Multiple sequence alignment - TraesCS1A01G180700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G180700 chr1A 100.000 2724 0 0 1 2724 326218907 326216184 0.000000e+00 5031.0
1 TraesCS1A01G180700 chr1A 95.652 138 6 0 1651 1788 515766159 515766022 3.530000e-54 222.0
2 TraesCS1A01G180700 chr1A 93.243 148 10 0 1643 1790 438321788 438321641 4.570000e-53 219.0
3 TraesCS1A01G180700 chr1A 78.531 177 32 6 2425 2597 441844687 441844513 7.970000e-21 111.0
4 TraesCS1A01G180700 chr1D 91.626 824 25 9 814 1593 254616251 254615428 0.000000e+00 1099.0
5 TraesCS1A01G180700 chr1D 83.586 396 42 8 2314 2700 254612937 254612556 1.550000e-92 350.0
6 TraesCS1A01G180700 chr1D 95.939 197 5 2 1 196 254618068 254617874 1.570000e-82 316.0
7 TraesCS1A01G180700 chr1D 85.561 187 18 4 11 196 254621722 254621544 1.290000e-43 187.0
8 TraesCS1A01G180700 chr1D 89.600 125 5 4 377 501 254617883 254617767 4.700000e-33 152.0
9 TraesCS1A01G180700 chr1D 85.393 89 12 1 627 715 254616340 254616253 1.040000e-14 91.6
10 TraesCS1A01G180700 chr1B 92.867 729 19 7 888 1593 358018742 358019460 0.000000e+00 1027.0
11 TraesCS1A01G180700 chr1B 83.540 808 116 10 1929 2723 358019538 358020341 0.000000e+00 739.0
12 TraesCS1A01G180700 chr1B 97.949 195 4 0 1 195 358018392 358018586 3.360000e-89 339.0
13 TraesCS1A01G180700 chr2B 99.315 146 1 0 196 341 697666966 697667111 5.780000e-67 265.0
14 TraesCS1A01G180700 chr3A 92.818 181 11 2 196 376 572042020 572042198 7.480000e-66 261.0
15 TraesCS1A01G180700 chr3A 96.124 129 5 0 1654 1782 564914732 564914604 7.640000e-51 211.0
16 TraesCS1A01G180700 chr3A 99.065 107 1 0 196 302 162716953 162717059 2.770000e-45 193.0
17 TraesCS1A01G180700 chr5B 90.860 186 14 2 196 379 369724561 369724745 2.090000e-61 246.0
18 TraesCS1A01G180700 chr5B 97.849 93 2 0 196 288 622583071 622582979 7.810000e-36 161.0
19 TraesCS1A01G180700 chr5B 95.775 71 3 0 306 376 622582688 622582618 6.160000e-22 115.0
20 TraesCS1A01G180700 chr5B 92.537 67 5 0 1587 1653 15222133 15222199 2.230000e-16 97.1
21 TraesCS1A01G180700 chr4A 89.130 184 15 3 196 379 117331600 117331422 9.820000e-55 224.0
22 TraesCS1A01G180700 chr4A 94.776 134 7 0 1653 1786 14019667 14019800 2.750000e-50 209.0
23 TraesCS1A01G180700 chr4A 95.122 82 4 0 196 277 742429028 742429109 2.200000e-26 130.0
24 TraesCS1A01G180700 chr7A 96.296 135 5 0 1651 1785 138526449 138526583 3.530000e-54 222.0
25 TraesCS1A01G180700 chr7A 94.737 133 7 0 1652 1784 660452111 660451979 9.890000e-50 207.0
26 TraesCS1A01G180700 chr7B 96.269 134 5 0 1651 1784 650241875 650241742 1.270000e-53 220.0
27 TraesCS1A01G180700 chr7B 96.923 65 1 1 197 261 49219886 49219949 1.030000e-19 108.0
28 TraesCS1A01G180700 chr7B 97.143 35 1 0 342 376 49220188 49220222 2.930000e-05 60.2
29 TraesCS1A01G180700 chr6A 96.154 130 5 0 1653 1782 132950181 132950310 2.120000e-51 213.0
30 TraesCS1A01G180700 chr6B 94.776 134 7 0 1651 1784 241540613 241540480 2.750000e-50 209.0
31 TraesCS1A01G180700 chr3B 94.382 89 5 0 199 287 729947729 729947817 1.320000e-28 137.0
32 TraesCS1A01G180700 chr7D 93.846 65 4 0 1588 1652 197879746 197879810 6.210000e-17 99.0
33 TraesCS1A01G180700 chr7D 93.750 64 4 0 1587 1650 596879422 596879359 2.230000e-16 97.1
34 TraesCS1A01G180700 chr5A 96.491 57 2 0 1597 1653 476843065 476843009 8.030000e-16 95.3
35 TraesCS1A01G180700 chr5A 96.491 57 2 0 1597 1653 671556206 671556150 8.030000e-16 95.3
36 TraesCS1A01G180700 chr4B 96.491 57 2 0 1597 1653 387788050 387787994 8.030000e-16 95.3
37 TraesCS1A01G180700 chr5D 92.308 65 5 0 1588 1652 94027844 94027780 2.890000e-15 93.5
38 TraesCS1A01G180700 chr2A 92.308 65 5 0 1589 1653 448936609 448936673 2.890000e-15 93.5
39 TraesCS1A01G180700 chr2A 95.000 60 1 2 1596 1653 642916167 642916108 2.890000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G180700 chr1A 326216184 326218907 2723 True 5031.000000 5031 100.0000 1 2724 1 chr1A.!!$R1 2723
1 TraesCS1A01G180700 chr1D 254612556 254621722 9166 True 365.933333 1099 88.6175 1 2700 6 chr1D.!!$R1 2699
2 TraesCS1A01G180700 chr1B 358018392 358020341 1949 False 701.666667 1027 91.4520 1 2723 3 chr1B.!!$F1 2722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 3909 0.034756 AGTTACACGCTGACATGGCA 59.965 50.0 0.00 0.00 0.00 4.92 F
341 3997 0.036483 TAACGAAGGGCCCCGTAAAC 60.036 55.0 24.01 6.91 38.13 2.01 F
360 4016 0.036765 CTGCCTGTAACAAGCCCGTA 60.037 55.0 0.00 0.00 0.00 4.02 F
1660 6708 0.107654 GCAATCCAGTTAGGGAGCGT 60.108 55.0 0.00 0.00 41.08 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 6689 0.107654 ACGCTCCCTAACTGGATTGC 60.108 55.0 0.0 0.0 38.35 3.56 R
1666 6714 0.119155 TGACTTGGGAGTGGAGGGAT 59.881 55.0 0.0 0.0 35.88 3.85 R
1670 6718 0.248843 GAGCTGACTTGGGAGTGGAG 59.751 60.0 0.0 0.0 35.88 3.86 R
2474 9724 0.389166 GAGACTGACGCCCTGTTCAG 60.389 60.0 0.0 0.0 34.15 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 3829 4.641989 CAGCCTTATTACAAGTTGATGCCT 59.358 41.667 10.54 0.00 0.00 4.75
195 3851 7.390440 TGCCTGGATAACATACACTATTATTGC 59.610 37.037 0.00 0.00 0.00 3.56
196 3852 7.390440 GCCTGGATAACATACACTATTATTGCA 59.610 37.037 0.00 0.00 0.00 4.08
197 3853 8.939929 CCTGGATAACATACACTATTATTGCAG 58.060 37.037 0.00 0.00 0.00 4.41
198 3854 9.494271 CTGGATAACATACACTATTATTGCAGT 57.506 33.333 0.00 0.00 0.00 4.40
204 3860 8.908786 ACATACACTATTATTGCAGTAATGCT 57.091 30.769 21.10 6.16 35.49 3.79
205 3861 9.996554 ACATACACTATTATTGCAGTAATGCTA 57.003 29.630 21.10 9.45 35.49 3.49
208 3864 8.594881 ACACTATTATTGCAGTAATGCTAGAC 57.405 34.615 21.10 0.00 35.49 2.59
209 3865 7.382488 ACACTATTATTGCAGTAATGCTAGACG 59.618 37.037 21.10 11.40 35.49 4.18
210 3866 7.382488 CACTATTATTGCAGTAATGCTAGACGT 59.618 37.037 21.10 0.00 35.49 4.34
211 3867 8.573885 ACTATTATTGCAGTAATGCTAGACGTA 58.426 33.333 21.10 1.76 35.49 3.57
212 3868 7.639162 ATTATTGCAGTAATGCTAGACGTAC 57.361 36.000 17.03 0.00 35.49 3.67
213 3869 4.443913 TTGCAGTAATGCTAGACGTACA 57.556 40.909 17.03 0.00 35.49 2.90
214 3870 4.028852 TGCAGTAATGCTAGACGTACAG 57.971 45.455 17.03 0.00 35.49 2.74
215 3871 3.181490 TGCAGTAATGCTAGACGTACAGG 60.181 47.826 17.03 0.00 35.49 4.00
216 3872 3.372954 CAGTAATGCTAGACGTACAGGC 58.627 50.000 0.00 0.00 0.00 4.85
217 3873 3.021695 AGTAATGCTAGACGTACAGGCA 58.978 45.455 0.00 7.27 37.32 4.75
218 3874 2.295253 AATGCTAGACGTACAGGCAC 57.705 50.000 0.00 0.00 35.72 5.01
219 3875 1.475403 ATGCTAGACGTACAGGCACT 58.525 50.000 0.00 0.00 43.88 4.40
220 3876 1.254026 TGCTAGACGTACAGGCACTT 58.746 50.000 0.00 0.00 34.60 3.16
221 3877 2.439409 TGCTAGACGTACAGGCACTTA 58.561 47.619 0.00 0.00 34.60 2.24
222 3878 2.163010 TGCTAGACGTACAGGCACTTAC 59.837 50.000 0.00 0.00 34.60 2.34
223 3879 2.163010 GCTAGACGTACAGGCACTTACA 59.837 50.000 0.00 0.00 34.60 2.41
224 3880 3.731264 GCTAGACGTACAGGCACTTACAG 60.731 52.174 0.00 0.00 34.60 2.74
225 3881 1.544691 AGACGTACAGGCACTTACAGG 59.455 52.381 0.00 0.00 34.60 4.00
226 3882 0.037605 ACGTACAGGCACTTACAGGC 60.038 55.000 0.00 0.00 34.60 4.85
227 3883 0.246635 CGTACAGGCACTTACAGGCT 59.753 55.000 0.00 0.00 43.32 4.58
232 3888 2.887151 AGGCACTTACAGGCTGAATT 57.113 45.000 23.66 0.55 40.72 2.17
233 3889 3.160679 AGGCACTTACAGGCTGAATTT 57.839 42.857 23.66 0.12 40.72 1.82
234 3890 4.301072 AGGCACTTACAGGCTGAATTTA 57.699 40.909 23.66 0.00 40.72 1.40
235 3891 4.265073 AGGCACTTACAGGCTGAATTTAG 58.735 43.478 23.66 12.14 40.72 1.85
236 3892 4.010349 GGCACTTACAGGCTGAATTTAGT 58.990 43.478 23.66 12.75 0.00 2.24
237 3893 4.459337 GGCACTTACAGGCTGAATTTAGTT 59.541 41.667 23.66 0.00 0.00 2.24
238 3894 5.646360 GGCACTTACAGGCTGAATTTAGTTA 59.354 40.000 23.66 0.00 0.00 2.24
239 3895 6.403309 GGCACTTACAGGCTGAATTTAGTTAC 60.403 42.308 23.66 9.93 0.00 2.50
240 3896 6.148811 GCACTTACAGGCTGAATTTAGTTACA 59.851 38.462 23.66 0.00 0.00 2.41
241 3897 7.519002 CACTTACAGGCTGAATTTAGTTACAC 58.481 38.462 23.66 0.00 0.00 2.90
242 3898 6.367969 ACTTACAGGCTGAATTTAGTTACACG 59.632 38.462 23.66 0.00 0.00 4.49
243 3899 3.435671 ACAGGCTGAATTTAGTTACACGC 59.564 43.478 23.66 0.00 0.00 5.34
244 3900 3.684788 CAGGCTGAATTTAGTTACACGCT 59.315 43.478 9.42 0.00 0.00 5.07
245 3901 3.684788 AGGCTGAATTTAGTTACACGCTG 59.315 43.478 0.00 0.00 0.00 5.18
246 3902 3.682858 GGCTGAATTTAGTTACACGCTGA 59.317 43.478 0.00 0.00 0.00 4.26
247 3903 4.435651 GGCTGAATTTAGTTACACGCTGAC 60.436 45.833 0.00 0.00 0.00 3.51
248 3904 4.151689 GCTGAATTTAGTTACACGCTGACA 59.848 41.667 0.00 0.00 0.00 3.58
249 3905 5.163854 GCTGAATTTAGTTACACGCTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
250 3906 6.164408 TGAATTTAGTTACACGCTGACATG 57.836 37.500 0.00 0.00 0.00 3.21
251 3907 5.121611 TGAATTTAGTTACACGCTGACATGG 59.878 40.000 0.00 0.00 0.00 3.66
252 3908 2.004583 TAGTTACACGCTGACATGGC 57.995 50.000 0.00 0.00 0.00 4.40
253 3909 0.034756 AGTTACACGCTGACATGGCA 59.965 50.000 0.00 0.00 0.00 4.92
254 3910 0.871722 GTTACACGCTGACATGGCAA 59.128 50.000 1.11 0.00 0.00 4.52
