Multiple sequence alignment - TraesCS1A01G179400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G179400 chr1A 100.000 2639 0 0 1 2639 324489259 324491897 0.000000e+00 4874.0
1 TraesCS1A01G179400 chr1A 82.536 418 66 6 50 465 453089060 453088648 6.940000e-96 361.0
2 TraesCS1A01G179400 chr1D 89.270 699 48 15 1043 1718 252912433 252913127 0.000000e+00 850.0
3 TraesCS1A01G179400 chr1D 90.873 504 31 7 536 1038 252911906 252912395 0.000000e+00 662.0
4 TraesCS1A01G179400 chr1D 86.322 541 63 9 1 538 252906730 252907262 1.760000e-161 579.0
5 TraesCS1A01G179400 chr1D 81.952 543 50 17 2123 2621 252913438 252913976 1.460000e-112 416.0
6 TraesCS1A01G179400 chr1B 89.574 681 51 14 1048 1718 359910192 359909522 0.000000e+00 846.0
7 TraesCS1A01G179400 chr1B 91.707 410 19 7 630 1038 359910631 359910236 2.970000e-154 555.0
8 TraesCS1A01G179400 chr1B 83.026 542 45 15 2123 2621 359909205 359908668 5.180000e-122 448.0
9 TraesCS1A01G179400 chr5D 86.190 420 50 4 55 467 443003119 443002701 5.180000e-122 448.0
10 TraesCS1A01G179400 chr5D 84.096 415 59 7 50 463 392074142 392073734 6.850000e-106 394.0
11 TraesCS1A01G179400 chr7D 84.928 418 60 3 49 465 21095363 21095778 1.130000e-113 420.0
12 TraesCS1A01G179400 chr4B 84.286 420 60 5 50 465 142544350 142544767 3.160000e-109 405.0
13 TraesCS1A01G179400 chr4B 85.302 381 50 4 69 448 484779673 484780048 3.190000e-104 388.0
14 TraesCS1A01G179400 chr4B 84.211 76 12 0 1181 1256 462928062 462928137 1.010000e-09 75.0
15 TraesCS1A01G179400 chr3D 84.211 418 62 4 50 465 398533187 398532772 1.140000e-108 403.0
16 TraesCS1A01G179400 chr6D 83.059 425 63 7 50 467 68072253 68072675 6.900000e-101 377.0
17 TraesCS1A01G179400 chr6B 82.243 107 8 8 1157 1256 107077979 107078081 6.050000e-12 82.4
18 TraesCS1A01G179400 chrUn 81.308 107 9 8 1157 1256 98088443 98088545 2.820000e-10 76.8
19 TraesCS1A01G179400 chrUn 81.731 104 8 9 1160 1256 356572737 356572638 2.820000e-10 76.8
20 TraesCS1A01G179400 chr6A 81.308 107 9 8 1157 1256 53146414 53146516 2.820000e-10 76.8
21 TraesCS1A01G179400 chr3B 81.308 107 9 9 1157 1256 52617608 52617710 2.820000e-10 76.8
22 TraesCS1A01G179400 chr7A 95.349 43 2 0 1214 1256 61453164 61453122 4.710000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G179400 chr1A 324489259 324491897 2638 False 4874.000000 4874 100.000000 1 2639 1 chr1A.!!$F1 2638
1 TraesCS1A01G179400 chr1D 252911906 252913976 2070 False 642.666667 850 87.365000 536 2621 3 chr1D.!!$F2 2085
2 TraesCS1A01G179400 chr1D 252906730 252907262 532 False 579.000000 579 86.322000 1 538 1 chr1D.!!$F1 537
3 TraesCS1A01G179400 chr1B 359908668 359910631 1963 True 616.333333 846 88.102333 630 2621 3 chr1B.!!$R1 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 674 0.319641 GCCCGATATTCACCCTCGTC 60.32 60.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2221 0.038526 GAGAAGTCAGTTTCGGCCGA 60.039 55.0 27.28 27.28 32.33 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.067846 TCTTTGACACCTCCGACGATG 60.068 52.381 0.00 0.00 0.00 3.84
41 42 0.866061 GACGATGACGACGACCATGG 60.866 60.000 11.19 11.19 42.66 3.66
42 43 2.230940 CGATGACGACGACCATGGC 61.231 63.158 13.04 3.65 42.66 4.40
46 47 2.680352 ACGACGACCATGGCTCCT 60.680 61.111 13.04 0.00 0.00 3.69
47 48 2.227089 GACGACGACCATGGCTCCTT 62.227 60.000 13.04 0.00 0.00 3.36
53 71 1.899437 GACCATGGCTCCTTGTCCGA 61.899 60.000 13.04 0.00 0.00 4.55
61 79 1.821061 CTCCTTGTCCGACACCAGCT 61.821 60.000 0.00 0.00 0.00 4.24
62 80 1.669115 CCTTGTCCGACACCAGCTG 60.669 63.158 6.78 6.78 0.00 4.24
63 81 1.069765 CTTGTCCGACACCAGCTGT 59.930 57.895 13.81 0.00 34.96 4.40
64 82 0.946221 CTTGTCCGACACCAGCTGTC 60.946 60.000 13.81 3.56 45.38 3.51
69 87 3.479370 GACACCAGCTGTCGATGC 58.521 61.111 13.81 5.39 40.14 3.91
70 88 2.046892 ACACCAGCTGTCGATGCC 60.047 61.111 13.81 0.00 0.00 4.40
71 89 2.267006 CACCAGCTGTCGATGCCT 59.733 61.111 13.81 0.00 0.00 4.75
72 90 1.257750 ACACCAGCTGTCGATGCCTA 61.258 55.000 13.81 0.00 0.00 3.93
73 91 0.807667 CACCAGCTGTCGATGCCTAC 60.808 60.000 13.81 0.00 0.00 3.18
74 92 1.257750 ACCAGCTGTCGATGCCTACA 61.258 55.000 13.81 0.00 0.00 2.74
75 93 0.529337 CCAGCTGTCGATGCCTACAG 60.529 60.000 13.81 2.92 44.79 2.74
78 96 2.969157 CTGTCGATGCCTACAGCTG 58.031 57.895 13.48 13.48 44.23 4.24
81 99 2.202797 CGATGCCTACAGCTGCGT 60.203 61.111 15.27 0.00 44.23 5.24
88 106 4.771356 TACAGCTGCGTCGGCGAC 62.771 66.667 29.06 29.06 44.10 5.19
129 147 1.550976 GAGGAAGTGGTGAATCTCCGT 59.449 52.381 0.00 0.00 0.00 4.69
131 149 1.630148 GAAGTGGTGAATCTCCGTCG 58.370 55.000 0.00 0.00 0.00 5.12
223 242 5.803020 ACTTTAGCGATCTTTTGGACATC 57.197 39.130 0.00 0.00 0.00 3.06
225 244 5.705441 ACTTTAGCGATCTTTTGGACATCAA 59.295 36.000 0.00 0.00 0.00 2.57
229 248 3.309682 GCGATCTTTTGGACATCAATCGA 59.690 43.478 6.08 0.00 36.70 3.59
238 257 9.229784 CTTTTGGACATCAATCGATAATCTTTG 57.770 33.333 0.00 0.00 34.98 2.77
244 263 7.000472 ACATCAATCGATAATCTTTGGGTGAT 59.000 34.615 0.00 0.00 0.00 3.06
246 265 5.997746 TCAATCGATAATCTTTGGGTGATCC 59.002 40.000 0.00 0.00 0.00 3.36
289 308 7.642669 CCCAGATTATATGTTTGTGTGATGAC 58.357 38.462 0.00 0.00 0.00 3.06
332 351 6.714278 TGTTGCATGCTAGTATGGATATGAT 58.286 36.000 20.33 0.00 0.00 2.45
335 354 5.426185 TGCATGCTAGTATGGATATGATGGA 59.574 40.000 20.33 0.00 0.00 3.41
338 357 4.402474 TGCTAGTATGGATATGATGGACCG 59.598 45.833 0.00 0.00 0.00 4.79
339 358 4.645136 GCTAGTATGGATATGATGGACCGA 59.355 45.833 0.00 0.00 0.00 4.69
374 393 2.083774 GATGTGGCCGACAAGATTTGA 58.916 47.619 11.29 0.00 38.36 2.69
376 395 1.071542 TGTGGCCGACAAGATTTGAGA 59.928 47.619 0.00 0.00 0.00 3.27
382 401 3.070018 CCGACAAGATTTGAGAAGTGCT 58.930 45.455 0.00 0.00 0.00 4.40
439 458 2.340328 GCGTTTGAGGGCCCGAATT 61.340 57.895 18.44 0.00 0.00 2.17
448 467 2.485122 GCCCGAATTTGCAGGTCG 59.515 61.111 8.34 8.34 34.58 4.79
449 468 2.332654 GCCCGAATTTGCAGGTCGT 61.333 57.895 12.77 0.00 32.93 4.34
450 469 1.862602 GCCCGAATTTGCAGGTCGTT 61.863 55.000 12.77 0.00 32.93 3.85
452 471 0.871722 CCGAATTTGCAGGTCGTTGA 59.128 50.000 12.77 0.00 32.93 3.18
472 491 8.414003 TCGTTGATGTAGATGCTCTTATAAACT 58.586 33.333 0.00 0.00 0.00 2.66
485 504 9.716531 TGCTCTTATAAACTCTATTGATGATGG 57.283 33.333 0.00 0.00 0.00 3.51
486 505 9.160496 GCTCTTATAAACTCTATTGATGATGGG 57.840 37.037 0.00 0.00 0.00 4.00
494 513 7.872113 ACTCTATTGATGATGGGTTTTTCTC 57.128 36.000 0.00 0.00 0.00 2.87
519 539 3.829886 TGTGTGCTTCGAATTTGGATC 57.170 42.857 0.00 0.00 0.00 3.36
530 550 9.950680 GCTTCGAATTTGGATCTGAATTATTTA 57.049 29.630 0.00 0.00 0.00 1.40
619 640 8.055279 TCTTTTAAGTTTTATCATGGAGCAGG 57.945 34.615 0.00 0.00 0.00 4.85
625 646 4.502105 TTTATCATGGAGCAGGTAAGCA 57.498 40.909 0.00 0.00 36.85 3.91
634 655 2.802816 GAGCAGGTAAGCAATGGTATCG 59.197 50.000 0.00 0.00 36.85 2.92
653 674 0.319641 GCCCGATATTCACCCTCGTC 60.320 60.000 0.00 0.00 0.00 4.20
667 688 1.407258 CCTCGTCTGTCTCTCCAATCC 59.593 57.143 0.00 0.00 0.00 3.01
672 693 1.079490 TCTGTCTCTCCAATCCCCACT 59.921 52.381 0.00 0.00 0.00 4.00
716 737 4.201891 GCCAGAATGTGCTAGACAAATCAG 60.202 45.833 0.00 0.00 38.36 2.90
819 840 0.321298 AGACGTACGGGCAAAGCATT 60.321 50.000 21.06 0.00 0.00 3.56
860 882 4.227197 ACCTCACCTTATATGTAGCAGCT 58.773 43.478 0.00 0.00 0.00 4.24
867 889 5.478679 ACCTTATATGTAGCAGCTCTGTAGG 59.521 44.000 0.00 0.75 0.00 3.18
987 1009 0.827507 AAAAGGCGCCACAACCTGAT 60.828 50.000 31.54 0.00 36.07 2.90
988 1010 1.244019 AAAGGCGCCACAACCTGATC 61.244 55.000 31.54 0.00 36.07 2.92
989 1011 2.359850 GGCGCCACAACCTGATCA 60.360 61.111 24.80 0.00 0.00 2.92
990 1012 1.971167 GGCGCCACAACCTGATCAA 60.971 57.895 24.80 0.00 0.00 2.57
994 1016 1.338105 CGCCACAACCTGATCAAGAGA 60.338 52.381 0.00 0.00 0.00 3.10
1004 1026 4.834496 ACCTGATCAAGAGAGATCCAGATC 59.166 45.833 0.00 0.00 42.95 2.75
1008 1030 3.574749 TCAAGAGAGATCCAGATCCCAG 58.425 50.000 4.01 0.00 38.58 4.45
1030 1052 2.150611 CGAACTCGTAAACACGTCTGTG 59.849 50.000 0.00 0.00 42.31 3.66
1031 1053 5.437817 CGAACTCGTAAACACGTCTGTGC 62.438 52.174 0.00 0.00 41.23 4.57
1039 1061 3.128259 CACGTCTGTGCATAGTGCT 57.872 52.632 10.52 0.00 45.31 4.40
1040 1062 2.278026 CACGTCTGTGCATAGTGCTA 57.722 50.000 10.52 0.00 45.31 3.49
