Multiple sequence alignment - TraesCS1A01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G177900 chr1A 100.000 2913 0 0 1 2913 321227079 321229991 0.000000e+00 5380.0
1 TraesCS1A01G177900 chr1A 95.522 268 12 0 393 660 321278830 321279097 2.070000e-116 429.0
2 TraesCS1A01G177900 chr1A 93.633 267 14 3 395 660 64426427 64426691 2.100000e-106 396.0
3 TraesCS1A01G177900 chr1A 95.261 211 10 0 661 871 321246733 321246523 4.650000e-88 335.0
4 TraesCS1A01G177900 chr2D 95.161 1612 56 3 660 2269 623475643 623477234 0.000000e+00 2525.0
5 TraesCS1A01G177900 chr2D 94.127 1277 50 4 679 1953 427097813 427096560 0.000000e+00 1919.0
6 TraesCS1A01G177900 chr2D 96.639 238 8 0 2032 2269 427096565 427096328 2.100000e-106 396.0
7 TraesCS1A01G177900 chr2D 93.269 208 13 1 664 871 623477539 623477333 3.650000e-79 305.0
8 TraesCS1A01G177900 chr2D 91.204 216 17 2 656 871 427092510 427092723 2.840000e-75 292.0
9 TraesCS1A01G177900 chr2D 97.436 39 1 0 2140 2178 584528172 584528210 1.870000e-07 67.6
10 TraesCS1A01G177900 chr1D 94.894 1273 44 2 661 1932 405376659 405377911 0.000000e+00 1971.0
11 TraesCS1A01G177900 chr1D 91.919 198 15 1 672 869 405378194 405377998 2.860000e-70 276.0
12 TraesCS1A01G177900 chr4A 97.338 601 16 0 2313 2913 478043537 478042937 0.000000e+00 1022.0
13 TraesCS1A01G177900 chr4A 96.844 602 18 1 2313 2913 65983688 65984289 0.000000e+00 1005.0
14 TraesCS1A01G177900 chr4A 91.418 268 21 2 393 660 305926822 305926557 1.650000e-97 366.0
15 TraesCS1A01G177900 chr4A 89.333 75 4 4 2246 2320 332592674 332592744 1.110000e-14 91.6
16 TraesCS1A01G177900 chr5A 97.342 602 12 2 2313 2913 657788022 657788620 0.000000e+00 1020.0
17 TraesCS1A01G177900 chr5A 97.176 602 15 2 2313 2913 127718600 127718000 0.000000e+00 1016.0
18 TraesCS1A01G177900 chr5A 97.171 601 15 1 2313 2913 332641251 332640653 0.000000e+00 1014.0
19 TraesCS1A01G177900 chr5A 97.171 601 14 1 2313 2913 362535704 362536301 0.000000e+00 1013.0
20 TraesCS1A01G177900 chr5A 97.005 601 17 1 2314 2913 96964185 96964785 0.000000e+00 1009.0
21 TraesCS1A01G177900 chr5A 91.624 394 31 2 1 392 643863149 643862756 7.100000e-151 544.0
22 TraesCS1A01G177900 chr5A 92.537 268 18 2 393 660 242956149 242955884 1.640000e-102 383.0
23 TraesCS1A01G177900 chr5A 95.082 61 1 2 2261 2320 510116885 510116944 8.590000e-16 95.3
24 TraesCS1A01G177900 chr5A 88.158 76 3 5 2247 2320 283415609 283415680 5.170000e-13 86.1
25 TraesCS1A01G177900 chr2A 96.844 602 17 2 2313 2913 586177932 586178532 0.000000e+00 1005.0
26 TraesCS1A01G177900 chr2A 96.689 604 17 2 2310 2913 38702795 38703395 0.000000e+00 1002.0
27 TraesCS1A01G177900 chr2A 92.193 269 20 1 393 660 354177899 354177631 2.120000e-101 379.0
28 TraesCS1A01G177900 chr2A 93.651 63 2 2 2259 2320 533394455 533394394 3.090000e-15 93.5
29 TraesCS1A01G177900 chr5D 92.640 394 27 2 1 392 475905930 475905537 1.520000e-157 566.0
30 TraesCS1A01G177900 chr5D 91.624 394 30 3 1 392 443076302 443076694 2.550000e-150 542.0
31 TraesCS1A01G177900 chr4D 92.621 393 28 1 1 392 374108549 374108941 5.450000e-157 564.0
32 TraesCS1A01G177900 chr4D 92.112 393 29 2 2 392 477755194 477754802 1.180000e-153 553.0
33 TraesCS1A01G177900 chr4D 91.816 391 30 2 1 390 133483154 133483543 7.100000e-151 544.0
34 TraesCS1A01G177900 chr4D 100.000 35 0 0 2144 2178 506203520 506203554 6.740000e-07 65.8
35 TraesCS1A01G177900 chr6D 92.132 394 29 2 1 392 317841961 317841568 3.280000e-154 555.0
36 TraesCS1A01G177900 chr6D 91.667 396 29 2 1 392 407205432 407205827 1.970000e-151 545.0
37 TraesCS1A01G177900 chr6D 96.552 58 1 1 2263 2320 419637234 419637290 8.590000e-16 95.3
38 TraesCS1A01G177900 chr6D 100.000 36 0 0 2143 2178 2065650 2065615 1.870000e-07 67.6
39 TraesCS1A01G177900 chr6D 97.368 38 1 0 2141 2178 62116132 62116169 6.740000e-07 65.8
40 TraesCS1A01G177900 chr6D 97.143 35 1 0 2144 2178 401201547 401201581 3.130000e-05 60.2
41 TraesCS1A01G177900 chr6D 100.000 28 0 0 2144 2171 354422697 354422724 5.000000e-03 52.8
42 TraesCS1A01G177900 chr6A 91.624 394 31 2 1 392 13392679 13392286 7.100000e-151 544.0
43 TraesCS1A01G177900 chr6A 92.937 269 18 1 393 660 266105770 266105502 9.790000e-105 390.0
44 TraesCS1A01G177900 chr6A 92.647 272 19 1 390 660 282539112 282539383 9.790000e-105 390.0
45 TraesCS1A01G177900 chr6A 93.651 63 2 2 2259 2320 28615522 28615461 3.090000e-15 93.5
46 TraesCS1A01G177900 chr7D 93.284 268 17 1 393 660 574687656 574687390 7.570000e-106 394.0
47 TraesCS1A01G177900 chr7D 91.667 48 3 1 2132 2178 120722349 120722302 6.740000e-07 65.8
48 TraesCS1A01G177900 chr3A 92.193 269 20 1 393 660 321949925 321950193 2.120000e-101 379.0
