0.00 0.00 34.34 2.29
2260 2285 6.599445 CAGAGGATGGAGGATACATTCTTTT 58.401 40.000 0.00 0.00 34.34 2.27
2261 2286 5.455899 GCAGAGGATGGAGGATACATTCTTT 60.456 44.000 0.00 0.00 34.34 2.52
2262 2287 4.041444 GCAGAGGATGGAGGATACATTCTT 59.959 45.833 0.00 0.00 34.34 2.52
2263 2288 3.582208 GCAGAGGATGGAGGATACATTCT 59.418 47.826 0.00 0.00 36.88 2.40
2264 2289 3.326006 TGCAGAGGATGGAGGATACATTC 59.674 47.826 0.00 0.00 41.41 2.67
2265 2290 3.321039 TGCAGAGGATGGAGGATACATT 58.679 45.455 0.00 0.00 41.41 2.71
2266 2291 2.981921 TGCAGAGGATGGAGGATACAT 58.018 47.619 0.00 0.00 41.41 2.29
2267 2292 2.477104 TGCAGAGGATGGAGGATACA 57.523 50.000 0.00 0.00 41.41 2.29
2268 2293 3.326006 TCAATGCAGAGGATGGAGGATAC 59.674 47.826 0.00 0.00 30.11 2.24
2269 2294 3.590714 TCAATGCAGAGGATGGAGGATA 58.409 45.455 0.00 0.00 30.11 2.59
2270 2295 2.415624 TCAATGCAGAGGATGGAGGAT 58.584 47.619 0.00 0.00 30.11 3.24
2271 2296 1.883678 TCAATGCAGAGGATGGAGGA 58.116 50.000 0.00 0.00 30.11 3.71
2272 2297 2.885266 CAATCAATGCAGAGGATGGAGG 59.115 50.000 0.00 0.00 30.11 4.30
2273 2298 3.816994 TCAATCAATGCAGAGGATGGAG 58.183 45.455 0.00 0.00 30.11 3.86
2274 2299 3.937778 TCAATCAATGCAGAGGATGGA 57.062 42.857 0.00 0.00 0.00 3.41
2275 2300 4.505313 CATCAATCAATGCAGAGGATGG 57.495 45.455 10.29 3.84 33.29 3.51
2285 2310 2.124122 CGGCATGTGCATCAATCAATG 58.876 47.619 7.36 0.00 44.36 2.82
2286 2311 1.537348 GCGGCATGTGCATCAATCAAT 60.537 47.619 7.36 0.00 44.36 2.57
2287 2312 0.179132 GCGGCATGTGCATCAATCAA 60.179 50.000 7.36 0.00 44.36 2.57
2288 2313 1.313812 TGCGGCATGTGCATCAATCA 61.314 50.000 10.20 0.00 44.36 2.57
2289 2314 1.434287 TGCGGCATGTGCATCAATC 59.566 52.632 10.20 0.00 44.36 2.67
2290 2315 3.605895 TGCGGCATGTGCATCAAT 58.394 50.000 10.20 0.00 44.36 2.57
2320 2345 9.777297 ATGTTTTGACTTTTACTTGGCATATTT 57.223 25.926 0.00 0.00 0.00 1.40
2321 2346 9.423061 GATGTTTTGACTTTTACTTGGCATATT 57.577 29.630 0.00 0.00 0.00 1.28
2322 2347 7.754924 CGATGTTTTGACTTTTACTTGGCATAT 59.245 33.333 0.00 0.00 0.00 1.78
2323 2348 7.041030 TCGATGTTTTGACTTTTACTTGGCATA 60.041 33.333 0.00 0.00 0.00 3.14
2324 2349 5.920273 CGATGTTTTGACTTTTACTTGGCAT 59.080 36.000 0.00 0.00 0.00 4.40
2325 2350 5.066634 TCGATGTTTTGACTTTTACTTGGCA 59.933 36.000 0.00 0.00 0.00 4.92
2326 2351 5.398416 GTCGATGTTTTGACTTTTACTTGGC 59.602 40.000 0.00 0.00 33.98 4.52
2327 2352 6.491394 TGTCGATGTTTTGACTTTTACTTGG 58.509 36.000 0.00 0.00 37.20 3.61
2328 2353 8.471457 CAATGTCGATGTTTTGACTTTTACTTG 58.529 33.333 0.00 0.00 37.20 3.16
2329 2354 8.402472 TCAATGTCGATGTTTTGACTTTTACTT 58.598 29.630 0.00 0.00 37.20 2.24
2330 2355 7.925993 TCAATGTCGATGTTTTGACTTTTACT 58.074 30.769 0.00 0.00 37.20 2.24