255 3911 1.265635 GTTACACGCTGACATGGCAAA 59.734 47.619 1.11 0.00 0.00 3.68
256 3912 1.598882 TACACGCTGACATGGCAAAA 58.401 45.000 1.11 0.00 0.00 2.44
257 3913 0.961019 ACACGCTGACATGGCAAAAT 59.039 45.000 1.11 0.00 0.00 1.82
258 3914 1.336148 ACACGCTGACATGGCAAAATG 60.336 47.619 1.11 3.20 0.00 2.32
259 3915 0.244450 ACGCTGACATGGCAAAATGG 59.756 50.000 1.11 0.00 31.46 3.16
260 3916 0.458889 CGCTGACATGGCAAAATGGG 60.459 55.000 1.11 0.00 31.46 4.00
261 3917 0.896923 GCTGACATGGCAAAATGGGA 59.103 50.000 1.11 0.00 31.46 4.37
262 3918 1.483415 GCTGACATGGCAAAATGGGAT 59.517 47.619 1.11 0.00 31.46 3.85
263 3919 2.093341 GCTGACATGGCAAAATGGGATT 60.093 45.455 1.11 0.00 31.46 3.01
264 3920 3.527533 CTGACATGGCAAAATGGGATTG 58.472 45.455 1.11 0.00 31.46 2.67
265 3921 2.236644 TGACATGGCAAAATGGGATTGG 59.763 45.455 0.00 0.00 31.46 3.16
266 3922 2.500910 GACATGGCAAAATGGGATTGGA 59.499 45.455 0.00 0.00 31.46 3.53
267 3923 2.911636 ACATGGCAAAATGGGATTGGAA 59.088 40.909 0.00 0.00 31.46 3.53
268 3924 3.330110 ACATGGCAAAATGGGATTGGAAA 59.670 39.130 0.00 0.00 31.46 3.13
269 3925 3.699411 TGGCAAAATGGGATTGGAAAG 57.301 42.857 0.00 0.00 0.00 2.62
270 3926 3.246301 TGGCAAAATGGGATTGGAAAGA 58.754 40.909 0.00 0.00 0.00 2.52
271 3927 3.649981 TGGCAAAATGGGATTGGAAAGAA 59.350 39.130 0.00 0.00 0.00 2.52
272 3928 4.256110 GGCAAAATGGGATTGGAAAGAAG 58.744 43.478 0.00 0.00 0.00 2.85
273 3929 4.256110 GCAAAATGGGATTGGAAAGAAGG 58.744 43.478 0.00 0.00 0.00 3.46
274 3930 4.835678 CAAAATGGGATTGGAAAGAAGGG 58.164 43.478 0.00 0.00 0.00 3.95
275 3931 4.418395 AAATGGGATTGGAAAGAAGGGA 57.582 40.909 0.00 0.00 0.00 4.20
276 3932 3.677156 ATGGGATTGGAAAGAAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
277 3933 2.358258 TGGGATTGGAAAGAAGGGAGT 58.642 47.619 0.00 0.00 0.00 3.85
278 3934 2.041620 TGGGATTGGAAAGAAGGGAGTG 59.958 50.000 0.00 0.00 0.00 3.51
279 3935 2.308866 GGGATTGGAAAGAAGGGAGTGA 59.691 50.000 0.00 0.00 0.00 3.41
280 3936 3.615155 GGATTGGAAAGAAGGGAGTGAG 58.385 50.000 0.00 0.00 0.00 3.51
281 3937 3.615155 GATTGGAAAGAAGGGAGTGAGG 58.385 50.000 0.00 0.00 0.00 3.86
282 3938 0.693049 TGGAAAGAAGGGAGTGAGGC 59.307 55.000 0.00 0.00 0.00 4.70
283 3939 0.391793 GGAAAGAAGGGAGTGAGGCG 60.392 60.000 0.00 0.00 0.00 5.52
284 3940 0.391793 GAAAGAAGGGAGTGAGGCGG 60.392 60.000 0.00 0.00 0.00 6.13
285 3941 1.842381 AAAGAAGGGAGTGAGGCGGG 61.842 60.000 0.00 0.00 0.00 6.13
286 3942 4.475135 GAAGGGAGTGAGGCGGGC 62.475 72.222 0.00 0.00 0.00 6.13
303 3959 4.564110 CCGCCCCGGGGAGAAATC 62.564 72.222 44.86 23.19 44.15 2.17
304 3960 3.792736 CGCCCCGGGGAGAAATCA 61.793 66.667 44.86 0.00 37.24 2.57
305 3961 2.193248 GCCCCGGGGAGAAATCAG 59.807 66.667 44.86 14.03 37.50 2.90
306 3962 2.919043 CCCCGGGGAGAAATCAGG 59.081 66.667 38.41 1.75 37.50 3.86
307 3963 2.757124 CCCCGGGGAGAAATCAGGG 61.757 68.421 38.41 1.08 37.50 4.45
308 3964 2.757124 CCCGGGGAGAAATCAGGGG 61.757 68.421 14.71 0.00 35.36 4.79
309 3965 2.757124 CCGGGGAGAAATCAGGGGG 61.757 68.421 0.00 0.00 0.00 5.40
327 3983 3.945981 GGGGGCAAAGAAATTTAACGA 57.054 42.857 0.00 0.00 0.00 3.85
328 3984 4.260139 GGGGGCAAAGAAATTTAACGAA 57.740 40.909 0.00 0.00 0.00 3.85
329 3985 4.242475 GGGGGCAAAGAAATTTAACGAAG 58.758 43.478 0.00 0.00 0.00 3.79
330 3986 4.242475 GGGGCAAAGAAATTTAACGAAGG 58.758 43.478 0.00 0.00 0.00 3.46
331 3987 4.242475 GGGCAAAGAAATTTAACGAAGGG 58.758 43.478 0.00 0.00 0.00 3.95
332 3988 3.678072 GGCAAAGAAATTTAACGAAGGGC 59.322 43.478 0.00 0.00 0.00 5.19
333 3989 3.678072 GCAAAGAAATTTAACGAAGGGCC 59.322 43.478 0.00 0.00 0.00 5.80
334 3990 4.242475 CAAAGAAATTTAACGAAGGGCCC 58.758 43.478 16.46 16.46 0.00 5.80
335 3991 2.453521 AGAAATTTAACGAAGGGCCCC 58.546 47.619 21.43 2.17 0.00 5.80
336 3992 1.133598 GAAATTTAACGAAGGGCCCCG 59.866 52.381 21.43 19.31 0.00 5.73
337 3993 0.038599 AATTTAACGAAGGGCCCCGT 59.961 50.000 21.43 20.09 41.14 5.28
338 3994 0.911053 ATTTAACGAAGGGCCCCGTA 59.089 50.000 24.01 11.14 38.13 4.02
339 3995 0.689623 TTTAACGAAGGGCCCCGTAA 59.310 50.000 24.01 14.12 38.13 3.18
340 3996 0.689623 TTAACGAAGGGCCCCGTAAA 59.310 50.000 24.01 13.88 38.13 2.01
341 3997 0.036483 TAACGAAGGGCCCCGTAAAC 60.036 55.000 24.01 6.91 38.13 2.01
342 3998 1.771783 AACGAAGGGCCCCGTAAACT 61.772 55.000 24.01 7.95 38.13 2.66
343 3999 1.743995 CGAAGGGCCCCGTAAACTG 60.744 63.158 21.43 0.00 0.00 3.16
344 4000 2.035155 AAGGGCCCCGTAAACTGC 59.965 61.111 21.43 0.00 0.00 4.40
345 4001 3.578968 AAGGGCCCCGTAAACTGCC 62.579 63.158 21.43 0.00 43.26 4.85
346 4002 4.043100 GGGCCCCGTAAACTGCCT 62.043 66.667 12.23 0.00 43.50 4.75
347 4003 2.750237 GGCCCCGTAAACTGCCTG 60.750 66.667 0.00 0.00 40.77 4.85
348 4004 2.033602 GCCCCGTAAACTGCCTGT 59.966 61.111 0.00 0.00 0.00 4.00
349 4005 1.297364 GCCCCGTAAACTGCCTGTA 59.703 57.895 0.00 0.00 0.00 2.74
350 4006 0.321830 GCCCCGTAAACTGCCTGTAA 60.322 55.000 0.00 0.00 0.00 2.41
351 4007 1.445871 CCCCGTAAACTGCCTGTAAC 58.554 55.000 0.00 0.00 0.00 2.50
352 4008 1.270947 CCCCGTAAACTGCCTGTAACA 60.271 52.381 0.00 0.00 0.00 2.41
353 4009 2.496111 CCCGTAAACTGCCTGTAACAA 58.504 47.619 0.00 0.00 0.00 2.83
354 4010 2.482721 CCCGTAAACTGCCTGTAACAAG 59.517 50.000 0.00 0.00 0.00 3.16
355 4011 2.095919 CCGTAAACTGCCTGTAACAAGC 60.096 50.000 0.00 0.00 0.00 4.01
356 4012 2.095919 CGTAAACTGCCTGTAACAAGCC 60.096 50.000 0.00 0.00 0.00 4.35
357 4013 1.328279 AAACTGCCTGTAACAAGCCC 58.672 50.000 0.00 0.00 0.00 5.19
358 4014 0.889186 AACTGCCTGTAACAAGCCCG 60.889 55.000 0.00 0.00 0.00 6.13
359 4015 1.302511 CTGCCTGTAACAAGCCCGT 60.303 57.895 0.00 0.00 0.00 5.28
360 4016 0.036765 CTGCCTGTAACAAGCCCGTA 60.037 55.000 0.00 0.00 0.00 4.02
361 4017 0.616371 TGCCTGTAACAAGCCCGTAT 59.384 50.000 0.00 0.00 0.00 3.06
362 4018 1.014352 GCCTGTAACAAGCCCGTATG 58.986 55.000 0.00 0.00 0.00 2.39
363 4019 1.677820 GCCTGTAACAAGCCCGTATGT 60.678 52.381 0.00 0.00 0.00 2.29
364 4020 2.277084 CCTGTAACAAGCCCGTATGTC 58.723 52.381 0.00 0.00 0.00 3.06
365 4021 2.093658 CCTGTAACAAGCCCGTATGTCT 60.094 50.000 0.00 0.00 0.00 3.41
366 4022 3.131577 CCTGTAACAAGCCCGTATGTCTA 59.868 47.826 0.00 0.00 0.00 2.59
367 4023 4.360563 CTGTAACAAGCCCGTATGTCTAG 58.639 47.826 0.00 0.00 0.00 2.43
368 4024 2.981859 AACAAGCCCGTATGTCTAGG 57.018 50.000 0.00 0.00 0.00 3.02
369 4025 2.154567 ACAAGCCCGTATGTCTAGGA 57.845 50.000 0.00 0.00 0.00 2.94
370 4026 2.679082 ACAAGCCCGTATGTCTAGGAT 58.321 47.619 0.00 0.00 0.00 3.24
371 4027 3.039011 ACAAGCCCGTATGTCTAGGATT 58.961 45.455 0.00 0.00 0.00 3.01
372 4028 4.220724 ACAAGCCCGTATGTCTAGGATTA 58.779 43.478 0.00 0.00 0.00 1.75
373 4029 4.838986 ACAAGCCCGTATGTCTAGGATTAT 59.161 41.667 0.00 0.00 0.00 1.28
374 4030 5.307196 ACAAGCCCGTATGTCTAGGATTATT 59.693 40.000 0.00 0.00 0.00 1.40
375 4031 5.407407 AGCCCGTATGTCTAGGATTATTG 57.593 43.478 0.00 0.00 0.00 1.90
376 4032 3.933332 GCCCGTATGTCTAGGATTATTGC 59.067 47.826 0.00 0.00 0.00 3.56
377 4033 4.322801 GCCCGTATGTCTAGGATTATTGCT 60.323 45.833 0.00 0.00 0.00 3.91
378 4034 5.105473 GCCCGTATGTCTAGGATTATTGCTA 60.105 44.000 0.00 0.00 0.00 3.49
379 4035 6.407074 GCCCGTATGTCTAGGATTATTGCTAT 60.407 42.308 0.00 0.00 0.00 2.97
380 4036 7.556844 CCCGTATGTCTAGGATTATTGCTATT 58.443 38.462 0.00 0.00 0.00 1.73
392 4048 9.672673 AGGATTATTGCTATTATTGCTAACGAT 57.327 29.630 0.06 0.00 0.00 3.73
464 4132 3.790416 TTGCCGCAGCTTTCCACCT 62.790 57.895 0.00 0.00 40.80 4.00
465 4133 2.046314 GCCGCAGCTTTCCACCTA 60.046 61.111 0.00 0.00 35.50 3.08
468 4136 1.017387 CCGCAGCTTTCCACCTATTC 58.983 55.000 0.00 0.00 0.00 1.75
471 4139 2.014068 GCAGCTTTCCACCTATTCGCT 61.014 52.381 0.00 0.00 0.00 4.93
501 4175 7.984050 TCAGAATGTCTGCTTATCTTCTTTAGG 59.016 37.037 0.17 0.00 43.95 2.69
503 4177 4.770795 TGTCTGCTTATCTTCTTTAGGCC 58.229 43.478 0.00 0.00 0.00 5.19
504 4178 4.225042 TGTCTGCTTATCTTCTTTAGGCCA 59.775 41.667 5.01 0.00 0.00 5.36
505 4179 5.186198 GTCTGCTTATCTTCTTTAGGCCAA 58.814 41.667 5.01 0.00 0.00 4.52
506 4180 5.065346 GTCTGCTTATCTTCTTTAGGCCAAC 59.935 44.000 5.01 0.00 0.00 3.77
507 4181 5.045578 TCTGCTTATCTTCTTTAGGCCAACT 60.046 40.000 5.01 0.00 0.00 3.16
508 4182 5.570320 TGCTTATCTTCTTTAGGCCAACTT 58.430 37.500 5.01 0.00 0.00 2.66
509 4183 5.648092 TGCTTATCTTCTTTAGGCCAACTTC 59.352 40.000 5.01 0.00 0.00 3.01
510 4184 5.648092 GCTTATCTTCTTTAGGCCAACTTCA 59.352 40.000 5.01 0.00 0.00 3.02
511 4185 6.151144 GCTTATCTTCTTTAGGCCAACTTCAA 59.849 38.462 5.01 0.00 0.00 2.69
512 4186 5.966742 ATCTTCTTTAGGCCAACTTCAAC 57.033 39.130 5.01 0.00 0.00 3.18
513 4187 4.787551 TCTTCTTTAGGCCAACTTCAACA 58.212 39.130 5.01 0.00 0.00 3.33
514 4188 4.578928 TCTTCTTTAGGCCAACTTCAACAC 59.421 41.667 5.01 0.00 0.00 3.32
515 4189 3.892284 TCTTTAGGCCAACTTCAACACA 58.108 40.909 5.01 0.00 0.00 3.72
516 4190 3.630312 TCTTTAGGCCAACTTCAACACAC 59.370 43.478 5.01 0.00 0.00 3.82
517 4191 3.290948 TTAGGCCAACTTCAACACACT 57.709 42.857 5.01 0.00 0.00 3.55
518 4192 4.425180 TTAGGCCAACTTCAACACACTA 57.575 40.909 5.01 0.00 0.00 2.74
519 4193 2.572290 AGGCCAACTTCAACACACTAC 58.428 47.619 5.01 0.00 0.00 2.73
