Multiple sequence alignment - TraesCS1A01G180600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G180600 chr1A 100.000 2602 0 0 1 2602 326215040 326217641 0.000000e+00 4806.0
1 TraesCS1A01G180600 chr1A 95.652 138 6 0 2081 2218 515766022 515766159 3.370000e-54 222.0
2 TraesCS1A01G180600 chr1A 93.243 148 10 0 2079 2226 438321641 438321788 4.360000e-53 219.0
3 TraesCS1A01G180600 chr1A 78.531 177 32 6 1272 1444 441844513 441844687 7.610000e-21 111.0
4 TraesCS1A01G180600 chr1B 81.275 1976 260 42 15 1940 358021453 358019538 0.000000e+00 1498.0
5 TraesCS1A01G180600 chr1B 96.341 328 11 1 2276 2602 358019460 358019133 2.950000e-149 538.0
6 TraesCS1A01G180600 chr1D 82.297 1576 190 36 10 1555 254611421 254612937 0.000000e+00 1282.0
7 TraesCS1A01G180600 chr1D 95.427 328 14 1 2276 2602 254615428 254615755 2.970000e-144 521.0
8 TraesCS1A01G180600 chr7A 96.296 135 5 0 2084 2218 138526583 138526449 3.370000e-54 222.0
9 TraesCS1A01G180600 chr7A 94.737 133 7 0 2085 2217 660451979 660452111 9.440000e-50 207.0
10 TraesCS1A01G180600 chr7B 96.269 134 5 0 2085 2218 650241742 650241875 1.210000e-53 220.0
11 TraesCS1A01G180600 chr6A 96.154 130 5 0 2087 2216 132950310 132950181 2.030000e-51 213.0
12 TraesCS1A01G180600 chr3A 96.124 129 5 0 2087 2215 564914604 564914732 7.300000e-51 211.0
13 TraesCS1A01G180600 chr6B 94.776 134 7 0 2085 2218 241540480 241540613 2.620000e-50 209.0
14 TraesCS1A01G180600 chr4A 94.776 134 7 0 2083 2216 14019800 14019667 2.620000e-50 209.0
15 TraesCS1A01G180600 chr7D 93.846 65 4 0 2217 2281 197879810 197879746 5.930000e-17 99.0
16 TraesCS1A01G180600 chr7D 93.750 64 4 0 2219 2282 596879359 596879422 2.130000e-16 97.1
17 TraesCS1A01G180600 chr5B 92.537 67 5 0 2216 2282 15222199 15222133 2.130000e-16 97.1
18 TraesCS1A01G180600 chr5A 96.491 57 2 0 2216 2272 476843009 476843065 7.670000e-16 95.3
19 TraesCS1A01G180600 chr5A 96.491 57 2 0 2216 2272 671556150 671556206 7.670000e-16 95.3
20 TraesCS1A01G180600 chr4B 96.491 57 2 0 2216 2272 387787994 387788050 7.670000e-16 95.3
21 TraesCS1A01G180600 chr5D 92.308 65 5 0 2217 2281 94027780 94027844 2.760000e-15 93.5
22 TraesCS1A01G180600 chr2A 92.308 65 5 0 2216 2280 448936673 448936609 2.760000e-15 93.5
23 TraesCS1A01G180600 chr2A 95.000 60 1 2 2216 2273 642916108 642916167 2.760000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G180600 chr1A 326215040 326217641 2601 False 4806.0 4806 100.000 1 2602 1 chr1A.!!$F1 2601
1 TraesCS1A01G180600 chr1B 358019133 358021453 2320 True 1018.0 1498 88.808 15 2602 2 chr1B.!!$R1 2587
2 TraesCS1A01G180600 chr1D 254611421 254615755 4334 False 901.5 1282 88.862 10 2602 2 chr1D.!!$F1 2592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 706 0.036732 TGCATGGATCCCGGCTATTC 59.963 55.0 21.25 0.0 0.0 1.75 F
706 720 0.040603 CTATTCGTCCGTCCGCCTAC 60.041 60.0 0.00 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1590 0.040870 CGAGATGAGGTCCACGATCG 60.041 60.0 14.88 14.88 31.76 3.69 R
2207 4459 0.107654 GCAATCCAGTTAGGGAGCGT 60.108 55.0 0.00 0.00 41.08 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.203153 AAACGCCACGCTTCTGGT 60.203 55.556 0.00 0.00 33.30 4.00
237 238 1.079503 GCGATTGCGACTCTTTCCTT 58.920 50.000 0.00 0.00 40.82 3.36
267 268 5.568620 AGAAGGGCATTTCTAATACGGAT 57.431 39.130 2.11 0.00 35.70 4.18
274 275 5.940470 GGCATTTCTAATACGGATCCTCAAT 59.060 40.000 10.75 0.00 0.00 2.57
276 277 7.301054 GCATTTCTAATACGGATCCTCAATTG 58.699 38.462 10.75 0.00 0.00 2.32
280 281 1.507140 TACGGATCCTCAATTGGCCT 58.493 50.000 10.75 0.00 0.00 5.19
283 284 1.450531 GGATCCTCAATTGGCCTGCG 61.451 60.000 3.84 0.00 0.00 5.18
287 288 0.819582 CCTCAATTGGCCTGCGAAAT 59.180 50.000 3.32 0.00 0.00 2.17
309 315 4.008933 GGGCAGTCCAGACGCACT 62.009 66.667 13.70 0.00 33.64 4.40
319 325 2.948979 TCCAGACGCACTTTTGTCATTT 59.051 40.909 0.00 0.00 37.58 2.32
323 329 6.428465 TCCAGACGCACTTTTGTCATTTAATA 59.572 34.615 0.00 0.00 37.58 0.98
335 341 9.544314 TTTTGTCATTTAATACGTATTTGTCCG 57.456 29.630 24.81 11.03 0.00 4.79
337 343 6.313164 TGTCATTTAATACGTATTTGTCCGCA 59.687 34.615 24.81 14.65 0.00 5.69
338 344 7.148457 TGTCATTTAATACGTATTTGTCCGCAA 60.148 33.333 24.81 9.38 0.00 4.85
341 347 3.644805 ATACGTATTTGTCCGCAAACG 57.355 42.857 1.14 0.00 45.99 3.60
342 348 1.219646 ACGTATTTGTCCGCAAACGT 58.780 45.000 4.91 4.91 45.99 3.99
343 349 1.070443 ACGTATTTGTCCGCAAACGTG 60.070 47.619 8.70 0.00 44.95 4.49
344 350 1.070443 CGTATTTGTCCGCAAACGTGT 60.070 47.619 0.00 0.00 45.99 4.49
345 351 2.567067 GTATTTGTCCGCAAACGTGTC 58.433 47.619 0.00 0.00 45.99 3.67
346 352 1.305201 ATTTGTCCGCAAACGTGTCT 58.695 45.000 0.00 0.00 45.99 3.41
347 353 0.375454 TTTGTCCGCAAACGTGTCTG 59.625 50.000 0.00 0.00 39.43 3.51
348 354 0.741574 TTGTCCGCAAACGTGTCTGT 60.742 50.000 0.00 0.00 37.70 3.41
349 355 0.102663 TGTCCGCAAACGTGTCTGTA 59.897 50.000 0.00 0.00 37.70 2.74
353 360 0.782384 CGCAAACGTGTCTGTAGTCC 59.218 55.000 0.00 0.00 33.53 3.85
359 366 2.735823 ACGTGTCTGTAGTCCGTTTTC 58.264 47.619 0.00 0.00 0.00 2.29
362 369 3.549423 CGTGTCTGTAGTCCGTTTTCTCA 60.549 47.826 0.00 0.00 0.00 3.27
392 399 1.403249 CGCAAATCAAGGGGAGCTTTG 60.403 52.381 0.00 0.00 31.57 2.77
393 400 1.673923 GCAAATCAAGGGGAGCTTTGC 60.674 52.381 2.97 2.97 41.57 3.68
396 403 0.251341 ATCAAGGGGAGCTTTGCGTT 60.251 50.000 0.00 0.00 0.00 4.84
405 412 0.179018 AGCTTTGCGTTTGGACCTCT 60.179 50.000 0.00 0.00 0.00 3.69
420 427 1.443872 CTCTGCCACGTACGTGTCC 60.444 63.158 37.86 29.53 44.02 4.02
438 445 2.874751 GGCAAACGGTCCCATTCG 59.125 61.111 0.00 0.00 0.00 3.34
448 457 0.618981 GTCCCATTCGAAACCCCTCT 59.381 55.000 0.00 0.00 0.00 3.69
450 459 0.618458 CCCATTCGAAACCCCTCTCA 59.382 55.000 0.00 0.00 0.00 3.27
467 476 0.321919 TCATGCAGACACTTGCCTCC 60.322 55.000 0.00 0.00 43.43 4.30
469 478 1.495579 ATGCAGACACTTGCCTCCCT 61.496 55.000 0.00 0.00 43.43 4.20