1041 1063 2.814269 CACGTCTGTGCATAGTGCTAT 58.186 47.619 10.52 0.00 45.31 2.97
1046 1102 4.360563 GTCTGTGCATAGTGCTATTACGT 58.639 43.478 10.52 0.00 45.31 3.57
1053 1109 6.746364 GTGCATAGTGCTATTACGTATACTCC 59.254 42.308 0.00 0.00 45.31 3.85
1074 1130 1.592223 CACTCACCCCCGAGAAGTC 59.408 63.158 0.00 0.00 36.47 3.01
1417 1479 2.205074 ACCGAATCTCATCATGCGTTC 58.795 47.619 0.00 0.00 0.00 3.95
1424 1486 1.031571 TCATCATGCGTTCCCTTGCC 61.032 55.000 0.00 0.00 0.00 4.52
1426 1488 1.033746 ATCATGCGTTCCCTTGCCTG 61.034 55.000 0.00 0.00 0.00 4.85
1437 1505 4.584638 TCCCTTGCCTGTTATTATGTGT 57.415 40.909 0.00 0.00 0.00 3.72
1455 1523 2.353889 GTGTGATCATGCAAGGCTGTAG 59.646 50.000 0.00 0.00 0.00 2.74
1456 1524 2.026915 TGTGATCATGCAAGGCTGTAGT 60.027 45.455 0.00 0.00 0.00 2.73
1457 1525 2.353889 GTGATCATGCAAGGCTGTAGTG 59.646 50.000 0.00 0.00 0.00 2.74
1460 1528 1.073763 TCATGCAAGGCTGTAGTGGTT 59.926 47.619 0.00 0.00 0.00 3.67
1461 1529 1.200716 CATGCAAGGCTGTAGTGGTTG 59.799 52.381 0.00 0.00 0.00 3.77
1462 1530 0.182537 TGCAAGGCTGTAGTGGTTGT 59.817 50.000 0.00 0.00 0.00 3.32
1463 1531 1.318576 GCAAGGCTGTAGTGGTTGTT 58.681 50.000 0.00 0.00 0.00 2.83
1464 1532 2.158740 TGCAAGGCTGTAGTGGTTGTTA 60.159 45.455 0.00 0.00 0.00 2.41
1465 1533 2.882137 GCAAGGCTGTAGTGGTTGTTAA 59.118 45.455 0.00 0.00 0.00 2.01
1466 1534 3.316868 GCAAGGCTGTAGTGGTTGTTAAA 59.683 43.478 0.00 0.00 0.00 1.52
1468 1536 5.508994 GCAAGGCTGTAGTGGTTGTTAAATT 60.509 40.000 0.00 0.00 0.00 1.82
1470 1538 6.724893 AGGCTGTAGTGGTTGTTAAATTTT 57.275 33.333 0.00 0.00 0.00 1.82
1471 1539 7.119709 AGGCTGTAGTGGTTGTTAAATTTTT 57.880 32.000 0.00 0.00 0.00 1.94
1472 1540 7.207383 AGGCTGTAGTGGTTGTTAAATTTTTC 58.793 34.615 0.00 0.00 0.00 2.29
1474 1542 7.381408 GGCTGTAGTGGTTGTTAAATTTTTCTC 59.619 37.037 0.00 0.00 0.00 2.87
1475 1543 7.381408 GCTGTAGTGGTTGTTAAATTTTTCTCC 59.619 37.037 0.00 0.00 0.00 3.71
1513 1581 3.651480 GATGCCAACTCGTGCGTGC 62.651 63.158 0.00 0.00 0.00 5.34
1539 1610 2.424601 GGCGTGTAGTGTAGGATGTACA 59.575 50.000 0.00 0.00 0.00 2.90
1540 1611 3.067742 GGCGTGTAGTGTAGGATGTACAT 59.932 47.826 8.43 8.43 0.00 2.29
1542 1613 5.107133 GCGTGTAGTGTAGGATGTACATTT 58.893 41.667 10.30 4.51 0.00 2.32
1544 1615 6.561614 CGTGTAGTGTAGGATGTACATTTCT 58.438 40.000 10.30 12.85 0.00 2.52
1548 1619 9.431887 TGTAGTGTAGGATGTACATTTCTTTTC 57.568 33.333 10.30 0.00 0.00 2.29
1592 1667 8.023128 ACTGTATATAACGTCGTTTGTGTAGTT 58.977 33.333 16.98 0.00 0.00 2.24
1597 1672 4.291540 ACGTCGTTTGTGTAGTTCTACA 57.708 40.909 8.38 8.38 0.00 2.74
1598 1673 4.863491 ACGTCGTTTGTGTAGTTCTACAT 58.137 39.130 14.44 0.00 32.03 2.29
1609 1686 9.462606 TTGTGTAGTTCTACATATCTCTTGAGA 57.537 33.333 14.44 2.59 32.03 3.27
1635 1712 0.916086 TAATGTTGCCCCCGATCTGT 59.084 50.000 0.00 0.00 0.00 3.41
1654 1731 1.064060 GTTGCAAACTTGAGCTGACGT 59.936 47.619 0.00 0.00 45.32 4.34
1664 1741 2.270923 TGAGCTGACGTATGCATTCAC 58.729 47.619 3.54 0.00 0.00 3.18
1705 1782 0.456142 TCCTTGACAACGATCGAGCG 60.456 55.000 23.12 23.12 37.29 5.03
1706 1783 1.341802 CTTGACAACGATCGAGCGC 59.658 57.895 24.71 7.27 33.86 5.92
1718 1795 2.368655 TCGAGCGCATGTGCATATAT 57.631 45.000 31.29 11.86 42.21 0.86
1720 1797 3.179048 TCGAGCGCATGTGCATATATAC 58.821 45.455 31.29 12.65 42.21 1.47
1721 1798 2.923020 CGAGCGCATGTGCATATATACA 59.077 45.455 31.29 0.00 42.21 2.29
1722 1799 3.553105 CGAGCGCATGTGCATATATACAT 59.447 43.478 31.29 8.77 42.21 2.29
1730 1807 5.743636 TGTGCATATATACATGAGGAGCA 57.256 39.130 0.00 0.00 0.00 4.26
1732 1809 5.482006 GTGCATATATACATGAGGAGCACA 58.518 41.667 17.37 0.00 46.42 4.57
1733 1810 5.349817 GTGCATATATACATGAGGAGCACAC 59.650 44.000 17.37 7.13 46.42 3.82
1734 1811 4.564372 GCATATATACATGAGGAGCACACG 59.436 45.833 0.00 0.00 0.00 4.49
1735 1812 2.509052 TATACATGAGGAGCACACGC 57.491 50.000 0.00 0.00 38.99 5.34
1736 1813 0.536724 ATACATGAGGAGCACACGCA 59.463 50.000 0.00 0.00 42.27 5.24
1737 1814 0.320050 TACATGAGGAGCACACGCAA 59.680 50.000 0.00 0.00 42.27 4.85
1740 1817 0.806868 ATGAGGAGCACACGCAAATG 59.193 50.000 0.00 0.00 42.27 2.32
1741 1818 0.250252 TGAGGAGCACACGCAAATGA 60.250 50.000 0.00 0.00 42.27 2.57
1742 1819 0.445436 GAGGAGCACACGCAAATGAG 59.555 55.000 0.00 0.00 42.27 2.90
1743 1820 0.957395 AGGAGCACACGCAAATGAGG 60.957 55.000 0.00 0.00 42.27 3.86
1744 1821 1.237285 GGAGCACACGCAAATGAGGT 61.237 55.000 0.00 0.00 42.27 3.85
1746 1823 0.593128 AGCACACGCAAATGAGGTTC 59.407 50.000 0.00 0.00 42.27 3.62
1747 1824 0.593128 GCACACGCAAATGAGGTTCT 59.407 50.000 0.00 0.00 38.36 3.01
1748 1825 1.001378 GCACACGCAAATGAGGTTCTT 60.001 47.619 0.00 0.00 38.36 2.52
1749 1826 2.653890 CACACGCAAATGAGGTTCTTG 58.346 47.619 0.00 0.00 0.00 3.02
1750 1827 2.290367 CACACGCAAATGAGGTTCTTGA 59.710 45.455 0.00 0.00 0.00 3.02
1751 1828 3.058016 CACACGCAAATGAGGTTCTTGAT 60.058 43.478 0.00 0.00 0.00 2.57
1753 1830 4.943705 ACACGCAAATGAGGTTCTTGATAT 59.056 37.500 0.00 0.00 0.00 1.63
1754 1831 5.163723 ACACGCAAATGAGGTTCTTGATATG 60.164 40.000 0.00 0.00 0.00 1.78
1755 1832 5.065090 CACGCAAATGAGGTTCTTGATATGA 59.935 40.000 0.00 0.00 0.00 2.15
1756 1833 5.647658 ACGCAAATGAGGTTCTTGATATGAA 59.352 36.000 0.00 0.00 0.00 2.57
1758 1835 6.037500 CGCAAATGAGGTTCTTGATATGAAGA 59.962 38.462 0.00 0.00 0.00 2.87
1759 1836 7.192232 GCAAATGAGGTTCTTGATATGAAGAC 58.808 38.462 3.91 0.85 31.53 3.01
1760 1837 7.148188 GCAAATGAGGTTCTTGATATGAAGACA 60.148 37.037 3.91 0.17 31.53 3.41
1761 1838 8.900781 CAAATGAGGTTCTTGATATGAAGACAT 58.099 33.333 3.91 2.51 40.16 3.06
1765 1842 9.605275 TGAGGTTCTTGATATGAAGACATAAAG 57.395 33.333 3.91 0.00 41.46 1.85
1766 1843 9.823647 GAGGTTCTTGATATGAAGACATAAAGA 57.176 33.333 3.91 0.00 41.46 2.52
1777 1854 8.641498 ATGAAGACATAAAGAAATGAACTGGT 57.359 30.769 0.00 0.00 34.71 4.00
1779 1856 7.174946 TGAAGACATAAAGAAATGAACTGGTCC 59.825 37.037 0.00 0.00 0.00 4.46
1782 1859 5.476945 ACATAAAGAAATGAACTGGTCCCAC 59.523 40.000 0.00 0.00 0.00 4.61
1783 1860 3.593442 AAGAAATGAACTGGTCCCACA 57.407 42.857 0.00 0.00 0.00 4.17
1784 1861 3.814504 AGAAATGAACTGGTCCCACAT 57.185 42.857 0.00 0.00 0.00 3.21
1785 1862 4.927267 AGAAATGAACTGGTCCCACATA 57.073 40.909 0.00 0.00 0.00 2.29
1786 1863 5.456921 AGAAATGAACTGGTCCCACATAT 57.543 39.130 0.00 0.00 0.00 1.78
1787 1864 6.575244 AGAAATGAACTGGTCCCACATATA 57.425 37.500 0.00 0.00 0.00 0.86
1788 1865 6.969043 AGAAATGAACTGGTCCCACATATAA 58.031 36.000 0.00 0.00 0.00 0.98
1789 1866 7.410174 AGAAATGAACTGGTCCCACATATAAA 58.590 34.615 0.00 0.00 0.00 1.40
1790 1867 8.061304 AGAAATGAACTGGTCCCACATATAAAT 58.939 33.333 0.00 0.00 0.00 1.40
1792 1869 7.823745 ATGAACTGGTCCCACATATAAATTC 57.176 36.000 0.00 0.00 0.00 2.17
1793 1870 5.820423 TGAACTGGTCCCACATATAAATTCG 59.180 40.000 0.00 0.00 0.00 3.34
1794 1871 5.623956 ACTGGTCCCACATATAAATTCGA 57.376 39.130 0.00 0.00 0.00 3.71
1795 1872 5.996644 ACTGGTCCCACATATAAATTCGAA 58.003 37.500 0.00 0.00 0.00 3.71
1796 1873 6.419791 ACTGGTCCCACATATAAATTCGAAA 58.580 36.000 0.00 0.00 0.00 3.46
1799 1876 8.299990 TGGTCCCACATATAAATTCGAAAAAT 57.700 30.769 0.00 0.00 0.00 1.82
1812 1889 8.911247 AAATTCGAAAAATTACCAGTGCTATC 57.089 30.769 0.00 0.00 0.00 2.08
1813 1890 6.431198 TTCGAAAAATTACCAGTGCTATCC 57.569 37.500 0.00 0.00 0.00 2.59
1814 1891 4.879545 TCGAAAAATTACCAGTGCTATCCC 59.120 41.667 0.00 0.00 0.00 3.85
1816 1893 5.124776 CGAAAAATTACCAGTGCTATCCCAA 59.875 40.000 0.00 0.00 0.00 4.12
1817 1894 6.530019 AAAAATTACCAGTGCTATCCCAAG 57.470 37.500 0.00 0.00 0.00 3.61
1818 1895 4.862641 AATTACCAGTGCTATCCCAAGT 57.137 40.909 0.00 0.00 0.00 3.16
1820 1897 2.789409 ACCAGTGCTATCCCAAGTTC 57.211 50.000 0.00 0.00 0.00 3.01
1821 1898 2.269940 ACCAGTGCTATCCCAAGTTCT 58.730 47.619 0.00 0.00 0.00 3.01
1822 1899 2.237392 ACCAGTGCTATCCCAAGTTCTC 59.763 50.000 0.00 0.00 0.00 2.87
1824 1901 3.307691 CCAGTGCTATCCCAAGTTCTCAA 60.308 47.826 0.00 0.00 0.00 3.02
1825 1902 3.686726 CAGTGCTATCCCAAGTTCTCAAC 59.313 47.826 0.00 0.00 0.00 3.18
1827 1904 3.935828 GTGCTATCCCAAGTTCTCAACTC 59.064 47.826 0.00 0.00 41.91 3.01
1830 1907 4.384647 GCTATCCCAAGTTCTCAACTCCAT 60.385 45.833 0.00 0.00 41.91 3.41
1831 1908 4.664688 ATCCCAAGTTCTCAACTCCATT 57.335 40.909 0.00 0.00 41.91 3.16