520 4194 1.607148 GGCCAACTTCAACACACTACC 59.393 52.381 0.00 0.00 0.00 3.18
521 4195 1.607148 GCCAACTTCAACACACTACCC 59.393 52.381 0.00 0.00 0.00 3.69
522 4196 2.748465 GCCAACTTCAACACACTACCCT 60.748 50.000 0.00 0.00 0.00 4.34
523 4197 3.495453 GCCAACTTCAACACACTACCCTA 60.495 47.826 0.00 0.00 0.00 3.53
524 4198 4.710324 CCAACTTCAACACACTACCCTAA 58.290 43.478 0.00 0.00 0.00 2.69
525 4199 5.127491 CCAACTTCAACACACTACCCTAAA 58.873 41.667 0.00 0.00 0.00 1.85
526 4200 5.008316 CCAACTTCAACACACTACCCTAAAC 59.992 44.000 0.00 0.00 0.00 2.01
527 4201 4.374399 ACTTCAACACACTACCCTAAACG 58.626 43.478 0.00 0.00 0.00 3.60
528 4202 3.389925 TCAACACACTACCCTAAACGG 57.610 47.619 0.00 0.00 0.00 4.44
529 4203 2.964464 TCAACACACTACCCTAAACGGA 59.036 45.455 0.00 0.00 33.16 4.69
530 4204 3.579586 TCAACACACTACCCTAAACGGAT 59.420 43.478 0.00 0.00 33.16 4.18
534 4208 3.194968 CACACTACCCTAAACGGATGTCT 59.805 47.826 0.00 0.00 33.16 3.41
543 4217 1.792006 AACGGATGTCTGTTTCGTCC 58.208 50.000 1.43 0.00 42.39 4.79
546 4220 0.739813 GGATGTCTGTTTCGTCCGGG 60.740 60.000 0.00 0.00 32.40 5.73
550 4224 0.863799 GTCTGTTTCGTCCGGGTTTC 59.136 55.000 0.00 0.00 0.00 2.78
555 4229 2.291190 TGTTTCGTCCGGGTTTCATTTC 59.709 45.455 0.00 0.00 0.00 2.17
565 4239 2.289631 GGGTTTCATTTCTTTGGGGCAG 60.290 50.000 0.00 0.00 0.00 4.85
569 4243 5.122519 GTTTCATTTCTTTGGGGCAGAAAA 58.877 37.500 2.37 0.00 42.23 2.29
572 4246 2.880963 TTCTTTGGGGCAGAAAAACG 57.119 45.000 0.00 0.00 0.00 3.60
577 4251 1.104577 TGGGGCAGAAAAACGGACAC 61.105 55.000 0.00 0.00 0.00 3.67
580 4254 1.658114 GCAGAAAAACGGACACCCC 59.342 57.895 0.00 0.00 0.00 4.95
592 4267 1.542472 GGACACCCCGTTTGTTTATGG 59.458 52.381 0.00 0.00 0.00 2.74
594 4269 2.624364 GACACCCCGTTTGTTTATGGTT 59.376 45.455 0.00 0.00 0.00 3.67
598 4273 2.362717 CCCCGTTTGTTTATGGTTGTGT 59.637 45.455 0.00 0.00 0.00 3.72
599 4274 3.568853 CCCCGTTTGTTTATGGTTGTGTA 59.431 43.478 0.00 0.00 0.00 2.90
600 4275 4.320641 CCCCGTTTGTTTATGGTTGTGTAG 60.321 45.833 0.00 0.00 0.00 2.74
603 4278 4.223659 GTTTGTTTATGGTTGTGTAGCCG 58.776 43.478 0.00 0.00 0.00 5.52
610 4285 0.389426 GGTTGTGTAGCCGTCGATGT 60.389 55.000 3.52 0.00 0.00 3.06
611 4286 0.713883 GTTGTGTAGCCGTCGATGTG 59.286 55.000 3.52 0.00 0.00 3.21
620 4295 2.358247 GTCGATGTGCCCAACCGT 60.358 61.111 0.00 0.00 0.00 4.83
623 4298 2.033448 GATGTGCCCAACCGTCCA 59.967 61.111 0.00 0.00 0.00 4.02
624 4299 1.602323 GATGTGCCCAACCGTCCAA 60.602 57.895 0.00 0.00 0.00 3.53
625 4300 1.152652 ATGTGCCCAACCGTCCAAA 60.153 52.632 0.00 0.00 0.00 3.28
664 5667 1.999024 GTGCAATTAATTTGGGCGGTG 59.001 47.619 0.00 0.00 35.75 4.94
666 5669 1.742071 GCAATTAATTTGGGCGGTGGG 60.742 52.381 0.00 0.00 35.75 4.61
671 5674 3.583882 ATTTGGGCGGTGGGAGGTG 62.584 63.158 0.00 0.00 0.00 4.00
699 5702 3.822192 CGACATGCGGGTCCGAGA 61.822 66.667 14.15 0.00 42.83 4.04
700 5703 2.815308 GACATGCGGGTCCGAGAT 59.185 61.111 14.15 1.17 42.83 2.75
715 5718 4.593864 GATGGACGAGGAGCGGGC 62.594 72.222 0.00 0.00 46.49 6.13
722 5725 4.803426 GAGGAGCGGGCACGTGAG 62.803 72.222 22.23 10.75 43.45 3.51
735 5738 3.366392 CGTGAGCGTCCATTTGTTG 57.634 52.632 0.00 0.00 0.00 3.33
736 5739 0.586319 CGTGAGCGTCCATTTGTTGT 59.414 50.000 0.00 0.00 0.00 3.32
737 5740 1.398451 CGTGAGCGTCCATTTGTTGTC 60.398 52.381 0.00 0.00 0.00 3.18
738 5741 1.069227 GTGAGCGTCCATTTGTTGTCC 60.069 52.381 0.00 0.00 0.00 4.02
739 5742 0.165944 GAGCGTCCATTTGTTGTCCG 59.834 55.000 0.00 0.00 0.00 4.79
740 5743 0.534203 AGCGTCCATTTGTTGTCCGT 60.534 50.000 0.00 0.00 0.00 4.69
741 5744 0.110373 GCGTCCATTTGTTGTCCGTC 60.110 55.000 0.00 0.00 0.00 4.79
742 5745 1.508632 CGTCCATTTGTTGTCCGTCT 58.491 50.000 0.00 0.00 0.00 4.18
743 5746 1.194547 CGTCCATTTGTTGTCCGTCTG 59.805 52.381 0.00 0.00 0.00 3.51
744 5747 2.489971 GTCCATTTGTTGTCCGTCTGA 58.510 47.619 0.00 0.00 0.00 3.27
745 5748 2.223377 GTCCATTTGTTGTCCGTCTGAC 59.777 50.000 0.00 0.00 44.72 3.51
756 5759 3.349972 CGTCTGACACGCATGTTTG 57.650 52.632 8.73 0.00 42.87 2.93
757 5760 0.722469 CGTCTGACACGCATGTTTGC 60.722 55.000 8.73 0.00 42.87 3.68
770 5773 3.587923 CATGTTTGCATCGAAAATGGGT 58.412 40.909 0.00 0.00 31.99 4.51
771 5774 3.296322 TGTTTGCATCGAAAATGGGTC 57.704 42.857 0.00 0.00 0.00 4.46
772 5775 2.250188 GTTTGCATCGAAAATGGGTCG 58.750 47.619 0.00 0.00 39.88 4.79
777 5780 3.411808 TCGAAAATGGGTCGAGTCG 57.588 52.632 6.09 6.09 42.31 4.18
778 5781 0.108992 TCGAAAATGGGTCGAGTCGG 60.109 55.000 13.54 0.00 42.31 4.79
779 5782 0.108992 CGAAAATGGGTCGAGTCGGA 60.109 55.000 13.54 0.00 41.02 4.55
780 5783 1.356938 GAAAATGGGTCGAGTCGGAC 58.643 55.000 13.54 9.41 36.18 4.79
781 5784 0.974383 AAAATGGGTCGAGTCGGACT 59.026 50.000 11.09 11.09 37.12 3.85
782 5785 0.531200 AAATGGGTCGAGTCGGACTC 59.469 55.000 24.85 24.85 41.71 3.36
783 5786 0.323542 AATGGGTCGAGTCGGACTCT 60.324 55.000 29.59 12.05 42.92 3.24
784 5787 0.545171 ATGGGTCGAGTCGGACTCTA 59.455 55.000 29.59 19.94 42.92 2.43
785 5788 0.325933 TGGGTCGAGTCGGACTCTAA 59.674 55.000 29.59 18.03 42.92 2.10
786 5789 1.271543 TGGGTCGAGTCGGACTCTAAA 60.272 52.381 29.59 15.88 42.92 1.85
787 5790 1.401199 GGGTCGAGTCGGACTCTAAAG 59.599 57.143 29.59 17.44 42.92 1.85
788 5791 2.354259 GGTCGAGTCGGACTCTAAAGA 58.646 52.381 29.59 19.16 42.92 2.52
789 5792 2.746362 GGTCGAGTCGGACTCTAAAGAA 59.254 50.000 29.59 10.20 42.92 2.52
790 5793 3.190118 GGTCGAGTCGGACTCTAAAGAAA 59.810 47.826 29.59 8.74 42.92 2.52
791 5794 4.142425 GGTCGAGTCGGACTCTAAAGAAAT 60.142 45.833 29.59 0.00 42.92 2.17
792 5795 5.065731 GGTCGAGTCGGACTCTAAAGAAATA 59.934 44.000 29.59 6.72 42.92 1.40
793 5796 6.238703 GGTCGAGTCGGACTCTAAAGAAATAT 60.239 42.308 29.59 0.00 42.92 1.28
794 5797 7.194962 GTCGAGTCGGACTCTAAAGAAATATT 58.805 38.462 29.59 0.00 42.92 1.28
795 5798 7.701501 GTCGAGTCGGACTCTAAAGAAATATTT 59.298 37.037 29.59 0.00 42.92 1.40
796 5799 8.248945 TCGAGTCGGACTCTAAAGAAATATTTT 58.751 33.333 29.59 0.00 42.92 1.82
797 5800 8.870879 CGAGTCGGACTCTAAAGAAATATTTTT 58.129 33.333 29.59 0.00 42.92 1.94
822 5825 2.665185 GAGGTTGCGCGTTGGACT 60.665 61.111 8.43 0.00 0.00 3.85
827 5830 1.954146 TTGCGCGTTGGACTGTCTC 60.954 57.895 8.43 0.00 0.00 3.36
848 5851 1.894756 CTGTCCGTTTGGGCCGAAA 60.895 57.895 9.10 9.10 40.01 3.46
981 6006 1.618640 GGAACAGAGCGAGCGAACAC 61.619 60.000 0.00 0.00 0.00 3.32
1210 6256 2.027460 CAGTGGTTTTGGTGGCGC 59.973 61.111 0.00 0.00 0.00 6.53
1448 6495 1.668047 GCAGCTTCCATGTTCTTGCAC 60.668 52.381 0.00 0.00 0.00 4.57
1586 6634 1.600164 GCGTTTTTCTGCATGCACAGA 60.600 47.619 18.46 11.25 44.84 3.41
1587 6635 2.923605 GCGTTTTTCTGCATGCACAGAT 60.924 45.455 18.46 0.00 45.75 2.90
1593 6641 3.354948 TCTGCATGCACAGATTAAGGT 57.645 42.857 18.46 0.00 41.72 3.50
1594 6642 3.273434 TCTGCATGCACAGATTAAGGTC 58.727 45.455 18.46 0.00 41.72 3.85
1595 6643 2.357009 CTGCATGCACAGATTAAGGTCC 59.643 50.000 18.46 0.00 40.25 4.46
1596 6644 1.678101 GCATGCACAGATTAAGGTCCC 59.322 52.381 14.21 0.00 0.00 4.46
1597 6645 1.942657 CATGCACAGATTAAGGTCCCG 59.057 52.381 0.00 0.00 0.00 5.14
1598 6646 0.981183 TGCACAGATTAAGGTCCCGT 59.019 50.000 0.00 0.00 0.00 5.28
1599 6647 1.349688 TGCACAGATTAAGGTCCCGTT 59.650 47.619 0.00 0.00 0.00 4.44
1600 6648 2.224670 TGCACAGATTAAGGTCCCGTTT 60.225 45.455 0.00 0.00 0.00 3.60
1601 6649 2.161609 GCACAGATTAAGGTCCCGTTTG 59.838 50.000 0.00 0.00 0.00 2.93
1602 6650 2.747446 CACAGATTAAGGTCCCGTTTGG 59.253 50.000 0.00 0.00 0.00 3.28
1603 6651 2.640826 ACAGATTAAGGTCCCGTTTGGA 59.359 45.455 0.00 0.00 42.41 3.53
1611 6659 1.996086 TCCCGTTTGGATTCCCTCC 59.004 57.895 0.00 0.00 45.19 4.30
1618 6666 4.610714 GGATTCCCTCCGCTCCGC 62.611 72.222 0.00 0.00 33.29 5.54
1645 6693 4.845580 CCGGAGCAGAGCGGCAAT 62.846 66.667 0.00 0.00 35.83 3.56
1646 6694 3.267860 CGGAGCAGAGCGGCAATC 61.268 66.667 1.45 0.00 35.83 2.67
1647 6695 2.899339 GGAGCAGAGCGGCAATCC 60.899 66.667 1.45 0.00 35.83 3.01
1648 6696 2.124983 GAGCAGAGCGGCAATCCA 60.125 61.111 1.45 0.00 35.83 3.41
1649 6697 2.124819 AGCAGAGCGGCAATCCAG 60.125 61.111 1.45 0.00 35.83 3.86
1650 6698 2.437359 GCAGAGCGGCAATCCAGT 60.437 61.111 1.45 0.00 0.00 4.00
1651 6699 2.042831 GCAGAGCGGCAATCCAGTT 61.043 57.895 1.45 0.00 0.00 3.16
1652 6700 0.744414 GCAGAGCGGCAATCCAGTTA 60.744 55.000 1.45 0.00 0.00 2.24
1653 6701 1.293924 CAGAGCGGCAATCCAGTTAG 58.706 55.000 1.45 0.00 0.00 2.34
1654 6702 0.179000 AGAGCGGCAATCCAGTTAGG 59.821 55.000 1.45 0.00 39.47 2.69
1655 6703 0.815615 GAGCGGCAATCCAGTTAGGG 60.816 60.000 1.45 0.00 38.24 3.53
1656 6704 1.223487 GCGGCAATCCAGTTAGGGA 59.777 57.895 0.00 0.00 42.21 4.20
1657 6705 0.815615 GCGGCAATCCAGTTAGGGAG 60.816 60.000 0.00 0.00 41.08 4.30
1658 6706 0.815615 CGGCAATCCAGTTAGGGAGC 60.816 60.000 0.00 0.00 41.08 4.70
1659 6707 0.815615 GGCAATCCAGTTAGGGAGCG 60.816 60.000 0.00 0.00 41.08 5.03
1660 6708 0.107654 GCAATCCAGTTAGGGAGCGT 60.108 55.000 0.00 0.00 41.08 5.07
1661 6709 1.679032 GCAATCCAGTTAGGGAGCGTT 60.679 52.381 0.00 0.00 41.08 4.84
1662 6710 2.280628 CAATCCAGTTAGGGAGCGTTC 58.719 52.381 0.00 0.00 41.08 3.95