485 494 3.114616 CTTGTGCGACCGCTCCAG 61.115 66.667 15.61 9.21 42.51 3.86
506 515 2.045438 TCCCGCGCCACATTCATT 60.045 55.556 0.00 0.00 0.00 2.57
509 518 0.813610 CCCGCGCCACATTCATTCTA 60.814 55.000 0.00 0.00 0.00 2.10
510 519 0.304705 CCGCGCCACATTCATTCTAC 59.695 55.000 0.00 0.00 0.00 2.59
511 520 0.304705 CGCGCCACATTCATTCTACC 59.695 55.000 0.00 0.00 0.00 3.18
525 534 4.159135 TCATTCTACCGGTTTAGAGTGGAC 59.841 45.833 22.61 0.00 36.77 4.02
526 535 2.086869 TCTACCGGTTTAGAGTGGACG 58.913 52.381 15.04 0.00 0.00 4.79
545 554 2.434185 GACCGCTCCGCAACATGA 60.434 61.111 0.00 0.00 0.00 3.07
546 555 1.815421 GACCGCTCCGCAACATGAT 60.815 57.895 0.00 0.00 0.00 2.45
548 557 2.108514 CCGCTCCGCAACATGATGT 61.109 57.895 0.00 0.00 0.00 3.06
550 559 0.578683 CGCTCCGCAACATGATGTAG 59.421 55.000 0.00 0.00 0.00 2.74
552 561 1.594862 GCTCCGCAACATGATGTAGAC 59.405 52.381 0.00 0.00 0.00 2.59
577 586 2.281070 ACACACTGGCCAAGAGCG 60.281 61.111 7.01 0.00 45.17 5.03
578 587 2.281070 CACACTGGCCAAGAGCGT 60.281 61.111 7.01 0.00 45.17 5.07
580 589 2.743928 CACTGGCCAAGAGCGTCC 60.744 66.667 7.01 0.00 45.17 4.79
582 591 3.710722 CTGGCCAAGAGCGTCCCT 61.711 66.667 7.01 0.00 45.17 4.20
630 639 1.568612 CGCAGTGTTCAATGCCGTCT 61.569 55.000 17.25 0.00 39.30 4.18
639 648 1.159285 CAATGCCGTCTCAGAGCAAA 58.841 50.000 0.00 0.00 40.46 3.68
650 659 2.036992 CTCAGAGCAAAGTGACCAGACT 59.963 50.000 0.00 0.00 0.00 3.24
654 663 0.179018 GCAAAGTGACCAGACTGGGT 60.179 55.000 25.34 11.06 43.37 4.51
681 695 0.107456 CGGCTTCCTACTGCATGGAT 59.893 55.000 0.00 0.00 31.76 3.41
682 696 1.875576 CGGCTTCCTACTGCATGGATC 60.876 57.143 0.00 0.00 31.76 3.36
690 704 1.130054 ACTGCATGGATCCCGGCTAT 61.130 55.000 21.25 9.82 0.00 2.97
691 705 0.037303 CTGCATGGATCCCGGCTATT 59.963 55.000 21.25 0.00 0.00 1.73
692 706 0.036732 TGCATGGATCCCGGCTATTC 59.963 55.000 21.25 0.00 0.00 1.75
693 707 1.021390 GCATGGATCCCGGCTATTCG 61.021 60.000 9.90 0.00 0.00 3.34
694 708 0.321671 CATGGATCCCGGCTATTCGT 59.678 55.000 9.90 0.00 0.00 3.85
695 709 0.608640 ATGGATCCCGGCTATTCGTC 59.391 55.000 9.90 0.00 0.00 4.20
696 710 1.292541 GGATCCCGGCTATTCGTCC 59.707 63.158 0.00 0.00 0.00 4.79
697 711 1.080705 GATCCCGGCTATTCGTCCG 60.081 63.158 0.00 0.00 44.89 4.79
698 712 1.803366 GATCCCGGCTATTCGTCCGT 61.803 60.000 0.00 0.00 43.87 4.69
699 713 1.803366 ATCCCGGCTATTCGTCCGTC 61.803 60.000 0.00 0.00 43.87 4.79
700 714 2.027169 CCGGCTATTCGTCCGTCC 59.973 66.667 0.00 0.00 43.87 4.79
701 715 2.353145 CGGCTATTCGTCCGTCCG 60.353 66.667 0.00 0.00 40.72 4.79
702 716 2.657620 GGCTATTCGTCCGTCCGC 60.658 66.667 0.00 0.00 0.00 5.54
703 717 2.657620 GCTATTCGTCCGTCCGCC 60.658 66.667 0.00 0.00 0.00 6.13
704 718 3.117372 CTATTCGTCCGTCCGCCT 58.883 61.111 0.00 0.00 0.00 5.52
705 719 1.789078 GCTATTCGTCCGTCCGCCTA 61.789 60.000 0.00 0.00 0.00 3.93
706 720 0.040603 CTATTCGTCCGTCCGCCTAC 60.041 60.000 0.00 0.00 0.00 3.18
707 721 0.464373 TATTCGTCCGTCCGCCTACT 60.464 55.000 0.00 0.00 0.00 2.57
725 739 2.201732 ACTCGGCATATAACAAGTGCG 58.798 47.619 0.00 0.00 39.69 5.34
739 753 2.435938 TGCGCCATCCGAGAAACC 60.436 61.111 4.18 0.00 40.02 3.27
766 788 0.664166 CGCATTCAAACCGCTGCTTT 60.664 50.000 0.00 0.00 32.48 3.51
777 799 0.454600 CGCTGCTTTGCTTGATGGAT 59.545 50.000 0.00 0.00 0.00 3.41
781 803 0.822164 GCTTTGCTTGATGGATGCCT 59.178 50.000 0.00 0.00 0.00 4.75
782 804 1.470979 GCTTTGCTTGATGGATGCCTG 60.471 52.381 0.00 0.00 0.00 4.85
788 810 3.181441 TGCTTGATGGATGCCTGCTATAA 60.181 43.478 0.00 0.00 0.00 0.98
790 812 4.320788 GCTTGATGGATGCCTGCTATAAAC 60.321 45.833 0.00 0.00 0.00 2.01
793 815 2.560504 TGGATGCCTGCTATAAACACG 58.439 47.619 0.00 0.00 0.00 4.49
794 816 1.873591 GGATGCCTGCTATAAACACGG 59.126 52.381 0.00 0.00 0.00 4.94
795 817 2.561569 GATGCCTGCTATAAACACGGT 58.438 47.619 0.00 0.00 0.00 4.83
796 818 2.018542 TGCCTGCTATAAACACGGTC 57.981 50.000 0.00 0.00 0.00 4.79
797 819 0.928229 GCCTGCTATAAACACGGTCG 59.072 55.000 0.00 0.00 0.00 4.79
798 820 0.928229 CCTGCTATAAACACGGTCGC 59.072 55.000 0.00 0.00 0.00 5.19
811 835 2.642700 GTCGCGCACAACCCAAAT 59.357 55.556 8.75 0.00 0.00 2.32
838 862 1.203237 ACCTCTGCTTCTCCTTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
842 867 2.167281 TCTGCTTCTCCTTCCTCATTCG 59.833 50.000 0.00 0.00 0.00 3.34
856 881 0.460109 CATTCGTCCATGACCGCTGA 60.460 55.000 0.00 0.00 0.00 4.26
899 932 3.121030 CCGTGGAAGCGGCTCTTG 61.121 66.667 1.45 0.00 45.47 3.02
939 972 1.583495 GGCGGTCCTTGCTAACAACC 61.583 60.000 0.00 0.00 0.00 3.77
977 1011 1.961180 GCACATAGAGGGCGGACTGT 61.961 60.000 0.00 0.00 36.57 3.55
980 1014 0.671251 CATAGAGGGCGGACTGTCTC 59.329 60.000 7.85 0.00 0.00 3.36
988 1022 2.795297 GGACTGTCTCCGAGCTCG 59.205 66.667 29.06 29.06 39.44 5.03
997 1031 3.452786 CCGAGCTCGCTGGAGGAA 61.453 66.667 30.49 0.00 40.80 3.36
1000 1034 1.893786 GAGCTCGCTGGAGGAAAGA 59.106 57.895 0.00 0.00 40.80 2.52
1002 1036 0.177604 AGCTCGCTGGAGGAAAGATG 59.822 55.000 0.00 0.00 40.80 2.90
1011 1052 2.774234 TGGAGGAAAGATGGAGGATGAC 59.226 50.000 0.00 0.00 0.00 3.06
1016 1057 0.747255 AAGATGGAGGATGACGACCG 59.253 55.000 0.00 0.00 0.00 4.79
1020 1061 2.571757 GAGGATGACGACCGCACA 59.428 61.111 0.00 0.00 0.00 4.57
1028 1069 3.803082 CGACCGCACAATGCAGGG 61.803 66.667 13.56 5.27 45.36 4.45
1042 1083 2.125326 CAGGGGGCGTCTGACGATA 61.125 63.158 32.07 0.00 46.05 2.92
1046 1087 1.673808 GGGGCGTCTGACGATAAGGT 61.674 60.000 32.07 0.00 46.05 3.50
1063 1104 1.301479 GTCGAGCCCTCAACCGTTT 60.301 57.895 0.00 0.00 0.00 3.60
1070 1111 4.084888 CTCAACCGTTTCCGCGCC 62.085 66.667 0.00 0.00 0.00 6.53
1090 1131 0.605319 GGTTGTCGGCTTCACCATGA 60.605 55.000 0.00 0.00 39.03 3.07
1094 1135 3.853330 CGGCTTCACCATGACGCG 61.853 66.667 3.53 3.53 41.86 6.01
1126 1167 1.475403 CTCCGTCATGGTAGTGGAGT 58.525 55.000 0.00 0.00 41.04 3.85
1134 1175 0.708209 TGGTAGTGGAGTAGGAGCCA 59.292 55.000 0.00 0.00 0.00 4.75
1144 1185 1.072331 AGTAGGAGCCAACACAACCTG 59.928 52.381 0.00 0.00 32.90 4.00