49 TraesCS1A01G177900 chr5B 92.623 244 18 0 664 907 639227719 639227476 4.620000e-93 351.0
50 TraesCS1A01G177900 chr5B 91.388 209 17 1 661 869 639225177 639225384 4.750000e-73 285.0
51 TraesCS1A01G177900 chr5B 92.793 111 8 0 2159 2269 639227478 639227368 8.350000e-36 161.0
52 TraesCS1A01G177900 chr3B 96.429 56 1 1 2265 2320 82197214 82197160 1.110000e-14 91.6
53 TraesCS1A01G177900 chr7B 91.045 67 4 2 2255 2320 377034988 377035053 4.000000e-14 89.8
54 TraesCS1A01G177900 chr7A 93.333 60 3 1 2261 2320 444656585 444656527 1.440000e-13 87.9
55 TraesCS1A01G177900 chr3D 100.000 36 0 0 2143 2178 339862288 339862253 1.870000e-07 67.6
56 TraesCS1A01G177900 chrUn 100.000 35 0 0 2144 2178 346709942 346709908 6.740000e-07 65.8
57 TraesCS1A01G177900 chrUn 100.000 35 0 0 2144 2178 373706545 373706579 6.740000e-07 65.8
58 TraesCS1A01G177900 chrUn 100.000 35 0 0 2144 2178 373708411 373708445 6.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G177900 chr1A 321227079 321229991 2912 False 5380.0 5380 100.000 1 2913 1 chr1A.!!$F2 2912
1 TraesCS1A01G177900 chr2D 623475643 623477234 1591 False 2525.0 2525 95.161 660 2269 1 chr2D.!!$F3 1609
2 TraesCS1A01G177900 chr2D 427096328 427097813 1485 True 1157.5 1919 95.383 679 2269 2 chr2D.!!$R2 1590
3 TraesCS1A01G177900 chr1D 405376659 405377911 1252 False 1971.0 1971 94.894 661 1932 1 chr1D.!!$F1 1271
4 TraesCS1A01G177900 chr4A 478042937 478043537 600 True 1022.0 1022 97.338 2313 2913 1 chr4A.!!$R2 600
5 TraesCS1A01G177900 chr4A 65983688 65984289 601 False 1005.0 1005 96.844 2313 2913 1 chr4A.!!$F1 600
6 TraesCS1A01G177900 chr5A 657788022 657788620 598 False 1020.0 1020 97.342 2313 2913 1 chr5A.!!$F5 600
7 TraesCS1A01G177900 chr5A 127718000 127718600 600 True 1016.0 1016 97.176 2313 2913 1 chr5A.!!$R1 600
8 TraesCS1A01G177900 chr5A 332640653 332641251 598 True 1014.0 1014 97.171 2313 2913 1 chr5A.!!$R3 600
9 TraesCS1A01G177900 chr5A 362535704 362536301 597 False 1013.0 1013 97.171 2313 2913 1 chr5A.!!$F3 600
10 TraesCS1A01G177900 chr5A 96964185 96964785 600 False 1009.0 1009 97.005 2314 2913 1 chr5A.!!$F1 599
11 TraesCS1A01G177900 chr2A 586177932 586178532 600 False 1005.0 1005 96.844 2313 2913 1 chr2A.!!$F2 600
12 TraesCS1A01G177900 chr2A 38702795 38703395 600 False 1002.0 1002 96.689 2310 2913 1 chr2A.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.037303 CAACATGACCAGGCTGGAGT 59.963 55.0 38.99 25.67 40.96 3.85 F
467 468 0.039074 AAGAGCACGGAGAACACGAG 60.039 55.0 0.00 0.00 34.93 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1763 0.798776 GATCCTCAACACCTTGTGCG 59.201 55.0 0.00 0.00 36.98 5.34 R
2281 2284 0.178885 ACCAACTAGGGGTGGCACTA 60.179 55.0 18.45 0.98 43.89 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.152964 GGGCCGAGGTACGTTCCC 62.153 72.222 7.70 1.45 42.33 3.97
18 19 4.503314 GGCCGAGGTACGTTCCCG 62.503 72.222 7.70 10.77 40.78 5.14
19 20 3.443045 GCCGAGGTACGTTCCCGA 61.443 66.667 18.67 0.00 40.78 5.14
20 21 2.486966 CCGAGGTACGTTCCCGAC 59.513 66.667 18.67 7.00 40.78 4.79
21 22 2.334946 CCGAGGTACGTTCCCGACA 61.335 63.158 18.67 0.00 40.78 4.35
22 23 1.136147 CGAGGTACGTTCCCGACAG 59.864 63.158 7.70 0.00 37.88 3.51
23 24 1.153881 GAGGTACGTTCCCGACAGC 60.154 63.158 7.70 0.00 37.88 4.40
24 25 2.125793 GGTACGTTCCCGACAGCC 60.126 66.667 0.00 0.00 37.88 4.85
25 26 2.125793 GTACGTTCCCGACAGCCC 60.126 66.667 0.00 0.00 37.88 5.19
26 27 3.751246 TACGTTCCCGACAGCCCG 61.751 66.667 0.00 0.00 37.88 6.13
45 46 3.842869 CTGTGGGAGCAGTACTTCC 57.157 57.895 5.17 5.17 45.76 3.46
49 50 1.139095 GGGAGCAGTACTTCCGTCG 59.861 63.158 7.39 0.00 32.95 5.12
50 51 1.516603 GGAGCAGTACTTCCGTCGC 60.517 63.158 0.00 0.00 0.00 5.19
51 52 1.507174 GAGCAGTACTTCCGTCGCT 59.493 57.895 3.00 3.00 0.00 4.93
52 53 0.798771 GAGCAGTACTTCCGTCGCTG 60.799 60.000 7.78 0.00 32.69 5.18
53 54 2.445438 GCAGTACTTCCGTCGCTGC 61.445 63.158 0.00 4.84 41.54 5.25
54 55 1.805945 CAGTACTTCCGTCGCTGCC 60.806 63.158 0.00 0.00 0.00 4.85
55 56 2.260434 GTACTTCCGTCGCTGCCA 59.740 61.111 0.00 0.00 0.00 4.92
56 57 2.092882 GTACTTCCGTCGCTGCCAC 61.093 63.158 0.00 0.00 0.00 5.01
57 58 2.566570 TACTTCCGTCGCTGCCACA 61.567 57.895 0.00 0.00 0.00 4.17
58 59 2.758770 TACTTCCGTCGCTGCCACAC 62.759 60.000 0.00 0.00 0.00 3.82
59 60 4.980805 TTCCGTCGCTGCCACACC 62.981 66.667 0.00 0.00 0.00 4.16
68 69 4.687215 TGCCACACCGAGCAGCTC 62.687 66.667 12.94 12.94 33.08 4.09
77 78 2.415426 GAGCAGCTCGAGCCTACC 59.585 66.667 32.94 18.28 43.38 3.18
78 79 2.363018 AGCAGCTCGAGCCTACCA 60.363 61.111 32.94 0.00 43.38 3.25
