Multiple sequence alignment - TraesCS1A01G179800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G179800 chr1A 100.000 2360 0 0 1 2360 324624680 324622321 0.000000e+00 4359.0
1 TraesCS1A01G179800 chr1A 99.518 1038 5 0 319 1356 324632366 324631329 0.000000e+00 1890.0
2 TraesCS1A01G179800 chr1A 95.537 1098 46 3 1 1095 324633471 324632374 0.000000e+00 1753.0
3 TraesCS1A01G179800 chr1A 99.624 797 3 0 1429 2225 324631132 324630336 0.000000e+00 1456.0
4 TraesCS1A01G179800 chr1A 92.857 560 37 3 1670 2226 93889787 93890346 0.000000e+00 809.0
5 TraesCS1A01G179800 chr1A 82.930 703 83 21 2 678 42678806 42678115 1.210000e-167 599.0
6 TraesCS1A01G179800 chr1A 82.621 702 87 17 2 678 42703500 42702809 2.610000e-164 588.0
7 TraesCS1A01G179800 chr1A 84.219 621 64 23 83 678 42732685 42732074 7.320000e-160 573.0
8 TraesCS1A01G179800 chr1A 81.212 495 73 19 1743 2225 246104122 246104608 4.760000e-102 381.0
9 TraesCS1A01G179800 chr1A 79.747 553 83 27 1690 2225 201847629 201848169 7.960000e-100 374.0
10 TraesCS1A01G179800 chr1A 78.881 554 80 27 1690 2228 170262232 170261701 8.080000e-90 340.0
11 TraesCS1A01G179800 chr1A 75.802 748 99 57 1502 2225 201198264 201198953 1.060000e-78 303.0
12 TraesCS1A01G179800 chr1A 77.636 550 84 32 1690 2225 200054680 200054156 4.930000e-77 298.0
13 TraesCS1A01G179800 chr1A 97.826 138 3 0 2223 2360 254615556 254615419 3.030000e-59 239.0
14 TraesCS1A01G179800 chr1A 92.857 126 9 0 1188 1313 476711088 476710963 1.440000e-42 183.0
15 TraesCS1A01G179800 chr1A 74.793 484 82 34 1670 2133 114665742 114666205 5.180000e-42 182.0
16 TraesCS1A01G179800 chr1A 92.308 78 6 0 1188 1265 246103453 246103530 6.890000e-21 111.0
17 TraesCS1A01G179800 chr1A 95.588 68 1 2 1435 1501 111422395 111422461 8.920000e-20 108.0
18 TraesCS1A01G179800 chr1A 95.588 68 1 2 1435 1501 111430274 111430340 8.920000e-20 108.0
19 TraesCS1A01G179800 chr1A 91.139 79 7 0 1188 1266 246111574 246111652 8.920000e-20 108.0
20 TraesCS1A01G179800 chr1A 95.385 65 1 2 1438 1501 69533672 69533609 4.150000e-18 102.0
21 TraesCS1A01G179800 chr1A 95.385 65 1 2 1438 1501 69560003 69559940 4.150000e-18 102.0
22 TraesCS1A01G179800 chr1A 95.385 65 1 2 1438 1501 69567791 69567728 4.150000e-18 102.0
23 TraesCS1A01G179800 chr1A 86.316 95 6 7 1409 1498 201847338 201847430 1.930000e-16 97.1
24 TraesCS1A01G179800 chr1A 85.263 95 7 7 1409 1498 201199352 201199444 8.980000e-15 91.6
25 TraesCS1A01G179800 chr1A 83.333 96 10 5 1461 1555 384069250 384069160 1.500000e-12 84.2
26 TraesCS1A01G179800 chr6A 90.110 728 40 14 1512 2225 252778144 252777435 0.000000e+00 917.0
27 TraesCS1A01G179800 chr6A 91.352 636 38 8 1592 2225 252786042 252785422 0.000000e+00 854.0
28 TraesCS1A01G179800 chr6A 88.472 720 39 27 1527 2225 385274816 385275512 0.000000e+00 830.0
29 TraesCS1A01G179800 chr6A 88.211 721 49 24 1527 2223 385282700 385283408 0.000000e+00 828.0
30 TraesCS1A01G179800 chr6A 86.240 734 52 30 1516 2226 486461183 486461890 0.000000e+00 750.0
31 TraesCS1A01G179800 chr6A 93.590 468 27 3 539 1004 182818317 182817851 0.000000e+00 695.0
32 TraesCS1A01G179800 chr6A 93.162 468 28 4 539 1004 397288175 397287710 0.000000e+00 684.0
33 TraesCS1A01G179800 chr6A 91.026 468 36 5 539 1004 297361145 297360682 5.540000e-176 627.0
34 TraesCS1A01G179800 chr6A 89.623 424 26 14 1516 1926 486434175 486434593 7.470000e-145 523.0
35 TraesCS1A01G179800 chr6A 86.810 326 30 11 49 366 407213365 407213045 3.730000e-93 351.0
36 TraesCS1A01G179800 chr6A 91.304 253 16 1 1188 1440 180292252 180292006 8.080000e-90 340.0
37 TraesCS1A01G179800 chr6A 93.103 232 16 0 1188 1419 355373376 355373607 8.080000e-90 340.0
38 TraesCS1A01G179800 chr6A 91.845 233 16 3 1188 1420 180284471 180284242 2.930000e-84 322.0
39 TraesCS1A01G179800 chr6A 90.041 241 18 5 1188 1428 355381305 355381539 8.190000e-80 307.0
40 TraesCS1A01G179800 chr6A 94.220 173 10 0 349 521 306122813 306122641 5.000000e-67 265.0
41 TraesCS1A01G179800 chr6A 93.651 126 8 0 1188 1313 433002057 433002182 3.100000e-44 189.0
42 TraesCS1A01G179800 chr6A 89.855 138 10 4 1401 1537 355373787 355373921 8.670000e-40 174.0
43 TraesCS1A01G179800 chr6A 91.270 126 8 1 1188 1313 432994864 432994986 4.030000e-38 169.0
44 TraesCS1A01G179800 chr6A 95.000 100 4 1 1439 1537 355381711 355381810 3.140000e-34 156.0