1148 1189 1.076777 AGCCAACACAACCTGCACT 60.077 52.632 0.00 0.00 0.00 4.40
1171 1212 0.521735 GGTCTCCGTGTTTTGGATGC 59.478 55.000 0.00 0.00 34.32 3.91
1278 1327 4.467084 GGCCATGGTCGCGGAGAA 62.467 66.667 14.67 0.00 0.00 2.87
1287 1336 1.141881 TCGCGGAGAATTCAGGCTC 59.858 57.895 6.13 0.00 0.00 4.70
1290 1339 1.227380 CGGAGAATTCAGGCTCCCG 60.227 63.158 8.44 6.62 46.32 5.14
1322 1372 1.643292 CGCTGTACCAATCCATGCG 59.357 57.895 0.00 0.00 36.19 4.73
1325 1375 0.659427 CTGTACCAATCCATGCGCAG 59.341 55.000 18.32 8.11 0.00 5.18
1338 1388 4.799473 CGCAGCGCCACAACATCG 62.799 66.667 2.29 0.00 0.00 3.84
1347 1397 4.373116 ACAACATCGGCCGCGAGT 62.373 61.111 23.51 15.85 0.00 4.18
1359 1409 3.200593 GCGAGTGATGGCAGCTGG 61.201 66.667 17.12 0.00 0.00 4.85
1383 1433 3.978723 CTGCGGGCAGAGACTGACG 62.979 68.421 15.38 7.29 46.30 4.35
1393 1443 0.389166 GAGACTGACGCCCTGTTCAG 60.389 60.000 0.00 0.00 34.15 3.02
1505 1555 1.652563 GTTCACACGGTTCTTGCCC 59.347 57.895 0.00 0.00 0.00 5.36
1527 1577 1.885388 CGCAACGACCACAAGACCA 60.885 57.895 0.00 0.00 0.00 4.02
1530 1580 0.532862 CAACGACCACAAGACCAGCT 60.533 55.000 0.00 0.00 0.00 4.24
1537 1587 1.064906 CCACAAGACCAGCTCATCCAT 60.065 52.381 0.00 0.00 0.00 3.41
1540 1590 2.286872 CAAGACCAGCTCATCCATGTC 58.713 52.381 0.00 0.00 0.00 3.06
1563 1613 1.032657 CGTGGACCTCATCTCGACCT 61.033 60.000 0.00 0.00 0.00 3.85
1564 1614 1.746171 CGTGGACCTCATCTCGACCTA 60.746 57.143 0.00 0.00 0.00 3.08
1569 1619 2.222886 ACCTCATCTCGACCTATGACG 58.777 52.381 0.00 0.00 0.00 4.35
1588 1638 2.190325 GTTCATACGACAGACTCCGG 57.810 55.000 0.00 0.00 0.00 5.14
1592 1642 1.600013 CATACGACAGACTCCGGAGAG 59.400 57.143 37.69 26.06 46.36 3.20
1612 1663 2.316372 AGGAAGAGTAGAGGTGGGACAT 59.684 50.000 0.00 0.00 44.52 3.06
1617 1668 2.879646 GAGTAGAGGTGGGACATAGACG 59.120 54.545 0.00 0.00 44.52 4.18
1644 1695 1.609210 TCTCGTGCCTCATGTGGGA 60.609 57.895 15.39 9.99 0.00 4.37
1645 1696 1.448540 CTCGTGCCTCATGTGGGAC 60.449 63.158 23.96 23.96 43.70 4.46
1669 1720 0.460311 CCGTGTCCCATGTCCTACTC 59.540 60.000 0.00 0.00 0.00 2.59
1671 1722 1.405821 CGTGTCCCATGTCCTACTCTC 59.594 57.143 0.00 0.00 0.00 3.20
1679 1730 1.829096 GTCCTACTCTCCCCCTCGC 60.829 68.421 0.00 0.00 0.00 5.03
1689 1740 3.158648 CCCCTCGCCGATTACCCA 61.159 66.667 0.00 0.00 0.00 4.51
1704 1755 2.240493 ACCCACAACTTCACTTCTCG 57.760 50.000 0.00 0.00 0.00 4.04
1705 1756 1.760613 ACCCACAACTTCACTTCTCGA 59.239 47.619 0.00 0.00 0.00 4.04
1709 1760 2.221981 CACAACTTCACTTCTCGAAGCC 59.778 50.000 6.58 0.00 43.02 4.35
1710 1761 2.158957 ACAACTTCACTTCTCGAAGCCA 60.159 45.455 6.58 0.00 43.02 4.75
1711 1762 2.156343 ACTTCACTTCTCGAAGCCAC 57.844 50.000 6.58 0.00 43.02 5.01
1712 1763 1.063806 CTTCACTTCTCGAAGCCACG 58.936 55.000 6.58 0.00 41.99 4.94
1713 1764 0.671796 TTCACTTCTCGAAGCCACGA 59.328 50.000 6.58 3.06 41.99 4.35
1714 1765 0.671796 TCACTTCTCGAAGCCACGAA 59.328 50.000 6.58 0.00 41.99 3.85
1715 1766 0.784778 CACTTCTCGAAGCCACGAAC 59.215 55.000 6.58 0.00 41.99 3.95
1716 1767 0.387929 ACTTCTCGAAGCCACGAACA 59.612 50.000 6.58 0.00 41.99 3.18
1717 1768 1.000955 ACTTCTCGAAGCCACGAACAT 59.999 47.619 6.58 0.00 41.99 2.71
1718 1769 2.230508 ACTTCTCGAAGCCACGAACATA 59.769 45.455 6.58 0.00 41.99 2.29
1813 3481 8.005466 GTCATGTGCACTTTTGTTAATGAAATG 58.995 33.333 19.41 7.95 0.00 2.32
1864 3532 2.844122 AAAGTGTCGCAGTTTGAACC 57.156 45.000 10.52 0.00 35.92 3.62
1886 3555 7.949690 ACCAAGGTTAGTTCAAACTTAGTTT 57.050 32.000 4.30 4.30 42.48 2.66
1887 3556 8.248253 AACCAAGGTTAGTTCAAACTTAGTTTG 58.752 33.333 26.53 26.53 41.25 2.93
1900 3569 2.902705 TAGTTTGAAGGCACGACACT 57.097 45.000 0.00 0.00 0.00 3.55
1933 3602 4.098894 TCGGAGGGAGTATTAACTTGGTT 58.901 43.478 0.00 0.00 35.56 3.67
1950 4202 3.791245 TGGTTCAATTTGTCCAGTTTGC 58.209 40.909 10.34 0.00 0.00 3.68
1959 4211 7.440856 TCAATTTGTCCAGTTTGCTTAAATTCC 59.559 33.333 0.00 0.00 0.00 3.01
1964 4216 5.751509 GTCCAGTTTGCTTAAATTCCGTTTT 59.248 36.000 0.00 0.00 0.00 2.43
1981 4233 4.240175 GTTTTAGACGGACAGTGACTCT 57.760 45.455 0.00 0.00 0.00 3.24
1995 4247 5.098893 CAGTGACTCTAATTTGAGAGACGG 58.901 45.833 21.42 13.56 45.03 4.79
2019 4271 4.807039 GCCTTAGGCCGCGTTCGA 62.807 66.667 13.12 0.00 44.06 3.71
2020 4272 2.884207 CCTTAGGCCGCGTTCGAC 60.884 66.667 4.92 0.00 38.10 4.20
2021 4273 2.126228 CTTAGGCCGCGTTCGACA 60.126 61.111 4.92 0.00 38.10 4.35
2022 4274 2.126228 TTAGGCCGCGTTCGACAG 60.126 61.111 4.92 0.00 38.10 3.51
2023 4275 2.814183 CTTAGGCCGCGTTCGACAGT 62.814 60.000 4.92 0.00 38.10 3.55
2024 4276 2.807631 TTAGGCCGCGTTCGACAGTC 62.808 60.000 4.92 0.00 38.10 3.51
2026 4278 4.719369 GCCGCGTTCGACAGTCCT 62.719 66.667 4.92 0.00 38.10 3.85
2027 4279 2.504244 CCGCGTTCGACAGTCCTC 60.504 66.667 4.92 0.00 38.10 3.71
2028 4280 2.870161 CGCGTTCGACAGTCCTCG 60.870 66.667 0.00 0.00 38.10 4.63
2029 4281 3.173240 GCGTTCGACAGTCCTCGC 61.173 66.667 13.26 13.26 37.17 5.03
2030 4282 2.870161 CGTTCGACAGTCCTCGCG 60.870 66.667 0.00 0.00 33.47 5.87
2031 4283 2.504244 GTTCGACAGTCCTCGCGG 60.504 66.667 6.13 0.00 33.47 6.46
2032 4284 2.670592 TTCGACAGTCCTCGCGGA 60.671 61.111 6.13 0.00 36.83 5.54
2033 4285 2.687805 TTCGACAGTCCTCGCGGAG 61.688 63.158 6.13 2.01 40.84 4.63
2059 4311 3.587095 GCAGAGCGGGGTTTAACC 58.413 61.111 5.40 5.40 37.60 2.85
2060 4312 1.302993 GCAGAGCGGGGTTTAACCA 60.303 57.895 16.58 0.00 41.02 3.67
2061 4313 0.891904 GCAGAGCGGGGTTTAACCAA 60.892 55.000 16.58 0.00 41.02 3.67
2062 4314 0.879090 CAGAGCGGGGTTTAACCAAC 59.121 55.000 16.58 7.19 41.02 3.77
2063 4315 0.769247 AGAGCGGGGTTTAACCAACT 59.231 50.000 16.58 9.28 41.02 3.16
2064 4316 1.162698 GAGCGGGGTTTAACCAACTC 58.837 55.000 16.58 14.06 41.02 3.01
2076 4328 8.255206 GGGTTTAACCAACTCCTTAAATTATGG 58.745 37.037 16.58 0.00 41.02 2.74
2077 4329 8.809066 GGTTTAACCAACTCCTTAAATTATGGT 58.191 33.333 9.56 0.00 41.23 3.55
2078 4330 9.634163 GTTTAACCAACTCCTTAAATTATGGTG 57.366 33.333 5.06 5.41 39.50 4.17