79 80 1.949847 GAGCAGCTCGAGCCTACCAA 61.950 60.000 32.94 0.00 43.38 3.67
80 81 1.811679 GCAGCTCGAGCCTACCAAC 60.812 63.158 32.94 11.45 43.38 3.77
81 82 1.517257 CAGCTCGAGCCTACCAACG 60.517 63.158 32.94 8.36 43.38 4.10
82 83 1.677966 AGCTCGAGCCTACCAACGA 60.678 57.895 32.94 0.00 43.38 3.85
83 84 1.516603 GCTCGAGCCTACCAACGAC 60.517 63.158 27.22 0.00 34.31 4.34
84 85 1.226323 CTCGAGCCTACCAACGACG 60.226 63.158 0.00 0.00 0.00 5.12
85 86 1.919956 CTCGAGCCTACCAACGACGT 61.920 60.000 0.00 0.00 0.00 4.34
86 87 1.513586 CGAGCCTACCAACGACGTC 60.514 63.158 5.18 5.18 0.00 4.34
87 88 1.513586 GAGCCTACCAACGACGTCG 60.514 63.158 34.58 34.58 46.33 5.12
100 101 4.796231 CGTCGTGCCCTCCGGAAG 62.796 72.222 5.23 0.00 0.00 3.46
112 113 2.970639 CGGAAGGCTCAACTCCGA 59.029 61.111 18.23 0.00 45.77 4.55
113 114 1.446272 CGGAAGGCTCAACTCCGAC 60.446 63.158 18.23 0.00 45.77 4.79
114 115 1.446272 GGAAGGCTCAACTCCGACG 60.446 63.158 0.00 0.00 0.00 5.12
115 116 1.446272 GAAGGCTCAACTCCGACGG 60.446 63.158 7.84 7.84 0.00 4.79
116 117 3.591254 AAGGCTCAACTCCGACGGC 62.591 63.158 9.66 0.00 0.00 5.68
135 136 4.891727 GCCGTCGATGATGGGCGT 62.892 66.667 6.11 0.00 39.01 5.68
136 137 2.961721 CCGTCGATGATGGGCGTG 60.962 66.667 6.11 0.00 35.25 5.34
137 138 3.630148 CGTCGATGATGGGCGTGC 61.630 66.667 0.00 0.00 0.00 5.34
138 139 3.272334 GTCGATGATGGGCGTGCC 61.272 66.667 1.16 1.16 0.00 5.01
171 172 3.877951 AGGTCGTCCTCGAGTACAT 57.122 52.632 12.31 0.00 46.96 2.29
172 173 1.666054 AGGTCGTCCTCGAGTACATC 58.334 55.000 12.31 1.53 46.96 3.06
181 182 2.027751 GAGTACATCGAGGGCGGC 59.972 66.667 0.00 0.00 38.28 6.53
182 183 2.758327 AGTACATCGAGGGCGGCA 60.758 61.111 12.47 0.00 38.28 5.69
183 184 2.185867 GTACATCGAGGGCGGCAA 59.814 61.111 12.47 0.00 38.28 4.52
184 185 2.171725 GTACATCGAGGGCGGCAAC 61.172 63.158 12.47 2.63 38.28 4.17
185 186 2.651105 TACATCGAGGGCGGCAACA 61.651 57.895 12.47 0.00 38.28 3.33
186 187 1.966901 TACATCGAGGGCGGCAACAT 61.967 55.000 12.47 0.00 38.28 2.71
187 188 2.514592 ATCGAGGGCGGCAACATG 60.515 61.111 12.47 0.00 38.28 3.21
188 189 3.030168 ATCGAGGGCGGCAACATGA 62.030 57.895 12.47 0.85 38.28 3.07
189 190 3.499737 CGAGGGCGGCAACATGAC 61.500 66.667 12.47 0.00 0.00 3.06
190 191 3.134127 GAGGGCGGCAACATGACC 61.134 66.667 12.47 0.00 0.00 4.02
191 192 3.918253 GAGGGCGGCAACATGACCA 62.918 63.158 12.47 0.00 0.00 4.02
192 193 3.443045 GGGCGGCAACATGACCAG 61.443 66.667 12.47 0.00 0.00 4.00
193 194 3.443045 GGCGGCAACATGACCAGG 61.443 66.667 3.07 0.00 0.00 4.45
194 195 4.120331 GCGGCAACATGACCAGGC 62.120 66.667 0.00 0.00 0.00 4.85
195 196 2.360350 CGGCAACATGACCAGGCT 60.360 61.111 0.00 0.00 0.00 4.58
196 197 2.693762 CGGCAACATGACCAGGCTG 61.694 63.158 7.75 7.75 0.00 4.85
197 198 2.345760 GGCAACATGACCAGGCTGG 61.346 63.158 31.62 31.62 45.02 4.85
198 199 1.303561 GCAACATGACCAGGCTGGA 60.304 57.895 38.99 19.28 40.96 3.86
199 200 1.310933 GCAACATGACCAGGCTGGAG 61.311 60.000 38.99 25.06 40.96 3.86
200 201 0.037303 CAACATGACCAGGCTGGAGT 59.963 55.000 38.99 25.67 40.96 3.85
201 202 1.278985 CAACATGACCAGGCTGGAGTA 59.721 52.381 38.99 23.34 40.96 2.59
202 203 0.905357 ACATGACCAGGCTGGAGTAC 59.095 55.000 38.99 24.28 40.96 2.73
203 204 0.179000 CATGACCAGGCTGGAGTACC 59.821 60.000 38.99 20.61 40.96 3.34
204 205 0.983378 ATGACCAGGCTGGAGTACCC 60.983 60.000 38.99 19.01 40.96 3.69
205 206 2.285442 ACCAGGCTGGAGTACCCC 60.285 66.667 38.99 0.00 40.96 4.95
206 207 3.470888 CCAGGCTGGAGTACCCCG 61.471 72.222 29.96 0.00 40.96 5.73
207 208 4.162690 CAGGCTGGAGTACCCCGC 62.163 72.222 6.61 7.84 43.54 6.13
208 209 4.400251 AGGCTGGAGTACCCCGCT 62.400 66.667 13.60 1.96 43.73 5.52
209 210 3.851128 GGCTGGAGTACCCCGCTC 61.851 72.222 13.60 0.00 43.73 5.03
214 215 4.477119 GAGTACCCCGCTCCCCCT 62.477 72.222 0.00 0.00 0.00 4.79
215 216 4.477119 AGTACCCCGCTCCCCCTC 62.477 72.222 0.00 0.00 0.00 4.30
220 221 4.806339 CCCGCTCCCCCTCCTTCT 62.806 72.222 0.00 0.00 0.00 2.85
221 222 3.157949 CCGCTCCCCCTCCTTCTC 61.158 72.222 0.00 0.00 0.00 2.87
222 223 3.157949 CGCTCCCCCTCCTTCTCC 61.158 72.222 0.00 0.00 0.00 3.71
223 224 2.770475 GCTCCCCCTCCTTCTCCC 60.770 72.222 0.00 0.00 0.00 4.30
224 225 2.444895 CTCCCCCTCCTTCTCCCG 60.445 72.222 0.00 0.00 0.00 5.14
225 226 4.798682 TCCCCCTCCTTCTCCCGC 62.799 72.222 0.00 0.00 0.00 6.13
246 247 4.778415 CGTGGGAGCTCGTGGACG 62.778 72.222 7.83 9.12 41.45 4.79
257 258 4.796231 GTGGACGCCGAGACGCAT 62.796 66.667 0.00 0.00 36.19 4.73
258 259 4.794439 TGGACGCCGAGACGCATG 62.794 66.667 0.00 0.00 36.19 4.06
260 261 4.492160 GACGCCGAGACGCATGGA 62.492 66.667 0.00 0.00 36.19 3.41
261 262 4.796231 ACGCCGAGACGCATGGAC 62.796 66.667 0.00 0.00 36.19 4.02