45 TraesCS1A01G179800 chr6A 100.000 75 0 0 1440 1514 531415677 531415603 3.160000e-29 139.0
46 TraesCS1A01G179800 chr6A 84.892 139 17 4 1188 1323 187104631 187104494 1.140000e-28 137.0
47 TraesCS1A01G179800 chr6A 92.958 71 4 1 1297 1367 252345849 252345780 4.150000e-18 102.0
48 TraesCS1A01G179800 chr6A 86.364 88 7 5 1415 1498 268944813 268944727 8.980000e-15 91.6
49 TraesCS1A01G179800 chr3A 89.821 727 49 12 1515 2225 437009711 437008994 0.000000e+00 909.0
50 TraesCS1A01G179800 chr3A 88.188 618 51 18 1617 2225 348057845 348057241 0.000000e+00 717.0
51 TraesCS1A01G179800 chr3A 87.540 618 55 18 1617 2225 348065686 348065082 0.000000e+00 695.0
52 TraesCS1A01G179800 chr3A 83.288 730 77 32 1526 2225 149629616 149630330 4.280000e-177 630.0
53 TraesCS1A01G179800 chr3A 81.831 732 80 35 1527 2225 149637681 149638392 1.220000e-157 566.0
54 TraesCS1A01G179800 chr3A 88.592 412 43 4 669 1077 250702297 250701887 4.530000e-137 497.0
55 TraesCS1A01G179800 chr3A 85.908 369 34 16 12 368 385035800 385036162 6.160000e-101 377.0
56 TraesCS1A01G179800 chr3A 83.978 362 36 16 1 351 169326074 169326424 6.290000e-86 327.0
57 TraesCS1A01G179800 chr3A 83.425 362 38 16 1 351 169369376 169369726 1.360000e-82 316.0
58 TraesCS1A01G179800 chr3A 89.320 206 19 2 318 522 333277076 333276873 3.010000e-64 255.0
59 TraesCS1A01G179800 chr3A 88.835 206 20 2 318 522 333288150 333287947 1.400000e-62 250.0
60 TraesCS1A01G179800 chr3A 97.826 138 3 0 2223 2360 210745498 210745361 3.030000e-59 239.0
61 TraesCS1A01G179800 chr3A 88.889 126 10 3 1084 1208 250701830 250701708 4.060000e-33 152.0
62 TraesCS1A01G179800 chr5A 95.009 581 21 1 1548 2120 314974993 314975573 0.000000e+00 905.0
63 TraesCS1A01G179800 chr5A 89.300 729 52 15 1517 2226 236857045 236856324 0.000000e+00 891.0
64 TraesCS1A01G179800 chr5A 87.895 727 59 19 1515 2225 159353080 159353793 0.000000e+00 828.0
65 TraesCS1A01G179800 chr5A 86.030 723 78 20 1517 2225 158022224 158021511 0.000000e+00 754.0
66 TraesCS1A01G179800 chr5A 92.521 468 31 4 539 1004 205525678 205526143 0.000000e+00 667.0
67 TraesCS1A01G179800 chr5A 79.907 861 110 52 1401 2225 588130162 588130995 7.320000e-160 573.0
68 TraesCS1A01G179800 chr5A 79.094 861 119 49 1401 2225 588122064 588122899 9.600000e-149 536.0
69 TraesCS1A01G179800 chr5A 91.304 299 19 7 913 1208 459395818 459395524 3.650000e-108 401.0
70 TraesCS1A01G179800 chr5A 77.918 711 110 43 1399 2084 160320159 160319471 1.310000e-107 399.0
71 TraesCS1A01G179800 chr5A 91.367 278 23 1 932 1208 160320589 160320312 1.710000e-101 379.0
72 TraesCS1A01G179800 chr5A 76.495 719 117 44 1440 2128 160328449 160327753 6.240000e-91 344.0
73 TraesCS1A01G179800 chr5A 80.652 460 62 21 14 457 441797332 441797780 4.860000e-87 331.0
74 TraesCS1A01G179800 chr5A 91.489 235 19 1 975 1208 160328875 160328641 2.930000e-84 322.0
75 TraesCS1A01G179800 chr5A 90.558 233 19 3 1188 1420 30495505 30495734 2.950000e-79 305.0
76 TraesCS1A01G179800 chr5A 90.233 215 21 0 1188 1402 132124956 132124742 4.970000e-72 281.0
77 TraesCS1A01G179800 chr5A 84.615 143 13 9 1400 1537 290168940 290168802 1.470000e-27 134.0
78 TraesCS1A01G179800 chr5A 86.508 126 8 9 1417 1537 290188389 290188268 1.900000e-26 130.0
79 TraesCS1A01G179800 chr7A 88.146 658 31 21 1515 2128 449863939 449864593 0.000000e+00 739.0
80 TraesCS1A01G179800 chr7A 85.057 609 55 21 1527 2105 645185211 645185813 2.610000e-164 588.0
81 TraesCS1A01G179800 chr7A 83.390 590 73 20 1650 2230 423931140 423931713 7.470000e-145 523.0
82 TraesCS1A01G179800 chr7A 84.225 374 41 15 1 366 396399837 396399474 4.830000e-92 348.0
83 TraesCS1A01G179800 chr7A 83.019 371 45 15 1 363 262979232 262979592 1.050000e-83 320.0
84 TraesCS1A01G179800 chr7A 83.065 372 43 17 1 363 262987066 262987426 1.050000e-83 320.0
85 TraesCS1A01G179800 chr7A 90.041 241 20 4 1188 1428 344267350 344267114 2.280000e-80 309.0
86 TraesCS1A01G179800 chr2A 91.453 468 34 5 539 1004 353290314 353289851 2.560000e-179 638.0
87 TraesCS1A01G179800 chr2A 89.744 468 37 7 539 1004 353298379 353297921 2.610000e-164 588.0
88 TraesCS1A01G179800 chr2A 89.286 140 12 3 1070 1208 460911891 460911754 3.120000e-39 172.0
89 TraesCS1A01G179800 chr4A 82.889 637 67 32 1517 2129 262454104 262454722 3.450000e-148 534.0