2079 4331 8.943594 TTAACCAACTCCTTAAATTATGGTGT 57.056 30.769 6.77 6.77 39.50 4.16
2081 4333 8.943594 AACCAACTCCTTAAATTATGGTGTAA 57.056 30.769 11.39 0.00 39.50 2.41
2082 4334 8.943594 ACCAACTCCTTAAATTATGGTGTAAA 57.056 30.769 11.39 0.00 38.22 2.01
2083 4335 9.541884 ACCAACTCCTTAAATTATGGTGTAAAT 57.458 29.630 11.39 0.00 38.22 1.40
2090 4342 9.758651 CCTTAAATTATGGTGTAAATTAAGGGC 57.241 33.333 18.25 0.00 31.23 5.19
2091 4343 9.758651 CTTAAATTATGGTGTAAATTAAGGGCC 57.241 33.333 0.00 0.00 0.00 5.80
2092 4344 7.988249 AAATTATGGTGTAAATTAAGGGCCT 57.012 32.000 0.00 0.00 0.00 5.19
2093 4345 6.976934 ATTATGGTGTAAATTAAGGGCCTG 57.023 37.500 6.92 0.00 0.00 4.85
2094 4346 3.818295 TGGTGTAAATTAAGGGCCTGT 57.182 42.857 6.92 0.00 0.00 4.00
2095 4347 4.120946 TGGTGTAAATTAAGGGCCTGTT 57.879 40.909 6.92 0.00 0.00 3.16
2096 4348 4.083565 TGGTGTAAATTAAGGGCCTGTTC 58.916 43.478 6.92 0.00 0.00 3.18
2097 4349 3.128068 GGTGTAAATTAAGGGCCTGTTCG 59.872 47.826 6.92 0.00 0.00 3.95
2098 4350 3.128068 GTGTAAATTAAGGGCCTGTTCGG 59.872 47.826 6.92 0.00 0.00 4.30
2121 4373 4.218578 CGCCAGCTCCGCAGATCT 62.219 66.667 3.36 0.00 0.00 2.75
2122 4374 2.588314 GCCAGCTCCGCAGATCTG 60.588 66.667 18.84 18.84 36.25 2.90
2141 4393 3.298126 CGGAGCGCGTATATCTCAG 57.702 57.895 8.43 1.92 0.00 3.35
2142 4394 0.794981 CGGAGCGCGTATATCTCAGC 60.795 60.000 8.43 0.00 0.00 4.26
2143 4395 0.523966 GGAGCGCGTATATCTCAGCT 59.476 55.000 8.43 0.00 37.69 4.24
2144 4396 1.068194 GGAGCGCGTATATCTCAGCTT 60.068 52.381 8.43 0.00 34.85 3.74
2145 4397 2.608261 GGAGCGCGTATATCTCAGCTTT 60.608 50.000 8.43 0.00 34.85 3.51
2146 4398 3.366070 GGAGCGCGTATATCTCAGCTTTA 60.366 47.826 8.43 0.00 34.85 1.85
2147 4399 3.566523 AGCGCGTATATCTCAGCTTTAC 58.433 45.455 8.43 0.00 0.00 2.01
2148 4400 2.662156 GCGCGTATATCTCAGCTTTACC 59.338 50.000 8.43 0.00 0.00 2.85
2149 4401 3.612004 GCGCGTATATCTCAGCTTTACCT 60.612 47.826 8.43 0.00 0.00 3.08
2150 4402 4.547532 CGCGTATATCTCAGCTTTACCTT 58.452 43.478 0.00 0.00 0.00 3.50
2151 4403 4.982916 CGCGTATATCTCAGCTTTACCTTT 59.017 41.667 0.00 0.00 0.00 3.11
2152 4404 5.462398 CGCGTATATCTCAGCTTTACCTTTT 59.538 40.000 0.00 0.00 0.00 2.27
2153 4405 6.345882 CGCGTATATCTCAGCTTTACCTTTTC 60.346 42.308 0.00 0.00 0.00 2.29
2154 4406 6.479001 GCGTATATCTCAGCTTTACCTTTTCA 59.521 38.462 0.00 0.00 0.00 2.69
2155 4407 7.306866 GCGTATATCTCAGCTTTACCTTTTCAG 60.307 40.741 0.00 0.00 0.00 3.02
2156 4408 6.934048 ATATCTCAGCTTTACCTTTTCAGC 57.066 37.500 0.00 0.00 0.00 4.26
2157 4409 3.412386 TCTCAGCTTTACCTTTTCAGCC 58.588 45.455 0.00 0.00 32.25 4.85
2158 4410 3.073062 TCTCAGCTTTACCTTTTCAGCCT 59.927 43.478 0.00 0.00 32.25 4.58
2159 4411 3.149196 TCAGCTTTACCTTTTCAGCCTG 58.851 45.455 0.00 0.00 32.25 4.85
2160 4412 1.889170 AGCTTTACCTTTTCAGCCTGC 59.111 47.619 0.00 0.00 32.25 4.85
2161 4413 1.613437 GCTTTACCTTTTCAGCCTGCA 59.387 47.619 0.00 0.00 0.00 4.41
2162 4414 2.352127 GCTTTACCTTTTCAGCCTGCAG 60.352 50.000 6.78 6.78 0.00 4.41
2163 4415 1.247567 TTACCTTTTCAGCCTGCAGC 58.752 50.000 8.66 3.91 44.25 5.25
2189 4441 2.507992 CTCCGCGAGCTGACTTGG 60.508 66.667 8.23 0.00 0.00 3.61
2190 4442 3.997064 CTCCGCGAGCTGACTTGGG 62.997 68.421 8.23 0.00 39.44 4.12
2191 4443 4.069232 CCGCGAGCTGACTTGGGA 62.069 66.667 8.23 0.00 41.70 4.37
2192 4444 2.507992 CGCGAGCTGACTTGGGAG 60.508 66.667 0.00 0.00 41.70 4.30
2193 4445 2.659610 GCGAGCTGACTTGGGAGT 59.340 61.111 0.00 0.00 39.32 3.85
2194 4446 1.739562 GCGAGCTGACTTGGGAGTG 60.740 63.158 0.00 0.00 35.88 3.51
2195 4447 1.079543 CGAGCTGACTTGGGAGTGG 60.080 63.158 0.00 0.00 35.88 4.00
2196 4448 1.536073 CGAGCTGACTTGGGAGTGGA 61.536 60.000 0.00 0.00 35.88 4.02
2197 4449 0.248843 GAGCTGACTTGGGAGTGGAG 59.751 60.000 0.00 0.00 35.88 3.86
2198 4450 1.197430 AGCTGACTTGGGAGTGGAGG 61.197 60.000 0.00 0.00 35.88 4.30
2199 4451 1.986413 CTGACTTGGGAGTGGAGGG 59.014 63.158 0.00 0.00 35.88 4.30
2200 4452 0.545309 CTGACTTGGGAGTGGAGGGA 60.545 60.000 0.00 0.00 35.88 4.20
2201 4453 0.119155 TGACTTGGGAGTGGAGGGAT 59.881 55.000 0.00 0.00 35.88 3.85
2202 4454 1.290134 GACTTGGGAGTGGAGGGATT 58.710 55.000 0.00 0.00 35.88 3.01
2203 4455 1.210722 GACTTGGGAGTGGAGGGATTC 59.789 57.143 0.00 0.00 35.88 2.52
2204 4456 0.548510 CTTGGGAGTGGAGGGATTCC 59.451 60.000 0.00 0.00 46.98 3.01
2211 4463 2.901042 GGAGGGATTCCGAACGCT 59.099 61.111 0.00 0.00 35.91 5.07
2212 4464 1.227292 GGAGGGATTCCGAACGCTC 60.227 63.158 14.16 14.16 42.58 5.03
2213 4465 1.227292 GAGGGATTCCGAACGCTCC 60.227 63.158 12.64 4.39 39.20 4.70
2214 4466 2.203029 GGGATTCCGAACGCTCCC 60.203 66.667 3.05 3.05 40.60 4.30
2215 4467 2.732619 GGGATTCCGAACGCTCCCT 61.733 63.158 10.09 0.00 43.45 4.20
2216 4468 1.397390 GGGATTCCGAACGCTCCCTA 61.397 60.000 10.09 0.00 43.45 3.53
2217 4469 0.462789 GGATTCCGAACGCTCCCTAA 59.537 55.000 0.00 0.00 0.00 2.69
2218 4470 1.568606 GATTCCGAACGCTCCCTAAC 58.431 55.000 0.00 0.00 0.00 2.34
2219 4471 1.136500 GATTCCGAACGCTCCCTAACT 59.864 52.381 0.00 0.00 0.00 2.24
2220 4472 0.245539 TTCCGAACGCTCCCTAACTG 59.754 55.000 0.00 0.00 0.00 3.16
2221 4473 1.153628 CCGAACGCTCCCTAACTGG 60.154 63.158 0.00 0.00 0.00 4.00
2222 4474 1.601419 CCGAACGCTCCCTAACTGGA 61.601 60.000 0.00 0.00 38.35 3.86
2223 4475 0.460311 CGAACGCTCCCTAACTGGAT 59.540 55.000 0.00 0.00 38.35 3.41
2224 4476 1.134788 CGAACGCTCCCTAACTGGATT 60.135 52.381 0.00 0.00 38.35 3.01
2225 4477 2.280628 GAACGCTCCCTAACTGGATTG 58.719 52.381 0.00 0.00 38.35 2.67
2226 4478 0.107654 ACGCTCCCTAACTGGATTGC 60.108 55.000 0.00 0.00 38.35 3.56
2227 4479 0.815615 CGCTCCCTAACTGGATTGCC 60.816 60.000 0.00 0.00 38.35 4.52
2228 4480 0.815615 GCTCCCTAACTGGATTGCCG 60.816 60.000 0.00 0.00 38.35 5.69
2229 4481 0.815615 CTCCCTAACTGGATTGCCGC 60.816 60.000 0.00 0.00 38.35 6.53
2230 4482 1.224592 CCCTAACTGGATTGCCGCT 59.775 57.895 0.00 0.00 38.35 5.52
2231 4483 0.815615 CCCTAACTGGATTGCCGCTC 60.816 60.000 0.00 0.00 38.35 5.03