1832 1909 5.779241 ATCCCAAGTTCTCAACTCCATTA 57.221 39.130 0.00 0.00 41.91 1.90
1833 1910 5.576563 TCCCAAGTTCTCAACTCCATTAA 57.423 39.130 0.00 0.00 41.91 1.40
1835 1980 6.180472 TCCCAAGTTCTCAACTCCATTAATC 58.820 40.000 0.00 0.00 41.91 1.75
1837 1982 6.660949 CCCAAGTTCTCAACTCCATTAATCTT 59.339 38.462 0.00 0.00 41.91 2.40
1843 1988 8.454894 GTTCTCAACTCCATTAATCTTTCCTTC 58.545 37.037 0.00 0.00 0.00 3.46
1848 1993 2.290641 CCATTAATCTTTCCTTCCCGCG 59.709 50.000 0.00 0.00 0.00 6.46
1851 2002 2.194201 AATCTTTCCTTCCCGCGAAA 57.806 45.000 8.23 0.00 0.00 3.46
1853 2004 1.970092 TCTTTCCTTCCCGCGAAAAA 58.030 45.000 8.23 0.00 0.00 1.94
1878 2029 9.860898 AAATAACTCCATTAATCTTGCTTCAAC 57.139 29.630 0.00 0.00 0.00 3.18
1879 2030 8.814038 ATAACTCCATTAATCTTGCTTCAACT 57.186 30.769 0.00 0.00 0.00 3.16
1880 2031 6.749923 ACTCCATTAATCTTGCTTCAACTC 57.250 37.500 0.00 0.00 0.00 3.01
1881 2032 5.649831 ACTCCATTAATCTTGCTTCAACTCC 59.350 40.000 0.00 0.00 0.00 3.85
1882 2033 4.635765 TCCATTAATCTTGCTTCAACTCCG 59.364 41.667 0.00 0.00 0.00 4.63
1883 2034 4.396166 CCATTAATCTTGCTTCAACTCCGT 59.604 41.667 0.00 0.00 0.00 4.69
1884 2035 5.584649 CCATTAATCTTGCTTCAACTCCGTA 59.415 40.000 0.00 0.00 0.00 4.02
1885 2036 6.093495 CCATTAATCTTGCTTCAACTCCGTAA 59.907 38.462 0.00 0.00 0.00 3.18
1886 2037 6.476243 TTAATCTTGCTTCAACTCCGTAAC 57.524 37.500 0.00 0.00 0.00 2.50
1888 2039 3.799366 TCTTGCTTCAACTCCGTAACAA 58.201 40.909 0.00 0.00 0.00 2.83
1889 2040 4.193090 TCTTGCTTCAACTCCGTAACAAA 58.807 39.130 0.00 0.00 0.00 2.83
1890 2041 4.272504 TCTTGCTTCAACTCCGTAACAAAG 59.727 41.667 0.00 0.00 0.00 2.77
1891 2042 2.289547 TGCTTCAACTCCGTAACAAAGC 59.710 45.455 0.00 0.00 38.43 3.51
1892 2043 2.289547 GCTTCAACTCCGTAACAAAGCA 59.710 45.455 0.00 0.00 37.99 3.91
1893 2044 3.058224 GCTTCAACTCCGTAACAAAGCAT 60.058 43.478 0.00 0.00 37.99 3.79
1895 2046 5.334569 GCTTCAACTCCGTAACAAAGCATAA 60.335 40.000 0.00 0.00 37.99 1.90
1896 2047 6.621316 TTCAACTCCGTAACAAAGCATAAA 57.379 33.333 0.00 0.00 0.00 1.40
1897 2048 6.236017 TCAACTCCGTAACAAAGCATAAAG 57.764 37.500 0.00 0.00 0.00 1.85
1898 2049 4.680171 ACTCCGTAACAAAGCATAAAGC 57.320 40.909 0.00 0.00 46.19 3.51
1913 2064 5.931532 GCATAAAGCATATGCATTACGAGT 58.068 37.500 28.62 10.11 46.89 4.18
1914 2065 7.060600 GCATAAAGCATATGCATTACGAGTA 57.939 36.000 28.62 8.13 46.89 2.59
1916 2067 8.015087 GCATAAAGCATATGCATTACGAGTAAA 58.985 33.333 28.62 6.71 46.89 2.01
1917 2068 9.877137 CATAAAGCATATGCATTACGAGTAAAA 57.123 29.630 28.62 6.01 45.16 1.52
1920 2071 9.450807 AAAGCATATGCATTACGAGTAAAATTC 57.549 29.630 28.62 0.00 45.16 2.17
1921 2072 7.584987 AGCATATGCATTACGAGTAAAATTCC 58.415 34.615 28.62 0.00 45.16 3.01
1922 2073 7.445402 AGCATATGCATTACGAGTAAAATTCCT 59.555 33.333 28.62 0.00 45.16 3.36
1923 2074 8.076178 GCATATGCATTACGAGTAAAATTCCTT 58.924 33.333 22.84 0.00 41.59 3.36
1924 2075 9.385902 CATATGCATTACGAGTAAAATTCCTTG 57.614 33.333 3.54 0.00 0.00 3.61
1925 2076 7.624360 ATGCATTACGAGTAAAATTCCTTGA 57.376 32.000 0.00 0.00 0.00 3.02
1927 2078 6.428465 TGCATTACGAGTAAAATTCCTTGACA 59.572 34.615 0.00 0.00 0.00 3.58
1929 2080 7.481798 GCATTACGAGTAAAATTCCTTGACAAG 59.518 37.037 8.31 8.31 0.00 3.16
1930 2081 5.358298 ACGAGTAAAATTCCTTGACAAGC 57.642 39.130 9.85 0.00 0.00 4.01
1932 2083 6.228258 ACGAGTAAAATTCCTTGACAAGCTA 58.772 36.000 9.85 0.00 0.00 3.32
1933 2084 6.879458 ACGAGTAAAATTCCTTGACAAGCTAT 59.121 34.615 9.85 2.43 0.00 2.97
1941 2092 9.643693 AAATTCCTTGACAAGCTATAATTGTTG 57.356 29.630 9.85 0.00 40.86 3.33
1942 2093 6.757897 TCCTTGACAAGCTATAATTGTTGG 57.242 37.500 9.85 7.58 40.86 3.77
1943 2094 5.125417 TCCTTGACAAGCTATAATTGTTGGC 59.875 40.000 9.85 0.00 40.86 4.52
1944 2095 4.614555 TGACAAGCTATAATTGTTGGCG 57.385 40.909 4.87 0.00 40.86 5.69
1945 2096 3.376859 TGACAAGCTATAATTGTTGGCGG 59.623 43.478 4.87 0.00 40.86 6.13
1947 2098 2.051334 AGCTATAATTGTTGGCGGCA 57.949 45.000 7.97 7.97 0.00 5.69
1948 2099 1.676006 AGCTATAATTGTTGGCGGCAC 59.324 47.619 12.92 7.95 0.00 5.01
1949 2100 1.403679 GCTATAATTGTTGGCGGCACA 59.596 47.619 12.92 10.80 0.00 4.57
1950 2101 2.794631 GCTATAATTGTTGGCGGCACAC 60.795 50.000 12.92 13.87 0.00 3.82
1951 2102 0.530288 ATAATTGTTGGCGGCACACC 59.470 50.000 12.92 3.00 0.00 4.16
1963 2114 4.312231 CACACCGCGTGGCAACTG 62.312 66.667 16.69 8.47 42.34 3.16
1968 2119 3.049674 CGCGTGGCAACTGGTCAT 61.050 61.111 0.00 0.00 30.93 3.06
1969 2120 2.870372 GCGTGGCAACTGGTCATC 59.130 61.111 0.00 0.00 30.93 2.92
1970 2121 1.965930 GCGTGGCAACTGGTCATCA 60.966 57.895 0.00 0.00 30.93 3.07
1971 2122 1.514678 GCGTGGCAACTGGTCATCAA 61.515 55.000 0.00 0.00 30.93 2.57
1972 2123 1.167851 CGTGGCAACTGGTCATCAAT 58.832 50.000 0.00 0.00 30.93 2.57
1973 2124 1.131126 CGTGGCAACTGGTCATCAATC 59.869 52.381 0.00 0.00 30.93 2.67
1974 2125 2.440409 GTGGCAACTGGTCATCAATCT 58.560 47.619 0.00 0.00 30.93 2.40
1975 2126 2.421424 GTGGCAACTGGTCATCAATCTC 59.579 50.000 0.00 0.00 30.93 2.75
1976 2127 2.019984 GGCAACTGGTCATCAATCTCC 58.980 52.381 0.00 0.00 0.00 3.71
1977 2128 2.019984 GCAACTGGTCATCAATCTCCC 58.980 52.381 0.00 0.00 0.00 4.30
1978 2129 2.283298 CAACTGGTCATCAATCTCCCG 58.717 52.381 0.00 0.00 0.00 5.14
1979 2130 1.866015 ACTGGTCATCAATCTCCCGA 58.134 50.000 0.00 0.00 0.00 5.14
1980 2131 1.482593 ACTGGTCATCAATCTCCCGAC 59.517 52.381 0.00 0.00 0.00 4.79
1981 2132 0.830648 TGGTCATCAATCTCCCGACC 59.169 55.000 0.00 0.00 45.24 4.79
1982 2133 0.830648 GGTCATCAATCTCCCGACCA 59.169 55.000 0.00 0.00 44.55 4.02
1983 2134 1.209504 GGTCATCAATCTCCCGACCAA 59.790 52.381 0.00 0.00 44.55 3.67
1984 2135 2.355716 GGTCATCAATCTCCCGACCAAA 60.356 50.000 0.00 0.00 44.55 3.28
1985 2136 3.343617 GTCATCAATCTCCCGACCAAAA 58.656 45.455 0.00 0.00 0.00 2.44
1986 2137 3.127030 GTCATCAATCTCCCGACCAAAAC 59.873 47.826 0.00 0.00 0.00 2.43
1987 2138 3.009033 TCATCAATCTCCCGACCAAAACT 59.991 43.478 0.00 0.00 0.00 2.66
1988 2139 4.224147 TCATCAATCTCCCGACCAAAACTA 59.776 41.667 0.00 0.00 0.00 2.24
1989 2140 4.627284 TCAATCTCCCGACCAAAACTAA 57.373 40.909 0.00 0.00 0.00 2.24
1990 2141 5.174037 TCAATCTCCCGACCAAAACTAAT 57.826 39.130 0.00 0.00 0.00 1.73
1991 2142 6.302535 TCAATCTCCCGACCAAAACTAATA 57.697 37.500 0.00 0.00 0.00 0.98
1992 2143 6.713276 TCAATCTCCCGACCAAAACTAATAA 58.287 36.000 0.00 0.00 0.00 1.40
1993 2144 7.343357 TCAATCTCCCGACCAAAACTAATAAT 58.657 34.615 0.00 0.00 0.00 1.28
1994 2145 7.282224 TCAATCTCCCGACCAAAACTAATAATG 59.718 37.037 0.00 0.00 0.00 1.90
1995 2146 6.057321 TCTCCCGACCAAAACTAATAATGT 57.943 37.500 0.00 0.00 0.00 2.71
1996 2147 6.478129 TCTCCCGACCAAAACTAATAATGTT 58.522 36.000 0.00 0.00 0.00 2.71
1997 2148 6.373216 TCTCCCGACCAAAACTAATAATGTTG 59.627 38.462 0.00 0.00 0.00 3.33
1998 2149 5.416326 TCCCGACCAAAACTAATAATGTTGG 59.584 40.000 0.00 0.00 43.60 3.77
1999 2150 5.099575 CCGACCAAAACTAATAATGTTGGC 58.900 41.667 0.72 0.00 42.06 4.52
2000 2151 5.336055 CCGACCAAAACTAATAATGTTGGCA 60.336 40.000 0.72 0.00 42.06 4.92
2001 2152 6.153067 CGACCAAAACTAATAATGTTGGCAA 58.847 36.000 0.00 0.00 42.06 4.52
2002 2153 6.088883 CGACCAAAACTAATAATGTTGGCAAC 59.911 38.462 23.12 23.12 42.06 4.17
2014 2165 2.356194 GGCAACAAAGGCGGCAAG 60.356 61.111 13.08 2.36 0.00 4.01
2015 2166 2.356194 GCAACAAAGGCGGCAAGG 60.356 61.111 13.08 1.49 0.00 3.61
2016 2167 2.855514 GCAACAAAGGCGGCAAGGA 61.856 57.895 13.08 0.00 0.00 3.36
2017 2168 1.739049 CAACAAAGGCGGCAAGGAA 59.261 52.632 13.08 0.00 0.00 3.36
2018 2169 0.103937 CAACAAAGGCGGCAAGGAAA 59.896 50.000 13.08 0.00 0.00 3.13
2019 2170 0.827368 AACAAAGGCGGCAAGGAAAA 59.173 45.000 13.08 0.00 0.00 2.29
2020 2171 0.827368 ACAAAGGCGGCAAGGAAAAA 59.173 45.000 13.08 0.00 0.00 1.94
2021 2172 1.217001 CAAAGGCGGCAAGGAAAAAC 58.783 50.000 13.08 0.00 0.00 2.43
2022 2173 0.105964 AAAGGCGGCAAGGAAAAACC 59.894 50.000 13.08 0.00 39.35 3.27
2023 2174 1.045911 AAGGCGGCAAGGAAAAACCA 61.046 50.000 13.08 0.00 42.04 3.67
2024 2175 0.831711 AGGCGGCAAGGAAAAACCAT 60.832 50.000 13.08 0.00 42.04 3.55
2025 2176 0.670239 GGCGGCAAGGAAAAACCATG 60.670 55.000 3.07 0.00 42.04 3.66
2026 2177 0.316841 GCGGCAAGGAAAAACCATGA 59.683 50.000 0.00 0.00 39.44 3.07
2027 2178 1.270041 GCGGCAAGGAAAAACCATGAA 60.270 47.619 0.00 0.00 39.44 2.57