1663 6711 0.460311 ATCCAGTTAGGGAGCGTTCG 59.540 55.000 0.00 0.00 41.08 3.95
1664 6712 1.153628 CCAGTTAGGGAGCGTTCGG 60.154 63.158 0.00 0.00 0.00 4.30
1665 6713 1.601419 CCAGTTAGGGAGCGTTCGGA 61.601 60.000 0.00 0.00 0.00 4.55
1666 6714 0.245539 CAGTTAGGGAGCGTTCGGAA 59.754 55.000 0.00 0.00 0.00 4.30
1667 6715 1.134788 CAGTTAGGGAGCGTTCGGAAT 60.135 52.381 0.00 0.00 0.00 3.01
1668 6716 1.136500 AGTTAGGGAGCGTTCGGAATC 59.864 52.381 0.00 0.00 0.00 2.52
1669 6717 0.462789 TTAGGGAGCGTTCGGAATCC 59.537 55.000 0.00 0.00 0.00 3.01
1670 6718 2.203029 GGGAGCGTTCGGAATCCC 60.203 66.667 11.17 11.17 44.48 3.85
1671 6719 2.732619 GGGAGCGTTCGGAATCCCT 61.733 63.158 17.08 4.54 46.72 4.20
1672 6720 1.227292 GGAGCGTTCGGAATCCCTC 60.227 63.158 0.00 0.73 0.00 4.30
1673 6721 1.227292 GAGCGTTCGGAATCCCTCC 60.227 63.158 0.00 0.00 41.40 4.30
1674 6722 1.956629 GAGCGTTCGGAATCCCTCCA 61.957 60.000 0.00 0.00 45.74 3.86
1675 6723 1.814169 GCGTTCGGAATCCCTCCAC 60.814 63.158 0.00 0.00 45.74 4.02
1676 6724 1.898154 CGTTCGGAATCCCTCCACT 59.102 57.895 0.00 0.00 45.74 4.00
1677 6725 0.179108 CGTTCGGAATCCCTCCACTC 60.179 60.000 0.00 0.00 45.74 3.51
1678 6726 0.178301 GTTCGGAATCCCTCCACTCC 59.822 60.000 0.00 0.00 45.74 3.85
1679 6727 0.981277 TTCGGAATCCCTCCACTCCC 60.981 60.000 0.00 0.00 45.74 4.30
1680 6728 1.689233 CGGAATCCCTCCACTCCCA 60.689 63.158 0.00 0.00 45.74 4.37
1681 6729 1.271840 CGGAATCCCTCCACTCCCAA 61.272 60.000 0.00 0.00 45.74 4.12
1682 6730 0.548510 GGAATCCCTCCACTCCCAAG 59.451 60.000 0.00 0.00 44.67 3.61
1683 6731 1.290134 GAATCCCTCCACTCCCAAGT 58.710 55.000 0.00 0.00 35.60 3.16
1684 6732 1.210722 GAATCCCTCCACTCCCAAGTC 59.789 57.143 0.00 0.00 31.71 3.01
1685 6733 0.119155 ATCCCTCCACTCCCAAGTCA 59.881 55.000 0.00 0.00 31.71 3.41
1686 6734 0.545309 TCCCTCCACTCCCAAGTCAG 60.545 60.000 0.00 0.00 31.71 3.51
1687 6735 1.298014 CCTCCACTCCCAAGTCAGC 59.702 63.158 0.00 0.00 31.71 4.26
1688 6736 1.197430 CCTCCACTCCCAAGTCAGCT 61.197 60.000 0.00 0.00 31.71 4.24
1689 6737 0.248843 CTCCACTCCCAAGTCAGCTC 59.751 60.000 0.00 0.00 31.71 4.09
1690 6738 1.079543 CCACTCCCAAGTCAGCTCG 60.080 63.158 0.00 0.00 31.71 5.03
1691 6739 1.739562 CACTCCCAAGTCAGCTCGC 60.740 63.158 0.00 0.00 31.71 5.03
1692 6740 2.507992 CTCCCAAGTCAGCTCGCG 60.508 66.667 0.00 0.00 0.00 5.87
1693 6741 3.997064 CTCCCAAGTCAGCTCGCGG 62.997 68.421 6.13 0.00 0.00 6.46
1694 6742 4.069232 CCCAAGTCAGCTCGCGGA 62.069 66.667 6.13 0.00 0.00 5.54
1695 6743 2.507992 CCAAGTCAGCTCGCGGAG 60.508 66.667 6.13 3.47 0.00 4.63
1721 6769 3.769201 GCTGCAGGCTGAAAAGGT 58.231 55.556 20.86 0.00 38.06 3.50
1722 6770 2.946947 GCTGCAGGCTGAAAAGGTA 58.053 52.632 20.86 0.00 38.06 3.08
1723 6771 1.247567 GCTGCAGGCTGAAAAGGTAA 58.752 50.000 20.86 0.00 38.06 2.85
1724 6772 1.613437 GCTGCAGGCTGAAAAGGTAAA 59.387 47.619 20.86 0.00 38.06 2.01
1725 6773 2.352127 GCTGCAGGCTGAAAAGGTAAAG 60.352 50.000 20.86 0.00 38.06 1.85
1726 6774 1.613437 TGCAGGCTGAAAAGGTAAAGC 59.387 47.619 20.86 0.00 34.86 3.51
1727 6775 1.889170 GCAGGCTGAAAAGGTAAAGCT 59.111 47.619 20.86 0.00 35.93 3.74
1728 6776 2.352127 GCAGGCTGAAAAGGTAAAGCTG 60.352 50.000 20.86 0.00 35.93 4.24
1729 6777 3.149196 CAGGCTGAAAAGGTAAAGCTGA 58.851 45.455 9.42 0.00 35.93 4.26
1730 6778 3.190118 CAGGCTGAAAAGGTAAAGCTGAG 59.810 47.826 9.42 0.00 35.93 3.35
1731 6779 3.073062 AGGCTGAAAAGGTAAAGCTGAGA 59.927 43.478 0.00 0.00 35.93 3.27
1732 6780 4.013050 GGCTGAAAAGGTAAAGCTGAGAT 58.987 43.478 0.00 0.00 35.93 2.75
1733 6781 5.045578 AGGCTGAAAAGGTAAAGCTGAGATA 60.046 40.000 0.00 0.00 35.93 1.98
1734 6782 5.825151 GGCTGAAAAGGTAAAGCTGAGATAT 59.175 40.000 0.00 0.00 35.93 1.63
1735 6783 6.992715 GGCTGAAAAGGTAAAGCTGAGATATA 59.007 38.462 0.00 0.00 35.93 0.86
1736 6784 7.041712 GGCTGAAAAGGTAAAGCTGAGATATAC 60.042 40.741 0.00 0.00 35.93 1.47
1737 6785 7.306866 GCTGAAAAGGTAAAGCTGAGATATACG 60.307 40.741 0.00 0.00 32.82 3.06
1738 6786 6.479001 TGAAAAGGTAAAGCTGAGATATACGC 59.521 38.462 0.00 0.00 0.00 4.42
1739 6787 4.162096 AGGTAAAGCTGAGATATACGCG 57.838 45.455 3.53 3.53 0.00 6.01
1740 6788 2.662156 GGTAAAGCTGAGATATACGCGC 59.338 50.000 5.73 0.00 0.00 6.86
1741 6789 2.802787 AAAGCTGAGATATACGCGCT 57.197 45.000 5.73 0.00 32.52 5.92
1742 6790 2.339728 AAGCTGAGATATACGCGCTC 57.660 50.000 5.73 4.66 31.44 5.03
1743 6791 0.523966 AGCTGAGATATACGCGCTCC 59.476 55.000 5.73 0.00 0.00 4.70
1744 6792 0.794981 GCTGAGATATACGCGCTCCG 60.795 60.000 5.73 1.56 44.21 4.63
1790 6838 3.349022 CCGAACAGGCCCTTAATTTACA 58.651 45.455 0.00 0.00 0.00 2.41
1791 6839 3.128068 CCGAACAGGCCCTTAATTTACAC 59.872 47.826 0.00 0.00 0.00 2.90
1792 6840 3.128068 CGAACAGGCCCTTAATTTACACC 59.872 47.826 0.00 0.00 0.00 4.16
1793 6841 3.818295 ACAGGCCCTTAATTTACACCA 57.182 42.857 0.00 0.00 0.00 4.17
1794 6842 4.331159 ACAGGCCCTTAATTTACACCAT 57.669 40.909 0.00 0.00 0.00 3.55
1795 6843 5.459982 ACAGGCCCTTAATTTACACCATA 57.540 39.130 0.00 0.00 0.00 2.74
1796 6844 5.833340 ACAGGCCCTTAATTTACACCATAA 58.167 37.500 0.00 0.00 0.00 1.90
1797 6845 6.440354 ACAGGCCCTTAATTTACACCATAAT 58.560 36.000 0.00 0.00 0.00 1.28
1798 6846 6.900743 ACAGGCCCTTAATTTACACCATAATT 59.099 34.615 0.00 0.00 0.00 1.40
1799 6847 7.401782 ACAGGCCCTTAATTTACACCATAATTT 59.598 33.333 0.00 0.00 0.00 1.82
1800 6848 8.919145 CAGGCCCTTAATTTACACCATAATTTA 58.081 33.333 0.00 0.00 0.00 1.40
1801 6849 9.495382 AGGCCCTTAATTTACACCATAATTTAA 57.505 29.630 0.00 0.00 0.00 1.52
1802 6850 9.758651 GGCCCTTAATTTACACCATAATTTAAG 57.241 33.333 0.00 10.98 34.02 1.85
1803 6851 9.758651 GCCCTTAATTTACACCATAATTTAAGG 57.241 33.333 20.67 20.67 42.67 2.69
1810 6858 8.943594 TTTACACCATAATTTAAGGAGTTGGT 57.056 30.769 4.75 0.00 36.46 3.67
1811 6859 8.943594 TTACACCATAATTTAAGGAGTTGGTT 57.056 30.769 4.75 0.00 33.88 3.67
1813 6861 8.943594 ACACCATAATTTAAGGAGTTGGTTAA 57.056 30.769 4.75 0.00 33.88 2.01
1814 6862 9.369672 ACACCATAATTTAAGGAGTTGGTTAAA 57.630 29.630 4.75 0.00 33.88 1.52
1815 6863 9.634163 CACCATAATTTAAGGAGTTGGTTAAAC 57.366 33.333 4.75 0.00 39.24 2.01
1816 6864 8.809066 ACCATAATTTAAGGAGTTGGTTAAACC 58.191 33.333 4.75 0.00 39.85 3.27
1817 6865 8.255206 CCATAATTTAAGGAGTTGGTTAAACCC 58.745 37.037 0.00 0.00 39.85 4.11
1818 6866 6.675413 AATTTAAGGAGTTGGTTAAACCCC 57.325 37.500 0.00 0.00 39.85 4.95
1819 6867 2.281539 AAGGAGTTGGTTAAACCCCG 57.718 50.000 0.00 0.00 41.46 5.73
1820 6868 0.251033 AGGAGTTGGTTAAACCCCGC 60.251 55.000 0.00 0.00 41.46 6.13
1821 6869 0.251033 GGAGTTGGTTAAACCCCGCT 60.251 55.000 0.00 0.00 39.85 5.52
1822 6870 1.162698 GAGTTGGTTAAACCCCGCTC 58.837 55.000 0.00 0.00 39.85 5.03
1823 6871 0.769247 AGTTGGTTAAACCCCGCTCT 59.231 50.000 0.00 0.00 39.85 4.09
1824 6872 0.879090 GTTGGTTAAACCCCGCTCTG 59.121 55.000 0.00 0.00 37.50 3.35
1825 6873 0.891904 TTGGTTAAACCCCGCTCTGC 60.892 55.000 0.00 0.00 37.50 4.26
1854 6902 2.870161 CGCGAGGACTGTCGAACG 60.870 66.667 0.00 12.76 42.85 3.95
1855 6903 3.173240 GCGAGGACTGTCGAACGC 61.173 66.667 21.18 21.18 42.85 4.84
1856 6904 2.870161 CGAGGACTGTCGAACGCG 60.870 66.667 3.53 3.53 42.85 6.01
1857 6905 2.504244 GAGGACTGTCGAACGCGG 60.504 66.667 12.47 0.00 38.28 6.46
1858 6906 4.719369 AGGACTGTCGAACGCGGC 62.719 66.667 12.47 0.04 43.78 6.53
1860 6908 4.719369 GACTGTCGAACGCGGCCT 62.719 66.667 12.47 0.00 42.58 5.19
1861 6909 3.332493 GACTGTCGAACGCGGCCTA 62.332 63.158 12.47 0.00 42.58 3.93
1862 6910 2.126228 CTGTCGAACGCGGCCTAA 60.126 61.111 12.47 0.00 42.58 2.69
1863 6911 2.126228 TGTCGAACGCGGCCTAAG 60.126 61.111 12.47 0.00 42.58 2.18
1864 6912 2.884207 GTCGAACGCGGCCTAAGG 60.884 66.667 12.47 0.00 35.76 2.69
1885 6933 2.029918 GCCAAAAGCCGTCTCTCAAATT 60.030 45.455 0.00 0.00 34.35 1.82
1886 6934 3.190535 GCCAAAAGCCGTCTCTCAAATTA 59.809 43.478 0.00 0.00 34.35 1.40
1887 6935 4.672801 GCCAAAAGCCGTCTCTCAAATTAG 60.673 45.833 0.00 0.00 34.35 1.73
1888 6936 4.695455 CCAAAAGCCGTCTCTCAAATTAGA 59.305 41.667 0.00 0.00 0.00 2.10
1903 6951 5.708697 TCAAATTAGAGTCACTGTCCGTCTA 59.291 40.000 0.00 0.00 0.00 2.59
1960 7591 5.509840 CCAAGTTAATACTCCCTCCGATCAG 60.510 48.000 0.00 0.00 31.99 2.90
1988 7619 3.131396 AGTGTCGTGCCTTCAAACTAAG 58.869 45.455 0.00 0.00 0.00 2.18
1989 7620 2.870411 GTGTCGTGCCTTCAAACTAAGT 59.130 45.455 0.00 0.00 0.00 2.24
2014 7646 4.607955 GAACTAACCTTGGTTCAAACTGC 58.392 43.478 8.46 0.00 44.84 4.40
2076 7708 6.815641 ACACATTTCATTAACAAAAGTGCACA 59.184 30.769 21.04 0.00 0.00 4.57
2083 7715 7.208777 TCATTAACAAAAGTGCACATGACATT 58.791 30.769 21.04 8.41 0.00 2.71
2109 9358 8.767478 TTTTTAACCTAGTCTAAATCTCCACG 57.233 34.615 0.00 0.00 0.00 4.94
2111 9360 8.579850 TTTAACCTAGTCTAAATCTCCACGTA 57.420 34.615 0.00 0.00 0.00 3.57
2112 9361 6.448207 AACCTAGTCTAAATCTCCACGTAC 57.552 41.667 0.00 0.00 0.00 3.67
2149 9398 2.500504 GTTCCACGTCCTATTCTTCCCT 59.499 50.000 0.00 0.00 0.00 4.20
2150 9399 3.675348 TCCACGTCCTATTCTTCCCTA 57.325 47.619 0.00 0.00 0.00 3.53
2151 9400 4.194678 TCCACGTCCTATTCTTCCCTAT 57.805 45.455 0.00 0.00 0.00 2.57
2152 9401 3.895656 TCCACGTCCTATTCTTCCCTATG 59.104 47.826 0.00 0.00 0.00 2.23