2232 4484 0.179000 CCTAACTGGATTGCCGCTCT 59.821 55.000 0.00 0.00 38.35 4.09
2233 4485 1.293924 CTAACTGGATTGCCGCTCTG 58.706 55.000 0.00 0.00 36.79 3.35
2234 4486 0.744414 TAACTGGATTGCCGCTCTGC 60.744 55.000 0.00 0.00 36.79 4.26
2235 4487 2.124819 CTGGATTGCCGCTCTGCT 60.125 61.111 0.00 0.00 36.79 4.24
2236 4488 2.124983 TGGATTGCCGCTCTGCTC 60.125 61.111 0.00 0.00 36.79 4.26
2237 4489 2.899339 GGATTGCCGCTCTGCTCC 60.899 66.667 0.00 0.00 0.00 4.70
2238 4490 3.267860 GATTGCCGCTCTGCTCCG 61.268 66.667 0.00 0.00 0.00 4.63
2239 4491 4.845580 ATTGCCGCTCTGCTCCGG 62.846 66.667 0.00 0.00 46.94 5.14
2376 4628 2.412089 GCACAGATCGTACCACTCAAAC 59.588 50.000 0.00 0.00 0.00 2.93
2419 4672 2.391389 GGAAGAACCGCTGGCGAAG 61.391 63.158 16.79 3.19 42.83 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 8.323567 TGGTTTCCGTACCTAAATAAAGATTCT 58.676 33.333 0.00 0.00 39.04 2.40
85 86 8.496707 TGGTTTCCGTACCTAAATAAAGATTC 57.503 34.615 0.00 0.00 39.04 2.52
243 244 5.751586 TCCGTATTAGAAATGCCCTTCTTT 58.248 37.500 3.01 0.00 36.95 2.52
245 246 5.513267 GGATCCGTATTAGAAATGCCCTTCT 60.513 44.000 0.00 3.21 39.09 2.85
246 247 4.695928 GGATCCGTATTAGAAATGCCCTTC 59.304 45.833 0.00 0.00 0.00 3.46
247 248 4.351111 AGGATCCGTATTAGAAATGCCCTT 59.649 41.667 5.98 0.00 0.00 3.95
248 249 3.910627 AGGATCCGTATTAGAAATGCCCT 59.089 43.478 5.98 0.00 0.00 5.19
250 251 4.894784 TGAGGATCCGTATTAGAAATGCC 58.105 43.478 5.98 0.00 0.00 4.40
251 252 7.301054 CAATTGAGGATCCGTATTAGAAATGC 58.699 38.462 5.98 0.00 0.00 3.56
255 256 5.305585 GCCAATTGAGGATCCGTATTAGAA 58.694 41.667 7.12 0.00 0.00 2.10
258 259 3.650942 AGGCCAATTGAGGATCCGTATTA 59.349 43.478 5.01 0.00 0.00 0.98
261 262 1.140852 CAGGCCAATTGAGGATCCGTA 59.859 52.381 5.01 0.00 0.00 4.02
267 268 0.251121 TTTCGCAGGCCAATTGAGGA 60.251 50.000 5.01 0.00 0.00 3.71
274 275 1.578926 CGAACATTTCGCAGGCCAA 59.421 52.632 5.01 0.00 46.97 4.52
283 284 0.804989 CTGGACTGCCCGAACATTTC 59.195 55.000 0.00 0.00 37.93 2.17
287 288 2.741092 GTCTGGACTGCCCGAACA 59.259 61.111 0.00 0.00 37.93 3.18
299 305 3.354089 AAATGACAAAAGTGCGTCTGG 57.646 42.857 0.00 0.00 33.18 3.86
309 315 9.544314 CGGACAAATACGTATTAAATGACAAAA 57.456 29.630 20.62 0.00 0.00 2.44
319 325 4.624882 ACGTTTGCGGACAAATACGTATTA 59.375 37.500 20.62 0.98 46.14 0.98
323 329 1.219646 ACGTTTGCGGACAAATACGT 58.780 45.000 0.00 0.00 46.93 3.57
335 341 0.782384 CGGACTACAGACACGTTTGC 59.218 55.000 0.00 0.00 0.00 3.68
337 343 2.877043 AACGGACTACAGACACGTTT 57.123 45.000 0.00 0.00 44.21 3.60
341 347 3.734735 GTGAGAAAACGGACTACAGACAC 59.265 47.826 0.00 0.00 0.00 3.67
342 348 3.382227 TGTGAGAAAACGGACTACAGACA 59.618 43.478 0.00 0.00 0.00 3.41
343 349 3.973657 TGTGAGAAAACGGACTACAGAC 58.026 45.455 0.00 0.00 0.00 3.51
344 350 4.659111 TTGTGAGAAAACGGACTACAGA 57.341 40.909 0.00 0.00 0.00 3.41
345 351 5.465390 TGATTTGTGAGAAAACGGACTACAG 59.535 40.000 0.00 0.00 0.00 2.74
346 352 5.361427 TGATTTGTGAGAAAACGGACTACA 58.639 37.500 0.00 0.00 0.00 2.74
347 353 5.694910 TCTGATTTGTGAGAAAACGGACTAC 59.305 40.000 0.00 0.00 0.00 2.73
348 354 5.694910 GTCTGATTTGTGAGAAAACGGACTA 59.305 40.000 14.31 0.00 31.24 2.59
349 355 4.511826 GTCTGATTTGTGAGAAAACGGACT 59.488 41.667 14.31 0.00 31.24 3.85
353 360 3.218398 GCGTCTGATTTGTGAGAAAACG 58.782 45.455 0.00 0.00 0.00 3.60
359 366 4.408993 TGATTTGCGTCTGATTTGTGAG 57.591 40.909 0.00 0.00 0.00 3.51
362 369 3.057315 CCCTTGATTTGCGTCTGATTTGT 60.057 43.478 0.00 0.00 0.00 2.83
392 399 2.281484 TGGCAGAGGTCCAAACGC 60.281 61.111 0.00 0.00 0.00 4.84
393 400 2.317609 CGTGGCAGAGGTCCAAACG 61.318 63.158 0.00 0.00 35.01 3.60
396 403 1.669440 GTACGTGGCAGAGGTCCAA 59.331 57.895 0.00 0.00 35.01 3.53
420 427 2.874751 GAATGGGACCGTTTGCCG 59.125 61.111 0.00 0.00 39.06 5.69
435 442 0.690192 TGCATGAGAGGGGTTTCGAA 59.310 50.000 0.00 0.00 0.00 3.71
438 445 1.003580 TGTCTGCATGAGAGGGGTTTC 59.996 52.381 0.00 0.00 0.00 2.78
448 457 0.321919 GGAGGCAAGTGTCTGCATGA 60.322 55.000 0.00 0.00 44.52 3.07
450 459 1.001641 GGGAGGCAAGTGTCTGCAT 60.002 57.895 6.75 0.00 44.52 3.96
467 476 4.680237 TGGAGCGGTCGCACAAGG 62.680 66.667 17.71 0.00 44.88 3.61
506 515 2.086869 CGTCCACTCTAAACCGGTAGA 58.913 52.381 8.00 7.31 0.00 2.59
509 518 1.291272 GCGTCCACTCTAAACCGGT 59.709 57.895 0.00 0.00 0.00 5.28
510 519 1.804326 CGCGTCCACTCTAAACCGG 60.804 63.158 0.00 0.00 0.00 5.28
511 520 1.069378 GTCGCGTCCACTCTAAACCG 61.069 60.000 5.77 0.00 0.00 4.44
536 545 3.308053 CCTTCAGTCTACATCATGTTGCG 59.692 47.826 0.00 0.00 0.00 4.85
545 554 3.259374 CAGTGTGTCCCTTCAGTCTACAT 59.741 47.826 0.00 0.00 0.00 2.29
546 555 2.628178 CAGTGTGTCCCTTCAGTCTACA 59.372 50.000 0.00 0.00 0.00 2.74
548 557 2.248248 CCAGTGTGTCCCTTCAGTCTA 58.752 52.381 0.00 0.00 0.00 2.59
550 559 0.603975 GCCAGTGTGTCCCTTCAGTC 60.604 60.000 0.00 0.00 0.00 3.51
552 561 1.302832 GGCCAGTGTGTCCCTTCAG 60.303 63.158 0.00 0.00 0.00 3.02
614 623 1.344438 TCTGAGACGGCATTGAACACT 59.656 47.619 0.00 0.00 0.00 3.55
615 624 1.728971 CTCTGAGACGGCATTGAACAC 59.271 52.381 0.00 0.00 0.00 3.32
616 625 1.941209 GCTCTGAGACGGCATTGAACA 60.941 52.381 9.28 0.00 0.00 3.18
630 639 2.042464 AGTCTGGTCACTTTGCTCTGA 58.958 47.619 0.00 0.00 0.00 3.27
639 648 1.464376 CGTCACCCAGTCTGGTCACT 61.464 60.000 17.85 0.00 36.12 3.41
650 659 2.915659 AAGCCGTCTCGTCACCCA 60.916 61.111 0.00 0.00 0.00 4.51
654 663 0.322277 AGTAGGAAGCCGTCTCGTCA 60.322 55.000 0.00 0.00 0.00 4.35
690 704 2.360350 AGTAGGCGGACGGACGAA 60.360 61.111 5.17 0.00 35.47 3.85
691 705 2.821366 GAGTAGGCGGACGGACGA 60.821 66.667 5.17 0.00 35.47 4.20
692 706 4.233635 CGAGTAGGCGGACGGACG 62.234 72.222 0.00 0.00 0.00 4.79
702 716 3.741344 GCACTTGTTATATGCCGAGTAGG 59.259 47.826 0.00 0.00 44.97 3.18
703 717 3.425525 CGCACTTGTTATATGCCGAGTAG 59.574 47.826 0.00 0.00 35.91 2.57
704 718 3.377439 CGCACTTGTTATATGCCGAGTA 58.623 45.455 0.00 0.00 35.91 2.59
705 719 2.201732 CGCACTTGTTATATGCCGAGT 58.798 47.619 0.00 0.00 35.91 4.18