2028 2179 2.403259 CGGCAAGGAAAAACCATGAAC 58.597 47.619 0.00 0.00 39.44 3.18
2029 2180 2.766313 GGCAAGGAAAAACCATGAACC 58.234 47.619 0.00 0.00 39.44 3.62
2030 2181 2.103941 GGCAAGGAAAAACCATGAACCA 59.896 45.455 0.00 0.00 39.44 3.67
2031 2182 3.392882 GCAAGGAAAAACCATGAACCAG 58.607 45.455 0.00 0.00 39.44 4.00
2032 2183 3.181466 GCAAGGAAAAACCATGAACCAGT 60.181 43.478 0.00 0.00 39.44 4.00
2033 2184 4.620982 CAAGGAAAAACCATGAACCAGTC 58.379 43.478 0.00 0.00 39.44 3.51
2034 2185 3.909732 AGGAAAAACCATGAACCAGTCA 58.090 40.909 0.00 0.00 42.04 3.41
2035 2186 4.285863 AGGAAAAACCATGAACCAGTCAA 58.714 39.130 0.00 0.00 42.04 3.18
2036 2187 4.714308 AGGAAAAACCATGAACCAGTCAAA 59.286 37.500 0.00 0.00 42.04 2.69
2037 2188 5.188751 AGGAAAAACCATGAACCAGTCAAAA 59.811 36.000 0.00 0.00 42.04 2.44
2038 2189 5.877564 GGAAAAACCATGAACCAGTCAAAAA 59.122 36.000 0.00 0.00 40.50 1.94
2039 2190 6.183360 GGAAAAACCATGAACCAGTCAAAAAC 60.183 38.462 0.00 0.00 40.50 2.43
2040 2191 5.413309 AAACCATGAACCAGTCAAAAACA 57.587 34.783 0.00 0.00 40.50 2.83
2041 2192 4.385358 ACCATGAACCAGTCAAAAACAC 57.615 40.909 0.00 0.00 40.50 3.32
2042 2193 3.132111 ACCATGAACCAGTCAAAAACACC 59.868 43.478 0.00 0.00 40.50 4.16
2043 2194 3.371168 CATGAACCAGTCAAAAACACCG 58.629 45.455 0.00 0.00 40.50 4.94
2044 2195 2.712709 TGAACCAGTCAAAAACACCGA 58.287 42.857 0.00 0.00 31.51 4.69
2045 2196 3.082548 TGAACCAGTCAAAAACACCGAA 58.917 40.909 0.00 0.00 31.51 4.30
2046 2197 3.506455 TGAACCAGTCAAAAACACCGAAA 59.494 39.130 0.00 0.00 31.51 3.46
2047 2198 4.022242 TGAACCAGTCAAAAACACCGAAAA 60.022 37.500 0.00 0.00 31.51 2.29
2048 2199 3.840468 ACCAGTCAAAAACACCGAAAAC 58.160 40.909 0.00 0.00 0.00 2.43
2049 2200 3.256136 ACCAGTCAAAAACACCGAAAACA 59.744 39.130 0.00 0.00 0.00 2.83
2050 2201 4.081917 ACCAGTCAAAAACACCGAAAACAT 60.082 37.500 0.00 0.00 0.00 2.71
2051 2202 4.502645 CCAGTCAAAAACACCGAAAACATC 59.497 41.667 0.00 0.00 0.00 3.06
2052 2203 4.502645 CAGTCAAAAACACCGAAAACATCC 59.497 41.667 0.00 0.00 0.00 3.51
2053 2204 3.484285 GTCAAAAACACCGAAAACATCCG 59.516 43.478 0.00 0.00 0.00 4.18
2054 2205 3.128938 TCAAAAACACCGAAAACATCCGT 59.871 39.130 0.00 0.00 0.00 4.69
2055 2206 3.786516 AAAACACCGAAAACATCCGTT 57.213 38.095 0.00 0.00 36.73 4.44
2057 2208 3.343380 AACACCGAAAACATCCGTTTC 57.657 42.857 0.00 0.00 44.65 2.78
2058 2209 2.290464 ACACCGAAAACATCCGTTTCA 58.710 42.857 0.00 0.00 44.65 2.69
2059 2210 2.032426 ACACCGAAAACATCCGTTTCAC 59.968 45.455 0.00 0.00 44.65 3.18
2060 2211 1.605232 ACCGAAAACATCCGTTTCACC 59.395 47.619 0.00 0.00 44.65 4.02
2061 2212 1.877443 CCGAAAACATCCGTTTCACCT 59.123 47.619 0.00 0.00 44.65 4.00
2062 2213 2.095919 CCGAAAACATCCGTTTCACCTC 60.096 50.000 0.00 0.00 44.65 3.85
2063 2214 2.411031 CGAAAACATCCGTTTCACCTCG 60.411 50.000 0.00 0.00 44.65 4.63
2064 2215 1.519408 AAACATCCGTTTCACCTCGG 58.481 50.000 0.00 0.00 41.60 4.63
2072 2223 2.834689 CGTTTCACCTCGGAAATTTCG 58.165 47.619 11.95 7.72 38.86 3.46
2073 2224 2.412325 CGTTTCACCTCGGAAATTTCGG 60.412 50.000 17.23 17.23 38.86 4.30
2074 2225 1.161843 TTCACCTCGGAAATTTCGGC 58.838 50.000 18.23 3.08 0.00 5.54
2075 2226 0.675522 TCACCTCGGAAATTTCGGCC 60.676 55.000 18.23 0.00 0.00 6.13
2076 2227 1.743995 ACCTCGGAAATTTCGGCCG 60.744 57.895 22.12 22.12 46.08 6.13
2082 2233 1.977188 GGAAATTTCGGCCGAAACTG 58.023 50.000 45.73 11.33 45.34 3.16
2083 2234 1.538075 GGAAATTTCGGCCGAAACTGA 59.462 47.619 45.73 30.26 45.34 3.41
2084 2235 2.581637 GAAATTTCGGCCGAAACTGAC 58.418 47.619 45.73 32.74 45.34 3.51
2085 2236 1.892209 AATTTCGGCCGAAACTGACT 58.108 45.000 45.73 31.19 45.34 3.41
2086 2237 1.892209 ATTTCGGCCGAAACTGACTT 58.108 45.000 45.73 30.52 45.34 3.01
2087 2238 1.223187 TTTCGGCCGAAACTGACTTC 58.777 50.000 41.63 0.00 38.95 3.01
2088 2239 0.391597 TTCGGCCGAAACTGACTTCT 59.608 50.000 37.13 0.00 0.00 2.85
2089 2240 0.038526 TCGGCCGAAACTGACTTCTC 60.039 55.000 28.99 0.00 0.00 2.87
2090 2241 1.344942 CGGCCGAAACTGACTTCTCG 61.345 60.000 24.07 0.00 0.00 4.04
2091 2242 0.319641 GGCCGAAACTGACTTCTCGT 60.320 55.000 0.00 0.00 0.00 4.18
2092 2243 1.068055 GGCCGAAACTGACTTCTCGTA 60.068 52.381 0.00 0.00 0.00 3.43
2093 2244 2.608752 GGCCGAAACTGACTTCTCGTAA 60.609 50.000 0.00 0.00 0.00 3.18
2094 2245 2.662156 GCCGAAACTGACTTCTCGTAAG 59.338 50.000 0.00 0.00 0.00 2.34
2095 2246 3.243336 CCGAAACTGACTTCTCGTAAGG 58.757 50.000 5.50 0.00 38.47 2.69
2096 2247 3.057736 CCGAAACTGACTTCTCGTAAGGA 60.058 47.826 5.50 0.00 38.47 3.36
2097 2248 4.380655 CCGAAACTGACTTCTCGTAAGGAT 60.381 45.833 5.50 0.00 38.47 3.24
2098 2249 4.559251 CGAAACTGACTTCTCGTAAGGATG 59.441 45.833 5.50 0.00 38.47 3.51
2099 2250 5.619309 CGAAACTGACTTCTCGTAAGGATGA 60.619 44.000 5.50 0.00 38.47 2.92
2100 2251 5.923733 AACTGACTTCTCGTAAGGATGAT 57.076 39.130 5.50 0.00 38.47 2.45
2101 2252 5.255710 ACTGACTTCTCGTAAGGATGATG 57.744 43.478 5.50 0.00 38.47 3.07
2102 2253 4.950475 ACTGACTTCTCGTAAGGATGATGA 59.050 41.667 5.50 0.00 38.47 2.92
2103 2254 5.419155 ACTGACTTCTCGTAAGGATGATGAA 59.581 40.000 5.50 0.00 38.47 2.57
2104 2255 6.071334 ACTGACTTCTCGTAAGGATGATGAAA 60.071 38.462 5.50 0.00 38.47 2.69
2105 2256 6.100004 TGACTTCTCGTAAGGATGATGAAAC 58.900 40.000 5.50 0.00 38.47 2.78
2106 2257 6.071334 TGACTTCTCGTAAGGATGATGAAACT 60.071 38.462 5.50 0.00 38.47 2.66
2107 2258 6.702329 ACTTCTCGTAAGGATGATGAAACTT 58.298 36.000 5.50 0.00 38.47 2.66
2108 2259 6.591834 ACTTCTCGTAAGGATGATGAAACTTG 59.408 38.462 5.50 0.00 38.47 3.16
2109 2260 5.419542 TCTCGTAAGGATGATGAAACTTGG 58.580 41.667 0.00 0.00 38.47 3.61
2110 2261 5.186992 TCTCGTAAGGATGATGAAACTTGGA 59.813 40.000 0.00 0.00 38.47 3.53
2111 2262 5.800296 TCGTAAGGATGATGAAACTTGGAA 58.200 37.500 0.00 0.00 38.47 3.53
2112 2263 5.874810 TCGTAAGGATGATGAAACTTGGAAG 59.125 40.000 0.00 0.00 38.47 3.46
2113 2264 5.643777 CGTAAGGATGATGAAACTTGGAAGT 59.356 40.000 0.00 0.00 42.04 3.01
2114 2265 6.183360 CGTAAGGATGATGAAACTTGGAAGTC 60.183 42.308 0.00 0.00 38.57 3.01
2115 2266 5.511386 AGGATGATGAAACTTGGAAGTCT 57.489 39.130 0.00 0.00 38.57 3.24
2116 2267 5.251764 AGGATGATGAAACTTGGAAGTCTG 58.748 41.667 0.00 0.00 38.57 3.51
2117 2268 5.013495 AGGATGATGAAACTTGGAAGTCTGA 59.987 40.000 0.00 0.00 38.57 3.27
2118 2269 5.707298 GGATGATGAAACTTGGAAGTCTGAA 59.293 40.000 0.00 0.00 38.57 3.02
2119 2270 6.348868 GGATGATGAAACTTGGAAGTCTGAAC 60.349 42.308 0.00 0.00 38.57 3.18
2120 2271 5.436175 TGATGAAACTTGGAAGTCTGAACA 58.564 37.500 0.00 0.00 38.57 3.18
2121 2272 5.885352 TGATGAAACTTGGAAGTCTGAACAA 59.115 36.000 0.00 0.00 38.57 2.83
2147 2299 8.634335 TTCAATCAATTTGAATCACCTAGACA 57.366 30.769 2.68 0.00 46.80 3.41
2161 2313 5.415077 TCACCTAGACAGCACTACTAGAAAC 59.585 44.000 0.00 0.00 36.65 2.78
2162 2314 5.183331 CACCTAGACAGCACTACTAGAAACA 59.817 44.000 0.00 0.00 36.65 2.83
2174 2327 4.380841 ACTAGAAACAAGACGTGTGACA 57.619 40.909 0.00 0.00 40.60 3.58
2211 2364 1.199789 CGCACCAGCTGCTCAATTAAA 59.800 47.619 8.66 0.00 44.64 1.52
2212 2365 2.351641 CGCACCAGCTGCTCAATTAAAA 60.352 45.455 8.66 0.00 44.64 1.52
2239 2392 8.493787 AGAAATATATAGGAAACTTCGGACCT 57.506 34.615 0.00 0.00 43.67 3.85
2240 2393 8.586744 AGAAATATATAGGAAACTTCGGACCTC 58.413 37.037 0.00 0.00 43.67 3.85
2241 2394 4.850347 ATATAGGAAACTTCGGACCTCG 57.150 45.455 0.00 0.00 43.67 4.63
2242 2395 1.180029 TAGGAAACTTCGGACCTCGG 58.820 55.000 0.00 0.00 43.67 4.63
2244 2397 1.292541 GAAACTTCGGACCTCGGCT 59.707 57.895 0.00 0.00 39.77 5.52
2247 2400 1.192428 AACTTCGGACCTCGGCTATT 58.808 50.000 0.00 0.00 39.77 1.73
2248 2401 1.192428 ACTTCGGACCTCGGCTATTT 58.808 50.000 0.00 0.00 39.77 1.40
2249 2402 1.134788 ACTTCGGACCTCGGCTATTTG 60.135 52.381 0.00 0.00 39.77 2.32
2268 2421 2.016318 TGACAGCACAAAGTTGACTGG 58.984 47.619 17.13 5.78 38.92 4.00
2270 2423 2.423538 GACAGCACAAAGTTGACTGGTT 59.576 45.455 17.13 4.02 38.92 3.67
2287 2440 7.222872 TGACTGGTTTAATGCAATTGGAAATT 58.777 30.769 2.94 0.00 36.99 1.82
2313 2466 0.744771 GCAAATCAGGGACCTCGGAC 60.745 60.000 0.00 0.00 0.00 4.79
2323 2476 1.002087 GGACCTCGGACATTTGACAGT 59.998 52.381 0.00 0.00 0.00 3.55
2328 2481 3.525537 CTCGGACATTTGACAGTAGCAT 58.474 45.455 0.00 0.00 0.00 3.79
2334 2487 3.129813 ACATTTGACAGTAGCATGCATGG 59.870 43.478 27.34 13.04 0.00 3.66