2153 9402 3.641906 CCACGTCCTATTCTTCCCTATGT 59.358 47.826 0.00 0.00 0.00 2.29
2154 9403 4.101119 CCACGTCCTATTCTTCCCTATGTT 59.899 45.833 0.00 0.00 0.00 2.71
2155 9404 5.290386 CACGTCCTATTCTTCCCTATGTTC 58.710 45.833 0.00 0.00 0.00 3.18
2156 9405 4.037684 ACGTCCTATTCTTCCCTATGTTCG 59.962 45.833 0.00 0.00 0.00 3.95
2157 9406 4.037684 CGTCCTATTCTTCCCTATGTTCGT 59.962 45.833 0.00 0.00 0.00 3.85
2158 9407 5.290386 GTCCTATTCTTCCCTATGTTCGTG 58.710 45.833 0.00 0.00 0.00 4.35
2162 9411 1.906574 TCTTCCCTATGTTCGTGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
2178 9427 2.158957 TGGCTTCGAGAAGTGAAGTTGT 60.159 45.455 13.58 0.00 43.72 3.32
2188 9437 3.053831 AGTGAAGTTGTGGGTAATCGG 57.946 47.619 0.00 0.00 0.00 4.18
2196 9445 3.937447 GGGTAATCGGCGAGGGGG 61.937 72.222 17.22 0.00 0.00 5.40
2198 9447 2.735237 GTAATCGGCGAGGGGGAG 59.265 66.667 17.22 0.00 0.00 4.30
2232 9481 1.913262 ACGGAGCTGTCCCACATGA 60.913 57.895 0.00 0.00 40.20 3.07
2275 9525 2.233305 TGTCCCACCTCTACTCTTCC 57.767 55.000 0.00 0.00 0.00 3.46
2279 9529 2.242708 TCCCACCTCTACTCTTCCTCTC 59.757 54.545 0.00 0.00 0.00 3.20
2289 9539 0.699399 TCTTCCTCTCCGGAGTCTGT 59.301 55.000 30.17 0.00 44.28 3.41
2298 9548 1.741706 TCCGGAGTCTGTCGTATGAAC 59.258 52.381 0.00 0.00 0.00 3.18
2327 9577 0.040870 CGAGATGAGGTCCACGATCG 60.041 60.000 14.88 14.88 31.76 3.69
2330 9580 0.738975 GATGAGGTCCACGATCGACA 59.261 55.000 24.34 9.78 31.55 4.35
2337 9587 1.067060 GTCCACGATCGACATGGATGA 59.933 52.381 23.79 4.52 44.21 2.92
2340 9590 1.035923 ACGATCGACATGGATGAGCT 58.964 50.000 24.34 0.00 0.00 4.09
2359 9609 1.593209 GGTCTTGTGGTCGTTGCGA 60.593 57.895 0.00 0.00 0.00 5.10
2378 9628 2.280524 CGGGCAAGAACCGTGTGA 60.281 61.111 0.00 0.00 46.03 3.58
2450 9700 2.985512 GATCGCCTGCATCGCCTCTT 62.986 60.000 3.90 0.00 0.00 2.85
2451 9701 2.599645 ATCGCCTGCATCGCCTCTTT 62.600 55.000 3.90 0.00 0.00 2.52
2474 9724 1.666234 GCCTCCGCATCGATCTTCC 60.666 63.158 0.00 0.00 34.03 3.46
2492 9742 1.668294 CTGAACAGGGCGTCAGTCT 59.332 57.895 0.00 0.00 0.00 3.24
2525 9775 3.200593 CCAGCTGCCATCACTCGC 61.201 66.667 8.66 0.00 0.00 5.03
2535 9785 3.371097 ATCACTCGCGGCCGATGTT 62.371 57.895 33.48 12.76 43.47 2.71
2537 9787 4.373116 ACTCGCGGCCGATGTTGT 62.373 61.111 33.48 19.05 43.47 3.32
2545 9795 4.465512 CCGATGTTGTGGCGCTGC 62.466 66.667 7.64 0.29 0.00 5.25
2564 9814 1.775039 CGCATGGATTGGTACAGCGG 61.775 60.000 0.00 0.00 42.39 5.52
2566 9817 1.523711 ATGGATTGGTACAGCGGCG 60.524 57.895 0.51 0.51 42.39 6.46
2589 9840 1.384502 TCATCCCGGGAGCCTGAAT 60.385 57.895 30.42 7.08 0.00 2.57
2642 9901 0.320374 TCGTCTGCGATTTGTCCCTT 59.680 50.000 0.00 0.00 42.81 3.95
2643 9902 0.443869 CGTCTGCGATTTGTCCCTTG 59.556 55.000 0.00 0.00 41.33 3.61
2703 9962 0.679002 GCTCCTCTTGCAGCATCCAA 60.679 55.000 0.00 0.00 35.56 3.53
2705 9964 2.165167 CTCCTCTTGCAGCATCCAAAA 58.835 47.619 0.00 0.00 0.00 2.44
2707 9966 1.614903 CCTCTTGCAGCATCCAAAACA 59.385 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.056179 TCATAGTGCACGGATTTCACTGA 60.056 43.478 12.01 0.66 40.80 3.41
55 3710 6.408434 GGAGGATTAAAATTCATGGCATTGGT 60.408 38.462 0.00 0.00 0.00 3.67
195 3851 3.181490 TGCCTGTACGTCTAGCATTACTG 60.181 47.826 0.00 0.00 0.00 2.74
196 3852 3.021695 TGCCTGTACGTCTAGCATTACT 58.978 45.455 0.00 0.00 0.00 2.24
197 3853 3.114065 GTGCCTGTACGTCTAGCATTAC 58.886 50.000 0.00 0.00 35.62 1.89
198 3854 3.021695 AGTGCCTGTACGTCTAGCATTA 58.978 45.455 0.00 0.00 35.62 1.90
199 3855 1.825474 AGTGCCTGTACGTCTAGCATT 59.175 47.619 0.00 0.00 35.62 3.56
200 3856 1.475403 AGTGCCTGTACGTCTAGCAT 58.525 50.000 0.00 0.00 35.62 3.79
201 3857 1.254026 AAGTGCCTGTACGTCTAGCA 58.746 50.000 0.00 0.00 0.00 3.49
202 3858 2.163010 TGTAAGTGCCTGTACGTCTAGC 59.837 50.000 0.00 0.00 0.00 3.42
203 3859 3.181499 CCTGTAAGTGCCTGTACGTCTAG 60.181 52.174 0.00 0.00 0.00 2.43
204 3860 2.751259 CCTGTAAGTGCCTGTACGTCTA 59.249 50.000 0.00 0.00 0.00 2.59
205 3861 1.544691 CCTGTAAGTGCCTGTACGTCT 59.455 52.381 0.00 0.00 0.00 4.18
206 3862 1.992170 CCTGTAAGTGCCTGTACGTC 58.008 55.000 0.00 0.00 0.00 4.34
207 3863 0.037605 GCCTGTAAGTGCCTGTACGT 60.038 55.000 0.00 0.00 0.00 3.57
208 3864 0.246635 AGCCTGTAAGTGCCTGTACG 59.753 55.000 0.00 0.00 31.60 3.67
209 3865 1.275291 TCAGCCTGTAAGTGCCTGTAC 59.725 52.381 0.00 0.00 31.60 2.90
210 3866 1.639722 TCAGCCTGTAAGTGCCTGTA 58.360 50.000 0.00 0.00 31.60 2.74
211 3867 0.764890 TTCAGCCTGTAAGTGCCTGT 59.235 50.000 0.00 0.00 31.60 4.00
212 3868 2.119801 ATTCAGCCTGTAAGTGCCTG 57.880 50.000 0.00 0.00 31.60 4.85
213 3869 2.887151 AATTCAGCCTGTAAGTGCCT 57.113 45.000 0.00 0.00 31.60 4.75
214 3870 4.010349 ACTAAATTCAGCCTGTAAGTGCC 58.990 43.478 0.00 0.00 31.60 5.01
215 3871 5.629079 AACTAAATTCAGCCTGTAAGTGC 57.371 39.130 0.00 0.00 0.00 4.40
216 3872 7.519002 GTGTAACTAAATTCAGCCTGTAAGTG 58.481 38.462 0.00 0.00 0.00 3.16
217 3873 6.367969 CGTGTAACTAAATTCAGCCTGTAAGT 59.632 38.462 0.00 0.00 31.75 2.24
218 3874 6.672357 GCGTGTAACTAAATTCAGCCTGTAAG 60.672 42.308 0.00 0.00 31.75 2.34
219 3875 5.121142 GCGTGTAACTAAATTCAGCCTGTAA 59.879 40.000 0.00 0.00 31.75 2.41
220 3876 4.628333 GCGTGTAACTAAATTCAGCCTGTA 59.372 41.667 0.00 0.00 31.75 2.74
221 3877 3.435671 GCGTGTAACTAAATTCAGCCTGT 59.564 43.478 0.00 0.00 31.75 4.00
222 3878 3.684788 AGCGTGTAACTAAATTCAGCCTG 59.315 43.478 0.00 0.00 31.75 4.85
223 3879 3.684788 CAGCGTGTAACTAAATTCAGCCT 59.315 43.478 0.00 0.00 31.75 4.58
224 3880 3.682858 TCAGCGTGTAACTAAATTCAGCC 59.317 43.478 0.00 0.00 31.75 4.85
225 3881 4.151689 TGTCAGCGTGTAACTAAATTCAGC 59.848 41.667 0.00 0.00 31.75 4.26
226 3882 5.839262 TGTCAGCGTGTAACTAAATTCAG 57.161 39.130 0.00 0.00 31.75 3.02
227 3883 5.121611 CCATGTCAGCGTGTAACTAAATTCA 59.878 40.000 0.00 0.00 31.75 2.57
228 3884 5.560148 CCATGTCAGCGTGTAACTAAATTC 58.440 41.667 0.00 0.00 31.75 2.17
229 3885 4.142687 GCCATGTCAGCGTGTAACTAAATT 60.143 41.667 0.00 0.00 31.75 1.82
230 3886 3.374058 GCCATGTCAGCGTGTAACTAAAT 59.626 43.478 0.00 0.00 31.75 1.40
231 3887 2.739913 GCCATGTCAGCGTGTAACTAAA 59.260 45.455 0.00 0.00 31.75 1.85
232 3888 2.289133 TGCCATGTCAGCGTGTAACTAA 60.289 45.455 0.00 0.00 31.75 2.24
233 3889 1.273886 TGCCATGTCAGCGTGTAACTA 59.726 47.619 0.00 0.00 31.75 2.24
234 3890 0.034756 TGCCATGTCAGCGTGTAACT 59.965 50.000 0.00 0.00 31.75 2.24
235 3891 0.871722 TTGCCATGTCAGCGTGTAAC 59.128 50.000 0.00 0.00 0.00 2.50
236 3892 1.598882 TTTGCCATGTCAGCGTGTAA 58.401 45.000 0.00 0.00 0.00 2.41
237 3893 1.598882 TTTTGCCATGTCAGCGTGTA 58.401 45.000 0.00 0.00 0.00 2.90
238 3894 0.961019 ATTTTGCCATGTCAGCGTGT 59.039 45.000 0.00 0.00 0.00 4.49
239 3895 1.342555 CATTTTGCCATGTCAGCGTG 58.657 50.000 0.00 0.00 0.00 5.34
240 3896 0.244450 CCATTTTGCCATGTCAGCGT 59.756 50.000 0.00 0.00 0.00 5.07
241 3897 0.458889 CCCATTTTGCCATGTCAGCG 60.459 55.000 0.00 0.00 0.00 5.18
242 3898 0.896923 TCCCATTTTGCCATGTCAGC 59.103 50.000 0.00 0.00 0.00 4.26
243 3899 3.527533 CAATCCCATTTTGCCATGTCAG 58.472 45.455 0.00 0.00 0.00 3.51
244 3900 2.236644 CCAATCCCATTTTGCCATGTCA 59.763 45.455 0.00 0.00 0.00 3.58
245 3901 2.500910 TCCAATCCCATTTTGCCATGTC 59.499 45.455 0.00 0.00 0.00 3.06
246 3902 2.549082 TCCAATCCCATTTTGCCATGT 58.451 42.857 0.00 0.00 0.00 3.21
247 3903 3.630892 TTCCAATCCCATTTTGCCATG 57.369 42.857 0.00 0.00 0.00 3.66
248 3904 3.845398 TCTTTCCAATCCCATTTTGCCAT 59.155 39.130 0.00 0.00 0.00 4.40
249 3905 3.246301 TCTTTCCAATCCCATTTTGCCA 58.754 40.909 0.00 0.00 0.00 4.92
250 3906 3.979101 TCTTTCCAATCCCATTTTGCC 57.021 42.857 0.00 0.00 0.00 4.52
251 3907 4.256110 CCTTCTTTCCAATCCCATTTTGC 58.744 43.478 0.00 0.00 0.00 3.68
252 3908 4.531732 TCCCTTCTTTCCAATCCCATTTTG 59.468 41.667 0.00 0.00 0.00 2.44
253 3909 4.762220 TCCCTTCTTTCCAATCCCATTTT 58.238 39.130 0.00 0.00 0.00 1.82
254 3910 4.202825 ACTCCCTTCTTTCCAATCCCATTT 60.203 41.667 0.00 0.00 0.00 2.32
255 3911 3.337909 ACTCCCTTCTTTCCAATCCCATT 59.662 43.478 0.00 0.00 0.00 3.16
256 3912 2.929043 ACTCCCTTCTTTCCAATCCCAT 59.071 45.455 0.00 0.00 0.00 4.00
257 3913 2.041620 CACTCCCTTCTTTCCAATCCCA 59.958 50.000 0.00 0.00 0.00 4.37
258 3914 2.308866 TCACTCCCTTCTTTCCAATCCC 59.691 50.000 0.00 0.00 0.00 3.85
259 3915 3.615155 CTCACTCCCTTCTTTCCAATCC 58.385 50.000 0.00 0.00 0.00 3.01
260 3916 3.615155 CCTCACTCCCTTCTTTCCAATC 58.385 50.000 0.00 0.00 0.00 2.67
261 3917 2.291217 GCCTCACTCCCTTCTTTCCAAT 60.291 50.000 0.00 0.00 0.00 3.16
262 3918 1.073923 GCCTCACTCCCTTCTTTCCAA 59.926 52.381 0.00 0.00 0.00 3.53
263 3919 0.693049 GCCTCACTCCCTTCTTTCCA 59.307 55.000 0.00 0.00 0.00 3.53
264 3920 0.391793 CGCCTCACTCCCTTCTTTCC 60.392 60.000 0.00 0.00 0.00 3.13
265 3921 0.391793 CCGCCTCACTCCCTTCTTTC 60.392 60.000 0.00 0.00 0.00 2.62
266 3922 1.679898 CCGCCTCACTCCCTTCTTT 59.320 57.895 0.00 0.00 0.00 2.52
267 3923 2.294078 CCCGCCTCACTCCCTTCTT 61.294 63.158 0.00 0.00 0.00 2.52
268 3924 2.685380 CCCGCCTCACTCCCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
269 3925 4.475135 GCCCGCCTCACTCCCTTC 62.475 72.222 0.00 0.00 0.00 3.46