2331 2356 8.469125 GTTCAATGTCGATGTTTTGACTTTTAC 58.531 33.333 0.00 0.00 37.20 2.01
2332 2357 8.184848 TGTTCAATGTCGATGTTTTGACTTTTA 58.815 29.630 0.00 0.00 37.20 1.52
2333 2358 7.032580 TGTTCAATGTCGATGTTTTGACTTTT 58.967 30.769 0.00 0.00 37.20 2.27
2334 2359 6.559810 TGTTCAATGTCGATGTTTTGACTTT 58.440 32.000 0.00 0.00 37.20 2.66
2335 2360 6.130298 TGTTCAATGTCGATGTTTTGACTT 57.870 33.333 0.00 0.00 37.20 3.01
2336 2361 5.749596 TGTTCAATGTCGATGTTTTGACT 57.250 34.783 0.00 0.00 37.20 3.41
2337 2362 6.804534 TTTGTTCAATGTCGATGTTTTGAC 57.195 33.333 0.00 0.00 36.87 3.18
2338 2363 7.042858 CCAATTTGTTCAATGTCGATGTTTTGA 60.043 33.333 0.00 0.00 0.00 2.69
2339 2364 7.064674 CCAATTTGTTCAATGTCGATGTTTTG 58.935 34.615 0.00 0.00 0.00 2.44
2340 2365 6.292811 GCCAATTTGTTCAATGTCGATGTTTT 60.293 34.615 0.00 0.00 0.00 2.43
2341 2366 5.177327 GCCAATTTGTTCAATGTCGATGTTT 59.823 36.000 0.00 0.00 0.00 2.83
2342 2367 4.685628 GCCAATTTGTTCAATGTCGATGTT 59.314 37.500 0.00 0.00 0.00 2.71
2343 2368 4.236935 GCCAATTTGTTCAATGTCGATGT 58.763 39.130 0.00 0.00 0.00 3.06
2344 2369 3.301379 CGCCAATTTGTTCAATGTCGATG 59.699 43.478 0.00 0.00 0.00 3.84
2345 2370 3.190327 TCGCCAATTTGTTCAATGTCGAT 59.810 39.130 0.00 0.00 0.00 3.59
2346 2371 2.550180 TCGCCAATTTGTTCAATGTCGA 59.450 40.909 0.00 0.00 0.00 4.20
2347 2372 2.927429 TCGCCAATTTGTTCAATGTCG 58.073 42.857 0.00 0.00 0.00 4.35
2348 2373 4.047822 TGTTCGCCAATTTGTTCAATGTC 58.952 39.130 0.00 0.00 0.00 3.06
2349 2374 4.052159 TGTTCGCCAATTTGTTCAATGT 57.948 36.364 0.00 0.00 0.00 2.71
2350 2375 5.062058 GGTATGTTCGCCAATTTGTTCAATG 59.938 40.000 0.00 0.00 0.00 2.82
2351 2376 5.167845 GGTATGTTCGCCAATTTGTTCAAT 58.832 37.500 0.00 0.00 0.00 2.57
2352 2377 4.551388 GGTATGTTCGCCAATTTGTTCAA 58.449 39.130 0.00 0.00 0.00 2.69
2353 2378 3.057174 GGGTATGTTCGCCAATTTGTTCA 60.057 43.478 0.00 0.00 0.00 3.18
2354 2379 3.057174 TGGGTATGTTCGCCAATTTGTTC 60.057 43.478 0.00 0.00 0.00 3.18
2355 2380 2.894126 TGGGTATGTTCGCCAATTTGTT 59.106 40.909 0.00 0.00 0.00 2.83
2356 2381 2.520069 TGGGTATGTTCGCCAATTTGT 58.480 42.857 0.00 0.00 0.00 2.83
2357 2382 3.799281 ATGGGTATGTTCGCCAATTTG 57.201 42.857 0.00 0.00 0.00 2.32
2358 2383 5.833131 AGATAATGGGTATGTTCGCCAATTT 59.167 36.000 0.00 0.00 0.00 1.82
2359 2384 5.385198 AGATAATGGGTATGTTCGCCAATT 58.615 37.500 0.00 0.00 0.00 2.32
2360 2385 4.985538 AGATAATGGGTATGTTCGCCAAT 58.014 39.130 0.00 0.00 0.00 3.16
2361 2386 4.385825 GAGATAATGGGTATGTTCGCCAA 58.614 43.478 0.00 0.00 0.00 4.52
2362 2387 3.244422 GGAGATAATGGGTATGTTCGCCA 60.244 47.826 0.00 0.00 0.00 5.69
2363 2388 3.244422 TGGAGATAATGGGTATGTTCGCC 60.244 47.826 0.00 0.00 0.00 5.54