90 TraesCS1A01G179800 chr4A 90.970 299 20 7 913 1208 414577628 414577334 1.700000e-106 396.0
91 TraesCS1A01G179800 chr4A 90.987 233 18 3 1188 1420 373391744 373391973 6.330000e-81 311.0
92 TraesCS1A01G179800 chr4A 76.996 526 76 29 24 520 267262569 267263078 2.330000e-65 259.0
93 TraesCS1A01G179800 chr4A 92.647 136 8 2 1075 1209 324901132 324900998 6.660000e-46 195.0
94 TraesCS1A01G179800 chr4A 92.647 136 8 2 1075 1209 324909129 324908995 6.660000e-46 195.0
95 TraesCS1A01G179800 chr4D 98.540 137 2 0 2223 2359 352175354 352175218 2.340000e-60 243.0
96 TraesCS1A01G179800 chr7D 97.826 138 3 0 2223 2360 470801552 470801689 3.030000e-59 239.0
97 TraesCS1A01G179800 chr5D 97.826 138 3 0 2223 2360 59404769 59404632 3.030000e-59 239.0
98 TraesCS1A01G179800 chr5D 97.826 138 3 0 2223 2360 227318006 227317869 3.030000e-59 239.0
99 TraesCS1A01G179800 chr5D 97.826 138 3 0 2223 2360 450875500 450875363 3.030000e-59 239.0
100 TraesCS1A01G179800 chr3D 97.826 138 3 0 2223 2360 109030328 109030465 3.030000e-59 239.0
101 TraesCS1A01G179800 chr1B 97.826 138 3 0 2223 2360 290467811 290467674 3.030000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G179800 chr1A 324622321 324624680 2359 True 4359.000000 4359 100.000000 1 2360 1 chr1A.!!$R10 2359
1 TraesCS1A01G179800 chr1A 324630336 324633471 3135 True 1699.666667 1890 98.226333 1 2225 3 chr1A.!!$R13 2224
2 TraesCS1A01G179800 chr1A 93889787 93890346 559 False 809.000000 809 92.857000 1670 2226 1 chr1A.!!$F1 556
3 TraesCS1A01G179800 chr1A 42678115 42678806 691 True 599.000000 599 82.930000 2 678 1 chr1A.!!$R1 676
4 TraesCS1A01G179800 chr1A 42702809 42703500 691 True 588.000000 588 82.621000 2 678 1 chr1A.!!$R2 676
5 TraesCS1A01G179800 chr1A 42732074 42732685 611 True 573.000000 573 84.219000 83 678 1 chr1A.!!$R3 595
6 TraesCS1A01G179800 chr1A 170261701 170262232 531 True 340.000000 340 78.881000 1690 2228 1 chr1A.!!$R7 538
7 TraesCS1A01G179800 chr1A 200054156 200054680 524 True 298.000000 298 77.636000 1690 2225 1 chr1A.!!$R8 535
8 TraesCS1A01G179800 chr1A 246103453 246104608 1155 False 246.000000 381 86.760000 1188 2225 2 chr1A.!!$F8 1037
9 TraesCS1A01G179800 chr1A 201847338 201848169 831 False 235.550000 374 83.031500 1409 2225 2 chr1A.!!$F7 816
10 TraesCS1A01G179800 chr6A 252777435 252778144 709 True 917.000000 917 90.110000 1512 2225 1 chr6A.!!$R6 713
11 TraesCS1A01G179800 chr6A 252785422 252786042 620 True 854.000000 854 91.352000 1592 2225 1 chr6A.!!$R7 633
12 TraesCS1A01G179800 chr6A 385274816 385275512 696 False 830.000000 830 88.472000 1527 2225 1 chr6A.!!$F1 698
13 TraesCS1A01G179800 chr6A 385282700 385283408 708 False 828.000000 828 88.211000 1527 2223 1 chr6A.!!$F2 696
14 TraesCS1A01G179800 chr6A 486461183 486461890 707 False 750.000000 750 86.240000 1516 2226 1 chr6A.!!$F6 710
15 TraesCS1A01G179800 chr6A 355373376 355373921 545 False 257.000000 340 91.479000 1188 1537 2 chr6A.!!$F7 349
16 TraesCS1A01G179800 chr6A 355381305 355381810 505 False 231.500000 307 92.520500 1188 1537 2 chr6A.!!$F8 349
17 TraesCS1A01G179800 chr3A 437008994 437009711 717 True 909.000000 909 89.821000 1515 2225 1 chr3A.!!$R6 710
18 TraesCS1A01G179800 chr3A 348057241 348057845 604 True 717.000000 717 88.188000 1617 2225 1 chr3A.!!$R4 608
19 TraesCS1A01G179800 chr3A 348065082 348065686 604 True 695.000000 695 87.540000 1617 2225 1 chr3A.!!$R5 608
20 TraesCS1A01G179800 chr3A 149629616 149630330 714 False 630.000000 630 83.288000 1526 2225 1 chr3A.!!$F1 699
21 TraesCS1A01G179800 chr3A 149637681 149638392 711 False 566.000000 566 81.831000 1527 2225 1 chr3A.!!$F2 698
22 TraesCS1A01G179800 chr3A 250701708 250702297 589 True 324.500000 497 88.740500 669 1208 2 chr3A.!!$R7 539
23 TraesCS1A01G179800 chr5A 314974993 314975573 580 False 905.000000 905 95.009000 1548 2120 1 chr5A.!!$F4 572
24 TraesCS1A01G179800 chr5A 236856324 236857045 721 True 891.000000 891 89.300000 1517 2226 1 chr5A.!!$R3 709
25 TraesCS1A01G179800 chr5A 159353080 159353793 713 False 828.000000 828 87.895000 1515 2225 1 chr5A.!!$F2 710
26 TraesCS1A01G179800 chr5A 158021511 158022224 713 True 754.000000 754 86.030000 1517 2225 1 chr5A.!!$R2 708
27 TraesCS1A01G179800 chr5A 588130162 588130995 833 False 573.000000 573 79.907000 1401 2225 1 chr5A.!!$F7 824