264 265 4.873129 CCGAGACGCATGGACCCG 62.873 72.222 0.00 0.00 0.00 5.28
265 266 4.873129 CGAGACGCATGGACCCGG 62.873 72.222 0.00 0.00 0.00 5.73
268 269 4.856801 GACGCATGGACCCGGCAT 62.857 66.667 0.00 0.00 31.50 4.40
269 270 4.856801 ACGCATGGACCCGGCATC 62.857 66.667 0.00 0.00 0.00 3.91
271 272 4.195334 GCATGGACCCGGCATCCT 62.195 66.667 20.35 6.78 37.13 3.24
272 273 2.111878 CATGGACCCGGCATCCTC 59.888 66.667 20.35 0.00 37.13 3.71
273 274 3.171388 ATGGACCCGGCATCCTCC 61.171 66.667 20.35 8.49 37.13 4.30
274 275 3.721172 ATGGACCCGGCATCCTCCT 62.721 63.158 20.35 6.15 37.13 3.69
275 276 3.551407 GGACCCGGCATCCTCCTC 61.551 72.222 14.29 0.00 33.03 3.71
276 277 3.551407 GACCCGGCATCCTCCTCC 61.551 72.222 0.00 0.00 0.00 4.30
277 278 4.095400 ACCCGGCATCCTCCTCCT 62.095 66.667 0.00 0.00 0.00 3.69
278 279 3.237741 CCCGGCATCCTCCTCCTC 61.238 72.222 0.00 0.00 0.00 3.71
279 280 3.610669 CCGGCATCCTCCTCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
280 281 2.835431 CGGCATCCTCCTCCTCGT 60.835 66.667 0.00 0.00 0.00 4.18
281 282 2.851071 CGGCATCCTCCTCCTCGTC 61.851 68.421 0.00 0.00 0.00 4.20
282 283 2.503382 GGCATCCTCCTCCTCGTCC 61.503 68.421 0.00 0.00 0.00 4.79
283 284 1.758514 GCATCCTCCTCCTCGTCCA 60.759 63.158 0.00 0.00 0.00 4.02
284 285 1.743321 GCATCCTCCTCCTCGTCCAG 61.743 65.000 0.00 0.00 0.00 3.86
285 286 1.456705 ATCCTCCTCCTCGTCCAGC 60.457 63.158 0.00 0.00 0.00 4.85
286 287 2.937959 ATCCTCCTCCTCGTCCAGCC 62.938 65.000 0.00 0.00 0.00 4.85
287 288 3.522731 CTCCTCCTCGTCCAGCCG 61.523 72.222 0.00 0.00 0.00 5.52
290 291 4.200283 CTCCTCGTCCAGCCGCTC 62.200 72.222 0.00 0.00 0.00 5.03
293 294 4.838486 CTCGTCCAGCCGCTCGTC 62.838 72.222 0.00 0.00 0.00 4.20
305 306 3.213402 CTCGTCCGGCTCTCCCTC 61.213 72.222 0.00 0.00 0.00 4.30
306 307 4.816984 TCGTCCGGCTCTCCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
308 309 4.467107 GTCCGGCTCTCCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
309 310 4.144727 TCCGGCTCTCCCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
311 312 4.150454 CGGCTCTCCCTCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
312 313 2.123033 GGCTCTCCCTCCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
313 314 2.123033 GCTCTCCCTCCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
314 315 2.612251 CTCTCCCTCCCTCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
315 316 3.036959 TCTCCCTCCCTCCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
316 317 4.548513 CTCCCTCCCTCCTCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
318 319 4.862823 CCCTCCCTCCTCCCCGTC 62.863 77.778 0.00 0.00 0.00 4.79
319 320 4.075793 CCTCCCTCCTCCCCGTCA 62.076 72.222 0.00 0.00 0.00 4.35
320 321 2.038975 CTCCCTCCTCCCCGTCAA 59.961 66.667 0.00 0.00 0.00 3.18
321 322 2.038975 TCCCTCCTCCCCGTCAAG 59.961 66.667 0.00 0.00 0.00 3.02
322 323 3.787001 CCCTCCTCCCCGTCAAGC 61.787 72.222 0.00 0.00 0.00 4.01
323 324 2.685380 CCTCCTCCCCGTCAAGCT 60.685 66.667 0.00 0.00 0.00 3.74
324 325 2.581354 CTCCTCCCCGTCAAGCTG 59.419 66.667 0.00 0.00 0.00 4.24
325 326 3.003173 TCCTCCCCGTCAAGCTGG 61.003 66.667 0.00 0.00 0.00 4.85
326 327 3.003173 CCTCCCCGTCAAGCTGGA 61.003 66.667 0.00 0.00 0.00 3.86
327 328 2.581354 CTCCCCGTCAAGCTGGAG 59.419 66.667 0.00 0.00 38.56 3.86
328 329 3.672295 CTCCCCGTCAAGCTGGAGC 62.672 68.421 2.83 0.00 38.12 4.70
329 330 4.785453 CCCCGTCAAGCTGGAGCC 62.785 72.222 0.00 0.00 43.38 4.70
330 331 4.785453 CCCGTCAAGCTGGAGCCC 62.785 72.222 0.00 0.00 43.38 5.19
331 332 4.785453 CCGTCAAGCTGGAGCCCC 62.785 72.222 0.00 0.00 43.38 5.80
332 333 4.020617 CGTCAAGCTGGAGCCCCA 62.021 66.667 0.00 0.00 43.38 4.96
333 334 2.436109 GTCAAGCTGGAGCCCCAA 59.564 61.111 0.00 0.00 42.98 4.12
334 335 1.676967 GTCAAGCTGGAGCCCCAAG 60.677 63.158 0.00 0.00 42.98 3.61
335 336 1.847506 TCAAGCTGGAGCCCCAAGA 60.848 57.895 0.00 0.00 42.98 3.02
336 337 1.676967 CAAGCTGGAGCCCCAAGAC 60.677 63.158 0.00 0.00 42.98 3.01
337 338 3.259633 AAGCTGGAGCCCCAAGACG 62.260 63.158 0.00 0.00 42.98 4.18
346 347 4.812476 CCCAAGACGCGCCGATCA 62.812 66.667 5.73 0.00 0.00 2.92
347 348 3.257561 CCAAGACGCGCCGATCAG 61.258 66.667 5.73 0.00 0.00 2.90
348 349 3.918220 CAAGACGCGCCGATCAGC 61.918 66.667 5.73 0.00 0.00 4.26
377 378 2.125229 CAGCTCTGGCGTCTGCAT 60.125 61.111 0.00 0.00 45.35 3.96
378 379 2.172372 CAGCTCTGGCGTCTGCATC 61.172 63.158 0.00 0.00 45.35 3.91
379 380 3.260483 GCTCTGGCGTCTGCATCG 61.260 66.667 7.00 7.00 45.35 3.84
386 387 2.951745 CGTCTGCATCGCCGACTC 60.952 66.667 8.55 0.00 39.88 3.36
387 388 2.583593 GTCTGCATCGCCGACTCC 60.584 66.667 0.00 0.00 39.17 3.85
388 389 2.755876 TCTGCATCGCCGACTCCT 60.756 61.111 0.00 0.00 0.00 3.69