706 720 1.070577 GCGCACTTGTTATATGCCGAG 60.071 52.381 0.30 0.00 35.91 4.63
707 721 0.934496 GCGCACTTGTTATATGCCGA 59.066 50.000 0.30 0.00 35.91 5.54
715 729 0.739462 CTCGGATGGCGCACTTGTTA 60.739 55.000 10.83 0.00 0.00 2.41
720 734 1.741770 GTTTCTCGGATGGCGCACT 60.742 57.895 10.83 0.00 0.00 4.40
725 739 1.749258 GGTGGGTTTCTCGGATGGC 60.749 63.158 0.00 0.00 0.00 4.40
739 753 3.369400 TTTGAATGCGGGCGGTGG 61.369 61.111 0.00 0.00 0.00 4.61
766 788 0.547553 TAGCAGGCATCCATCAAGCA 59.452 50.000 0.00 0.00 0.00 3.91
777 799 1.737696 CGACCGTGTTTATAGCAGGCA 60.738 52.381 0.00 0.00 0.00 4.75
781 803 1.415288 GCGCGACCGTGTTTATAGCA 61.415 55.000 12.10 0.00 36.67 3.49
782 804 1.271840 GCGCGACCGTGTTTATAGC 59.728 57.895 12.10 0.00 36.67 2.97
788 810 3.932313 GTTGTGCGCGACCGTGTT 61.932 61.111 12.10 0.00 36.67 3.32
793 815 2.414840 AATTTGGGTTGTGCGCGACC 62.415 55.000 26.10 26.10 46.33 4.79
794 816 1.007849 AATTTGGGTTGTGCGCGAC 60.008 52.632 12.10 9.28 0.00 5.19
795 817 1.007964 CAATTTGGGTTGTGCGCGA 60.008 52.632 12.10 0.00 0.00 5.87
796 818 2.656807 GCAATTTGGGTTGTGCGCG 61.657 57.895 0.00 0.00 0.00 6.86
797 819 1.593750 TGCAATTTGGGTTGTGCGC 60.594 52.632 0.00 0.00 39.92 6.09
798 820 1.220817 GGTGCAATTTGGGTTGTGCG 61.221 55.000 0.00 0.00 39.92 5.34
811 835 0.250467 GAGAAGCAGAGGTGGTGCAA 60.250 55.000 0.00 0.00 43.82 4.08
838 862 0.460284 GTCAGCGGTCATGGACGAAT 60.460 55.000 12.95 0.00 32.65 3.34
842 867 3.188786 GCGTCAGCGGTCATGGAC 61.189 66.667 0.00 0.00 38.78 4.02
952 985 0.392706 CGCCCTCTATGTGCCATACA 59.607 55.000 0.00 0.00 44.87 2.29
953 986 0.320771 CCGCCCTCTATGTGCCATAC 60.321 60.000 0.00 0.00 0.00 2.39
954 987 0.471022 TCCGCCCTCTATGTGCCATA 60.471 55.000 0.00 0.00 0.00 2.74
955 988 1.766059 TCCGCCCTCTATGTGCCAT 60.766 57.895 0.00 0.00 0.00 4.40
980 1014 2.897641 CTTTCCTCCAGCGAGCTCGG 62.898 65.000 35.10 20.45 40.23 4.63
988 1022 1.207791 TCCTCCATCTTTCCTCCAGC 58.792 55.000 0.00 0.00 0.00 4.85
997 1031 0.747255 CGGTCGTCATCCTCCATCTT 59.253 55.000 0.00 0.00 0.00 2.40
1000 1034 2.058001 TGCGGTCGTCATCCTCCAT 61.058 57.895 0.00 0.00 0.00 3.41
1002 1036 2.202756 GTGCGGTCGTCATCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
1020 1061 3.329889 TCAGACGCCCCCTGCATT 61.330 61.111 0.00 0.00 41.33 3.56
1028 1069 0.248949 GACCTTATCGTCAGACGCCC 60.249 60.000 18.62 0.00 42.21 6.13
1046 1087 1.005394 GAAACGGTTGAGGGCTCGA 60.005 57.895 0.00 0.00 0.00 4.04
1048 1089 3.982829 GGAAACGGTTGAGGGCTC 58.017 61.111 0.00 0.00 0.00 4.70
1070 1111 1.671054 ATGGTGAAGCCGACAACCG 60.671 57.895 0.00 0.00 41.21 4.44
1118 1159 2.176889 GTGTTGGCTCCTACTCCACTA 58.823 52.381 2.50 0.00 30.97 2.74
1119 1160 0.977395 GTGTTGGCTCCTACTCCACT 59.023 55.000 2.50 0.00 30.97 4.00
1121 1162 1.071699 GTTGTGTTGGCTCCTACTCCA 59.928 52.381 2.50 0.00 0.00 3.86
1126 1167 0.250727 GCAGGTTGTGTTGGCTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
1134 1175 1.095228 CCGACAGTGCAGGTTGTGTT 61.095 55.000 3.40 0.00 0.00 3.32
1160 1201 1.614903 CCTCTTGCAGCATCCAAAACA 59.385 47.619 0.00 0.00 0.00 2.83
1162 1203 2.165167 CTCCTCTTGCAGCATCCAAAA 58.835 47.619 0.00 0.00 0.00 2.44
1164 1205 0.679002 GCTCCTCTTGCAGCATCCAA 60.679 55.000 0.00 0.00 35.56 3.53
1224 1265 0.443869 CGTCTGCGATTTGTCCCTTG 59.556 55.000 0.00 0.00 41.33 3.61
1225 1266 0.320374 TCGTCTGCGATTTGTCCCTT 59.680 50.000 0.00 0.00 42.81 3.95
1278 1327 1.384502 TCATCCCGGGAGCCTGAAT 60.385 57.895 30.42 7.08 0.00 2.57
1301 1350 1.523711 ATGGATTGGTACAGCGGCG 60.524 57.895 0.51 0.51 42.39 6.46
1303 1352 1.775039 CGCATGGATTGGTACAGCGG 61.775 60.000 0.00 0.00 42.39 5.52
1322 1372 4.465512 CCGATGTTGTGGCGCTGC 62.466 66.667 7.64 0.29 0.00 5.25
1330 1380 4.373116 ACTCGCGGCCGATGTTGT 62.373 61.111 33.48 19.05 43.47 3.32
1332 1382 3.371097 ATCACTCGCGGCCGATGTT 62.371 57.895 33.48 12.76 43.47 2.71
1342 1392 3.200593 CCAGCTGCCATCACTCGC 61.201 66.667 8.66 0.00 0.00 5.03
1375 1425 1.668294 CTGAACAGGGCGTCAGTCT 59.332 57.895 0.00 0.00 0.00 3.24
1393 1443 1.666234 GCCTCCGCATCGATCTTCC 60.666 63.158 0.00 0.00 34.03 3.46
1416 1466 2.599645 ATCGCCTGCATCGCCTCTTT 62.600 55.000 3.90 0.00 0.00 2.52
1417 1467 2.985512 GATCGCCTGCATCGCCTCTT 62.986 60.000 3.90 0.00 0.00 2.85
1489 1539 2.280524 CGGGCAAGAACCGTGTGA 60.281 61.111 0.00 0.00 46.03 3.58
1508 1558 1.593209 GGTCTTGTGGTCGTTGCGA 60.593 57.895 0.00 0.00 0.00 5.10
1527 1577 1.035923 ACGATCGACATGGATGAGCT 58.964 50.000 24.34 0.00 0.00 4.09
1530 1580 1.067060 GTCCACGATCGACATGGATGA 59.933 52.381 23.79 4.52 44.21 2.92
1537 1587 0.738975 GATGAGGTCCACGATCGACA 59.261 55.000 24.34 9.78 31.55 4.35
1540 1590 0.040870 CGAGATGAGGTCCACGATCG 60.041 60.000 14.88 14.88 31.76 3.69
1569 1619 1.741706 TCCGGAGTCTGTCGTATGAAC 59.258 52.381 0.00 0.00 0.00 3.18
1578 1628 0.699399 TCTTCCTCTCCGGAGTCTGT 59.301 55.000 30.17 0.00 44.28 3.41
1588 1638 2.242708 TCCCACCTCTACTCTTCCTCTC 59.757 54.545 0.00 0.00 0.00 3.20
1592 1642 2.233305 TGTCCCACCTCTACTCTTCC 57.767 55.000 0.00 0.00 0.00 3.46
1635 1686 1.913262 ACGGAGCTGTCCCACATGA 60.913 57.895 0.00 0.00 40.20 3.07
1669 1720 2.735237 GTAATCGGCGAGGGGGAG 59.265 66.667 17.22 0.00 0.00 4.30
1671 1722 3.937447 GGGTAATCGGCGAGGGGG 61.937 72.222 17.22 0.00 0.00 5.40
1679 1730 3.053831 AGTGAAGTTGTGGGTAATCGG 57.946 47.619 0.00 0.00 0.00 4.18
1689 1740 2.158957 TGGCTTCGAGAAGTGAAGTTGT 60.159 45.455 13.58 0.00 43.72 3.32
1704 1755 2.093658 TCTTCCCTATGTTCGTGGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
1705 1756 1.906574 TCTTCCCTATGTTCGTGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
1709 1760 5.290386 GTCCTATTCTTCCCTATGTTCGTG 58.710 45.833 0.00 0.00 0.00 4.35
1710 1761 4.037684 CGTCCTATTCTTCCCTATGTTCGT 59.962 45.833 0.00 0.00 0.00 3.85
1711 1762 4.037684 ACGTCCTATTCTTCCCTATGTTCG 59.962 45.833 0.00 0.00 0.00 3.95
1712 1763 5.290386 CACGTCCTATTCTTCCCTATGTTC 58.710 45.833 0.00 0.00 0.00 3.18
1713 1764 4.101119 CCACGTCCTATTCTTCCCTATGTT 59.899 45.833 0.00 0.00 0.00 2.71