28 TraesCS1A01G179800 chr5A 588122064 588122899 835 False 536.000000 536 79.094000 1401 2225 1 chr5A.!!$F6 824
29 TraesCS1A01G179800 chr5A 160319471 160320589 1118 True 389.000000 399 84.642500 932 2084 2 chr5A.!!$R7 1152
30 TraesCS1A01G179800 chr5A 160327753 160328875 1122 True 333.000000 344 83.992000 975 2128 2 chr5A.!!$R8 1153
31 TraesCS1A01G179800 chr7A 449863939 449864593 654 False 739.000000 739 88.146000 1515 2128 1 chr7A.!!$F4 613
32 TraesCS1A01G179800 chr7A 645185211 645185813 602 False 588.000000 588 85.057000 1527 2105 1 chr7A.!!$F5 578
33 TraesCS1A01G179800 chr7A 423931140 423931713 573 False 523.000000 523 83.390000 1650 2230 1 chr7A.!!$F3 580
34 TraesCS1A01G179800 chr4A 262454104 262454722 618 False 534.000000 534 82.889000 1517 2129 1 chr4A.!!$F1 612
35 TraesCS1A01G179800 chr4A 267262569 267263078 509 False 259.000000 259 76.996000 24 520 1 chr4A.!!$F2 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 111 0.321564 CGATGCAAAGGGGAGTGTGA 60.322 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 2594 0.032615 ATCTCGCTTGACCTCCTCCT 60.033 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 111 0.321564 CGATGCAAAGGGGAGTGTGA 60.322 55.000 0.00 0.00 0.00 3.58
165 170 1.683441 GGGTTCCCATGGTTCGACT 59.317 57.895 11.73 0.00 0.00 4.18
168 173 1.375396 TTCCCATGGTTCGACTGCG 60.375 57.895 11.73 0.00 39.35 5.18
176 181 1.563173 GTTCGACTGCGGTGTCAAC 59.437 57.895 0.80 0.00 36.82 3.18
276 282 2.022129 GCATCGTTCCGGCGGATAG 61.022 63.158 31.59 25.14 0.00 2.08
299 305 2.295909 CCTTTCAAGGGTGCATTTTCGA 59.704 45.455 0.00 0.00 42.66 3.71
345 351 1.457346 GGGAAGTAGACGTTCTCGGA 58.543 55.000 0.00 0.00 41.85 4.55
363 394 1.543358 GGAACGGTCGTAGAGGAAGTT 59.457 52.381 0.00 0.00 36.95 2.66
369 400 2.067013 GTCGTAGAGGAAGTTGTTGCC 58.933 52.381 0.00 0.00 36.95 4.52
414 445 1.854126 CGACGGTAGTTGTTCACGTTT 59.146 47.619 0.00 0.00 37.96 3.60
1391 2370 2.285368 AGAGATGGGGGTCGGCAA 60.285 61.111 0.00 0.00 0.00 4.52
1422 2594 3.711704 GAGAGAGAGAGAGAGAGAGGGAA 59.288 52.174 0.00 0.00 0.00 3.97
1423 2595 3.713764 AGAGAGAGAGAGAGAGAGGGAAG 59.286 52.174 0.00 0.00 0.00 3.46
1424 2596 2.780010 AGAGAGAGAGAGAGAGGGAAGG 59.220 54.545 0.00 0.00 0.00 3.46
1425 2597 2.777692 GAGAGAGAGAGAGAGGGAAGGA 59.222 54.545 0.00 0.00 0.00 3.36
1426 2598 2.780010 AGAGAGAGAGAGAGGGAAGGAG 59.220 54.545 0.00 0.00 0.00 3.69
1427 2599 1.852965 AGAGAGAGAGAGGGAAGGAGG 59.147 57.143 0.00 0.00 0.00 4.30
1433 2605 0.336737 GAGAGGGAAGGAGGAGGTCA 59.663 60.000 0.00 0.00 0.00 4.02
2230 3683 0.673644 CTTGGGGCGTCACACCTAAG 60.674 60.000 0.00 0.00 38.67 2.18
2231 3684 2.436115 GGGGCGTCACACCTAAGC 60.436 66.667 0.00 0.00 0.00 3.09
2232 3685 2.345991 GGGCGTCACACCTAAGCA 59.654 61.111 0.00 0.00 0.00 3.91
2233 3686 2.033194 GGGCGTCACACCTAAGCAC 61.033 63.158 0.00 0.00 0.00 4.40
2234 3687 2.033194 GGCGTCACACCTAAGCACC 61.033 63.158 0.00 0.00 0.00 5.01
2235 3688 2.380410 GCGTCACACCTAAGCACCG 61.380 63.158 0.00 0.00 0.00 4.94
2236 3689 1.736645 CGTCACACCTAAGCACCGG 60.737 63.158 0.00 0.00 0.00 5.28
2237 3690 1.370064 GTCACACCTAAGCACCGGT 59.630 57.895 0.00 0.00 0.00 5.28
2238 3691 0.669625 GTCACACCTAAGCACCGGTC 60.670 60.000 2.59 0.00 0.00 4.79
2239 3692 1.375523 CACACCTAAGCACCGGTCC 60.376 63.158 2.59 0.00 0.00 4.46
2240 3693 1.839747 ACACCTAAGCACCGGTCCA 60.840 57.895 2.59 0.00 0.00 4.02
2241 3694 1.375523 CACCTAAGCACCGGTCCAC 60.376 63.158 2.59 0.00 0.00 4.02
2242 3695 2.267961 CCTAAGCACCGGTCCACC 59.732 66.667 2.59 0.00 0.00 4.61
2243 3696 2.267961 CTAAGCACCGGTCCACCC 59.732 66.667 2.59 0.00 0.00 4.61
2244 3697 2.527123 TAAGCACCGGTCCACCCA 60.527 61.111 2.59 0.00 0.00 4.51
2245 3698 2.798148 CTAAGCACCGGTCCACCCAC 62.798 65.000 2.59 0.00 0.00 4.61
2247 3700 4.344865 GCACCGGTCCACCCACAT 62.345 66.667 2.59 0.00 0.00 3.21
2248 3701 2.961893 GCACCGGTCCACCCACATA 61.962 63.158 2.59 0.00 0.00 2.29
2249 3702 1.912220 CACCGGTCCACCCACATAT 59.088 57.895 2.59 0.00 0.00 1.78
2250 3703 0.179056 CACCGGTCCACCCACATATC 60.179 60.000 2.59 0.00 0.00 1.63
2251 3704 0.619255 ACCGGTCCACCCACATATCA 60.619 55.000 0.00 0.00 0.00 2.15
2252 3705 0.544223 CCGGTCCACCCACATATCAA 59.456 55.000 0.00 0.00 0.00 2.57
2253 3706 1.065053 CCGGTCCACCCACATATCAAA 60.065 52.381 0.00 0.00 0.00 2.69
2254 3707 2.422803 CCGGTCCACCCACATATCAAAT 60.423 50.000 0.00 0.00 0.00 2.32