2358 2537 6.071165 GGACATGGAACTTTTCATCCTGAAAT 60.071 38.462 0.00 0.00 44.75 2.17
2481 2661 6.875726 CAGACAAGAGGTACAGAAATTGATGA 59.124 38.462 0.00 0.00 0.00 2.92
2579 2771 3.746045 AGCAGAAAAACGTCCTGTCTA 57.254 42.857 0.00 0.00 0.00 2.59
2588 2783 1.757118 ACGTCCTGTCTACATCCATGG 59.243 52.381 4.97 4.97 0.00 3.66
2591 2786 3.491619 CGTCCTGTCTACATCCATGGAAG 60.492 52.174 20.67 17.81 0.00 3.46
2596 2791 3.843619 TGTCTACATCCATGGAAGTTGGA 59.156 43.478 26.40 20.48 46.86 3.53
2627 2822 8.830915 TCAATCAGTAAATCTTCTAGAGGACT 57.169 34.615 6.72 0.00 0.00 3.85
2628 2823 9.922477 TCAATCAGTAAATCTTCTAGAGGACTA 57.078 33.333 6.72 0.00 0.00 2.59
2631 2826 9.702253 ATCAGTAAATCTTCTAGAGGACTAACA 57.298 33.333 6.72 0.00 0.00 2.41
2632 2827 9.529823 TCAGTAAATCTTCTAGAGGACTAACAA 57.470 33.333 6.72 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.880894 GTCATCGTCGGAGGTGTCA 59.119 57.895 0.00 0.00 0.00 3.58
28 29 2.202756 GGAGCCATGGTCGTCGTC 60.203 66.667 14.67 1.04 0.00 4.20
36 37 1.450312 GTCGGACAAGGAGCCATGG 60.450 63.158 7.63 7.63 0.00 3.66
38 39 1.296715 GTGTCGGACAAGGAGCCAT 59.703 57.895 13.23 0.00 0.00 4.40
39 40 2.741092 GTGTCGGACAAGGAGCCA 59.259 61.111 13.23 0.00 0.00 4.75
41 42 1.374758 CTGGTGTCGGACAAGGAGC 60.375 63.158 13.23 0.00 0.00 4.70
42 43 1.374758 GCTGGTGTCGGACAAGGAG 60.375 63.158 13.23 9.77 0.00 3.69
46 47 1.069090 GACAGCTGGTGTCGGACAA 59.931 57.895 22.33 0.00 46.22 3.18
47 48 2.734591 GACAGCTGGTGTCGGACA 59.265 61.111 22.33 6.76 46.22 4.02
53 71 1.257750 TAGGCATCGACAGCTGGTGT 61.258 55.000 19.93 12.95 44.49 4.16
61 79 1.153568 GCAGCTGTAGGCATCGACA 60.154 57.895 16.64 0.00 44.79 4.35
62 80 2.233654 CGCAGCTGTAGGCATCGAC 61.234 63.158 16.64 0.00 44.79 4.20
63 81 2.104928 CGCAGCTGTAGGCATCGA 59.895 61.111 16.64 0.00 44.79 3.59
64 82 2.202797 ACGCAGCTGTAGGCATCG 60.203 61.111 16.64 10.74 44.79 3.84
65 83 2.233654 CGACGCAGCTGTAGGCATC 61.234 63.158 16.64 0.00 44.79 3.91
66 84 2.202797 CGACGCAGCTGTAGGCAT 60.203 61.111 16.64 0.00 44.79 4.40
67 85 4.435436 CCGACGCAGCTGTAGGCA 62.435 66.667 16.64 0.00 44.79 4.75
70 88 4.476410 TCGCCGACGCAGCTGTAG 62.476 66.667 16.64 12.47 39.84 2.74
71 89 4.771356 GTCGCCGACGCAGCTGTA 62.771 66.667 16.64 0.00 39.84 2.74
101 119 2.266055 CCACTTCCTCACCGGCTC 59.734 66.667 0.00 0.00 0.00 4.70
102 120 2.526873 ACCACTTCCTCACCGGCT 60.527 61.111 0.00 0.00 0.00 5.52
106 124 2.355209 GGAGATTCACCACTTCCTCACC 60.355 54.545 0.00 0.00 0.00 4.02
108 126 1.550524 CGGAGATTCACCACTTCCTCA 59.449 52.381 0.97 0.00 0.00 3.86
112 130 1.067776 ACGACGGAGATTCACCACTTC 60.068 52.381 0.00 0.00 0.00 3.01
129 147 5.601662 ACTTGAAATTGAAGACAGAGACGA 58.398 37.500 0.00 0.00 0.00 4.20
131 149 9.657121 CTAAAACTTGAAATTGAAGACAGAGAC 57.343 33.333 0.00 0.00 0.00 3.36
223 242 5.106948 CGGATCACCCAAAGATTATCGATTG 60.107 44.000 1.71 0.00 34.14 2.67
225 244 4.283467 TCGGATCACCCAAAGATTATCGAT 59.717 41.667 2.16 2.16 34.14 3.59
229 248 5.532406 CACATTCGGATCACCCAAAGATTAT 59.468 40.000 0.00 0.00 34.14 1.28
238 257 1.392589 AATGCACATTCGGATCACCC 58.607 50.000 0.00 0.00 0.00 4.61
265 284 7.500227 AGGTCATCACACAAACATATAATCTGG 59.500 37.037 0.00 0.00 0.00 3.86
267 286 9.547753 GTAGGTCATCACACAAACATATAATCT 57.452 33.333 0.00 0.00 0.00 2.40
272 291 5.730550 ACGTAGGTCATCACACAAACATAT 58.269 37.500 0.00 0.00 0.00 1.78
276 295 3.558418 ACAACGTAGGTCATCACACAAAC 59.442 43.478 0.00 0.00 0.00 2.93
289 308 7.523219 TGCAACATAGATAAAAACAACGTAGG 58.477 34.615 0.00 0.00 0.00 3.18
332 351 3.254903 CCGTGTATCTCATATTCGGTCCA 59.745 47.826 0.00 0.00 32.95 4.02
335 354 4.523173 ACATCCGTGTATCTCATATTCGGT 59.477 41.667 0.00 0.00 36.63 4.69
338 357 4.627467 GCCACATCCGTGTATCTCATATTC 59.373 45.833 0.00 0.00 41.93 1.75
339 358 4.563580 GGCCACATCCGTGTATCTCATATT 60.564 45.833 0.00 0.00 41.93 1.28
361 380 3.070018 AGCACTTCTCAAATCTTGTCGG 58.930 45.455 0.00 0.00 0.00 4.79
374 393 1.612726 GGGCACTGAATGAGCACTTCT 60.613 52.381 0.00 0.00 32.81 2.85
376 395 0.111061 TGGGCACTGAATGAGCACTT 59.889 50.000 0.00 0.00 36.61 3.16
427 446 2.418083 CCTGCAAATTCGGGCCCTC 61.418 63.158 22.43 0.00 0.00 4.30
429 448 2.679996 ACCTGCAAATTCGGGCCC 60.680 61.111 13.57 13.57 35.90 5.80
436 455 4.323417 TCTACATCAACGACCTGCAAATT 58.677 39.130 0.00 0.00 0.00 1.82
439 458 3.261580 CATCTACATCAACGACCTGCAA 58.738 45.455 0.00 0.00 0.00 4.08
472 491 7.865820 AGAGAGAAAAACCCATCATCAATAGA 58.134 34.615 0.00 0.00 0.00 1.98
484 503 4.327680 AGCACACATAGAGAGAAAAACCC 58.672 43.478 0.00 0.00 0.00 4.11
485 504 5.389935 CGAAGCACACATAGAGAGAAAAACC 60.390 44.000 0.00 0.00 0.00 3.27
486 505 5.405571 TCGAAGCACACATAGAGAGAAAAAC 59.594 40.000 0.00 0.00 0.00 2.43
487 506 5.538118 TCGAAGCACACATAGAGAGAAAAA 58.462 37.500 0.00 0.00 0.00 1.94
488 507 5.134202 TCGAAGCACACATAGAGAGAAAA 57.866 39.130 0.00 0.00 0.00 2.29
492 511 5.220548 CCAAATTCGAAGCACACATAGAGAG 60.221 44.000 3.35 0.00 0.00 3.20
494 513 4.631377 TCCAAATTCGAAGCACACATAGAG 59.369 41.667 3.35 0.00 0.00 2.43
595 615 7.830739 ACCTGCTCCATGATAAAACTTAAAAG 58.169 34.615 0.00 0.00 0.00 2.27
598 618 7.067008 GCTTACCTGCTCCATGATAAAACTTAA 59.933 37.037 0.00 0.00 0.00 1.85
605 625 4.502105 TTGCTTACCTGCTCCATGATAA 57.498 40.909 0.00 0.00 0.00 1.75
618 639 1.235724 GGGCGATACCATTGCTTACC 58.764 55.000 0.00 0.00 42.05 2.85
619 640 0.865769 CGGGCGATACCATTGCTTAC 59.134 55.000 0.00 0.00 42.05 2.34
625 646 3.596214 GTGAATATCGGGCGATACCATT 58.404 45.455 0.00 0.00 42.05 3.16
634 655 0.319641 GACGAGGGTGAATATCGGGC 60.320 60.000 0.00 0.00 40.67 6.13
653 674 1.484240 GAGTGGGGATTGGAGAGACAG 59.516 57.143 0.00 0.00 0.00 3.51
667 688 4.180946 CGAGCGTCGGAGAGTGGG 62.181 72.222 0.00 0.00 36.95 4.61
672 693 1.812507 TTCGATCGAGCGTCGGAGA 60.813 57.895 23.61 0.00 40.88 3.71
716 737 1.289276 CAGCAACCACAACTTTTGCC 58.711 50.000 2.03 0.00 45.58 4.52
819 840 6.479990 GTGAGGTCATCATCGTTGATAATTCA 59.520 38.462 8.61 7.92 40.70 2.57
867 889 2.154569 GTTAGGTGTCGGCGTACGC 61.155 63.158 31.54 31.54 43.86 4.42
987 1009 3.574749 CTGGGATCTGGATCTCTCTTGA 58.425 50.000 11.18 0.00 39.07 3.02
988 1010 2.037511 GCTGGGATCTGGATCTCTCTTG 59.962 54.545 11.18 2.02 39.07 3.02
989 1011 2.328319 GCTGGGATCTGGATCTCTCTT 58.672 52.381 11.18 0.00 39.07 2.85
990 1012 1.822854 CGCTGGGATCTGGATCTCTCT 60.823 57.143 11.18 0.00 39.07 3.10
994 1016 0.755686 GTTCGCTGGGATCTGGATCT 59.244 55.000 9.96 0.00 37.92 2.75
1004 1026 0.788391 GTGTTTACGAGTTCGCTGGG 59.212 55.000 0.73 0.00 44.43 4.45
1030 1052 6.264088 GGGAGTATACGTAATAGCACTATGC 58.736 44.000 0.00 0.00 45.46 3.14
1031 1053 6.183360 GGGGGAGTATACGTAATAGCACTATG 60.183 46.154 0.00 0.00 0.00 2.23
1038 1060 5.182760 GTGAGTGGGGGAGTATACGTAATAG 59.817 48.000 0.00 0.00 0.00 1.73
1039 1061 5.072741 GTGAGTGGGGGAGTATACGTAATA 58.927 45.833 0.00 0.00 0.00 0.98
1040 1062 3.893813 GTGAGTGGGGGAGTATACGTAAT 59.106 47.826 0.00 0.00 0.00 1.89
1041 1063 3.290710 GTGAGTGGGGGAGTATACGTAA 58.709 50.000 0.00 0.00 0.00 3.18
1046 1102 0.266753 GGGGTGAGTGGGGGAGTATA 59.733 60.000 0.00 0.00 0.00 1.47
1053 1109 4.715130 TCTCGGGGGTGAGTGGGG 62.715 72.222 0.00 0.00 37.28 4.96
1074 1130 2.937379 CTTCCTCGCCATGCCTCCTG 62.937 65.000 0.00 0.00 0.00 3.86
1379 1441 3.234630 TTCGTCAGTGAAGGCCGGG 62.235 63.158 2.18 0.00 0.00 5.73
1417 1479 4.269183 TCACACATAATAACAGGCAAGGG 58.731 43.478 0.00 0.00 0.00 3.95
1424 1486 7.136772 CCTTGCATGATCACACATAATAACAG 58.863 38.462 0.00 0.00 0.00 3.16
1426 1488 5.916883 GCCTTGCATGATCACACATAATAAC 59.083 40.000 0.00 0.00 0.00 1.89
1437 1505 2.635714 CACTACAGCCTTGCATGATCA 58.364 47.619 0.00 0.00 0.00 2.92
1455 1523 7.042992 CGGAAAGGAGAAAAATTTAACAACCAC 60.043 37.037 0.00 0.00 0.00 4.16
1456 1524 6.981559 CGGAAAGGAGAAAAATTTAACAACCA 59.018 34.615 0.00 0.00 0.00 3.67
1457 1525 6.073980 GCGGAAAGGAGAAAAATTTAACAACC 60.074 38.462 0.00 0.00 0.00 3.77
1460 1528 5.534407 GGCGGAAAGGAGAAAAATTTAACA 58.466 37.500 0.00 0.00 0.00 2.41
1461 1529 4.619760 CGGCGGAAAGGAGAAAAATTTAAC 59.380 41.667 0.00 0.00 0.00 2.01
1462 1530 4.321378 CCGGCGGAAAGGAGAAAAATTTAA 60.321 41.667 24.41 0.00 0.00 1.52
1463 1531 3.191791 CCGGCGGAAAGGAGAAAAATTTA 59.808 43.478 24.41 0.00 0.00 1.40
1464 1532 2.029380 CCGGCGGAAAGGAGAAAAATTT 60.029 45.455 24.41 0.00 0.00 1.82