287 3943 3.757248 CTGATTTCTCCCCGGGGCG 62.757 68.421 36.68 30.66 34.68 6.13
288 3944 2.193248 CTGATTTCTCCCCGGGGC 59.807 66.667 36.68 20.35 34.68 5.80
289 3945 2.757124 CCCTGATTTCTCCCCGGGG 61.757 68.421 35.80 35.80 39.87 5.73
290 3946 2.757124 CCCCTGATTTCTCCCCGGG 61.757 68.421 15.80 15.80 0.00 5.73
291 3947 2.757124 CCCCCTGATTTCTCCCCGG 61.757 68.421 0.00 0.00 0.00 5.73
292 3948 2.919043 CCCCCTGATTTCTCCCCG 59.081 66.667 0.00 0.00 0.00 5.73
307 3963 3.945981 TCGTTAAATTTCTTTGCCCCC 57.054 42.857 0.00 0.00 0.00 5.40
308 3964 4.242475 CCTTCGTTAAATTTCTTTGCCCC 58.758 43.478 0.00 0.00 0.00 5.80
309 3965 4.242475 CCCTTCGTTAAATTTCTTTGCCC 58.758 43.478 0.00 0.00 0.00 5.36
310 3966 3.678072 GCCCTTCGTTAAATTTCTTTGCC 59.322 43.478 0.00 0.00 0.00 4.52
311 3967 3.678072 GGCCCTTCGTTAAATTTCTTTGC 59.322 43.478 0.00 0.00 0.00 3.68
312 3968 4.242475 GGGCCCTTCGTTAAATTTCTTTG 58.758 43.478 17.04 0.00 0.00 2.77
313 3969 3.259876 GGGGCCCTTCGTTAAATTTCTTT 59.740 43.478 24.38 0.00 0.00 2.52
314 3970 2.829720 GGGGCCCTTCGTTAAATTTCTT 59.170 45.455 24.38 0.00 0.00 2.52
315 3971 2.453521 GGGGCCCTTCGTTAAATTTCT 58.546 47.619 24.38 0.00 0.00 2.52
316 3972 1.133598 CGGGGCCCTTCGTTAAATTTC 59.866 52.381 24.38 0.00 0.00 2.17
317 3973 1.179152 CGGGGCCCTTCGTTAAATTT 58.821 50.000 24.38 0.00 0.00 1.82
318 3974 0.038599 ACGGGGCCCTTCGTTAAATT 59.961 50.000 24.38 0.00 36.04 1.82
319 3975 0.911053 TACGGGGCCCTTCGTTAAAT 59.089 50.000 27.77 8.33 40.31 1.40
320 3976 0.689623 TTACGGGGCCCTTCGTTAAA 59.310 50.000 27.77 16.05 40.31 1.52
321 3977 0.689623 TTTACGGGGCCCTTCGTTAA 59.310 50.000 27.77 22.34 40.31 2.01
322 3978 0.036483 GTTTACGGGGCCCTTCGTTA 60.036 55.000 27.77 18.11 40.31 3.18
323 3979 1.302752 GTTTACGGGGCCCTTCGTT 60.303 57.895 27.77 14.07 40.31 3.85
324 3980 2.219164 AGTTTACGGGGCCCTTCGT 61.219 57.895 26.23 26.23 42.55 3.85
325 3981 1.743995 CAGTTTACGGGGCCCTTCG 60.744 63.158 24.38 20.67 0.00 3.79
326 3982 2.044555 GCAGTTTACGGGGCCCTTC 61.045 63.158 24.38 4.51 0.00 3.46
327 3983 2.035155 GCAGTTTACGGGGCCCTT 59.965 61.111 24.38 15.09 0.00 3.95
328 3984 4.043100 GGCAGTTTACGGGGCCCT 62.043 66.667 24.38 10.47 40.55 5.19
330 3986 2.187896 TACAGGCAGTTTACGGGGCC 62.188 60.000 0.00 0.00 46.77 5.80
331 3987 0.321830 TTACAGGCAGTTTACGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
332 3988 1.270947 TGTTACAGGCAGTTTACGGGG 60.271 52.381 0.00 0.00 0.00 5.73
333 3989 2.172851 TGTTACAGGCAGTTTACGGG 57.827 50.000 0.00 0.00 0.00 5.28
334 3990 2.095919 GCTTGTTACAGGCAGTTTACGG 60.096 50.000 14.55 0.00 36.46 4.02
335 3991 2.095919 GGCTTGTTACAGGCAGTTTACG 60.096 50.000 20.45 0.00 38.23 3.18
336 3992 2.228103 GGGCTTGTTACAGGCAGTTTAC 59.772 50.000 20.45 2.51 41.20 2.01
337 3993 2.510613 GGGCTTGTTACAGGCAGTTTA 58.489 47.619 20.45 0.00 41.20 2.01
338 3994 1.328279 GGGCTTGTTACAGGCAGTTT 58.672 50.000 20.45 0.00 41.20 2.66
339 3995 0.889186 CGGGCTTGTTACAGGCAGTT 60.889 55.000 20.45 0.00 41.20 3.16
340 3996 1.302511 CGGGCTTGTTACAGGCAGT 60.303 57.895 20.45 0.00 41.20 4.40
341 3997 0.036765 TACGGGCTTGTTACAGGCAG 60.037 55.000 20.45 15.37 41.20 4.85
342 3998 0.616371 ATACGGGCTTGTTACAGGCA 59.384 50.000 20.45 0.74 41.20 4.75
343 3999 1.014352 CATACGGGCTTGTTACAGGC 58.986 55.000 11.11 11.11 38.65 4.85
344 4000 2.093658 AGACATACGGGCTTGTTACAGG 60.094 50.000 0.00 0.00 0.00 4.00
345 4001 3.247006 AGACATACGGGCTTGTTACAG 57.753 47.619 0.00 0.00 0.00 2.74
346 4002 3.131577 CCTAGACATACGGGCTTGTTACA 59.868 47.826 0.00 0.00 0.00 2.41
347 4003 3.382546 TCCTAGACATACGGGCTTGTTAC 59.617 47.826 0.00 0.00 0.00 2.50
348 4004 3.634504 TCCTAGACATACGGGCTTGTTA 58.365 45.455 0.00 0.00 0.00 2.41
349 4005 2.463752 TCCTAGACATACGGGCTTGTT 58.536 47.619 0.00 0.00 0.00 2.83
350 4006 2.154567 TCCTAGACATACGGGCTTGT 57.845 50.000 0.00 0.00 0.00 3.16
351 4007 3.753294 AATCCTAGACATACGGGCTTG 57.247 47.619 0.00 0.00 0.00 4.01
352 4008 5.794894 CAATAATCCTAGACATACGGGCTT 58.205 41.667 0.00 0.00 0.00 4.35
353 4009 4.322801 GCAATAATCCTAGACATACGGGCT 60.323 45.833 0.00 0.00 0.00 5.19
354 4010 3.933332 GCAATAATCCTAGACATACGGGC 59.067 47.826 0.00 0.00 0.00 6.13
355 4011 5.407407 AGCAATAATCCTAGACATACGGG 57.593 43.478 0.00 0.00 0.00 5.28
366 4022 9.672673 ATCGTTAGCAATAATAGCAATAATCCT 57.327 29.630 0.00 0.00 0.00 3.24
367 4023 9.922305 GATCGTTAGCAATAATAGCAATAATCC 57.078 33.333 0.00 0.00 0.00 3.01
371 4027 8.432359 CGTTGATCGTTAGCAATAATAGCAATA 58.568 33.333 0.00 0.00 32.78 1.90
372 4028 7.290842 CGTTGATCGTTAGCAATAATAGCAAT 58.709 34.615 0.00 0.00 32.78 3.56
373 4029 6.645705 CGTTGATCGTTAGCAATAATAGCAA 58.354 36.000 0.00 0.00 32.78 3.91
374 4030 5.333035 GCGTTGATCGTTAGCAATAATAGCA 60.333 40.000 0.00 0.00 42.13 3.49
375 4031 5.073478 GCGTTGATCGTTAGCAATAATAGC 58.927 41.667 0.00 0.00 42.13 2.97
376 4032 6.065153 GTGCGTTGATCGTTAGCAATAATAG 58.935 40.000 6.55 0.00 39.67 1.73
377 4033 5.520649 TGTGCGTTGATCGTTAGCAATAATA 59.479 36.000 6.55 0.00 39.67 0.98
378 4034 4.331443 TGTGCGTTGATCGTTAGCAATAAT 59.669 37.500 6.55 0.00 39.67 1.28
379 4035 3.680458 TGTGCGTTGATCGTTAGCAATAA 59.320 39.130 6.55 0.00 39.67 1.40
380 4036 3.254892 TGTGCGTTGATCGTTAGCAATA 58.745 40.909 6.55 0.00 39.67 1.90
392 4048 0.172127 TTGCTGCTTTTGTGCGTTGA 59.828 45.000 0.00 0.00 35.36 3.18
394 4050 0.998669 GTTTGCTGCTTTTGTGCGTT 59.001 45.000 0.00 0.00 35.36 4.84
501 4175 1.607148 GGGTAGTGTGTTGAAGTTGGC 59.393 52.381 0.00 0.00 0.00 4.52
503 4177 5.277154 CGTTTAGGGTAGTGTGTTGAAGTTG 60.277 44.000 0.00 0.00 0.00 3.16
504 4178 4.812626 CGTTTAGGGTAGTGTGTTGAAGTT 59.187 41.667 0.00 0.00 0.00 2.66
505 4179 4.374399 CGTTTAGGGTAGTGTGTTGAAGT 58.626 43.478 0.00 0.00 0.00 3.01
506 4180 3.744426 CCGTTTAGGGTAGTGTGTTGAAG 59.256 47.826 0.00 0.00 35.97 3.02
507 4181 3.387374 TCCGTTTAGGGTAGTGTGTTGAA 59.613 43.478 0.00 0.00 41.52 2.69
508 4182 2.964464 TCCGTTTAGGGTAGTGTGTTGA 59.036 45.455 0.00 0.00 41.52 3.18
509 4183 3.389925 TCCGTTTAGGGTAGTGTGTTG 57.610 47.619 0.00 0.00 41.52 3.33
510 4184 3.325716 ACATCCGTTTAGGGTAGTGTGTT 59.674 43.478 0.00 0.00 41.52 3.32
511 4185 2.901839 ACATCCGTTTAGGGTAGTGTGT 59.098 45.455 0.00 0.00 41.52 3.72
512 4186 3.194968 AGACATCCGTTTAGGGTAGTGTG 59.805 47.826 0.00 0.00 41.52 3.82
513 4187 3.194968 CAGACATCCGTTTAGGGTAGTGT 59.805 47.826 0.00 0.00 41.52 3.55
514 4188 3.194968 ACAGACATCCGTTTAGGGTAGTG 59.805 47.826 0.00 0.00 41.52 2.74
515 4189 3.438183 ACAGACATCCGTTTAGGGTAGT 58.562 45.455 0.00 0.00 41.52 2.73
516 4190 4.467198 AACAGACATCCGTTTAGGGTAG 57.533 45.455 0.00 0.00 41.52 3.18
517 4191 4.618927 CGAAACAGACATCCGTTTAGGGTA 60.619 45.833 0.00 0.00 41.52 3.69
518 4192 3.671716 GAAACAGACATCCGTTTAGGGT 58.328 45.455 0.00 0.00 41.52 4.34
519 4193 2.671396 CGAAACAGACATCCGTTTAGGG 59.329 50.000 0.00 0.00 41.52 3.53
520 4194 3.323243 ACGAAACAGACATCCGTTTAGG 58.677 45.455 0.00 0.17 35.53 2.69
521 4195 3.367025 GGACGAAACAGACATCCGTTTAG 59.633 47.826 0.00 0.00 35.53 1.85
522 4196 3.319755 GGACGAAACAGACATCCGTTTA 58.680 45.455 0.00 0.00 35.53 2.01
523 4197 2.140717 GGACGAAACAGACATCCGTTT 58.859 47.619 0.00 0.00 38.02 3.60
524 4198 1.792006 GGACGAAACAGACATCCGTT 58.208 50.000 0.00 0.00 33.32 4.44
525 4199 0.388134 CGGACGAAACAGACATCCGT 60.388 55.000 2.85 0.00 45.73 4.69
526 4200 2.359792 CGGACGAAACAGACATCCG 58.640 57.895 0.00 0.00 45.61 4.18
527 4201 0.739813 CCCGGACGAAACAGACATCC 60.740 60.000 0.73 0.00 0.00 3.51
528 4202 0.037605 ACCCGGACGAAACAGACATC 60.038 55.000 0.73 0.00 0.00 3.06
529 4203 0.395312 AACCCGGACGAAACAGACAT 59.605 50.000 0.73 0.00 0.00 3.06
530 4204 0.178533 AAACCCGGACGAAACAGACA 59.821 50.000 0.73 0.00 0.00 3.41
534 4208 1.970092 AATGAAACCCGGACGAAACA 58.030 45.000 0.73 0.00 0.00 2.83
539 4213 2.351350 CCAAAGAAATGAAACCCGGACG 60.351 50.000 0.73 0.00 0.00 4.79
543 4217 1.337728 GCCCCAAAGAAATGAAACCCG 60.338 52.381 0.00 0.00 0.00 5.28
546 4220 4.335400 TTCTGCCCCAAAGAAATGAAAC 57.665 40.909 0.00 0.00 30.79 2.78
550 4224 3.494251 CGTTTTTCTGCCCCAAAGAAATG 59.506 43.478 0.00 0.00 41.86 2.32
555 4229 1.036707 TCCGTTTTTCTGCCCCAAAG 58.963 50.000 0.00 0.00 0.00 2.77
572 4246 1.542472 CCATAAACAAACGGGGTGTCC 59.458 52.381 0.00 0.00 0.00 4.02
577 4251 2.362717 ACACAACCATAAACAAACGGGG 59.637 45.455 0.00 0.00 0.00 5.73
580 4254 4.223659 GGCTACACAACCATAAACAAACG 58.776 43.478 0.00 0.00 0.00 3.60
581 4255 4.223659 CGGCTACACAACCATAAACAAAC 58.776 43.478 0.00 0.00 0.00 2.93
582 4256 3.884091 ACGGCTACACAACCATAAACAAA 59.116 39.130 0.00 0.00 0.00 2.83
585 4259 2.093152 CGACGGCTACACAACCATAAAC 59.907 50.000 0.00 0.00 0.00 2.01
586 4260 2.029200 TCGACGGCTACACAACCATAAA 60.029 45.455 0.00 0.00 0.00 1.40
587 4261 1.545136 TCGACGGCTACACAACCATAA 59.455 47.619 0.00 0.00 0.00 1.90
589 4263 0.535335 ATCGACGGCTACACAACCAT 59.465 50.000 0.00 0.00 0.00 3.55
590 4264 0.389296 CATCGACGGCTACACAACCA 60.389 55.000 0.00 0.00 0.00 3.67
592 4267 0.713883 CACATCGACGGCTACACAAC 59.286 55.000 0.00 0.00 0.00 3.32
594 4269 1.445410 GCACATCGACGGCTACACA 60.445 57.895 0.00 0.00 0.00 3.72