2255 3708 3.287222 CGGTCCACCCACATATCAAATT 58.713 45.455 0.00 0.00 0.00 1.82
2256 3709 4.456535 CGGTCCACCCACATATCAAATTA 58.543 43.478 0.00 0.00 0.00 1.40
2257 3710 5.070001 CGGTCCACCCACATATCAAATTAT 58.930 41.667 0.00 0.00 0.00 1.28
2258 3711 5.181245 CGGTCCACCCACATATCAAATTATC 59.819 44.000 0.00 0.00 0.00 1.75
2259 3712 6.068010 GGTCCACCCACATATCAAATTATCA 58.932 40.000 0.00 0.00 0.00 2.15
2260 3713 6.549364 GGTCCACCCACATATCAAATTATCAA 59.451 38.462 0.00 0.00 0.00 2.57
2261 3714 7.069331 GGTCCACCCACATATCAAATTATCAAA 59.931 37.037 0.00 0.00 0.00 2.69
2262 3715 8.137437 GTCCACCCACATATCAAATTATCAAAG 58.863 37.037 0.00 0.00 0.00 2.77
2263 3716 7.838696 TCCACCCACATATCAAATTATCAAAGT 59.161 33.333 0.00 0.00 0.00 2.66
2264 3717 9.130661 CCACCCACATATCAAATTATCAAAGTA 57.869 33.333 0.00 0.00 0.00 2.24
2266 3719 8.850156 ACCCACATATCAAATTATCAAAGTAGC 58.150 33.333 0.00 0.00 0.00 3.58
2267 3720 8.849168 CCCACATATCAAATTATCAAAGTAGCA 58.151 33.333 0.00 0.00 0.00 3.49
2274 3727 9.979578 ATCAAATTATCAAAGTAGCAAACACAA 57.020 25.926 0.00 0.00 0.00 3.33
2275 3728 9.809096 TCAAATTATCAAAGTAGCAAACACAAA 57.191 25.926 0.00 0.00 0.00 2.83
2278 3731 8.673626 ATTATCAAAGTAGCAAACACAAATCG 57.326 30.769 0.00 0.00 0.00 3.34
2279 3732 5.743026 TCAAAGTAGCAAACACAAATCGA 57.257 34.783 0.00 0.00 0.00 3.59
2280 3733 6.125327 TCAAAGTAGCAAACACAAATCGAA 57.875 33.333 0.00 0.00 0.00 3.71
2281 3734 6.734137 TCAAAGTAGCAAACACAAATCGAAT 58.266 32.000 0.00 0.00 0.00 3.34
2282 3735 6.855914 TCAAAGTAGCAAACACAAATCGAATC 59.144 34.615 0.00 0.00 0.00 2.52
2283 3736 5.940192 AGTAGCAAACACAAATCGAATCA 57.060 34.783 0.00 0.00 0.00 2.57
2284 3737 6.312399 AGTAGCAAACACAAATCGAATCAA 57.688 33.333 0.00 0.00 0.00 2.57
2285 3738 6.142817 AGTAGCAAACACAAATCGAATCAAC 58.857 36.000 0.00 0.00 0.00 3.18
2286 3739 4.930963 AGCAAACACAAATCGAATCAACA 58.069 34.783 0.00 0.00 0.00 3.33
2287 3740 4.977963 AGCAAACACAAATCGAATCAACAG 59.022 37.500 0.00 0.00 0.00 3.16
2288 3741 4.148696 GCAAACACAAATCGAATCAACAGG 59.851 41.667 0.00 0.00 0.00 4.00
2289 3742 5.518812 CAAACACAAATCGAATCAACAGGA 58.481 37.500 0.00 0.00 0.00 3.86
2290 3743 5.964958 AACACAAATCGAATCAACAGGAT 57.035 34.783 0.00 0.00 38.05 3.24
2291 3744 5.300969 ACACAAATCGAATCAACAGGATG 57.699 39.130 0.00 0.00 46.00 3.51
2292 3745 5.003160 ACACAAATCGAATCAACAGGATGA 58.997 37.500 0.00 0.00 39.69 2.92
2293 3746 5.473162 ACACAAATCGAATCAACAGGATGAA 59.527 36.000 0.00 0.00 39.69 2.57
2294 3747 6.016360 ACACAAATCGAATCAACAGGATGAAA 60.016 34.615 0.00 0.00 39.69 2.69
2295 3748 6.525628 CACAAATCGAATCAACAGGATGAAAG 59.474 38.462 0.00 0.00 39.69 2.62
2296 3749 6.207417 ACAAATCGAATCAACAGGATGAAAGT 59.793 34.615 0.00 0.00 39.69 2.66
2297 3750 5.808042 ATCGAATCAACAGGATGAAAGTG 57.192 39.130 0.00 0.00 39.69 3.16
2298 3751 4.893608 TCGAATCAACAGGATGAAAGTGA 58.106 39.130 0.00 0.00 39.69 3.41
2299 3752 4.690748 TCGAATCAACAGGATGAAAGTGAC 59.309 41.667 0.00 0.00 39.69 3.67
2300 3753 4.692625 CGAATCAACAGGATGAAAGTGACT 59.307 41.667 0.00 0.00 39.69 3.41
2301 3754 5.869344 CGAATCAACAGGATGAAAGTGACTA 59.131 40.000 0.00 0.00 39.69 2.59
2302 3755 6.035435 CGAATCAACAGGATGAAAGTGACTAG 59.965 42.308 0.00 0.00 39.69 2.57
2303 3756 6.611613 ATCAACAGGATGAAAGTGACTAGA 57.388 37.500 0.00 0.00 39.69 2.43
2304 3757 6.611613 TCAACAGGATGAAAGTGACTAGAT 57.388 37.500 0.00 0.00 39.69 1.98
2305 3758 6.401394 TCAACAGGATGAAAGTGACTAGATG 58.599 40.000 0.00 0.00 39.69 2.90
2306 3759 6.211384 TCAACAGGATGAAAGTGACTAGATGA 59.789 38.462 0.00 0.00 39.69 2.92
2307 3760 6.611613 ACAGGATGAAAGTGACTAGATGAA 57.388 37.500 0.00 0.00 39.69 2.57
2308 3761 7.009179 ACAGGATGAAAGTGACTAGATGAAA 57.991 36.000 0.00 0.00 39.69 2.69
2309 3762 7.628234 ACAGGATGAAAGTGACTAGATGAAAT 58.372 34.615 0.00 0.00 39.69 2.17
2310 3763 8.105829 ACAGGATGAAAGTGACTAGATGAAATT 58.894 33.333 0.00 0.00 39.69 1.82
2311 3764 8.610896 CAGGATGAAAGTGACTAGATGAAATTC 58.389 37.037 0.00 0.00 39.69 2.17
2312 3765 7.772757 AGGATGAAAGTGACTAGATGAAATTCC 59.227 37.037 0.00 0.00 0.00 3.01
2313 3766 7.012799 GGATGAAAGTGACTAGATGAAATTCCC 59.987 40.741 0.00 0.00 0.00 3.97
2314 3767 5.874810 TGAAAGTGACTAGATGAAATTCCCG 59.125 40.000 0.00 0.00 0.00 5.14
2315 3768 5.422214 AAGTGACTAGATGAAATTCCCGT 57.578 39.130 0.00 0.00 0.00 5.28
2316 3769 4.759782 AGTGACTAGATGAAATTCCCGTG 58.240 43.478 0.00 0.00 0.00 4.94