1714 1765 3.641906 CCACGTCCTATTCTTCCCTATGT 59.358 47.826 0.00 0.00 0.00 2.29
1715 1766 3.895656 TCCACGTCCTATTCTTCCCTATG 59.104 47.826 0.00 0.00 0.00 2.23
1716 1767 4.194678 TCCACGTCCTATTCTTCCCTAT 57.805 45.455 0.00 0.00 0.00 2.57
1717 1768 3.675348 TCCACGTCCTATTCTTCCCTA 57.325 47.619 0.00 0.00 0.00 3.53
1718 1769 2.500504 GTTCCACGTCCTATTCTTCCCT 59.499 50.000 0.00 0.00 0.00 4.20
1755 1806 6.448207 AACCTAGTCTAAATCTCCACGTAC 57.552 41.667 0.00 0.00 0.00 3.67
1756 1807 8.579850 TTTAACCTAGTCTAAATCTCCACGTA 57.420 34.615 0.00 0.00 0.00 3.57
1758 1809 8.767478 TTTTTAACCTAGTCTAAATCTCCACG 57.233 34.615 0.00 0.00 0.00 4.94
1784 1835 7.208777 TCATTAACAAAAGTGCACATGACATT 58.791 30.769 21.04 8.41 0.00 2.71
1786 1837 6.141560 TCATTAACAAAAGTGCACATGACA 57.858 33.333 21.04 5.71 0.00 3.58
1788 1839 7.710044 ACATTTCATTAACAAAAGTGCACATGA 59.290 29.630 21.04 13.39 0.00 3.07
1789 1840 7.794810 CACATTTCATTAACAAAAGTGCACATG 59.205 33.333 21.04 16.69 0.00 3.21
1791 1842 6.815641 ACACATTTCATTAACAAAAGTGCACA 59.184 30.769 21.04 0.00 0.00 4.57
1853 3521 4.607955 GAACTAACCTTGGTTCAAACTGC 58.392 43.478 8.46 0.00 44.84 4.40
1878 3546 2.870411 GTGTCGTGCCTTCAAACTAAGT 59.130 45.455 0.00 0.00 0.00 2.24
1907 3576 5.509840 CCAAGTTAATACTCCCTCCGATCAG 60.510 48.000 0.00 0.00 31.99 2.90
1933 3602 7.440856 GGAATTTAAGCAAACTGGACAAATTGA 59.559 33.333 0.00 0.00 0.00 2.57
1964 4216 5.708697 TCAAATTAGAGTCACTGTCCGTCTA 59.291 40.000 0.00 0.00 0.00 2.59
1979 4231 4.695455 CCAAAAGCCGTCTCTCAAATTAGA 59.305 41.667 0.00 0.00 0.00 2.10
1981 4233 3.190535 GCCAAAAGCCGTCTCTCAAATTA 59.809 43.478 0.00 0.00 34.35 1.40
2010 4262 2.504244 GAGGACTGTCGAACGCGG 60.504 66.667 12.47 0.00 38.28 6.46
2011 4263 2.870161 CGAGGACTGTCGAACGCG 60.870 66.667 3.53 3.53 42.85 6.01
2012 4264 3.173240 GCGAGGACTGTCGAACGC 61.173 66.667 21.18 21.18 42.85 4.84
2013 4265 2.870161 CGCGAGGACTGTCGAACG 60.870 66.667 0.00 12.76 42.85 3.95
2042 4294 0.891904 TTGGTTAAACCCCGCTCTGC 60.892 55.000 0.00 0.00 37.50 4.26
2043 4295 0.879090 GTTGGTTAAACCCCGCTCTG 59.121 55.000 0.00 0.00 37.50 3.35
2044 4296 0.769247 AGTTGGTTAAACCCCGCTCT 59.231 50.000 0.00 0.00 39.85 4.09
2045 4297 1.162698 GAGTTGGTTAAACCCCGCTC 58.837 55.000 0.00 0.00 39.85 5.03
2046 4298 0.251033 GGAGTTGGTTAAACCCCGCT 60.251 55.000 0.00 0.00 39.85 5.52
2047 4299 0.251033 AGGAGTTGGTTAAACCCCGC 60.251 55.000 0.00 0.00 41.46 6.13
2048 4300 2.281539 AAGGAGTTGGTTAAACCCCG 57.718 50.000 0.00 0.00 41.46 5.73
2049 4301 6.675413 AATTTAAGGAGTTGGTTAAACCCC 57.325 37.500 0.00 0.00 39.85 4.95
2050 4302 8.255206 CCATAATTTAAGGAGTTGGTTAAACCC 58.745 37.037 0.00 0.00 39.85 4.11
2051 4303 8.809066 ACCATAATTTAAGGAGTTGGTTAAACC 58.191 33.333 4.75 0.00 39.85 3.27
2052 4304 9.634163 CACCATAATTTAAGGAGTTGGTTAAAC 57.366 33.333 4.75 0.00 39.24 2.01
2053 4305 9.369672 ACACCATAATTTAAGGAGTTGGTTAAA 57.630 29.630 4.75 0.00 33.88 1.52
2054 4306 8.943594 ACACCATAATTTAAGGAGTTGGTTAA 57.056 30.769 4.75 0.00 33.88 2.01
2056 4308 8.943594 TTACACCATAATTTAAGGAGTTGGTT 57.056 30.769 4.75 0.00 33.88 3.67
2057 4309 8.943594 TTTACACCATAATTTAAGGAGTTGGT 57.056 30.769 4.75 0.00 36.46 3.67
2064 4316 9.758651 GCCCTTAATTTACACCATAATTTAAGG 57.241 33.333 20.67 20.67 42.67 2.69
2065 4317 9.758651 GGCCCTTAATTTACACCATAATTTAAG 57.241 33.333 0.00 10.98 34.02 1.85
2066 4318 9.495382 AGGCCCTTAATTTACACCATAATTTAA 57.505 29.630 0.00 0.00 0.00 1.52
2067 4319 8.919145 CAGGCCCTTAATTTACACCATAATTTA 58.081 33.333 0.00 0.00 0.00 1.40
2068 4320 7.401782 ACAGGCCCTTAATTTACACCATAATTT 59.598 33.333 0.00 0.00 0.00 1.82
2069 4321 6.900743 ACAGGCCCTTAATTTACACCATAATT 59.099 34.615 0.00 0.00 0.00 1.40
2070 4322 6.440354 ACAGGCCCTTAATTTACACCATAAT 58.560 36.000 0.00 0.00 0.00 1.28
2071 4323 5.833340 ACAGGCCCTTAATTTACACCATAA 58.167 37.500 0.00 0.00 0.00 1.90
2072 4324 5.459982 ACAGGCCCTTAATTTACACCATA 57.540 39.130 0.00 0.00 0.00 2.74
2073 4325 4.331159 ACAGGCCCTTAATTTACACCAT 57.669 40.909 0.00 0.00 0.00 3.55
2074 4326 3.818295 ACAGGCCCTTAATTTACACCA 57.182 42.857 0.00 0.00 0.00 4.17
2075 4327 3.128068 CGAACAGGCCCTTAATTTACACC 59.872 47.826 0.00 0.00 0.00 4.16
2076 4328 3.128068 CCGAACAGGCCCTTAATTTACAC 59.872 47.826 0.00 0.00 0.00 2.90
2077 4329 3.349022 CCGAACAGGCCCTTAATTTACA 58.651 45.455 0.00 0.00 0.00 2.41
2123 4375 0.794981 GCTGAGATATACGCGCTCCG 60.795 60.000 5.73 1.56 44.21 4.63
2124 4376 0.523966 AGCTGAGATATACGCGCTCC 59.476 55.000 5.73 0.00 0.00 4.70
2125 4377 2.339728 AAGCTGAGATATACGCGCTC 57.660 50.000 5.73 4.66 31.44 5.03
2126 4378 2.802787 AAAGCTGAGATATACGCGCT 57.197 45.000 5.73 0.00 32.52 5.92
2127 4379 2.662156 GGTAAAGCTGAGATATACGCGC 59.338 50.000 5.73 0.00 0.00 6.86
2128 4380 4.162096 AGGTAAAGCTGAGATATACGCG 57.838 45.455 3.53 3.53 0.00 6.01
2129 4381 6.479001 TGAAAAGGTAAAGCTGAGATATACGC 59.521 38.462 0.00 0.00 0.00 4.42
2130 4382 7.306866 GCTGAAAAGGTAAAGCTGAGATATACG 60.307 40.741 0.00 0.00 32.82 3.06
2131 4383 7.041712 GGCTGAAAAGGTAAAGCTGAGATATAC 60.042 40.741 0.00 0.00 35.93 1.47
2132 4384 6.992715 GGCTGAAAAGGTAAAGCTGAGATATA 59.007 38.462 0.00 0.00 35.93 0.86
2133 4385 5.825151 GGCTGAAAAGGTAAAGCTGAGATAT 59.175 40.000 0.00 0.00 35.93 1.63
2134 4386 5.045578 AGGCTGAAAAGGTAAAGCTGAGATA 60.046 40.000 0.00 0.00 35.93 1.98
2135 4387 4.013050 GGCTGAAAAGGTAAAGCTGAGAT 58.987 43.478 0.00 0.00 35.93 2.75
2136 4388 3.073062 AGGCTGAAAAGGTAAAGCTGAGA 59.927 43.478 0.00 0.00 35.93 3.27
2137 4389 3.190118 CAGGCTGAAAAGGTAAAGCTGAG 59.810 47.826 9.42 0.00 35.93 3.35
2138 4390 3.149196 CAGGCTGAAAAGGTAAAGCTGA 58.851 45.455 9.42 0.00 35.93 4.26
2139 4391 2.352127 GCAGGCTGAAAAGGTAAAGCTG 60.352 50.000 20.86 0.00 35.93 4.24
2140 4392 1.889170 GCAGGCTGAAAAGGTAAAGCT 59.111 47.619 20.86 0.00 35.93 3.74
2141 4393 1.613437 TGCAGGCTGAAAAGGTAAAGC 59.387 47.619 20.86 0.00 34.86 3.51
2142 4394 2.352127 GCTGCAGGCTGAAAAGGTAAAG 60.352 50.000 20.86 0.00 38.06 1.85