389 390 2.279120 CTGCATCGCCGACTCCTC 60.279 66.667 0.00 0.00 0.00 3.71
390 391 3.781770 CTGCATCGCCGACTCCTCC 62.782 68.421 0.00 0.00 0.00 4.30
391 392 4.593864 GCATCGCCGACTCCTCCC 62.594 72.222 0.00 0.00 0.00 4.30
392 393 2.835431 CATCGCCGACTCCTCCCT 60.835 66.667 0.00 0.00 0.00 4.20
393 394 2.835431 ATCGCCGACTCCTCCCTG 60.835 66.667 0.00 0.00 0.00 4.45
394 395 3.360423 ATCGCCGACTCCTCCCTGA 62.360 63.158 0.00 0.00 0.00 3.86
395 396 2.648613 ATCGCCGACTCCTCCCTGAT 62.649 60.000 0.00 0.00 0.00 2.90
396 397 2.818132 GCCGACTCCTCCCTGATG 59.182 66.667 0.00 0.00 0.00 3.07
397 398 2.060980 GCCGACTCCTCCCTGATGT 61.061 63.158 0.00 0.00 0.00 3.06
398 399 0.755698 GCCGACTCCTCCCTGATGTA 60.756 60.000 0.00 0.00 0.00 2.29
399 400 1.323412 CCGACTCCTCCCTGATGTAG 58.677 60.000 0.00 0.00 0.00 2.74
400 401 1.323412 CGACTCCTCCCTGATGTAGG 58.677 60.000 0.00 0.00 46.88 3.18
419 420 1.068585 GTGGAACCCTATACGGCCG 59.931 63.158 26.86 26.86 0.00 6.13
420 421 1.076118 TGGAACCCTATACGGCCGA 60.076 57.895 35.90 16.57 0.00 5.54
421 422 0.470456 TGGAACCCTATACGGCCGAT 60.470 55.000 35.90 22.48 0.00 4.18
422 423 0.245813 GGAACCCTATACGGCCGATC 59.754 60.000 35.90 15.00 0.00 3.69
423 424 1.254954 GAACCCTATACGGCCGATCT 58.745 55.000 35.90 17.88 0.00 2.75
424 425 1.617357 GAACCCTATACGGCCGATCTT 59.383 52.381 35.90 12.54 0.00 2.40
425 426 1.713297 ACCCTATACGGCCGATCTTT 58.287 50.000 35.90 12.08 0.00 2.52
426 427 1.617357 ACCCTATACGGCCGATCTTTC 59.383 52.381 35.90 0.00 0.00 2.62
427 428 1.616865 CCCTATACGGCCGATCTTTCA 59.383 52.381 35.90 8.13 0.00 2.69
428 429 2.609737 CCCTATACGGCCGATCTTTCAC 60.610 54.545 35.90 0.00 0.00 3.18
429 430 2.316792 CTATACGGCCGATCTTTCACG 58.683 52.381 35.90 0.02 0.00 4.35
430 431 0.742505 ATACGGCCGATCTTTCACGA 59.257 50.000 35.90 3.37 0.00 4.35
431 432 0.527113 TACGGCCGATCTTTCACGAA 59.473 50.000 35.90 0.00 0.00 3.85
432 433 0.320073 ACGGCCGATCTTTCACGAAA 60.320 50.000 35.90 0.00 0.00 3.46
433 434 0.370273 CGGCCGATCTTTCACGAAAG 59.630 55.000 24.07 12.40 46.82 2.62
434 435 0.727398 GGCCGATCTTTCACGAAAGG 59.273 55.000 17.23 5.63 45.80 3.11
435 436 1.674817 GGCCGATCTTTCACGAAAGGA 60.675 52.381 17.23 6.84 45.80 3.36
436 437 1.661112 GCCGATCTTTCACGAAAGGAG 59.339 52.381 17.23 9.96 45.80 3.69
437 438 1.661112 CCGATCTTTCACGAAAGGAGC 59.339 52.381 17.23 7.95 45.80 4.70
438 439 2.611518 CGATCTTTCACGAAAGGAGCT 58.388 47.619 17.23 0.00 45.80 4.09
439 440 2.346847 CGATCTTTCACGAAAGGAGCTG 59.653 50.000 17.23 2.91 45.80 4.24
440 441 3.589988 GATCTTTCACGAAAGGAGCTGA 58.410 45.455 17.23 0.54 45.80 4.26
441 442 3.685139 TCTTTCACGAAAGGAGCTGAT 57.315 42.857 17.23 0.00 45.80 2.90
442 443 4.801330 TCTTTCACGAAAGGAGCTGATA 57.199 40.909 17.23 0.00 45.80 2.15
443 444 4.495422 TCTTTCACGAAAGGAGCTGATAC 58.505 43.478 17.23 0.00 45.80 2.24
444 445 2.961526 TCACGAAAGGAGCTGATACC 57.038 50.000 0.00 0.00 0.00 2.73
445 446 2.176045 TCACGAAAGGAGCTGATACCA 58.824 47.619 0.00 0.00 0.00 3.25
446 447 2.766263 TCACGAAAGGAGCTGATACCAT 59.234 45.455 0.00 0.00 0.00 3.55
447 448 2.868583 CACGAAAGGAGCTGATACCATG 59.131 50.000 0.00 0.00 0.00 3.66
448 449 2.766263 ACGAAAGGAGCTGATACCATGA 59.234 45.455 0.00 0.00 0.00 3.07
449 450 3.197766 ACGAAAGGAGCTGATACCATGAA 59.802 43.478 0.00 0.00 0.00 2.57
450 451 3.806521 CGAAAGGAGCTGATACCATGAAG 59.193 47.826 0.00 0.00 0.00 3.02
451 452 4.442052 CGAAAGGAGCTGATACCATGAAGA 60.442 45.833 0.00 0.00 0.00 2.87
452 453 4.686191 AAGGAGCTGATACCATGAAGAG 57.314 45.455 0.00 0.00 0.00 2.85
453 454 2.368221 AGGAGCTGATACCATGAAGAGC 59.632 50.000 0.00 0.00 0.00 4.09
454 455 2.103771 GGAGCTGATACCATGAAGAGCA 59.896 50.000 0.00 0.00 0.00 4.26
455 456 3.129871 GAGCTGATACCATGAAGAGCAC 58.870 50.000 0.00 0.00 0.00 4.40
456 457 1.863454 GCTGATACCATGAAGAGCACG 59.137 52.381 0.00 0.00 0.00 5.34
457 458 2.477825 CTGATACCATGAAGAGCACGG 58.522 52.381 0.00 0.00 35.51 4.94
458 459 2.101415 CTGATACCATGAAGAGCACGGA 59.899 50.000 0.00 0.00 32.36 4.69
459 460 2.101415 TGATACCATGAAGAGCACGGAG 59.899 50.000 0.00 0.00 32.36 4.63
460 461 1.847328 TACCATGAAGAGCACGGAGA 58.153 50.000 0.00 0.00 32.36 3.71
461 462 0.976641 ACCATGAAGAGCACGGAGAA 59.023 50.000 0.00 0.00 32.36 2.87
462 463 1.338200 ACCATGAAGAGCACGGAGAAC 60.338 52.381 0.00 0.00 32.36 3.01
463 464 1.338105 CCATGAAGAGCACGGAGAACA 60.338 52.381 0.00 0.00 29.14 3.18
464 465 1.728971 CATGAAGAGCACGGAGAACAC 59.271 52.381 0.00 0.00 0.00 3.32
465 466 0.318699 TGAAGAGCACGGAGAACACG 60.319 55.000 0.00 0.00 37.36 4.49
466 467 0.039437 GAAGAGCACGGAGAACACGA 60.039 55.000 0.00 0.00 34.93 4.35
467 468 0.039074 AAGAGCACGGAGAACACGAG 60.039 55.000 0.00 0.00 34.93 4.18