2317 3770 4.223032 AGTGACTAGATGAAATTCCCGTGT 59.777 41.667 0.00 0.00 0.00 4.49
2318 3771 5.421056 AGTGACTAGATGAAATTCCCGTGTA 59.579 40.000 0.00 0.00 0.00 2.90
2319 3772 5.519206 GTGACTAGATGAAATTCCCGTGTAC 59.481 44.000 0.00 0.00 0.00 2.90
2320 3773 5.019785 ACTAGATGAAATTCCCGTGTACC 57.980 43.478 0.00 0.00 0.00 3.34
2321 3774 3.277142 AGATGAAATTCCCGTGTACCC 57.723 47.619 0.00 0.00 0.00 3.69
2322 3775 2.844348 AGATGAAATTCCCGTGTACCCT 59.156 45.455 0.00 0.00 0.00 4.34
2323 3776 2.773993 TGAAATTCCCGTGTACCCTC 57.226 50.000 0.00 0.00 0.00 4.30
2324 3777 1.979308 TGAAATTCCCGTGTACCCTCA 59.021 47.619 0.00 0.00 0.00 3.86
2325 3778 2.372504 TGAAATTCCCGTGTACCCTCAA 59.627 45.455 0.00 0.00 0.00 3.02
2326 3779 2.781681 AATTCCCGTGTACCCTCAAG 57.218 50.000 0.00 0.00 0.00 3.02
2327 3780 1.946984 ATTCCCGTGTACCCTCAAGA 58.053 50.000 0.00 0.00 0.00 3.02
2328 3781 1.719529 TTCCCGTGTACCCTCAAGAA 58.280 50.000 0.00 0.00 0.00 2.52
2329 3782 0.971386 TCCCGTGTACCCTCAAGAAC 59.029 55.000 0.00 0.00 0.00 3.01
2330 3783 0.682852 CCCGTGTACCCTCAAGAACA 59.317 55.000 0.00 0.00 0.00 3.18
2331 3784 1.607251 CCCGTGTACCCTCAAGAACAC 60.607 57.143 0.00 0.00 39.04 3.32
2332 3785 1.343465 CCGTGTACCCTCAAGAACACT 59.657 52.381 0.00 0.00 40.01 3.55
2333 3786 2.224209 CCGTGTACCCTCAAGAACACTT 60.224 50.000 0.00 0.00 40.01 3.16
2334 3787 3.463944 CGTGTACCCTCAAGAACACTTT 58.536 45.455 0.00 0.00 40.01 2.66
2335 3788 3.247648 CGTGTACCCTCAAGAACACTTTG 59.752 47.826 0.00 0.00 40.01 2.77
2336 3789 3.003378 GTGTACCCTCAAGAACACTTTGC 59.997 47.826 0.00 0.00 39.27 3.68
2337 3790 2.736670 ACCCTCAAGAACACTTTGCT 57.263 45.000 0.00 0.00 0.00 3.91
2338 3791 3.018423 ACCCTCAAGAACACTTTGCTT 57.982 42.857 0.00 0.00 0.00 3.91
2339 3792 4.164843 ACCCTCAAGAACACTTTGCTTA 57.835 40.909 0.00 0.00 0.00 3.09
2340 3793 4.729868 ACCCTCAAGAACACTTTGCTTAT 58.270 39.130 0.00 0.00 0.00 1.73
2341 3794 4.762251 ACCCTCAAGAACACTTTGCTTATC 59.238 41.667 0.00 0.00 0.00 1.75
2342 3795 4.761739 CCCTCAAGAACACTTTGCTTATCA 59.238 41.667 0.00 0.00 0.00 2.15
2343 3796 5.416952 CCCTCAAGAACACTTTGCTTATCAT 59.583 40.000 0.00 0.00 0.00 2.45
2344 3797 6.599244 CCCTCAAGAACACTTTGCTTATCATA 59.401 38.462 0.00 0.00 0.00 2.15
2345 3798 7.121168 CCCTCAAGAACACTTTGCTTATCATAA 59.879 37.037 0.00 0.00 0.00 1.90
2346 3799 8.180267 CCTCAAGAACACTTTGCTTATCATAAG 58.820 37.037 0.00 0.00 0.00 1.73
2347 3800 8.846943 TCAAGAACACTTTGCTTATCATAAGA 57.153 30.769 8.74 0.00 0.00 2.10
2348 3801 8.939929 TCAAGAACACTTTGCTTATCATAAGAG 58.060 33.333 8.74 0.00 0.00 2.85
2349 3802 8.939929 CAAGAACACTTTGCTTATCATAAGAGA 58.060 33.333 8.74 0.00 0.00 3.10
2350 3803 8.485976 AGAACACTTTGCTTATCATAAGAGAC 57.514 34.615 8.74 0.00 0.00 3.36
2351 3804 7.550906 AGAACACTTTGCTTATCATAAGAGACC 59.449 37.037 8.74 0.00 0.00 3.85
2352 3805 5.812642 ACACTTTGCTTATCATAAGAGACCG 59.187 40.000 8.74 0.00 0.00 4.79
2353 3806 5.812642 CACTTTGCTTATCATAAGAGACCGT 59.187 40.000 8.74 0.00 0.00 4.83
2354 3807 6.313905 CACTTTGCTTATCATAAGAGACCGTT 59.686 38.462 8.74 0.00 0.00 4.44
2355 3808 6.879458 ACTTTGCTTATCATAAGAGACCGTTT 59.121 34.615 8.74 0.00 0.00 3.60
2356 3809 7.390718 ACTTTGCTTATCATAAGAGACCGTTTT 59.609 33.333 8.74 0.00 0.00 2.43
2357 3810 6.662414 TGCTTATCATAAGAGACCGTTTTG 57.338 37.500 8.74 0.00 0.00 2.44
2358 3811 5.584649 TGCTTATCATAAGAGACCGTTTTGG 59.415 40.000 8.74 0.00 46.41 3.28
2359 3812 5.504173 GCTTATCATAAGAGACCGTTTTGGC 60.504 44.000 8.74 0.00 43.94 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.484653 GTGGCACCTCCCTTTTGTTTT 59.515 47.619 6.29 0.00 0.00 2.43
12 13 2.115266 CCGTGGCACCTCCCTTTT 59.885 61.111 12.86 0.00 0.00 2.27
108 111 0.813184 CCATCTTTTGCACGCATCCT 59.187 50.000 0.00 0.00 0.00 3.24
165 170 2.798364 TTCCCTCGTTGACACCGCA 61.798 57.895 0.00 0.00 0.00 5.69
168 173 0.942252 GTTGTTCCCTCGTTGACACC 59.058 55.000 0.00 0.00 0.00 4.16
176 181 2.473984 GTGAACGTTAGTTGTTCCCTCG 59.526 50.000 0.00 0.00 43.95 4.63
276 282 3.653344 GAAAATGCACCCTTGAAAGGTC 58.347 45.455 8.26 0.00 44.98 3.85
299 305 1.081376 CACCGAACTCGACTCGCTT 60.081 57.895 0.00 0.00 43.02 4.68
345 351 1.959282 ACAACTTCCTCTACGACCGTT 59.041 47.619 0.00 0.00 0.00 4.44
369 400 1.200020 GGATCCGACAAGTTTGCAAGG 59.800 52.381 0.00 0.00 0.00 3.61
414 445 1.820519 ACGGGAACTTGTGCGACTATA 59.179 47.619 0.00 0.00 0.00 1.31