2143 4395 1.613437 GCTGCAGGCTGAAAAGGTAAA 59.387 47.619 20.86 0.00 38.06 2.01
2144 4396 1.247567 GCTGCAGGCTGAAAAGGTAA 58.752 50.000 20.86 0.00 38.06 2.85
2145 4397 2.946947 GCTGCAGGCTGAAAAGGTA 58.053 52.632 20.86 0.00 38.06 3.08
2146 4398 3.769201 GCTGCAGGCTGAAAAGGT 58.231 55.556 20.86 0.00 38.06 3.50
2172 4424 2.507992 CCAAGTCAGCTCGCGGAG 60.508 66.667 6.13 3.47 0.00 4.63
2173 4425 4.069232 CCCAAGTCAGCTCGCGGA 62.069 66.667 6.13 0.00 0.00 5.54
2174 4426 3.997064 CTCCCAAGTCAGCTCGCGG 62.997 68.421 6.13 0.00 0.00 6.46
2175 4427 2.507992 CTCCCAAGTCAGCTCGCG 60.508 66.667 0.00 0.00 0.00 5.87
2176 4428 1.739562 CACTCCCAAGTCAGCTCGC 60.740 63.158 0.00 0.00 31.71 5.03
2177 4429 1.079543 CCACTCCCAAGTCAGCTCG 60.080 63.158 0.00 0.00 31.71 5.03
2178 4430 0.248843 CTCCACTCCCAAGTCAGCTC 59.751 60.000 0.00 0.00 31.71 4.09
2179 4431 1.197430 CCTCCACTCCCAAGTCAGCT 61.197 60.000 0.00 0.00 31.71 4.24
2180 4432 1.298014 CCTCCACTCCCAAGTCAGC 59.702 63.158 0.00 0.00 31.71 4.26
2181 4433 0.545309 TCCCTCCACTCCCAAGTCAG 60.545 60.000 0.00 0.00 31.71 3.51
2182 4434 0.119155 ATCCCTCCACTCCCAAGTCA 59.881 55.000 0.00 0.00 31.71 3.41
2183 4435 1.210722 GAATCCCTCCACTCCCAAGTC 59.789 57.143 0.00 0.00 31.71 3.01
2184 4436 1.290134 GAATCCCTCCACTCCCAAGT 58.710 55.000 0.00 0.00 35.60 3.16
2185 4437 0.548510 GGAATCCCTCCACTCCCAAG 59.451 60.000 0.00 0.00 44.67 3.61
2186 4438 1.271840 CGGAATCCCTCCACTCCCAA 61.272 60.000 0.00 0.00 45.74 4.12
2187 4439 1.689233 CGGAATCCCTCCACTCCCA 60.689 63.158 0.00 0.00 45.74 4.37
2188 4440 0.981277 TTCGGAATCCCTCCACTCCC 60.981 60.000 0.00 0.00 45.74 4.30
2189 4441 0.178301 GTTCGGAATCCCTCCACTCC 59.822 60.000 0.00 0.00 45.74 3.85
2190 4442 0.179108 CGTTCGGAATCCCTCCACTC 60.179 60.000 0.00 0.00 45.74 3.51
2191 4443 1.898154 CGTTCGGAATCCCTCCACT 59.102 57.895 0.00 0.00 45.74 4.00
2192 4444 1.814169 GCGTTCGGAATCCCTCCAC 60.814 63.158 0.00 0.00 45.74 4.02
2193 4445 1.956629 GAGCGTTCGGAATCCCTCCA 61.957 60.000 0.00 0.00 45.74 3.86
2194 4446 1.227292 GAGCGTTCGGAATCCCTCC 60.227 63.158 0.00 0.00 41.40 4.30
2195 4447 1.227292 GGAGCGTTCGGAATCCCTC 60.227 63.158 0.00 0.73 0.00 4.30
2196 4448 2.732619 GGGAGCGTTCGGAATCCCT 61.733 63.158 17.08 4.54 46.72 4.20
2197 4449 2.203029 GGGAGCGTTCGGAATCCC 60.203 66.667 11.17 11.17 44.48 3.85
2198 4450 0.462789 TTAGGGAGCGTTCGGAATCC 59.537 55.000 0.00 0.00 0.00 3.01
2199 4451 1.136500 AGTTAGGGAGCGTTCGGAATC 59.864 52.381 0.00 0.00 0.00 2.52
2200 4452 1.134788 CAGTTAGGGAGCGTTCGGAAT 60.135 52.381 0.00 0.00 0.00 3.01
2201 4453 0.245539 CAGTTAGGGAGCGTTCGGAA 59.754 55.000 0.00 0.00 0.00 4.30
2202 4454 1.601419 CCAGTTAGGGAGCGTTCGGA 61.601 60.000 0.00 0.00 0.00 4.55
2203 4455 1.153628 CCAGTTAGGGAGCGTTCGG 60.154 63.158 0.00 0.00 0.00 4.30
2204 4456 0.460311 ATCCAGTTAGGGAGCGTTCG 59.540 55.000 0.00 0.00 41.08 3.95
2205 4457 2.280628 CAATCCAGTTAGGGAGCGTTC 58.719 52.381 0.00 0.00 41.08 3.95
2206 4458 1.679032 GCAATCCAGTTAGGGAGCGTT 60.679 52.381 0.00 0.00 41.08 4.84
2207 4459 0.107654 GCAATCCAGTTAGGGAGCGT 60.108 55.000 0.00 0.00 41.08 5.07
2208 4460 0.815615 GGCAATCCAGTTAGGGAGCG 60.816 60.000 0.00 0.00 41.08 5.03
2209 4461 0.815615 CGGCAATCCAGTTAGGGAGC 60.816 60.000 0.00 0.00 41.08 4.70
2210 4462 0.815615 GCGGCAATCCAGTTAGGGAG 60.816 60.000 0.00 0.00 41.08 4.30
2211 4463 1.223487 GCGGCAATCCAGTTAGGGA 59.777 57.895 0.00 0.00 42.21 4.20
2212 4464 0.815615 GAGCGGCAATCCAGTTAGGG 60.816 60.000 1.45 0.00 38.24 3.53
2213 4465 0.179000 AGAGCGGCAATCCAGTTAGG 59.821 55.000 1.45 0.00 39.47 2.69
2214 4466 1.293924 CAGAGCGGCAATCCAGTTAG 58.706 55.000 1.45 0.00 0.00 2.34
2215 4467 0.744414 GCAGAGCGGCAATCCAGTTA 60.744 55.000 1.45 0.00 0.00 2.24
2216 4468 2.042831 GCAGAGCGGCAATCCAGTT 61.043 57.895 1.45 0.00 0.00 3.16
2217 4469 2.437359 GCAGAGCGGCAATCCAGT 60.437 61.111 1.45 0.00 0.00 4.00
2218 4470 2.124819 AGCAGAGCGGCAATCCAG 60.125 61.111 1.45 0.00 35.83 3.86
2219 4471 2.124983 GAGCAGAGCGGCAATCCA 60.125 61.111 1.45 0.00 35.83 3.41
2220 4472 2.899339 GGAGCAGAGCGGCAATCC 60.899 66.667 1.45 0.00 35.83 3.01
2221 4473 3.267860 CGGAGCAGAGCGGCAATC 61.268 66.667 1.45 0.00 35.83 2.67
2222 4474 4.845580 CCGGAGCAGAGCGGCAAT 62.846 66.667 0.00 0.00 35.83 3.56
2249 4501 4.610714 GGATTCCCTCCGCTCCGC 62.611 72.222 0.00 0.00 33.29 5.54
2256 4508 1.996086 TCCCGTTTGGATTCCCTCC 59.004 57.895 0.00 0.00 45.19 4.30
2264 4516 2.640826 ACAGATTAAGGTCCCGTTTGGA 59.359 45.455 0.00 0.00 42.41 3.53
2265 4517 2.747446 CACAGATTAAGGTCCCGTTTGG 59.253 50.000 0.00 0.00 0.00 3.28
2266 4518 2.161609 GCACAGATTAAGGTCCCGTTTG 59.838 50.000 0.00 0.00 0.00 2.93
2267 4519 2.224670 TGCACAGATTAAGGTCCCGTTT 60.225 45.455 0.00 0.00 0.00 3.60
2268 4520 1.349688 TGCACAGATTAAGGTCCCGTT 59.650 47.619 0.00 0.00 0.00 4.44
2269 4521 0.981183 TGCACAGATTAAGGTCCCGT 59.019 50.000 0.00 0.00 0.00 5.28
2270 4522 1.942657 CATGCACAGATTAAGGTCCCG 59.057 52.381 0.00 0.00 0.00 5.14
2271 4523 1.678101 GCATGCACAGATTAAGGTCCC 59.322 52.381 14.21 0.00 0.00 4.46
2272 4524 2.357009 CTGCATGCACAGATTAAGGTCC 59.643 50.000 18.46 0.00 40.25 4.46
2273 4525 3.273434 TCTGCATGCACAGATTAAGGTC 58.727 45.455 18.46 0.00 41.72 3.85
2274 4526 3.354948 TCTGCATGCACAGATTAAGGT 57.645 42.857 18.46 0.00 41.72 3.50
2275 4527 4.707030 TTTCTGCATGCACAGATTAAGG 57.293 40.909 18.46 3.63 45.75 2.69
2276 4528 5.060077 CGTTTTTCTGCATGCACAGATTAAG 59.940 40.000 18.46 4.45 45.75 1.85
2277 4529 4.916831 CGTTTTTCTGCATGCACAGATTAA 59.083 37.500 18.46 8.36 45.75 1.40
2278 4530 4.475028 CGTTTTTCTGCATGCACAGATTA 58.525 39.130 18.46 2.41 45.75 1.75
2279 4531 3.311106 CGTTTTTCTGCATGCACAGATT 58.689 40.909 18.46 0.00 45.75 2.40
2280 4532 2.923605 GCGTTTTTCTGCATGCACAGAT 60.924 45.455 18.46 0.00 45.75 2.90
2281 4533 1.600164 GCGTTTTTCTGCATGCACAGA 60.600 47.619 18.46 11.25 44.84 3.41
2419 4672 1.668047 GCAGCTTCCATGTTCTTGCAC 60.668 52.381 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.