468 469 1.444553 GAGCACGGAGAACACGAGG 60.445 63.158 0.00 0.00 34.93 4.63
469 470 2.432628 GCACGGAGAACACGAGGG 60.433 66.667 0.00 0.00 34.93 4.30
470 471 2.261671 CACGGAGAACACGAGGGG 59.738 66.667 0.00 0.00 34.93 4.79
471 472 2.995574 ACGGAGAACACGAGGGGG 60.996 66.667 0.00 0.00 34.93 5.40
472 473 2.678934 CGGAGAACACGAGGGGGA 60.679 66.667 0.00 0.00 0.00 4.81
473 474 2.280552 CGGAGAACACGAGGGGGAA 61.281 63.158 0.00 0.00 0.00 3.97
474 475 1.823169 CGGAGAACACGAGGGGGAAA 61.823 60.000 0.00 0.00 0.00 3.13
475 476 0.399075 GGAGAACACGAGGGGGAAAA 59.601 55.000 0.00 0.00 0.00 2.29
476 477 1.520494 GAGAACACGAGGGGGAAAAC 58.480 55.000 0.00 0.00 0.00 2.43
477 478 0.250166 AGAACACGAGGGGGAAAACG 60.250 55.000 0.00 0.00 0.00 3.60
478 479 0.249996 GAACACGAGGGGGAAAACGA 60.250 55.000 0.00 0.00 0.00 3.85
479 480 0.250166 AACACGAGGGGGAAAACGAG 60.250 55.000 0.00 0.00 0.00 4.18
480 481 1.375523 CACGAGGGGGAAAACGAGG 60.376 63.158 0.00 0.00 0.00 4.63
481 482 2.267961 CGAGGGGGAAAACGAGGG 59.732 66.667 0.00 0.00 0.00 4.30
482 483 2.675371 GAGGGGGAAAACGAGGGG 59.325 66.667 0.00 0.00 0.00 4.79
483 484 1.921857 GAGGGGGAAAACGAGGGGA 60.922 63.158 0.00 0.00 0.00 4.81
484 485 1.464593 AGGGGGAAAACGAGGGGAA 60.465 57.895 0.00 0.00 0.00 3.97
485 486 0.849540 AGGGGGAAAACGAGGGGAAT 60.850 55.000 0.00 0.00 0.00 3.01
486 487 0.395311 GGGGGAAAACGAGGGGAATC 60.395 60.000 0.00 0.00 0.00 2.52
487 488 0.330267 GGGGAAAACGAGGGGAATCA 59.670 55.000 0.00 0.00 0.00 2.57
488 489 1.460504 GGGAAAACGAGGGGAATCAC 58.539 55.000 0.00 0.00 0.00 3.06
489 490 1.084289 GGAAAACGAGGGGAATCACG 58.916 55.000 0.00 0.00 0.00 4.35
490 491 1.338389 GGAAAACGAGGGGAATCACGA 60.338 52.381 0.00 0.00 0.00 4.35
491 492 2.000447 GAAAACGAGGGGAATCACGAG 59.000 52.381 0.00 0.00 0.00 4.18
492 493 0.249398 AAACGAGGGGAATCACGAGG 59.751 55.000 0.00 0.00 0.00 4.63
493 494 1.614241 AACGAGGGGAATCACGAGGG 61.614 60.000 0.00 0.00 0.00 4.30
494 495 2.797278 CGAGGGGAATCACGAGGGG 61.797 68.421 0.00 0.00 0.00 4.79
495 496 1.382695 GAGGGGAATCACGAGGGGA 60.383 63.158 0.00 0.00 0.00 4.81
496 497 0.981277 GAGGGGAATCACGAGGGGAA 60.981 60.000 0.00 0.00 0.00 3.97
497 498 0.549169 AGGGGAATCACGAGGGGAAA 60.549 55.000 0.00 0.00 0.00 3.13
498 499 0.393944 GGGGAATCACGAGGGGAAAC 60.394 60.000 0.00 0.00 0.00 2.78
499 500 0.326927 GGGAATCACGAGGGGAAACA 59.673 55.000 0.00 0.00 0.00 2.83
500 501 1.450025 GGAATCACGAGGGGAAACAC 58.550 55.000 0.00 0.00 0.00 3.32
501 502 1.271163 GGAATCACGAGGGGAAACACA 60.271 52.381 0.00 0.00 34.58 3.72
502 503 2.500229 GAATCACGAGGGGAAACACAA 58.500 47.619 0.00 0.00 34.58 3.33
503 504 2.185004 ATCACGAGGGGAAACACAAG 57.815 50.000 0.00 0.00 34.58 3.16
504 505 1.124780 TCACGAGGGGAAACACAAGA 58.875 50.000 0.00 0.00 34.58 3.02
505 506 1.487142 TCACGAGGGGAAACACAAGAA 59.513 47.619 0.00 0.00 34.58 2.52
506 507 2.092861 TCACGAGGGGAAACACAAGAAA 60.093 45.455 0.00 0.00 34.58 2.52
507 508 2.685897 CACGAGGGGAAACACAAGAAAA 59.314 45.455 0.00 0.00 34.58 2.29
508 509 3.129638 CACGAGGGGAAACACAAGAAAAA 59.870 43.478 0.00 0.00 34.58 1.94
509 510 3.129813 ACGAGGGGAAACACAAGAAAAAC 59.870 43.478 0.00 0.00 34.58 2.43
510 511 3.129638 CGAGGGGAAACACAAGAAAAACA 59.870 43.478 0.00 0.00 34.58 2.83
511 512 4.430007 GAGGGGAAACACAAGAAAAACAC 58.570 43.478 0.00 0.00 34.58 3.32
512 513 4.093743 AGGGGAAACACAAGAAAAACACT 58.906 39.130 0.00 0.00 34.58 3.55
513 514 5.265989 AGGGGAAACACAAGAAAAACACTA 58.734 37.500 0.00 0.00 34.58 2.74
514 515 5.717654 AGGGGAAACACAAGAAAAACACTAA 59.282 36.000 0.00 0.00 34.58 2.24
515 516 6.211785 AGGGGAAACACAAGAAAAACACTAAA 59.788 34.615 0.00 0.00 34.58 1.85
516 517 6.874664 GGGGAAACACAAGAAAAACACTAAAA 59.125 34.615 0.00 0.00 0.00 1.52
517 518 7.148540 GGGGAAACACAAGAAAAACACTAAAAC 60.149 37.037 0.00 0.00 0.00 2.43
518 519 7.148540 GGGAAACACAAGAAAAACACTAAAACC 60.149 37.037 0.00 0.00 0.00 3.27
519 520 7.385478 GGAAACACAAGAAAAACACTAAAACCA 59.615 33.333 0.00 0.00 0.00 3.67
520 521 8.664211 AAACACAAGAAAAACACTAAAACCAA 57.336 26.923 0.00 0.00 0.00 3.67
521 522 7.646446 ACACAAGAAAAACACTAAAACCAAC 57.354 32.000 0.00 0.00 0.00 3.77
522 523 7.210873 ACACAAGAAAAACACTAAAACCAACA 58.789 30.769 0.00 0.00 0.00 3.33
523 524 7.711339 ACACAAGAAAAACACTAAAACCAACAA 59.289 29.630 0.00 0.00 0.00 2.83
524 525 8.220434 CACAAGAAAAACACTAAAACCAACAAG 58.780 33.333 0.00 0.00 0.00 3.16
525 526 8.145122 ACAAGAAAAACACTAAAACCAACAAGA 58.855 29.630 0.00 0.00 0.00 3.02
526 527 9.150348 CAAGAAAAACACTAAAACCAACAAGAT 57.850 29.630 0.00 0.00 0.00 2.40
530 531 9.541143 AAAAACACTAAAACCAACAAGATATGG 57.459 29.630 0.00 0.00 42.60 2.74
537 538 4.365514 ACCAACAAGATATGGTCACACA 57.634 40.909 0.00 0.00 46.94 3.72