1391 2370 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1422 2594 0.032615 ATCTCGCTTGACCTCCTCCT 60.033 55.000 0.00 0.00 0.00 3.69
1423 2595 0.103937 CATCTCGCTTGACCTCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
1424 2596 0.103937 CCATCTCGCTTGACCTCCTC 59.896 60.000 0.00 0.00 0.00 3.71
1425 2597 1.333636 CCCATCTCGCTTGACCTCCT 61.334 60.000 0.00 0.00 0.00 3.69
1426 2598 1.144936 CCCATCTCGCTTGACCTCC 59.855 63.158 0.00 0.00 0.00 4.30
1427 2599 0.755686 ATCCCATCTCGCTTGACCTC 59.244 55.000 0.00 0.00 0.00 3.85
1433 2605 3.142393 CCCGATCCCATCTCGCTT 58.858 61.111 0.00 0.00 34.84 4.68
1580 2876 2.344872 GCCTGCCCTTTTGCCTTG 59.655 61.111 0.00 0.00 0.00 3.61
2230 3683 2.265467 ATATGTGGGTGGACCGGTGC 62.265 60.000 20.69 20.69 44.64 5.01
2231 3684 0.179056 GATATGTGGGTGGACCGGTG 60.179 60.000 14.63 0.00 44.64 4.94
2232 3685 0.619255 TGATATGTGGGTGGACCGGT 60.619 55.000 6.92 6.92 44.64 5.28
2233 3686 0.544223 TTGATATGTGGGTGGACCGG 59.456 55.000 0.00 0.00 44.64 5.28
2234 3687 2.411628 TTTGATATGTGGGTGGACCG 57.588 50.000 0.00 0.00 44.64 4.79
2235 3688 6.068010 TGATAATTTGATATGTGGGTGGACC 58.932 40.000 0.00 0.00 40.81 4.46
2236 3689 7.581213 TTGATAATTTGATATGTGGGTGGAC 57.419 36.000 0.00 0.00 0.00 4.02
2237 3690 7.838696 ACTTTGATAATTTGATATGTGGGTGGA 59.161 33.333 0.00 0.00 0.00 4.02
2238 3691 8.010733 ACTTTGATAATTTGATATGTGGGTGG 57.989 34.615 0.00 0.00 0.00 4.61
2240 3693 8.850156 GCTACTTTGATAATTTGATATGTGGGT 58.150 33.333 0.00 0.00 0.00 4.51
2241 3694 8.849168 TGCTACTTTGATAATTTGATATGTGGG 58.151 33.333 0.00 0.00 0.00 4.61
2248 3701 9.979578 TTGTGTTTGCTACTTTGATAATTTGAT 57.020 25.926 0.00 0.00 0.00 2.57
2249 3702 9.809096 TTTGTGTTTGCTACTTTGATAATTTGA 57.191 25.926 0.00 0.00 0.00 2.69
2252 3705 9.128107 CGATTTGTGTTTGCTACTTTGATAATT 57.872 29.630 0.00 0.00 0.00 1.40
2253 3706 8.511321 TCGATTTGTGTTTGCTACTTTGATAAT 58.489 29.630 0.00 0.00 0.00 1.28
2254 3707 7.866729 TCGATTTGTGTTTGCTACTTTGATAA 58.133 30.769 0.00 0.00 0.00 1.75
2255 3708 7.428282 TCGATTTGTGTTTGCTACTTTGATA 57.572 32.000 0.00 0.00 0.00 2.15
2256 3709 6.312399 TCGATTTGTGTTTGCTACTTTGAT 57.688 33.333 0.00 0.00 0.00 2.57
2257 3710 5.743026 TCGATTTGTGTTTGCTACTTTGA 57.257 34.783 0.00 0.00 0.00 2.69
2258 3711 6.636447 TGATTCGATTTGTGTTTGCTACTTTG 59.364 34.615 0.00 0.00 0.00 2.77
2259 3712 6.734137 TGATTCGATTTGTGTTTGCTACTTT 58.266 32.000 0.00 0.00 0.00 2.66
2260 3713 6.312399 TGATTCGATTTGTGTTTGCTACTT 57.688 33.333 0.00 0.00 0.00 2.24
2261 3714 5.940192 TGATTCGATTTGTGTTTGCTACT 57.060 34.783 0.00 0.00 0.00 2.57
2262 3715 5.912396 TGTTGATTCGATTTGTGTTTGCTAC 59.088 36.000 0.00 0.00 0.00 3.58
2263 3716 6.066054 TGTTGATTCGATTTGTGTTTGCTA 57.934 33.333 0.00 0.00 0.00 3.49
2264 3717 4.930963 TGTTGATTCGATTTGTGTTTGCT 58.069 34.783 0.00 0.00 0.00 3.91
2265 3718 4.148696 CCTGTTGATTCGATTTGTGTTTGC 59.851 41.667 0.00 0.00 0.00 3.68
2266 3719 5.518812 TCCTGTTGATTCGATTTGTGTTTG 58.481 37.500 0.00 0.00 0.00 2.93
2267 3720 5.766150 TCCTGTTGATTCGATTTGTGTTT 57.234 34.783 0.00 0.00 0.00 2.83
2268 3721 5.473162 TCATCCTGTTGATTCGATTTGTGTT 59.527 36.000 0.00 0.00 0.00 3.32
2269 3722 5.003160 TCATCCTGTTGATTCGATTTGTGT 58.997 37.500 0.00 0.00 0.00 3.72
2270 3723 5.550232 TCATCCTGTTGATTCGATTTGTG 57.450 39.130 0.00 0.00 0.00 3.33
2271 3724 6.207417 ACTTTCATCCTGTTGATTCGATTTGT 59.793 34.615 0.00 0.00 0.00 2.83
2272 3725 6.525628 CACTTTCATCCTGTTGATTCGATTTG 59.474 38.462 0.00 0.00 0.00 2.32
2273 3726 6.430925 TCACTTTCATCCTGTTGATTCGATTT 59.569 34.615 0.00 0.00 0.00 2.17
2274 3727 5.939883 TCACTTTCATCCTGTTGATTCGATT 59.060 36.000 0.00 0.00 0.00 3.34
2275 3728 5.352569 GTCACTTTCATCCTGTTGATTCGAT 59.647 40.000 0.00 0.00 0.00 3.59
2276 3729 4.690748 GTCACTTTCATCCTGTTGATTCGA 59.309 41.667 0.00 0.00 0.00 3.71
2277 3730 4.692625 AGTCACTTTCATCCTGTTGATTCG 59.307 41.667 0.00 0.00 0.00 3.34
2278 3731 7.099764 TCTAGTCACTTTCATCCTGTTGATTC 58.900 38.462 0.00 0.00 0.00 2.52
2279 3732 7.009179 TCTAGTCACTTTCATCCTGTTGATT 57.991 36.000 0.00 0.00 0.00 2.57
2280 3733 6.611613 TCTAGTCACTTTCATCCTGTTGAT 57.388 37.500 0.00 0.00 0.00 2.57
2281 3734 6.211384 TCATCTAGTCACTTTCATCCTGTTGA 59.789 38.462 0.00 0.00 0.00 3.18
2282 3735 6.401394 TCATCTAGTCACTTTCATCCTGTTG 58.599 40.000 0.00 0.00 0.00 3.33
2283 3736 6.611613 TCATCTAGTCACTTTCATCCTGTT 57.388 37.500 0.00 0.00 0.00 3.16