2364 2389 4.002906 TGGAGATAATGGGTATGTTCGC 57.997 45.455 0.00 0.00 0.00 4.70
2365 2390 6.935741 TTTTGGAGATAATGGGTATGTTCG 57.064 37.500 0.00 0.00 0.00 3.95
2366 2391 8.360390 GGAATTTTGGAGATAATGGGTATGTTC 58.640 37.037 0.00 0.00 0.00 3.18
2367 2392 7.843760 TGGAATTTTGGAGATAATGGGTATGTT 59.156 33.333 0.00 0.00 0.00 2.71
2368 2393 7.287696 GTGGAATTTTGGAGATAATGGGTATGT 59.712 37.037 0.00 0.00 0.00 2.29
2369 2394 7.255942 GGTGGAATTTTGGAGATAATGGGTATG 60.256 40.741 0.00 0.00 0.00 2.39
2370 2395 6.782494 GGTGGAATTTTGGAGATAATGGGTAT 59.218 38.462 0.00 0.00 0.00 2.73
2371 2396 6.133356 GGTGGAATTTTGGAGATAATGGGTA 58.867 40.000 0.00 0.00 0.00 3.69
2372 2397 4.962362 GGTGGAATTTTGGAGATAATGGGT 59.038 41.667 0.00 0.00 0.00 4.51
2373 2398 4.037923 CGGTGGAATTTTGGAGATAATGGG 59.962 45.833 0.00 0.00 0.00 4.00
2374 2399 4.499696 GCGGTGGAATTTTGGAGATAATGG 60.500 45.833 0.00 0.00 0.00 3.16
2375 2400 4.097741 TGCGGTGGAATTTTGGAGATAATG 59.902 41.667 0.00 0.00 0.00 1.90
2376 2401 4.277476 TGCGGTGGAATTTTGGAGATAAT 58.723 39.130 0.00 0.00 0.00 1.28
2377 2402 3.691575 TGCGGTGGAATTTTGGAGATAA 58.308 40.909 0.00 0.00 0.00 1.75
2378 2403 3.358111 TGCGGTGGAATTTTGGAGATA 57.642 42.857 0.00 0.00 0.00 1.98
2379 2404 2.214376 TGCGGTGGAATTTTGGAGAT 57.786 45.000 0.00 0.00 0.00 2.75
2380 2405 1.988293 TTGCGGTGGAATTTTGGAGA 58.012 45.000 0.00 0.00 0.00 3.71
2381 2406 2.403259 GTTTGCGGTGGAATTTTGGAG 58.597 47.619 0.00 0.00 0.00 3.86
2382 2407 1.069358 GGTTTGCGGTGGAATTTTGGA 59.931 47.619 0.00 0.00 0.00 3.53
2383 2408 1.507562 GGTTTGCGGTGGAATTTTGG 58.492 50.000 0.00 0.00 0.00 3.28
2384 2409 1.507562 GGGTTTGCGGTGGAATTTTG 58.492 50.000 0.00 0.00 0.00 2.44
2385 2410 0.032815 CGGGTTTGCGGTGGAATTTT 59.967 50.000 0.00 0.00 0.00 1.82
2386 2411 0.824182 TCGGGTTTGCGGTGGAATTT 60.824 50.000 0.00 0.00 0.00 1.82
2387 2412 0.610785 ATCGGGTTTGCGGTGGAATT 60.611 50.000 0.00 0.00 0.00 2.17
2388 2413 1.001393 ATCGGGTTTGCGGTGGAAT 60.001 52.632 0.00 0.00 0.00 3.01
2389 2414 1.969064 CATCGGGTTTGCGGTGGAA 60.969 57.895 0.00 0.00 0.00 3.53
2390 2415 2.359354 CATCGGGTTTGCGGTGGA 60.359 61.111 0.00 0.00 0.00 4.02
2391 2416 2.359354 TCATCGGGTTTGCGGTGG 60.359 61.111 0.00 0.00 0.00 4.61
2392 2417 1.305219 ATGTCATCGGGTTTGCGGTG 61.305 55.000 0.00 0.00 0.00 4.94
2393 2418 1.002624 ATGTCATCGGGTTTGCGGT 60.003 52.632 0.00 0.00 0.00 5.68
2394 2419 1.305219 ACATGTCATCGGGTTTGCGG 61.305 55.000 0.00 0.00 0.00 5.69
2395 2420 0.179192 CACATGTCATCGGGTTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
2396 2421 1.164411 TCACATGTCATCGGGTTTGC 58.836 50.000 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.