1465 1533 1.544246 CCGGCGGAAAGGAGAAAAATT 59.456 47.619 24.41 0.00 0.00 1.82
1466 1534 1.173913 CCGGCGGAAAGGAGAAAAAT 58.826 50.000 24.41 0.00 0.00 1.82
1468 1536 1.969589 GCCGGCGGAAAGGAGAAAA 60.970 57.895 33.44 0.00 0.00 2.29
1470 1538 4.752879 CGCCGGCGGAAAGGAGAA 62.753 66.667 40.50 0.00 35.56 2.87
1513 1581 0.108804 CCTACACTACACGCCACCAG 60.109 60.000 0.00 0.00 0.00 4.00
1520 1588 6.561614 AGAAATGTACATCCTACACTACACG 58.438 40.000 9.23 0.00 0.00 4.49
1522 1590 9.431887 GAAAAGAAATGTACATCCTACACTACA 57.568 33.333 9.23 0.00 0.00 2.74
1556 1627 8.615211 ACGACGTTATATACAGTACATCTCAAA 58.385 33.333 0.00 0.00 0.00 2.69
1561 1632 8.466799 CACAAACGACGTTATATACAGTACATC 58.533 37.037 14.59 0.00 0.00 3.06
1562 1633 7.970061 ACACAAACGACGTTATATACAGTACAT 59.030 33.333 14.59 0.00 0.00 2.29
1563 1634 7.304735 ACACAAACGACGTTATATACAGTACA 58.695 34.615 14.59 0.00 0.00 2.90
1565 1636 8.664798 ACTACACAAACGACGTTATATACAGTA 58.335 33.333 14.59 9.13 0.00 2.74
1566 1637 7.530010 ACTACACAAACGACGTTATATACAGT 58.470 34.615 14.59 10.20 0.00 3.55
1567 1638 7.959718 ACTACACAAACGACGTTATATACAG 57.040 36.000 14.59 9.60 0.00 2.74
1616 1693 0.916086 ACAGATCGGGGGCAACATTA 59.084 50.000 0.00 0.00 39.74 1.90
1635 1712 1.378531 ACGTCAGCTCAAGTTTGCAA 58.621 45.000 0.00 0.00 0.00 4.08
1654 1731 5.408299 GCGTGTGATATTAGGTGAATGCATA 59.592 40.000 0.00 0.00 0.00 3.14
1664 1741 2.816689 TCCGTTGCGTGTGATATTAGG 58.183 47.619 0.00 0.00 0.00 2.69
1718 1795 0.320050 TTGCGTGTGCTCCTCATGTA 59.680 50.000 0.00 0.00 43.34 2.29
1720 1797 0.806868 ATTTGCGTGTGCTCCTCATG 59.193 50.000 0.00 0.00 43.34 3.07
1721 1798 0.806868 CATTTGCGTGTGCTCCTCAT 59.193 50.000 0.00 0.00 43.34 2.90
1722 1799 0.250252 TCATTTGCGTGTGCTCCTCA 60.250 50.000 0.00 0.00 43.34 3.86
1723 1800 0.445436 CTCATTTGCGTGTGCTCCTC 59.555 55.000 0.00 0.00 43.34 3.71
1724 1801 0.957395 CCTCATTTGCGTGTGCTCCT 60.957 55.000 0.00 0.00 43.34 3.69
1725 1802 1.237285 ACCTCATTTGCGTGTGCTCC 61.237 55.000 0.00 0.00 43.34 4.70
1726 1803 0.593128 AACCTCATTTGCGTGTGCTC 59.407 50.000 0.00 0.00 43.34 4.26
1727 1804 0.593128 GAACCTCATTTGCGTGTGCT 59.407 50.000 0.00 0.00 43.34 4.40
1728 1805 0.593128 AGAACCTCATTTGCGTGTGC 59.407 50.000 0.00 0.00 43.20 4.57
1729 1806 2.290367 TCAAGAACCTCATTTGCGTGTG 59.710 45.455 0.00 0.00 0.00 3.82
1730 1807 2.571212 TCAAGAACCTCATTTGCGTGT 58.429 42.857 0.00 0.00 0.00 4.49
1731 1808 3.837213 ATCAAGAACCTCATTTGCGTG 57.163 42.857 0.00 0.00 0.00 5.34
1732 1809 5.185454 TCATATCAAGAACCTCATTTGCGT 58.815 37.500 0.00 0.00 0.00 5.24
1733 1810 5.739752 TCATATCAAGAACCTCATTTGCG 57.260 39.130 0.00 0.00 0.00 4.85
1734 1811 7.148188 TGTCTTCATATCAAGAACCTCATTTGC 60.148 37.037 0.00 0.00 34.11 3.68
1735 1812 8.272545 TGTCTTCATATCAAGAACCTCATTTG 57.727 34.615 0.00 0.00 34.11 2.32
1740 1817 9.823647 TCTTTATGTCTTCATATCAAGAACCTC 57.176 33.333 0.00 0.00 33.83 3.85
1751 1828 9.739276 ACCAGTTCATTTCTTTATGTCTTCATA 57.261 29.630 0.00 0.00 35.70 2.15
1753 1830 7.174946 GGACCAGTTCATTTCTTTATGTCTTCA 59.825 37.037 0.00 0.00 0.00 3.02
1754 1831 7.362142 GGGACCAGTTCATTTCTTTATGTCTTC 60.362 40.741 0.00 0.00 0.00 2.87
1755 1832 6.434340 GGGACCAGTTCATTTCTTTATGTCTT 59.566 38.462 0.00 0.00 0.00 3.01
1756 1833 5.946377 GGGACCAGTTCATTTCTTTATGTCT 59.054 40.000 0.00 0.00 0.00 3.41
1758 1835 5.476945 GTGGGACCAGTTCATTTCTTTATGT 59.523 40.000 0.00 0.00 0.00 2.29
1759 1836 5.476599 TGTGGGACCAGTTCATTTCTTTATG 59.523 40.000 0.00 0.00 0.00 1.90
1760 1837 5.640147 TGTGGGACCAGTTCATTTCTTTAT 58.360 37.500 0.00 0.00 0.00 1.40
1761 1838 5.055265 TGTGGGACCAGTTCATTTCTTTA 57.945 39.130 0.00 0.00 0.00 1.85
1762 1839 3.909732 TGTGGGACCAGTTCATTTCTTT 58.090 40.909 0.00 0.00 0.00 2.52
1763 1840 3.593442 TGTGGGACCAGTTCATTTCTT 57.407 42.857 0.00 0.00 0.00 2.52
1764 1841 3.814504 ATGTGGGACCAGTTCATTTCT 57.185 42.857 0.00 0.00 0.00 2.52
1765 1842 7.639113 TTTATATGTGGGACCAGTTCATTTC 57.361 36.000 0.00 0.00 0.00 2.17
1766 1843 8.608185 AATTTATATGTGGGACCAGTTCATTT 57.392 30.769 0.00 0.00 0.00 2.32
1767 1844 7.013274 CGAATTTATATGTGGGACCAGTTCATT 59.987 37.037 0.00 0.00 0.00 2.57
1768 1845 6.486657 CGAATTTATATGTGGGACCAGTTCAT 59.513 38.462 0.00 0.00 0.00 2.57
1769 1846 5.820423 CGAATTTATATGTGGGACCAGTTCA 59.180 40.000 0.00 0.00 0.00 3.18
1771 1848 5.996644 TCGAATTTATATGTGGGACCAGTT 58.003 37.500 0.00 0.00 0.00 3.16
1774 1851 7.704578 TTTTTCGAATTTATATGTGGGACCA 57.295 32.000 0.00 0.00 0.00 4.02
1786 1863 9.997482 GATAGCACTGGTAATTTTTCGAATTTA 57.003 29.630 0.00 0.00 0.00 1.40
1787 1864 7.973944 GGATAGCACTGGTAATTTTTCGAATTT 59.026 33.333 0.00 0.00 0.00 1.82
1788 1865 7.416326 GGGATAGCACTGGTAATTTTTCGAATT 60.416 37.037 0.00 0.00 0.00 2.17
1789 1866 6.039382 GGGATAGCACTGGTAATTTTTCGAAT 59.961 38.462 0.00 0.00 0.00 3.34
1790 1867 5.355910 GGGATAGCACTGGTAATTTTTCGAA 59.644 40.000 0.00 0.00 0.00 3.71
1792 1869 4.638421 TGGGATAGCACTGGTAATTTTTCG 59.362 41.667 0.00 0.00 0.00 3.46
1793 1870 6.152831 ACTTGGGATAGCACTGGTAATTTTTC 59.847 38.462 0.00 0.00 0.00 2.29
1794 1871 6.016555 ACTTGGGATAGCACTGGTAATTTTT 58.983 36.000 0.00 0.00 0.00 1.94
1795 1872 5.580022 ACTTGGGATAGCACTGGTAATTTT 58.420 37.500 0.00 0.00 0.00 1.82
1796 1873 5.193099 ACTTGGGATAGCACTGGTAATTT 57.807 39.130 0.00 0.00 0.00 1.82
1799 1876 3.844211 AGAACTTGGGATAGCACTGGTAA 59.156 43.478 0.00 0.00 0.00 2.85
1801 1878 2.237392 GAGAACTTGGGATAGCACTGGT 59.763 50.000 0.00 0.00 0.00 4.00
1802 1879 2.237143 TGAGAACTTGGGATAGCACTGG 59.763 50.000 0.00 0.00 0.00 4.00
1803 1880 3.616956 TGAGAACTTGGGATAGCACTG 57.383 47.619 0.00 0.00 0.00 3.66
1804 1881 3.584848 AGTTGAGAACTTGGGATAGCACT 59.415 43.478 0.00 0.00 39.04 4.40
1805 1882 3.935828 GAGTTGAGAACTTGGGATAGCAC 59.064 47.826 0.00 0.00 43.03 4.40
1807 1884 3.055094 TGGAGTTGAGAACTTGGGATAGC 60.055 47.826 0.00 0.00 43.03 2.97
1809 1886 5.779241 AATGGAGTTGAGAACTTGGGATA 57.221 39.130 0.00 0.00 43.03 2.59
1812 1889 6.183347 AGATTAATGGAGTTGAGAACTTGGG 58.817 40.000 0.00 0.00 43.03 4.12
1813 1890 7.693969 AAGATTAATGGAGTTGAGAACTTGG 57.306 36.000 0.00 0.00 43.03 3.61
1814 1891 8.239998 GGAAAGATTAATGGAGTTGAGAACTTG 58.760 37.037 0.00 0.00 43.03 3.16
1816 1893 7.694093 AGGAAAGATTAATGGAGTTGAGAACT 58.306 34.615 0.00 0.00 46.38 3.01
1817 1894 7.929941 AGGAAAGATTAATGGAGTTGAGAAC 57.070 36.000 0.00 0.00 0.00 3.01
1818 1895 7.611855 GGAAGGAAAGATTAATGGAGTTGAGAA 59.388 37.037 0.00 0.00 0.00 2.87
1820 1897 6.319911 GGGAAGGAAAGATTAATGGAGTTGAG 59.680 42.308 0.00 0.00 0.00 3.02
1821 1898 6.187682 GGGAAGGAAAGATTAATGGAGTTGA 58.812 40.000 0.00 0.00 0.00 3.18
1822 1899 5.066505 CGGGAAGGAAAGATTAATGGAGTTG 59.933 44.000 0.00 0.00 0.00 3.16
1824 1901 4.781934 CGGGAAGGAAAGATTAATGGAGT 58.218 43.478 0.00 0.00 0.00 3.85
1825 1902 3.565902 GCGGGAAGGAAAGATTAATGGAG 59.434 47.826 0.00 0.00 0.00 3.86
1827 1904 2.290641 CGCGGGAAGGAAAGATTAATGG 59.709 50.000 0.00 0.00 0.00 3.16
1830 1907 3.337694 TTCGCGGGAAGGAAAGATTAA 57.662 42.857 11.32 0.00 0.00 1.40
1831 1908 3.337694 TTTCGCGGGAAGGAAAGATTA 57.662 42.857 14.94 0.00 32.80 1.75
1832 1909 2.194201 TTTCGCGGGAAGGAAAGATT 57.806 45.000 14.94 0.00 32.80 2.40
1833 1910 2.194201 TTTTCGCGGGAAGGAAAGAT 57.806 45.000 14.94 0.00 34.03 2.40
1853 2004 9.247861 AGTTGAAGCAAGATTAATGGAGTTATT 57.752 29.630 0.00 0.00 0.00 1.40
1856 2007 6.151817 GGAGTTGAAGCAAGATTAATGGAGTT 59.848 38.462 0.00 0.00 0.00 3.01
1857 2008 5.649831 GGAGTTGAAGCAAGATTAATGGAGT 59.350 40.000 0.00 0.00 0.00 3.85
1858 2009 5.220739 CGGAGTTGAAGCAAGATTAATGGAG 60.221 44.000 0.00 0.00 0.00 3.86
1859 2010 4.635765 CGGAGTTGAAGCAAGATTAATGGA 59.364 41.667 0.00 0.00 0.00 3.41
1860 2011 4.396166 ACGGAGTTGAAGCAAGATTAATGG 59.604 41.667 0.00 0.00 37.78 3.16
1861 2012 5.551760 ACGGAGTTGAAGCAAGATTAATG 57.448 39.130 0.00 0.00 37.78 1.90
1862 2013 6.653320 TGTTACGGAGTTGAAGCAAGATTAAT 59.347 34.615 0.00 0.00 37.78 1.40
1863 2014 5.992829 TGTTACGGAGTTGAAGCAAGATTAA 59.007 36.000 0.00 0.00 37.78 1.40
1864 2015 5.543714 TGTTACGGAGTTGAAGCAAGATTA 58.456 37.500 0.00 0.00 37.78 1.75
1865 2016 4.385825 TGTTACGGAGTTGAAGCAAGATT 58.614 39.130 0.00 0.00 37.78 2.40
1867 2018 3.462483 TGTTACGGAGTTGAAGCAAGA 57.538 42.857 0.00 0.00 37.78 3.02
1868 2019 4.527564 CTTTGTTACGGAGTTGAAGCAAG 58.472 43.478 0.00 0.00 37.78 4.01