2284 3737 6.611613 TTCATCTAGTCACTTTCATCCTGT 57.388 37.500 0.00 0.00 0.00 4.00
2285 3738 8.503458 AATTTCATCTAGTCACTTTCATCCTG 57.497 34.615 0.00 0.00 0.00 3.86
2286 3739 7.772757 GGAATTTCATCTAGTCACTTTCATCCT 59.227 37.037 0.00 0.00 0.00 3.24
2287 3740 7.012799 GGGAATTTCATCTAGTCACTTTCATCC 59.987 40.741 0.00 0.00 0.00 3.51
2288 3741 7.254590 CGGGAATTTCATCTAGTCACTTTCATC 60.255 40.741 0.00 0.00 0.00 2.92
2289 3742 6.540189 CGGGAATTTCATCTAGTCACTTTCAT 59.460 38.462 0.00 0.00 0.00 2.57
2290 3743 5.874810 CGGGAATTTCATCTAGTCACTTTCA 59.125 40.000 0.00 0.00 0.00 2.69
2291 3744 5.875359 ACGGGAATTTCATCTAGTCACTTTC 59.125 40.000 0.00 0.00 0.00 2.62
2292 3745 5.643777 CACGGGAATTTCATCTAGTCACTTT 59.356 40.000 0.00 0.00 0.00 2.66
2293 3746 5.178797 CACGGGAATTTCATCTAGTCACTT 58.821 41.667 0.00 0.00 0.00 3.16
2294 3747 4.223032 ACACGGGAATTTCATCTAGTCACT 59.777 41.667 0.00 0.00 0.00 3.41
2295 3748 4.504858 ACACGGGAATTTCATCTAGTCAC 58.495 43.478 0.00 0.00 0.00 3.67
2296 3749 4.819105 ACACGGGAATTTCATCTAGTCA 57.181 40.909 0.00 0.00 0.00 3.41
2297 3750 5.048507 GGTACACGGGAATTTCATCTAGTC 58.951 45.833 0.00 0.00 0.00 2.59
2298 3751 4.141779 GGGTACACGGGAATTTCATCTAGT 60.142 45.833 0.00 0.00 0.00 2.57
2299 3752 4.101119 AGGGTACACGGGAATTTCATCTAG 59.899 45.833 0.00 0.00 0.00 2.43
2300 3753 4.035112 AGGGTACACGGGAATTTCATCTA 58.965 43.478 0.00 0.00 0.00 1.98
2301 3754 2.844348 AGGGTACACGGGAATTTCATCT 59.156 45.455 0.00 0.00 0.00 2.90
2302 3755 3.203716 GAGGGTACACGGGAATTTCATC 58.796 50.000 0.00 0.00 0.00 2.92
2303 3756 2.574369 TGAGGGTACACGGGAATTTCAT 59.426 45.455 0.00 0.00 0.00 2.57
2304 3757 1.979308 TGAGGGTACACGGGAATTTCA 59.021 47.619 0.00 0.00 0.00 2.69
2305 3758 2.773993 TGAGGGTACACGGGAATTTC 57.226 50.000 0.00 0.00 0.00 2.17
2306 3759 2.640826 TCTTGAGGGTACACGGGAATTT 59.359 45.455 0.00 0.00 0.00 1.82
2307 3760 2.262637 TCTTGAGGGTACACGGGAATT 58.737 47.619 0.00 0.00 0.00 2.17
2308 3761 1.946984 TCTTGAGGGTACACGGGAAT 58.053 50.000 0.00 0.00 0.00 3.01
2309 3762 1.345415 GTTCTTGAGGGTACACGGGAA 59.655 52.381 0.00 0.00 0.00 3.97
2310 3763 0.971386 GTTCTTGAGGGTACACGGGA 59.029 55.000 0.00 0.00 0.00 5.14
2311 3764 0.682852 TGTTCTTGAGGGTACACGGG 59.317 55.000 0.00 0.00 0.00 5.28
2312 3765 1.343465 AGTGTTCTTGAGGGTACACGG 59.657 52.381 0.00 0.00 44.16 4.94
2313 3766 2.814280 AGTGTTCTTGAGGGTACACG 57.186 50.000 0.00 0.00 44.16 4.49
2314 3767 3.003378 GCAAAGTGTTCTTGAGGGTACAC 59.997 47.826 0.00 0.00 40.81 2.90
2315 3768 3.118038 AGCAAAGTGTTCTTGAGGGTACA 60.118 43.478 0.00 0.00 33.79 2.90
2316 3769 3.477530 AGCAAAGTGTTCTTGAGGGTAC 58.522 45.455 0.00 0.00 33.79 3.34
2317 3770 3.857157 AGCAAAGTGTTCTTGAGGGTA 57.143 42.857 0.00 0.00 33.79 3.69
2318 3771 2.736670 AGCAAAGTGTTCTTGAGGGT 57.263 45.000 0.00 0.00 33.79 4.34
2319 3772 4.761739 TGATAAGCAAAGTGTTCTTGAGGG 59.238 41.667 0.00 0.00 33.79 4.30
2320 3773 5.947228 TGATAAGCAAAGTGTTCTTGAGG 57.053 39.130 0.00 0.00 33.79 3.86
2321 3774 8.939929 TCTTATGATAAGCAAAGTGTTCTTGAG 58.060 33.333 7.33 0.00 33.79 3.02
2322 3775 8.846943 TCTTATGATAAGCAAAGTGTTCTTGA 57.153 30.769 7.33 0.00 33.79 3.02
2323 3776 8.939929 TCTCTTATGATAAGCAAAGTGTTCTTG 58.060 33.333 7.33 0.00 33.79 3.02
2324 3777 8.940952 GTCTCTTATGATAAGCAAAGTGTTCTT 58.059 33.333 7.33 0.00 35.14 2.52
2325 3778 7.550906 GGTCTCTTATGATAAGCAAAGTGTTCT 59.449 37.037 7.33 0.00 0.00 3.01
2326 3779 7.464710 CGGTCTCTTATGATAAGCAAAGTGTTC 60.465 40.741 7.33 0.00 0.00 3.18
2327 3780 6.313905 CGGTCTCTTATGATAAGCAAAGTGTT 59.686 38.462 7.33 0.00 0.00 3.32
2328 3781 5.812642 CGGTCTCTTATGATAAGCAAAGTGT 59.187 40.000 7.33 0.00 0.00 3.55
2329 3782 5.812642 ACGGTCTCTTATGATAAGCAAAGTG 59.187 40.000 7.33 0.00 0.00 3.16
2330 3783 5.978814 ACGGTCTCTTATGATAAGCAAAGT 58.021 37.500 7.33 1.85 0.00 2.66
2331 3784 6.910536 AACGGTCTCTTATGATAAGCAAAG 57.089 37.500 7.33 0.79 0.00 2.77
2332 3785 7.361713 CCAAAACGGTCTCTTATGATAAGCAAA 60.362 37.037 7.33 0.00 0.00 3.68
2333 3786 6.093495 CCAAAACGGTCTCTTATGATAAGCAA 59.907 38.462 7.33 0.00 0.00 3.91
2334 3787 5.584649 CCAAAACGGTCTCTTATGATAAGCA 59.415 40.000 7.33 0.00 0.00 3.91
2335 3788 5.504173 GCCAAAACGGTCTCTTATGATAAGC 60.504 44.000 7.33 0.00 36.97 3.09
2336 3789 6.049263 GCCAAAACGGTCTCTTATGATAAG 57.951 41.667 5.86 5.86 36.97 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.