598 4273 2.651105 TTGGGCACATCGACGGCTA 61.651 57.895 0.00 0.00 0.00 3.93
599 4274 4.015406 TTGGGCACATCGACGGCT 62.015 61.111 0.00 0.00 0.00 5.52
600 4275 3.799755 GTTGGGCACATCGACGGC 61.800 66.667 0.00 0.00 0.00 5.68
603 4278 2.358247 ACGGTTGGGCACATCGAC 60.358 61.111 17.26 0.00 0.00 4.20
610 4285 1.826054 CACTTTGGACGGTTGGGCA 60.826 57.895 0.00 0.00 0.00 5.36
611 4286 2.561037 CCACTTTGGACGGTTGGGC 61.561 63.158 0.00 0.00 40.96 5.36
620 4295 1.594833 CGATCGGACCCACTTTGGA 59.405 57.895 7.38 0.00 40.96 3.53
623 4298 2.267961 GGCGATCGGACCCACTTT 59.732 61.111 18.30 0.00 0.00 2.66
624 4299 3.782443 GGGCGATCGGACCCACTT 61.782 66.667 21.83 0.00 46.22 3.16
680 5683 4.124351 TCGGACCCGCATGTCGAC 62.124 66.667 9.11 9.11 41.67 4.20
681 5684 3.822192 CTCGGACCCGCATGTCGA 61.822 66.667 10.48 0.00 41.67 4.20
695 5698 2.329690 CGCTCCTCGTCCATCTCG 59.670 66.667 0.00 0.00 0.00 4.04
696 5699 2.725008 CCGCTCCTCGTCCATCTC 59.275 66.667 0.00 0.00 36.19 2.75
718 5721 1.069227 GGACAACAAATGGACGCTCAC 60.069 52.381 0.00 0.00 0.00 3.51
719 5722 1.234821 GGACAACAAATGGACGCTCA 58.765 50.000 0.00 0.00 0.00 4.26
720 5723 0.165944 CGGACAACAAATGGACGCTC 59.834 55.000 0.00 0.00 0.00 5.03
721 5724 0.534203 ACGGACAACAAATGGACGCT 60.534 50.000 0.00 0.00 36.23 5.07
722 5725 0.110373 GACGGACAACAAATGGACGC 60.110 55.000 0.00 0.00 36.23 5.19
723 5726 1.194547 CAGACGGACAACAAATGGACG 59.805 52.381 0.00 0.00 37.98 4.79
724 5727 2.223377 GTCAGACGGACAACAAATGGAC 59.777 50.000 0.42 0.00 46.19 4.02
725 5728 2.489971 GTCAGACGGACAACAAATGGA 58.510 47.619 0.42 0.00 46.19 3.41
726 5729 2.969443 GTCAGACGGACAACAAATGG 57.031 50.000 0.42 0.00 46.19 3.16
739 5742 0.307453 TGCAAACATGCGTGTCAGAC 59.693 50.000 12.96 3.33 37.67 3.51
740 5743 1.197492 GATGCAAACATGCGTGTCAGA 59.803 47.619 12.96 0.00 37.67 3.27
741 5744 1.609932 GATGCAAACATGCGTGTCAG 58.390 50.000 12.96 9.08 37.67 3.51
742 5745 0.110283 CGATGCAAACATGCGTGTCA 60.110 50.000 12.96 6.71 37.67 3.58
743 5746 0.165727 TCGATGCAAACATGCGTGTC 59.834 50.000 12.96 0.19 37.67 3.67
744 5747 0.590682 TTCGATGCAAACATGCGTGT 59.409 45.000 5.51 5.51 41.28 4.49
745 5748 1.684142 TTTCGATGCAAACATGCGTG 58.316 45.000 3.82 3.82 36.35 5.34
746 5749 2.414058 TTTTCGATGCAAACATGCGT 57.586 40.000 0.00 0.00 36.35 5.24
747 5750 2.028284 CCATTTTCGATGCAAACATGCG 59.972 45.455 0.00 0.00 36.35 4.73
748 5751 2.349275 CCCATTTTCGATGCAAACATGC 59.651 45.455 0.00 0.00 36.35 4.06
749 5752 3.587923 ACCCATTTTCGATGCAAACATG 58.412 40.909 0.00 0.00 36.35 3.21
750 5753 3.673052 CGACCCATTTTCGATGCAAACAT 60.673 43.478 0.00 0.00 38.85 2.71
751 5754 2.351253 CGACCCATTTTCGATGCAAACA 60.351 45.455 0.00 0.00 38.85 2.83
752 5755 2.095466 TCGACCCATTTTCGATGCAAAC 60.095 45.455 0.00 0.00 40.51 2.93
753 5756 2.155279 TCGACCCATTTTCGATGCAAA 58.845 42.857 0.00 0.00 40.51 3.68
754 5757 1.737236 CTCGACCCATTTTCGATGCAA 59.263 47.619 0.00 0.00 44.18 4.08
755 5758 1.338674 ACTCGACCCATTTTCGATGCA 60.339 47.619 0.00 0.00 44.18 3.96
756 5759 1.327764 GACTCGACCCATTTTCGATGC 59.672 52.381 0.00 0.00 44.18 3.91
757 5760 1.588404 CGACTCGACCCATTTTCGATG 59.412 52.381 0.00 0.00 44.18 3.84
758 5761 1.470979 CCGACTCGACCCATTTTCGAT 60.471 52.381 0.00 0.00 44.18 3.59
759 5762 0.108992 CCGACTCGACCCATTTTCGA 60.109 55.000 0.00 0.00 43.07 3.71
760 5763 0.108992 TCCGACTCGACCCATTTTCG 60.109 55.000 0.00 0.00 37.85 3.46
761 5764 1.067071 AGTCCGACTCGACCCATTTTC 60.067 52.381 0.00 0.00 32.91 2.29
762 5765 0.974383 AGTCCGACTCGACCCATTTT 59.026 50.000 0.00 0.00 32.91 1.82
763 5766 0.531200 GAGTCCGACTCGACCCATTT 59.469 55.000 12.74 0.00 35.28 2.32
764 5767 2.190756 GAGTCCGACTCGACCCATT 58.809 57.895 12.74 0.00 35.28 3.16
765 5768 3.921521 GAGTCCGACTCGACCCAT 58.078 61.111 12.74 0.00 35.28 4.00
794 5797 2.159448 CGCGCAACCTCATCCATAAAAA 60.159 45.455 8.75 0.00 0.00 1.94
795 5798 1.400142 CGCGCAACCTCATCCATAAAA 59.600 47.619 8.75 0.00 0.00 1.52
796 5799 1.013596 CGCGCAACCTCATCCATAAA 58.986 50.000 8.75 0.00 0.00 1.40
797 5800 0.107897 ACGCGCAACCTCATCCATAA 60.108 50.000 5.73 0.00 0.00 1.90
798 5801 0.107897 AACGCGCAACCTCATCCATA 60.108 50.000 5.73 0.00 0.00 2.74
799 5802 1.377202 AACGCGCAACCTCATCCAT 60.377 52.632 5.73 0.00 0.00 3.41
800 5803 2.031919 AACGCGCAACCTCATCCA 59.968 55.556 5.73 0.00 0.00 3.41
801 5804 2.480555 CAACGCGCAACCTCATCC 59.519 61.111 5.73 0.00 0.00 3.51
802 5805 2.032634 TCCAACGCGCAACCTCATC 61.033 57.895 5.73 0.00 0.00 2.92
803 5806 2.031919 TCCAACGCGCAACCTCAT 59.968 55.556 5.73 0.00 0.00 2.90
804 5807 2.970324 GTCCAACGCGCAACCTCA 60.970 61.111 5.73 0.00 0.00 3.86
805 5808 2.665185 AGTCCAACGCGCAACCTC 60.665 61.111 5.73 0.00 0.00 3.85
806 5809 2.972505 CAGTCCAACGCGCAACCT 60.973 61.111 5.73 0.00 0.00 3.50
807 5810 3.236618 GACAGTCCAACGCGCAACC 62.237 63.158 5.73 0.00 0.00 3.77
808 5811 2.159272 GAGACAGTCCAACGCGCAAC 62.159 60.000 5.73 0.00 0.00 4.17
809 5812 1.954146 GAGACAGTCCAACGCGCAA 60.954 57.895 5.73 0.00 0.00 4.85
810 5813 2.355837 GAGACAGTCCAACGCGCA 60.356 61.111 5.73 0.00 0.00 6.09
811 5814 3.112709 GGAGACAGTCCAACGCGC 61.113 66.667 5.73 0.00 46.10 6.86
822 5825 0.679505 CCAAACGGACAGAGGAGACA 59.320 55.000 0.00 0.00 0.00 3.41
827 5830 2.359975 GGCCCAAACGGACAGAGG 60.360 66.667 0.00 0.00 40.87 3.69
860 5863 2.258726 GGCCAACTCCAACGACCAC 61.259 63.158 0.00 0.00 0.00 4.16
861 5864 1.990160 AAGGCCAACTCCAACGACCA 61.990 55.000 5.01 0.00 0.00 4.02
1448 6495 2.391389 GGAAGAACCGCTGGCGAAG 61.391 63.158 16.79 3.19 42.83 3.79
1491 6539 2.412089 GCACAGATCGTACCACTCAAAC 59.588 50.000 0.00 0.00 0.00 2.93
1628 6676 4.845580 ATTGCCGCTCTGCTCCGG 62.846 66.667 0.00 0.00 46.94 5.14
1629 6677 3.267860 GATTGCCGCTCTGCTCCG 61.268 66.667 0.00 0.00 0.00 4.63
1630 6678 2.899339 GGATTGCCGCTCTGCTCC 60.899 66.667 0.00 0.00 0.00 4.70
1631 6679 2.124983 TGGATTGCCGCTCTGCTC 60.125 61.111 0.00 0.00 36.79 4.26
1632 6680 2.124819 CTGGATTGCCGCTCTGCT 60.125 61.111 0.00 0.00 36.79 4.24
1633 6681 0.744414 TAACTGGATTGCCGCTCTGC 60.744 55.000 0.00 0.00 36.79 4.26
1634 6682 1.293924 CTAACTGGATTGCCGCTCTG 58.706 55.000 0.00 0.00 36.79 3.35
1635 6683 0.179000 CCTAACTGGATTGCCGCTCT 59.821 55.000 0.00 0.00 38.35 4.09
1636 6684 0.815615 CCCTAACTGGATTGCCGCTC 60.816 60.000 0.00 0.00 38.35 5.03
1637 6685 1.224592 CCCTAACTGGATTGCCGCT 59.775 57.895 0.00 0.00 38.35 5.52
1638 6686 0.815615 CTCCCTAACTGGATTGCCGC 60.816 60.000 0.00 0.00 38.35 6.53
1639 6687 0.815615 GCTCCCTAACTGGATTGCCG 60.816 60.000 0.00 0.00 38.35 5.69
1640 6688 0.815615 CGCTCCCTAACTGGATTGCC 60.816 60.000 0.00 0.00 38.35 4.52
1641 6689 0.107654 ACGCTCCCTAACTGGATTGC 60.108 55.000 0.00 0.00 38.35 3.56
1642 6690 2.280628 GAACGCTCCCTAACTGGATTG 58.719 52.381 0.00 0.00 38.35 2.67
1643 6691 1.134788 CGAACGCTCCCTAACTGGATT 60.135 52.381 0.00 0.00 38.35 3.01
1644 6692 0.460311 CGAACGCTCCCTAACTGGAT 59.540 55.000 0.00 0.00 38.35 3.41
1645 6693 1.601419 CCGAACGCTCCCTAACTGGA 61.601 60.000 0.00 0.00 38.35 3.86
1646 6694 1.153628 CCGAACGCTCCCTAACTGG 60.154 63.158 0.00 0.00 0.00 4.00
1647 6695 0.245539 TTCCGAACGCTCCCTAACTG 59.754 55.000 0.00 0.00 0.00 3.16
1648 6696 1.136500 GATTCCGAACGCTCCCTAACT 59.864 52.381 0.00 0.00 0.00 2.24
1649 6697 1.568606 GATTCCGAACGCTCCCTAAC 58.431 55.000 0.00 0.00 0.00 2.34
1650 6698 0.462789 GGATTCCGAACGCTCCCTAA 59.537 55.000 0.00 0.00 0.00 2.69
1651 6699 1.397390 GGGATTCCGAACGCTCCCTA 61.397 60.000 10.09 0.00 43.45 3.53
1652 6700 2.732619 GGGATTCCGAACGCTCCCT 61.733 63.158 10.09 0.00 43.45 4.20
1653 6701 2.203029 GGGATTCCGAACGCTCCC 60.203 66.667 3.05 3.05 40.60 4.30
1654 6702 1.227292 GAGGGATTCCGAACGCTCC 60.227 63.158 12.64 4.39 39.20 4.70
1655 6703 1.227292 GGAGGGATTCCGAACGCTC 60.227 63.158 14.16 14.16 42.58 5.03
1656 6704 2.901042 GGAGGGATTCCGAACGCT 59.099 61.111 0.00 0.00 35.91 5.07
1663 6711 0.548510 CTTGGGAGTGGAGGGATTCC 59.451 60.000 0.00 0.00 46.98 3.01
1664 6712 1.210722 GACTTGGGAGTGGAGGGATTC 59.789 57.143 0.00 0.00 35.88 2.52
1665 6713 1.290134 GACTTGGGAGTGGAGGGATT 58.710 55.000 0.00 0.00 35.88 3.01
1666 6714 0.119155 TGACTTGGGAGTGGAGGGAT 59.881 55.000 0.00 0.00 35.88 3.85
1667 6715 0.545309 CTGACTTGGGAGTGGAGGGA 60.545 60.000 0.00 0.00 35.88 4.20
1668 6716 1.986413 CTGACTTGGGAGTGGAGGG 59.014 63.158 0.00 0.00 35.88 4.30
1669 6717 1.197430 AGCTGACTTGGGAGTGGAGG 61.197 60.000 0.00 0.00 35.88 4.30
1670 6718 0.248843 GAGCTGACTTGGGAGTGGAG 59.751 60.000 0.00 0.00 35.88 3.86
1671 6719 1.536073 CGAGCTGACTTGGGAGTGGA 61.536 60.000 0.00 0.00 35.88 4.02
1672 6720 1.079543 CGAGCTGACTTGGGAGTGG 60.080 63.158 0.00 0.00 35.88 4.00
1673 6721 1.739562 GCGAGCTGACTTGGGAGTG 60.740 63.158 0.00 0.00 35.88 3.51
1674 6722 2.659610 GCGAGCTGACTTGGGAGT 59.340 61.111 0.00 0.00 39.32 3.85
1675 6723 2.507992 CGCGAGCTGACTTGGGAG 60.508 66.667 0.00 0.00 41.70 4.30
1676 6724 4.069232 CCGCGAGCTGACTTGGGA 62.069 66.667 8.23 0.00 41.70 4.37
1677 6725 3.997064 CTCCGCGAGCTGACTTGGG 62.997 68.421 8.23 0.00 39.44 4.12