1874 2025 5.334569 GCTTTATGCTTTGTTACGGAGTTGA 60.335 40.000 0.00 0.00 39.68 3.18
1875 2026 4.851558 GCTTTATGCTTTGTTACGGAGTTG 59.148 41.667 0.00 0.00 39.68 3.16
1876 2027 4.517453 TGCTTTATGCTTTGTTACGGAGTT 59.483 37.500 0.00 0.00 42.28 3.01
1877 2028 4.069304 TGCTTTATGCTTTGTTACGGAGT 58.931 39.130 0.00 0.00 44.08 3.85
1878 2029 4.678509 TGCTTTATGCTTTGTTACGGAG 57.321 40.909 0.00 0.00 43.37 4.63
1879 2030 6.724263 CATATGCTTTATGCTTTGTTACGGA 58.276 36.000 0.00 0.00 43.37 4.69
1880 2031 5.399301 GCATATGCTTTATGCTTTGTTACGG 59.601 40.000 20.64 0.00 44.93 4.02
1881 2032 6.424557 GCATATGCTTTATGCTTTGTTACG 57.575 37.500 20.64 0.00 44.93 3.18
1891 2042 9.877137 TTTTACTCGTAATGCATATGCTTTATG 57.123 29.630 31.13 31.13 43.37 1.90
1895 2046 8.076178 GGAATTTTACTCGTAATGCATATGCTT 58.924 33.333 27.13 18.93 42.66 3.91
1896 2047 7.445402 AGGAATTTTACTCGTAATGCATATGCT 59.555 33.333 27.13 11.71 42.66 3.79
1897 2048 7.584987 AGGAATTTTACTCGTAATGCATATGC 58.415 34.615 21.09 21.09 42.50 3.14
1898 2049 9.385902 CAAGGAATTTTACTCGTAATGCATATG 57.614 33.333 0.00 0.00 0.00 1.78
1899 2050 9.337396 TCAAGGAATTTTACTCGTAATGCATAT 57.663 29.630 0.00 0.00 0.00 1.78
1900 2051 8.609176 GTCAAGGAATTTTACTCGTAATGCATA 58.391 33.333 0.00 0.00 0.00 3.14
1902 2053 6.428465 TGTCAAGGAATTTTACTCGTAATGCA 59.572 34.615 0.00 0.00 0.00 3.96
1903 2054 6.837992 TGTCAAGGAATTTTACTCGTAATGC 58.162 36.000 0.00 0.00 0.00 3.56
1904 2055 7.481798 GCTTGTCAAGGAATTTTACTCGTAATG 59.518 37.037 14.40 0.00 0.00 1.90
1905 2056 7.390718 AGCTTGTCAAGGAATTTTACTCGTAAT 59.609 33.333 14.40 0.00 0.00 1.89
1909 2060 5.613358 AGCTTGTCAAGGAATTTTACTCG 57.387 39.130 14.40 0.00 0.00 4.18
1916 2067 8.253113 CCAACAATTATAGCTTGTCAAGGAATT 58.747 33.333 14.40 0.00 35.84 2.17
1917 2068 7.631377 GCCAACAATTATAGCTTGTCAAGGAAT 60.631 37.037 14.40 0.00 35.84 3.01
1918 2069 6.350110 GCCAACAATTATAGCTTGTCAAGGAA 60.350 38.462 14.40 0.00 35.84 3.36
1919 2070 5.125417 GCCAACAATTATAGCTTGTCAAGGA 59.875 40.000 14.40 0.00 35.84 3.36
1920 2071 5.343249 GCCAACAATTATAGCTTGTCAAGG 58.657 41.667 14.40 0.00 35.84 3.61
1921 2072 5.030295 CGCCAACAATTATAGCTTGTCAAG 58.970 41.667 8.31 8.31 35.84 3.02
1922 2073 4.142491 CCGCCAACAATTATAGCTTGTCAA 60.142 41.667 0.00 0.00 35.84 3.18
1923 2074 3.376859 CCGCCAACAATTATAGCTTGTCA 59.623 43.478 0.00 0.00 35.84 3.58
1924 2075 3.792124 GCCGCCAACAATTATAGCTTGTC 60.792 47.826 0.00 0.00 35.84 3.18
1925 2076 2.099098 GCCGCCAACAATTATAGCTTGT 59.901 45.455 0.00 0.00 38.44 3.16
1927 2078 2.099098 GTGCCGCCAACAATTATAGCTT 59.901 45.455 0.00 0.00 0.00 3.74
1929 2080 1.403679 TGTGCCGCCAACAATTATAGC 59.596 47.619 0.00 0.00 0.00 2.97
1930 2081 2.223479 GGTGTGCCGCCAACAATTATAG 60.223 50.000 0.46 0.00 33.65 1.31
1932 2083 0.530288 GGTGTGCCGCCAACAATTAT 59.470 50.000 0.46 0.00 33.65 1.28
1933 2084 1.960612 GGTGTGCCGCCAACAATTA 59.039 52.632 0.46 0.00 33.65 1.40
1951 2102 3.027170 GATGACCAGTTGCCACGCG 62.027 63.158 3.53 3.53 0.00 6.01
1952 2103 1.514678 TTGATGACCAGTTGCCACGC 61.515 55.000 0.00 0.00 0.00 5.34
1953 2104 1.131126 GATTGATGACCAGTTGCCACG 59.869 52.381 0.00 0.00 0.00 4.94
1955 2106 2.618816 GGAGATTGATGACCAGTTGCCA 60.619 50.000 0.00 0.00 0.00 4.92
1957 2108 2.019984 GGGAGATTGATGACCAGTTGC 58.980 52.381 0.00 0.00 0.00 4.17
1958 2109 2.093500 TCGGGAGATTGATGACCAGTTG 60.093 50.000 0.00 0.00 0.00 3.16
1959 2110 2.093447 GTCGGGAGATTGATGACCAGTT 60.093 50.000 0.00 0.00 43.27 3.16
1960 2111 1.482593 GTCGGGAGATTGATGACCAGT 59.517 52.381 0.00 0.00 43.27 4.00
1961 2112 1.202580 GGTCGGGAGATTGATGACCAG 60.203 57.143 4.90 0.00 46.55 4.00
1962 2113 0.830648 GGTCGGGAGATTGATGACCA 59.169 55.000 4.90 0.00 46.55 4.02
1963 2114 3.688553 GGTCGGGAGATTGATGACC 57.311 57.895 0.00 0.00 43.27 4.02
1964 2115 2.691409 TTGGTCGGGAGATTGATGAC 57.309 50.000 0.00 0.00 43.27 3.06
1965 2116 3.009033 AGTTTTGGTCGGGAGATTGATGA 59.991 43.478 0.00 0.00 43.27 2.92
1966 2117 3.347216 AGTTTTGGTCGGGAGATTGATG 58.653 45.455 0.00 0.00 43.27 3.07
1967 2118 3.721087 AGTTTTGGTCGGGAGATTGAT 57.279 42.857 0.00 0.00 43.27 2.57
1968 2119 4.627284 TTAGTTTTGGTCGGGAGATTGA 57.373 40.909 0.00 0.00 43.27 2.57
1969 2120 6.995511 TTATTAGTTTTGGTCGGGAGATTG 57.004 37.500 0.00 0.00 43.27 2.67
1970 2121 7.116736 ACATTATTAGTTTTGGTCGGGAGATT 58.883 34.615 0.00 0.00 43.27 2.40
1971 2122 6.659824 ACATTATTAGTTTTGGTCGGGAGAT 58.340 36.000 0.00 0.00 43.27 2.75
1972 2123 6.057321 ACATTATTAGTTTTGGTCGGGAGA 57.943 37.500 0.00 0.00 0.00 3.71
1973 2124 6.404293 CCAACATTATTAGTTTTGGTCGGGAG 60.404 42.308 0.00 0.00 33.39 4.30
1974 2125 5.416326 CCAACATTATTAGTTTTGGTCGGGA 59.584 40.000 0.00 0.00 33.39 5.14
1975 2126 5.646606 CCAACATTATTAGTTTTGGTCGGG 58.353 41.667 0.00 0.00 33.39 5.14
1976 2127 5.099575 GCCAACATTATTAGTTTTGGTCGG 58.900 41.667 6.13 0.00 39.20 4.79
1977 2128 5.704888 TGCCAACATTATTAGTTTTGGTCG 58.295 37.500 6.13 0.00 39.20 4.79
1978 2129 6.926272 TGTTGCCAACATTATTAGTTTTGGTC 59.074 34.615 6.08 1.11 39.20 4.02
1979 2130 6.821388 TGTTGCCAACATTATTAGTTTTGGT 58.179 32.000 6.08 0.00 39.20 3.67
1980 2131 7.721286 TTGTTGCCAACATTATTAGTTTTGG 57.279 32.000 11.67 0.93 41.79 3.28
1981 2132 8.281893 CCTTTGTTGCCAACATTATTAGTTTTG 58.718 33.333 11.67 0.00 41.79 2.44
1982 2133 7.041440 GCCTTTGTTGCCAACATTATTAGTTTT 60.041 33.333 11.67 0.00 41.79 2.43
1983 2134 6.426633 GCCTTTGTTGCCAACATTATTAGTTT 59.573 34.615 11.67 0.00 41.79 2.66
1984 2135 5.931724 GCCTTTGTTGCCAACATTATTAGTT 59.068 36.000 11.67 0.00 41.79 2.24
1985 2136 5.478407 GCCTTTGTTGCCAACATTATTAGT 58.522 37.500 11.67 0.00 41.79 2.24
1986 2137 4.562394 CGCCTTTGTTGCCAACATTATTAG 59.438 41.667 11.67 4.51 41.79 1.73
1987 2138 4.489810 CGCCTTTGTTGCCAACATTATTA 58.510 39.130 11.67 0.00 41.79 0.98
1988 2139 3.324993 CGCCTTTGTTGCCAACATTATT 58.675 40.909 11.67 0.00 41.79 1.40
1989 2140 2.353605 CCGCCTTTGTTGCCAACATTAT 60.354 45.455 11.67 0.00 41.79 1.28
1990 2141 1.000283 CCGCCTTTGTTGCCAACATTA 60.000 47.619 11.67 2.05 41.79 1.90
1991 2142 0.249826 CCGCCTTTGTTGCCAACATT 60.250 50.000 11.67 0.00 41.79 2.71
1992 2143 1.367102 CCGCCTTTGTTGCCAACAT 59.633 52.632 11.67 0.00 41.79 2.71
1993 2144 2.811101 CCGCCTTTGTTGCCAACA 59.189 55.556 6.08 6.08 40.21 3.33
1994 2145 2.661537 GCCGCCTTTGTTGCCAAC 60.662 61.111 0.00 0.00 0.00 3.77
1995 2146 2.641439 CTTGCCGCCTTTGTTGCCAA 62.641 55.000 0.00 0.00 0.00 4.52
1996 2147 3.149338 CTTGCCGCCTTTGTTGCCA 62.149 57.895 0.00 0.00 0.00 4.92
1997 2148 2.356194 CTTGCCGCCTTTGTTGCC 60.356 61.111 0.00 0.00 0.00 4.52
1998 2149 2.356194 CCTTGCCGCCTTTGTTGC 60.356 61.111 0.00 0.00 0.00 4.17
1999 2150 0.103937 TTTCCTTGCCGCCTTTGTTG 59.896 50.000 0.00 0.00 0.00 3.33
2000 2151 0.827368 TTTTCCTTGCCGCCTTTGTT 59.173 45.000 0.00 0.00 0.00 2.83
2001 2152 0.827368 TTTTTCCTTGCCGCCTTTGT 59.173 45.000 0.00 0.00 0.00 2.83
2002 2153 1.217001 GTTTTTCCTTGCCGCCTTTG 58.783 50.000 0.00 0.00 0.00 2.77
2003 2154 0.105964 GGTTTTTCCTTGCCGCCTTT 59.894 50.000 0.00 0.00 0.00 3.11
2004 2155 1.045911 TGGTTTTTCCTTGCCGCCTT 61.046 50.000 0.00 0.00 37.07 4.35
2005 2156 0.831711 ATGGTTTTTCCTTGCCGCCT 60.832 50.000 0.00 0.00 37.07 5.52
2006 2157 0.670239 CATGGTTTTTCCTTGCCGCC 60.670 55.000 0.00 0.00 35.18 6.13
2007 2158 0.316841 TCATGGTTTTTCCTTGCCGC 59.683 50.000 0.00 0.00 40.06 6.53
2008 2159 2.403259 GTTCATGGTTTTTCCTTGCCG 58.597 47.619 0.00 0.00 40.06 5.69
2009 2160 2.103941 TGGTTCATGGTTTTTCCTTGCC 59.896 45.455 0.00 0.00 40.06 4.52
2010 2161 3.181466 ACTGGTTCATGGTTTTTCCTTGC 60.181 43.478 0.00 0.00 40.06 4.01
2011 2162 4.099266 TGACTGGTTCATGGTTTTTCCTTG 59.901 41.667 0.00 0.00 41.14 3.61
2012 2163 4.285863 TGACTGGTTCATGGTTTTTCCTT 58.714 39.130 0.00 0.00 37.07 3.36
2013 2164 3.909732 TGACTGGTTCATGGTTTTTCCT 58.090 40.909 0.00 0.00 37.07 3.36
2014 2165 4.664150 TTGACTGGTTCATGGTTTTTCC 57.336 40.909 0.00 0.00 32.84 3.13
2015 2166 6.370166 TGTTTTTGACTGGTTCATGGTTTTTC 59.630 34.615 0.00 0.00 32.84 2.29
2016 2167 6.148645 GTGTTTTTGACTGGTTCATGGTTTTT 59.851 34.615 0.00 0.00 32.84 1.94
2017 2168 5.641636 GTGTTTTTGACTGGTTCATGGTTTT 59.358 36.000 0.00 0.00 32.84 2.43
2018 2169 5.175127 GTGTTTTTGACTGGTTCATGGTTT 58.825 37.500 0.00 0.00 32.84 3.27
2019 2170 4.382577 GGTGTTTTTGACTGGTTCATGGTT 60.383 41.667 0.00 0.00 32.84 3.67