538 539 4.922206 ACCAACAAGATATGGTCACACAT 58.078 39.130 0.00 0.00 46.94 3.21
539 540 6.061022 ACCAACAAGATATGGTCACACATA 57.939 37.500 0.00 0.00 46.94 2.29
540 541 6.662755 ACCAACAAGATATGGTCACACATAT 58.337 36.000 0.00 0.00 46.94 1.78
541 542 6.543465 ACCAACAAGATATGGTCACACATATG 59.457 38.462 0.00 0.00 46.94 1.78
542 543 6.432936 CAACAAGATATGGTCACACATATGC 58.567 40.000 1.58 0.00 42.48 3.14
543 544 5.933617 ACAAGATATGGTCACACATATGCT 58.066 37.500 1.58 0.00 42.48 3.79
544 545 7.066307 ACAAGATATGGTCACACATATGCTA 57.934 36.000 1.58 0.00 42.48 3.49
545 546 7.157347 ACAAGATATGGTCACACATATGCTAG 58.843 38.462 1.58 0.00 42.48 3.42
546 547 7.015584 ACAAGATATGGTCACACATATGCTAGA 59.984 37.037 1.58 0.00 42.48 2.43
547 548 7.730672 AGATATGGTCACACATATGCTAGAT 57.269 36.000 1.58 0.00 42.48 1.98
548 549 7.780064 AGATATGGTCACACATATGCTAGATC 58.220 38.462 1.58 0.00 42.48 2.75
549 550 7.618907 AGATATGGTCACACATATGCTAGATCT 59.381 37.037 1.58 0.00 42.48 2.75
550 551 5.876651 TGGTCACACATATGCTAGATCTT 57.123 39.130 0.00 0.00 0.00 2.40
551 552 5.847304 TGGTCACACATATGCTAGATCTTC 58.153 41.667 0.00 0.00 0.00 2.87
552 553 4.920340 GGTCACACATATGCTAGATCTTCG 59.080 45.833 0.00 0.00 0.00 3.79
553 554 5.278512 GGTCACACATATGCTAGATCTTCGA 60.279 44.000 0.00 0.00 0.00 3.71
554 555 6.209361 GTCACACATATGCTAGATCTTCGAA 58.791 40.000 0.00 0.00 0.00 3.71
555 556 6.697455 GTCACACATATGCTAGATCTTCGAAA 59.303 38.462 0.00 0.00 0.00 3.46
556 557 6.697455 TCACACATATGCTAGATCTTCGAAAC 59.303 38.462 0.00 0.00 0.00 2.78
557 558 6.476706 CACACATATGCTAGATCTTCGAAACA 59.523 38.462 0.00 0.00 0.00 2.83
558 559 6.477033 ACACATATGCTAGATCTTCGAAACAC 59.523 38.462 0.00 0.00 0.00 3.32
559 560 6.476706 CACATATGCTAGATCTTCGAAACACA 59.523 38.462 0.00 0.00 0.00 3.72
560 561 7.010460 CACATATGCTAGATCTTCGAAACACAA 59.990 37.037 0.00 0.00 0.00 3.33
561 562 7.549134 ACATATGCTAGATCTTCGAAACACAAA 59.451 33.333 0.00 0.00 0.00 2.83
562 563 5.845985 TGCTAGATCTTCGAAACACAAAG 57.154 39.130 0.00 0.00 0.00 2.77
563 564 5.538118 TGCTAGATCTTCGAAACACAAAGA 58.462 37.500 0.00 0.00 33.83 2.52
564 565 5.635280 TGCTAGATCTTCGAAACACAAAGAG 59.365 40.000 0.00 0.00 32.89 2.85
565 566 5.864474 GCTAGATCTTCGAAACACAAAGAGA 59.136 40.000 0.00 0.00 32.89 3.10
566 567 6.533367 GCTAGATCTTCGAAACACAAAGAGAT 59.467 38.462 0.00 0.00 32.89 2.75
567 568 7.702772 GCTAGATCTTCGAAACACAAAGAGATA 59.297 37.037 0.00 0.00 32.89 1.98
568 569 7.820044 AGATCTTCGAAACACAAAGAGATAC 57.180 36.000 0.00 0.00 32.89 2.24
569 570 7.378966 AGATCTTCGAAACACAAAGAGATACA 58.621 34.615 0.00 0.00 32.89 2.29
570 571 7.872993 AGATCTTCGAAACACAAAGAGATACAA 59.127 33.333 0.00 0.00 32.89 2.41
571 572 7.408132 TCTTCGAAACACAAAGAGATACAAG 57.592 36.000 0.00 0.00 0.00 3.16
572 573 7.207383 TCTTCGAAACACAAAGAGATACAAGA 58.793 34.615 0.00 0.00 0.00 3.02
573 574 7.872993 TCTTCGAAACACAAAGAGATACAAGAT 59.127 33.333 0.00 0.00 0.00 2.40
574 575 7.582435 TCGAAACACAAAGAGATACAAGATC 57.418 36.000 0.00 0.00 0.00 2.75
575 576 6.590292 TCGAAACACAAAGAGATACAAGATCC 59.410 38.462 0.00 0.00 0.00 3.36
576 577 6.454318 CGAAACACAAAGAGATACAAGATCCG 60.454 42.308 0.00 0.00 0.00 4.18
577 578 5.661056 ACACAAAGAGATACAAGATCCGA 57.339 39.130 0.00 0.00 0.00 4.55
578 579 6.037786 ACACAAAGAGATACAAGATCCGAA 57.962 37.500 0.00 0.00 0.00 4.30
579 580 6.644347 ACACAAAGAGATACAAGATCCGAAT 58.356 36.000 0.00 0.00 0.00 3.34
580 581 6.758886 ACACAAAGAGATACAAGATCCGAATC 59.241 38.462 0.00 0.00 0.00 2.52
581 582 6.201806 CACAAAGAGATACAAGATCCGAATCC 59.798 42.308 0.00 0.00 31.78 3.01
582 583 6.127054 ACAAAGAGATACAAGATCCGAATCCA 60.127 38.462 0.00 0.00 31.78 3.41
583 584 6.485830 AAGAGATACAAGATCCGAATCCAA 57.514 37.500 0.00 0.00 31.78 3.53
584 585 5.848406 AGAGATACAAGATCCGAATCCAAC 58.152 41.667 0.00 0.00 31.78 3.77
585 586 5.363868 AGAGATACAAGATCCGAATCCAACA 59.636 40.000 0.00 0.00 31.78 3.33
586 587 5.989477 AGATACAAGATCCGAATCCAACAA 58.011 37.500 0.00 0.00 31.78 2.83
587 588 6.414732 AGATACAAGATCCGAATCCAACAAA 58.585 36.000 0.00 0.00 31.78 2.83
588 589 6.540189 AGATACAAGATCCGAATCCAACAAAG 59.460 38.462 0.00 0.00 31.78 2.77
589 590 3.758554 ACAAGATCCGAATCCAACAAAGG 59.241 43.478 0.00 0.00 31.78 3.11
590 591 4.009675 CAAGATCCGAATCCAACAAAGGA 58.990 43.478 0.00 0.00 43.01 3.36
591 592 3.610911 AGATCCGAATCCAACAAAGGAC 58.389 45.455 0.00 0.00 41.30 3.85
592 593 1.803334 TCCGAATCCAACAAAGGACG 58.197 50.000 0.00 0.00 41.30 4.79
593 594 1.345089 TCCGAATCCAACAAAGGACGA 59.655 47.619 0.00 0.00 41.30 4.20
594 595 2.027561 TCCGAATCCAACAAAGGACGAT 60.028 45.455 0.00 0.00 41.30 3.73
595 596 3.196039 TCCGAATCCAACAAAGGACGATA 59.804 43.478 0.00 0.00 41.30 2.92