1678 6726 2.507992 CTCCGCGAGCTGACTTGG 60.508 66.667 8.23 0.00 0.00 3.61
1704 6752 1.247567 TTACCTTTTCAGCCTGCAGC 58.752 50.000 8.66 3.91 44.25 5.25
1705 6753 2.352127 GCTTTACCTTTTCAGCCTGCAG 60.352 50.000 6.78 6.78 0.00 4.41
1706 6754 1.613437 GCTTTACCTTTTCAGCCTGCA 59.387 47.619 0.00 0.00 0.00 4.41
1707 6755 1.889170 AGCTTTACCTTTTCAGCCTGC 59.111 47.619 0.00 0.00 32.25 4.85
1708 6756 3.149196 TCAGCTTTACCTTTTCAGCCTG 58.851 45.455 0.00 0.00 32.25 4.85
1709 6757 3.073062 TCTCAGCTTTACCTTTTCAGCCT 59.927 43.478 0.00 0.00 32.25 4.58
1710 6758 3.412386 TCTCAGCTTTACCTTTTCAGCC 58.588 45.455 0.00 0.00 32.25 4.85
1711 6759 6.934048 ATATCTCAGCTTTACCTTTTCAGC 57.066 37.500 0.00 0.00 0.00 4.26
1712 6760 7.306866 GCGTATATCTCAGCTTTACCTTTTCAG 60.307 40.741 0.00 0.00 0.00 3.02
1713 6761 6.479001 GCGTATATCTCAGCTTTACCTTTTCA 59.521 38.462 0.00 0.00 0.00 2.69
1714 6762 6.345882 CGCGTATATCTCAGCTTTACCTTTTC 60.346 42.308 0.00 0.00 0.00 2.29
1715 6763 5.462398 CGCGTATATCTCAGCTTTACCTTTT 59.538 40.000 0.00 0.00 0.00 2.27
1716 6764 4.982916 CGCGTATATCTCAGCTTTACCTTT 59.017 41.667 0.00 0.00 0.00 3.11
1717 6765 4.547532 CGCGTATATCTCAGCTTTACCTT 58.452 43.478 0.00 0.00 0.00 3.50
1718 6766 3.612004 GCGCGTATATCTCAGCTTTACCT 60.612 47.826 8.43 0.00 0.00 3.08
1719 6767 2.662156 GCGCGTATATCTCAGCTTTACC 59.338 50.000 8.43 0.00 0.00 2.85
1720 6768 3.566523 AGCGCGTATATCTCAGCTTTAC 58.433 45.455 8.43 0.00 0.00 2.01
1721 6769 3.366070 GGAGCGCGTATATCTCAGCTTTA 60.366 47.826 8.43 0.00 34.85 1.85
1722 6770 2.608261 GGAGCGCGTATATCTCAGCTTT 60.608 50.000 8.43 0.00 34.85 3.51
1723 6771 1.068194 GGAGCGCGTATATCTCAGCTT 60.068 52.381 8.43 0.00 34.85 3.74
1724 6772 0.523966 GGAGCGCGTATATCTCAGCT 59.476 55.000 8.43 0.00 37.69 4.24
1725 6773 0.794981 CGGAGCGCGTATATCTCAGC 60.795 60.000 8.43 0.00 0.00 4.26
1726 6774 3.298126 CGGAGCGCGTATATCTCAG 57.702 57.895 8.43 1.92 0.00 3.35
1745 6793 2.588314 GCCAGCTCCGCAGATCTG 60.588 66.667 18.84 18.84 36.25 2.90
1746 6794 4.218578 CGCCAGCTCCGCAGATCT 62.219 66.667 3.36 0.00 0.00 2.75
1769 6817 3.128068 GTGTAAATTAAGGGCCTGTTCGG 59.872 47.826 6.92 0.00 0.00 4.30
1770 6818 3.128068 GGTGTAAATTAAGGGCCTGTTCG 59.872 47.826 6.92 0.00 0.00 3.95
1771 6819 4.083565 TGGTGTAAATTAAGGGCCTGTTC 58.916 43.478 6.92 0.00 0.00 3.18
1772 6820 4.120946 TGGTGTAAATTAAGGGCCTGTT 57.879 40.909 6.92 0.00 0.00 3.16
1773 6821 3.818295 TGGTGTAAATTAAGGGCCTGT 57.182 42.857 6.92 0.00 0.00 4.00
1774 6822 6.976934 ATTATGGTGTAAATTAAGGGCCTG 57.023 37.500 6.92 0.00 0.00 4.85
1775 6823 7.988249 AAATTATGGTGTAAATTAAGGGCCT 57.012 32.000 0.00 0.00 0.00 5.19
1776 6824 9.758651 CTTAAATTATGGTGTAAATTAAGGGCC 57.241 33.333 0.00 0.00 0.00 5.80
1777 6825 9.758651 CCTTAAATTATGGTGTAAATTAAGGGC 57.241 33.333 18.25 0.00 31.23 5.19
1784 6832 9.541884 ACCAACTCCTTAAATTATGGTGTAAAT 57.458 29.630 11.39 0.00 38.22 1.40
1785 6833 8.943594 ACCAACTCCTTAAATTATGGTGTAAA 57.056 30.769 11.39 0.00 38.22 2.01
1786 6834 8.943594 AACCAACTCCTTAAATTATGGTGTAA 57.056 30.769 11.39 0.00 39.50 2.41
1788 6836 8.943594 TTAACCAACTCCTTAAATTATGGTGT 57.056 30.769 6.77 6.77 39.50 4.16
1789 6837 9.634163 GTTTAACCAACTCCTTAAATTATGGTG 57.366 33.333 5.06 5.41 39.50 4.17
1790 6838 8.809066 GGTTTAACCAACTCCTTAAATTATGGT 58.191 33.333 9.56 0.00 41.23 3.55
1791 6839 8.255206 GGGTTTAACCAACTCCTTAAATTATGG 58.745 37.037 16.58 0.00 41.02 2.74
1803 6851 1.162698 GAGCGGGGTTTAACCAACTC 58.837 55.000 16.58 14.06 41.02 3.01
1804 6852 0.769247 AGAGCGGGGTTTAACCAACT 59.231 50.000 16.58 9.28 41.02 3.16
1805 6853 0.879090 CAGAGCGGGGTTTAACCAAC 59.121 55.000 16.58 7.19 41.02 3.77
1806 6854 0.891904 GCAGAGCGGGGTTTAACCAA 60.892 55.000 16.58 0.00 41.02 3.67
1807 6855 1.302993 GCAGAGCGGGGTTTAACCA 60.303 57.895 16.58 0.00 41.02 3.67
1808 6856 3.587095 GCAGAGCGGGGTTTAACC 58.413 61.111 5.40 5.40 37.60 2.85
1834 6882 2.687805 TTCGACAGTCCTCGCGGAG 61.688 63.158 6.13 2.01 40.84 4.63
1835 6883 2.670592 TTCGACAGTCCTCGCGGA 60.671 61.111 6.13 0.00 36.83 5.54
1836 6884 2.504244 GTTCGACAGTCCTCGCGG 60.504 66.667 6.13 0.00 33.47 6.46
1837 6885 2.870161 CGTTCGACAGTCCTCGCG 60.870 66.667 0.00 0.00 33.47 5.87
1838 6886 3.173240 GCGTTCGACAGTCCTCGC 61.173 66.667 13.26 13.26 37.17 5.03
1839 6887 2.870161 CGCGTTCGACAGTCCTCG 60.870 66.667 0.00 0.00 38.10 4.63
1840 6888 2.504244 CCGCGTTCGACAGTCCTC 60.504 66.667 4.92 0.00 38.10 3.71
1841 6889 4.719369 GCCGCGTTCGACAGTCCT 62.719 66.667 4.92 0.00 38.10 3.85
1843 6891 2.807631 TTAGGCCGCGTTCGACAGTC 62.808 60.000 4.92 0.00 38.10 3.51
1844 6892 2.814183 CTTAGGCCGCGTTCGACAGT 62.814 60.000 4.92 0.00 38.10 3.55
1845 6893 2.126228 TTAGGCCGCGTTCGACAG 60.126 61.111 4.92 0.00 38.10 3.51
1846 6894 2.126228 CTTAGGCCGCGTTCGACA 60.126 61.111 4.92 0.00 38.10 4.35
1847 6895 2.884207 CCTTAGGCCGCGTTCGAC 60.884 66.667 4.92 0.00 38.10 4.20
1848 6896 4.807039 GCCTTAGGCCGCGTTCGA 62.807 66.667 13.12 0.00 44.06 3.71
1864 6912 0.951558 TTTGAGAGACGGCTTTTGGC 59.048 50.000 0.00 0.00 42.14 4.52
1872 6920 5.098893 CAGTGACTCTAATTTGAGAGACGG 58.901 45.833 21.42 13.56 45.03 4.79
1885 6933 5.368256 GTTTTAGACGGACAGTGACTCTA 57.632 43.478 0.00 0.00 0.00 2.43
1886 6934 4.240175 GTTTTAGACGGACAGTGACTCT 57.760 45.455 0.00 0.00 0.00 3.24
1903 6951 5.751509 GTCCAGTTTGCTTAAATTCCGTTTT 59.248 36.000 0.00 0.00 0.00 2.43
1908 6956 7.440856 TCAATTTGTCCAGTTTGCTTAAATTCC 59.559 33.333 0.00 0.00 0.00 3.01
1917 6965 3.791245 TGGTTCAATTTGTCCAGTTTGC 58.209 40.909 10.34 0.00 0.00 3.68
1967 7598 2.902705 TAGTTTGAAGGCACGACACT 57.097 45.000 0.00 0.00 0.00 3.55
1980 7611 8.248253 AACCAAGGTTAGTTCAAACTTAGTTTG 58.752 33.333 26.53 26.53 41.25 2.93
1981 7612 7.949690 ACCAAGGTTAGTTCAAACTTAGTTT 57.050 32.000 4.30 4.30 42.48 2.66
2003 7635 2.844122 AAAGTGTCGCAGTTTGAACC 57.156 45.000 10.52 0.00 35.92 3.62
2054 7686 8.005466 GTCATGTGCACTTTTGTTAATGAAATG 58.995 33.333 19.41 7.95 0.00 2.32
2149 9398 2.230508 ACTTCTCGAAGCCACGAACATA 59.769 45.455 6.58 0.00 41.99 2.29
2150 9399 1.000955 ACTTCTCGAAGCCACGAACAT 59.999 47.619 6.58 0.00 41.99 2.71
2151 9400 0.387929 ACTTCTCGAAGCCACGAACA 59.612 50.000 6.58 0.00 41.99 3.18
2152 9401 0.784778 CACTTCTCGAAGCCACGAAC 59.215 55.000 6.58 0.00 41.99 3.95
2153 9402 0.671796 TCACTTCTCGAAGCCACGAA 59.328 50.000 6.58 0.00 41.99 3.85
2154 9403 0.671796 TTCACTTCTCGAAGCCACGA 59.328 50.000 6.58 3.06 41.99 4.35
2155 9404 1.063806 CTTCACTTCTCGAAGCCACG 58.936 55.000 6.58 0.00 41.99 4.94
2156 9405 2.156343 ACTTCACTTCTCGAAGCCAC 57.844 50.000 6.58 0.00 43.02 5.01
2157 9406 2.158957 ACAACTTCACTTCTCGAAGCCA 60.159 45.455 6.58 0.00 43.02 4.75
2158 9407 2.221981 CACAACTTCACTTCTCGAAGCC 59.778 50.000 6.58 0.00 43.02 4.35
2162 9411 1.760613 ACCCACAACTTCACTTCTCGA 59.239 47.619 0.00 0.00 0.00 4.04
2178 9427 3.158648 CCCCTCGCCGATTACCCA 61.159 66.667 0.00 0.00 0.00 4.51
2188 9437 1.829096 GTCCTACTCTCCCCCTCGC 60.829 68.421 0.00 0.00 0.00 5.03
2196 9445 1.405821 CGTGTCCCATGTCCTACTCTC 59.594 57.143 0.00 0.00 0.00 3.20
2198 9447 0.460311 CCGTGTCCCATGTCCTACTC 59.540 60.000 0.00 0.00 0.00 2.59
2222 9471 1.448540 CTCGTGCCTCATGTGGGAC 60.449 63.158 23.96 23.96 43.70 4.46
2223 9472 1.609210 TCTCGTGCCTCATGTGGGA 60.609 57.895 15.39 9.99 0.00 4.37
2250 9499 2.879646 GAGTAGAGGTGGGACATAGACG 59.120 54.545 0.00 0.00 44.52 4.18
2255 9504 2.316372 AGGAAGAGTAGAGGTGGGACAT 59.684 50.000 0.00 0.00 44.52 3.06
2275 9525 1.600013 CATACGACAGACTCCGGAGAG 59.400 57.143 37.69 26.06 46.36 3.20
2279 9529 2.190325 GTTCATACGACAGACTCCGG 57.810 55.000 0.00 0.00 0.00 5.14
2298 9548 2.222886 ACCTCATCTCGACCTATGACG 58.777 52.381 0.00 0.00 0.00 4.35
2303 9553 1.746171 CGTGGACCTCATCTCGACCTA 60.746 57.143 0.00 0.00 0.00 3.08
2304 9554 1.032657 CGTGGACCTCATCTCGACCT 61.033 60.000 0.00 0.00 0.00 3.85
2327 9577 2.286872 CAAGACCAGCTCATCCATGTC 58.713 52.381 0.00 0.00 0.00 3.06
2330 9580 1.064906 CCACAAGACCAGCTCATCCAT 60.065 52.381 0.00 0.00 0.00 3.41
2337 9587 0.532862 CAACGACCACAAGACCAGCT 60.533 55.000 0.00 0.00 0.00 4.24
2340 9590 1.885388 CGCAACGACCACAAGACCA 60.885 57.895 0.00 0.00 0.00 4.02
2362 9612 1.652563 GTTCACACGGTTCTTGCCC 59.347 57.895 0.00 0.00 0.00 5.36
2474 9724 0.389166 GAGACTGACGCCCTGTTCAG 60.389 60.000 0.00 0.00 34.15 3.02
2484 9734 3.978723 CTGCGGGCAGAGACTGACG 62.979 68.421 15.38 7.29 46.30 4.35
2508 9758 3.200593 GCGAGTGATGGCAGCTGG 61.201 66.667 17.12 0.00 0.00 4.85
2520 9770 4.373116 ACAACATCGGCCGCGAGT 62.373 61.111 23.51 15.85 0.00 4.18
2529 9779 4.799473 CGCAGCGCCACAACATCG 62.799 66.667 2.29 0.00 0.00 3.84
2542 9792 0.659427 CTGTACCAATCCATGCGCAG 59.341 55.000 18.32 8.11 0.00 5.18
2545 9795 1.643292 CGCTGTACCAATCCATGCG 59.357 57.895 0.00 0.00 36.19 4.73
2577 9828 1.227380 CGGAGAATTCAGGCTCCCG 60.227 63.158 8.44 6.62 46.32 5.14
2580 9831 1.141881 TCGCGGAGAATTCAGGCTC 59.858 57.895 6.13 0.00 0.00 4.70
2589 9840 4.467084 GGCCATGGTCGCGGAGAA 62.467 66.667 14.67 0.00 0.00 2.87
2696 9955 0.521735 GGTCTCCGTGTTTTGGATGC 59.478 55.000 0.00 0.00 34.32 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.