2020 2171 3.132111 GGTGTTTTTGACTGGTTCATGGT 59.868 43.478 0.00 0.00 32.84 3.55
2021 2172 3.716601 GGTGTTTTTGACTGGTTCATGG 58.283 45.455 0.00 0.00 32.84 3.66
2022 2173 3.066064 TCGGTGTTTTTGACTGGTTCATG 59.934 43.478 0.00 0.00 32.84 3.07
2023 2174 3.283751 TCGGTGTTTTTGACTGGTTCAT 58.716 40.909 0.00 0.00 32.84 2.57
2024 2175 2.712709 TCGGTGTTTTTGACTGGTTCA 58.287 42.857 0.00 0.00 0.00 3.18
2025 2176 3.768468 TTCGGTGTTTTTGACTGGTTC 57.232 42.857 0.00 0.00 0.00 3.62
2026 2177 4.239304 GTTTTCGGTGTTTTTGACTGGTT 58.761 39.130 0.00 0.00 0.00 3.67
2027 2178 3.256136 TGTTTTCGGTGTTTTTGACTGGT 59.744 39.130 0.00 0.00 0.00 4.00
2028 2179 3.839293 TGTTTTCGGTGTTTTTGACTGG 58.161 40.909 0.00 0.00 0.00 4.00
2029 2180 4.502645 GGATGTTTTCGGTGTTTTTGACTG 59.497 41.667 0.00 0.00 0.00 3.51
2030 2181 4.678622 GGATGTTTTCGGTGTTTTTGACT 58.321 39.130 0.00 0.00 0.00 3.41
2031 2182 3.484285 CGGATGTTTTCGGTGTTTTTGAC 59.516 43.478 0.00 0.00 0.00 3.18
2032 2183 3.128938 ACGGATGTTTTCGGTGTTTTTGA 59.871 39.130 0.00 0.00 36.61 2.69
2033 2184 3.440228 ACGGATGTTTTCGGTGTTTTTG 58.560 40.909 0.00 0.00 36.61 2.44
2034 2185 3.786516 ACGGATGTTTTCGGTGTTTTT 57.213 38.095 0.00 0.00 36.61 1.94
2035 2186 3.786516 AACGGATGTTTTCGGTGTTTT 57.213 38.095 0.00 0.00 37.89 2.43
2036 2187 3.786516 AAACGGATGTTTTCGGTGTTT 57.213 38.095 0.00 0.00 45.89 2.83
2052 2203 2.412325 CCGAAATTTCCGAGGTGAAACG 60.412 50.000 12.54 0.00 37.08 3.60
2053 2204 2.667448 GCCGAAATTTCCGAGGTGAAAC 60.667 50.000 12.54 0.00 37.08 2.78
2054 2205 1.538075 GCCGAAATTTCCGAGGTGAAA 59.462 47.619 12.54 0.00 38.51 2.69
2055 2206 1.161843 GCCGAAATTTCCGAGGTGAA 58.838 50.000 12.54 0.00 0.00 3.18
2056 2207 0.675522 GGCCGAAATTTCCGAGGTGA 60.676 55.000 12.54 0.00 0.00 4.02
2057 2208 1.800681 GGCCGAAATTTCCGAGGTG 59.199 57.895 12.54 0.00 0.00 4.00
2058 2209 1.743995 CGGCCGAAATTTCCGAGGT 60.744 57.895 24.07 0.00 45.53 3.85
2059 2210 1.448893 TCGGCCGAAATTTCCGAGG 60.449 57.895 28.99 10.03 46.12 4.63
2060 2211 4.195308 TCGGCCGAAATTTCCGAG 57.805 55.556 28.99 4.68 46.12 4.63
2062 2213 0.519961 AGTTTCGGCCGAAATTTCCG 59.480 50.000 45.17 11.67 44.52 4.30
2063 2214 1.538075 TCAGTTTCGGCCGAAATTTCC 59.462 47.619 45.17 34.19 44.52 3.13
2064 2215 2.225727 AGTCAGTTTCGGCCGAAATTTC 59.774 45.455 45.17 34.25 44.52 2.17
2065 2216 2.227194 AGTCAGTTTCGGCCGAAATTT 58.773 42.857 45.17 34.85 44.52 1.82
2066 2217 1.892209 AGTCAGTTTCGGCCGAAATT 58.108 45.000 45.17 40.00 44.52 1.82
2067 2218 1.804748 GAAGTCAGTTTCGGCCGAAAT 59.195 47.619 45.17 32.59 44.52 2.17
2068 2219 1.202604 AGAAGTCAGTTTCGGCCGAAA 60.203 47.619 41.63 41.63 41.22 3.46
2069 2220 0.391597 AGAAGTCAGTTTCGGCCGAA 59.608 50.000 35.81 35.81 32.33 4.30
2070 2221 0.038526 GAGAAGTCAGTTTCGGCCGA 60.039 55.000 27.28 27.28 32.33 5.54
2071 2222 1.344942 CGAGAAGTCAGTTTCGGCCG 61.345 60.000 22.12 22.12 32.33 6.13
2072 2223 0.319641 ACGAGAAGTCAGTTTCGGCC 60.320 55.000 0.00 0.00 37.38 6.13
2073 2224 2.342910 TACGAGAAGTCAGTTTCGGC 57.657 50.000 0.00 0.00 37.38 5.54
2074 2225 3.057736 TCCTTACGAGAAGTCAGTTTCGG 60.058 47.826 0.00 0.00 37.38 4.30
2075 2226 4.156664 TCCTTACGAGAAGTCAGTTTCG 57.843 45.455 0.00 0.00 38.88 3.46
2076 2227 5.710984 TCATCCTTACGAGAAGTCAGTTTC 58.289 41.667 0.00 0.00 0.00 2.78
2077 2228 5.723672 TCATCCTTACGAGAAGTCAGTTT 57.276 39.130 0.00 0.00 0.00 2.66
2078 2229 5.419155 TCATCATCCTTACGAGAAGTCAGTT 59.581 40.000 0.00 0.00 0.00 3.16
2079 2230 4.950475 TCATCATCCTTACGAGAAGTCAGT 59.050 41.667 0.00 0.00 0.00 3.41
2080 2231 5.506686 TCATCATCCTTACGAGAAGTCAG 57.493 43.478 0.00 0.00 0.00 3.51
2081 2232 5.914898 TTCATCATCCTTACGAGAAGTCA 57.085 39.130 0.00 0.00 0.00 3.41
2082 2233 6.334202 AGTTTCATCATCCTTACGAGAAGTC 58.666 40.000 0.00 0.00 0.00 3.01
2083 2234 6.287589 AGTTTCATCATCCTTACGAGAAGT 57.712 37.500 0.00 0.00 0.00 3.01
2084 2235 6.036517 CCAAGTTTCATCATCCTTACGAGAAG 59.963 42.308 0.00 0.00 0.00 2.85
2085 2236 5.874810 CCAAGTTTCATCATCCTTACGAGAA 59.125 40.000 0.00 0.00 0.00 2.87
2086 2237 5.186992 TCCAAGTTTCATCATCCTTACGAGA 59.813 40.000 0.00 0.00 0.00 4.04
2087 2238 5.419542 TCCAAGTTTCATCATCCTTACGAG 58.580 41.667 0.00 0.00 0.00 4.18
2088 2239 5.414789 TCCAAGTTTCATCATCCTTACGA 57.585 39.130 0.00 0.00 0.00 3.43
2089 2240 5.643777 ACTTCCAAGTTTCATCATCCTTACG 59.356 40.000 0.00 0.00 35.21 3.18
2090 2241 6.881602 AGACTTCCAAGTTTCATCATCCTTAC 59.118 38.462 0.00 0.00 39.88 2.34
2091 2242 6.881065 CAGACTTCCAAGTTTCATCATCCTTA 59.119 38.462 0.00 0.00 39.88 2.69
2092 2243 5.709164 CAGACTTCCAAGTTTCATCATCCTT 59.291 40.000 0.00 0.00 39.88 3.36
2093 2244 5.013495 TCAGACTTCCAAGTTTCATCATCCT 59.987 40.000 0.00 0.00 39.88 3.24
2094 2245 5.248640 TCAGACTTCCAAGTTTCATCATCC 58.751 41.667 0.00 0.00 39.88 3.51
2095 2246 6.205464 TGTTCAGACTTCCAAGTTTCATCATC 59.795 38.462 0.00 0.00 39.88 2.92
2096 2247 6.064060 TGTTCAGACTTCCAAGTTTCATCAT 58.936 36.000 0.00 0.00 39.88 2.45
2097 2248 5.436175 TGTTCAGACTTCCAAGTTTCATCA 58.564 37.500 0.00 0.00 39.88 3.07
2098 2249 6.377327 TTGTTCAGACTTCCAAGTTTCATC 57.623 37.500 0.00 0.00 39.88 2.92
2099 2250 6.966534 ATTGTTCAGACTTCCAAGTTTCAT 57.033 33.333 0.00 0.00 39.88 2.57
2100 2251 6.376864 TGAATTGTTCAGACTTCCAAGTTTCA 59.623 34.615 0.00 0.00 35.39 2.69
2101 2252 6.795399 TGAATTGTTCAGACTTCCAAGTTTC 58.205 36.000 0.00 0.00 35.39 2.78
2102 2253 6.773976 TGAATTGTTCAGACTTCCAAGTTT 57.226 33.333 0.00 0.00 35.39 2.66
2103 2254 6.773976 TTGAATTGTTCAGACTTCCAAGTT 57.226 33.333 0.00 0.00 41.38 2.66
2104 2255 6.547141 TGATTGAATTGTTCAGACTTCCAAGT 59.453 34.615 0.00 0.00 41.38 3.16
2105 2256 6.973843 TGATTGAATTGTTCAGACTTCCAAG 58.026 36.000 0.00 0.00 41.38 3.61
2106 2257 6.957920 TGATTGAATTGTTCAGACTTCCAA 57.042 33.333 0.00 0.00 41.38 3.53
2107 2258 6.957920 TTGATTGAATTGTTCAGACTTCCA 57.042 33.333 0.00 0.00 41.38 3.53
2108 2259 8.706035 CAAATTGATTGAATTGTTCAGACTTCC 58.294 33.333 0.00 0.00 41.85 3.46
2109 2260 9.467258 TCAAATTGATTGAATTGTTCAGACTTC 57.533 29.630 0.00 0.00 44.94 3.01
2139 2291 5.322754 TGTTTCTAGTAGTGCTGTCTAGGT 58.677 41.667 0.00 0.00 33.96 3.08
2140 2292 5.899120 TGTTTCTAGTAGTGCTGTCTAGG 57.101 43.478 0.00 0.00 33.96 3.02
2146 2298 4.383052 CACGTCTTGTTTCTAGTAGTGCTG 59.617 45.833 0.00 0.00 0.00 4.41
2147 2299 4.037684 ACACGTCTTGTTTCTAGTAGTGCT 59.962 41.667 0.00 0.00 33.09 4.40
2174 2327 2.241880 CGGTCGTTTTCTGCGTGGT 61.242 57.895 0.00 0.00 0.00 4.16
2179 2332 2.251371 GGTGCGGTCGTTTTCTGC 59.749 61.111 0.00 0.00 37.66 4.26
2212 2365 9.557061 GGTCCGAAGTTTCCTATATATTTCTTT 57.443 33.333 0.00 0.00 0.00 2.52
2215 2368 7.541437 CGAGGTCCGAAGTTTCCTATATATTTC 59.459 40.741 0.00 0.00 41.76 2.17
2219 2372 4.763793 CCGAGGTCCGAAGTTTCCTATATA 59.236 45.833 0.00 0.00 41.76 0.86
2223 2376 1.180029 CCGAGGTCCGAAGTTTCCTA 58.820 55.000 0.00 0.00 41.76 2.94
2239 2392 2.177394 TTGTGCTGTCAAATAGCCGA 57.823 45.000 0.00 0.00 40.42 5.54
2240 2393 2.226437 ACTTTGTGCTGTCAAATAGCCG 59.774 45.455 0.00 0.00 40.42 5.52
2241 2394 3.923017 ACTTTGTGCTGTCAAATAGCC 57.077 42.857 0.00 0.00 40.42 3.93
2242 2395 4.676924 GTCAACTTTGTGCTGTCAAATAGC 59.323 41.667 0.00 0.00 41.49 2.97
2244 2397 5.221028 CCAGTCAACTTTGTGCTGTCAAATA 60.221 40.000 12.02 0.00 36.83 1.40
2247 2400 2.423185 CCAGTCAACTTTGTGCTGTCAA 59.577 45.455 12.02 0.00 33.73 3.18
2248 2401 2.016318 CCAGTCAACTTTGTGCTGTCA 58.984 47.619 12.02 0.00 33.73 3.58
2249 2402 2.017049 ACCAGTCAACTTTGTGCTGTC 58.983 47.619 12.02 0.00 33.73 3.51
2289 2442 1.753073 GAGGTCCCTGATTTGCCATTG 59.247 52.381 0.00 0.00 0.00 2.82
2313 2466 3.379057 TCCATGCATGCTACTGTCAAATG 59.621 43.478 21.69 10.31 0.00 2.32
2323 2476 2.092267 AGTTCCATGTCCATGCATGCTA 60.092 45.455 21.69 8.51 43.46 3.49
2328 2481 3.229293 TGAAAAGTTCCATGTCCATGCA 58.771 40.909 1.64 0.00 37.49 3.96
2439 2619 0.782384 CTGTACACTTCCGCGTTCAC 59.218 55.000 4.92 0.00 0.00 3.18
2455 2635 6.174720 TCAATTTCTGTACCTCTTGTCTGT 57.825 37.500 0.00 0.00 0.00 3.41
2504 2696 6.042777 CGCAGTACTCCTGATTAAAGATCAA 58.957 40.000 0.00 0.00 44.49 2.57
2561 2753 4.389077 GGATGTAGACAGGACGTTTTTCTG 59.611 45.833 0.00 0.00 34.91 3.02
2564 2756 4.345859 TGGATGTAGACAGGACGTTTTT 57.654 40.909 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.