596 597 3.308866 CCGAATCCAACAAAGGACGATAC 59.691 47.826 0.00 0.00 41.30 2.24
597 598 3.930229 CGAATCCAACAAAGGACGATACA 59.070 43.478 0.00 0.00 41.30 2.29
598 599 4.570772 CGAATCCAACAAAGGACGATACAT 59.429 41.667 0.00 0.00 41.30 2.29
599 600 5.751509 CGAATCCAACAAAGGACGATACATA 59.248 40.000 0.00 0.00 41.30 2.29
600 601 6.074302 CGAATCCAACAAAGGACGATACATAG 60.074 42.308 0.00 0.00 41.30 2.23
601 602 5.018539 TCCAACAAAGGACGATACATAGG 57.981 43.478 0.00 0.00 31.23 2.57
602 603 4.127171 CCAACAAAGGACGATACATAGGG 58.873 47.826 0.00 0.00 0.00 3.53
603 604 4.383770 CCAACAAAGGACGATACATAGGGT 60.384 45.833 0.00 0.00 0.00 4.34
604 605 5.163385 CCAACAAAGGACGATACATAGGGTA 60.163 44.000 0.00 0.00 36.16 3.69
605 606 6.342906 CAACAAAGGACGATACATAGGGTAA 58.657 40.000 0.00 0.00 35.14 2.85
606 607 5.910614 ACAAAGGACGATACATAGGGTAAC 58.089 41.667 0.00 0.00 35.14 2.50
619 620 3.430779 GGTAACCGGTTCTTCTCCG 57.569 57.895 26.16 0.00 46.49 4.63
620 621 0.605083 GGTAACCGGTTCTTCTCCGT 59.395 55.000 26.16 0.00 45.63 4.69
621 622 1.670967 GGTAACCGGTTCTTCTCCGTG 60.671 57.143 26.16 0.00 45.63 4.94
622 623 1.270550 GTAACCGGTTCTTCTCCGTGA 59.729 52.381 26.16 0.00 45.63 4.35
623 624 0.317479 AACCGGTTCTTCTCCGTGAG 59.683 55.000 15.86 0.00 45.63 3.51
637 638 2.285827 CGTGAGGAGGTCTTGATGTC 57.714 55.000 0.00 0.00 0.00 3.06
638 639 1.821753 CGTGAGGAGGTCTTGATGTCT 59.178 52.381 0.00 0.00 0.00 3.41
639 640 2.232452 CGTGAGGAGGTCTTGATGTCTT 59.768 50.000 0.00 0.00 0.00 3.01
640 641 3.674682 CGTGAGGAGGTCTTGATGTCTTC 60.675 52.174 0.00 0.00 0.00 2.87
641 642 3.513515 GTGAGGAGGTCTTGATGTCTTCT 59.486 47.826 0.00 0.00 0.00 2.85
642 643 3.766591 TGAGGAGGTCTTGATGTCTTCTC 59.233 47.826 0.00 0.00 33.59 2.87
643 644 3.103742 AGGAGGTCTTGATGTCTTCTCC 58.896 50.000 0.00 0.00 39.49 3.71
644 645 2.159170 GGAGGTCTTGATGTCTTCTCCG 60.159 54.545 0.00 0.00 31.47 4.63
645 646 2.494073 GAGGTCTTGATGTCTTCTCCGT 59.506 50.000 0.00 0.00 0.00 4.69
646 647 2.232452 AGGTCTTGATGTCTTCTCCGTG 59.768 50.000 0.00 0.00 0.00 4.94
647 648 2.231478 GGTCTTGATGTCTTCTCCGTGA 59.769 50.000 0.00 0.00 0.00 4.35
648 649 3.506810 GTCTTGATGTCTTCTCCGTGAG 58.493 50.000 0.00 0.00 0.00 3.51
662 663 2.355717 CGTGAGGAGGTCTTGAAGAC 57.644 55.000 16.70 16.70 44.32 3.01
674 675 4.451096 GGTCTTGAAGACTAAATGACGCAA 59.549 41.667 23.06 0.00 44.46 4.85
742 743 4.319549 GCCTCTTTTGTCTGAAAACTACCG 60.320 45.833 0.00 0.00 0.00 4.02
769 770 2.485479 GGGGCAGGTATGTGACACATAG 60.485 54.545 25.21 16.14 41.31 2.23
793 794 2.287188 CCGTTCGCTCGGTTTAGCTATA 60.287 50.000 9.35 0.00 44.77 1.31
826 827 0.608035 GCCCCAATTTCAGGTCGACA 60.608 55.000 18.91 0.00 0.00 4.35
831 832 1.086696 AATTTCAGGTCGACATGGCG 58.913 50.000 27.93 16.88 0.00 5.69
901 902 3.611057 GCGATATAACCACCGTTCGAGAT 60.611 47.826 0.00 0.00 33.17 2.75
909 910 2.921754 CCACCGTTCGAGATAGAAACAC 59.078 50.000 0.00 0.00 0.00 3.32
1055 1056 1.533625 GACCACAGCAATGCTACCAA 58.466 50.000 7.70 0.00 36.40 3.67
1190 1191 8.753497 ACATTCTATTTCTTAGGGCTTAAAGG 57.247 34.615 0.00 0.00 0.00 3.11
1205 1206 0.971386 AAAGGCCCTTTACGACTCGA 59.029 50.000 7.03 0.00 31.35 4.04
1207 1208 0.531200 AGGCCCTTTACGACTCGAAG 59.469 55.000 5.20 0.00 0.00 3.79
1323 1324 3.903090 AGGAAATTTTTGGGATGTGCAGA 59.097 39.130 0.00 0.00 0.00 4.26
1327 1328 1.702182 TTTTGGGATGTGCAGAGCAA 58.298 45.000 0.17 0.00 41.47 3.91
1345 1346 3.565482 AGCAAGTGTGTGATTTACCTGTG 59.435 43.478 0.00 0.00 0.00 3.66
1352 1353 7.165485 AGTGTGTGATTTACCTGTGCTTATTA 58.835 34.615 0.00 0.00 0.00 0.98
1399 1401 9.941664 CAGTAAATGTAGCAATTCAATTAGGAG 57.058 33.333 0.00 0.00 0.00 3.69
1403 1405 8.930846 AATGTAGCAATTCAATTAGGAGCTAT 57.069 30.769 3.85 0.00 35.80 2.97
1407 1409 7.507733 AGCAATTCAATTAGGAGCTATTGAG 57.492 36.000 9.08 1.58 34.92 3.02
1468 1470 9.561069 AGATGTGATTATGTTAAATGGGTAGAC 57.439 33.333 0.00 0.00 0.00 2.59
1500 1502 3.311871 CCATCATCACTGCAGAAAGCTAC 59.688 47.826 23.35 0.00 45.94 3.58
1666 1668 5.929058 AGACTGTGAATGAGAAGCAGATA 57.071 39.130 0.00 0.00 0.00 1.98
1761 1763 1.936547 GGATGCTGCAGCTAGTAACAC 59.063 52.381 36.61 18.28 42.66 3.32
1765 1767 0.716108 CTGCAGCTAGTAACACGCAC 59.284 55.000 0.00 0.00 0.00 5.34
2245 2248 8.465999 TGTCACAAGTCTTTCACAAAATAACAT 58.534 29.630 0.00 0.00 0.00 2.71
2259 2262 8.103320 CACAAAATAACATGCATAATTGTCACG 58.897 33.333 0.00 0.00 0.00 4.35
2269 2272 5.238432 TGCATAATTGTCACGAGTTCAAACT 59.762 36.000 0.00 0.00 43.16 2.66
2270 2273 5.565259 GCATAATTGTCACGAGTTCAAACTG 59.435 40.000 0.00 0.00 39.88 3.16
2271 2274 6.658831 CATAATTGTCACGAGTTCAAACTGT 58.341 36.000 0.00 0.00 39.88 3.55
2272 2275 7.570507 GCATAATTGTCACGAGTTCAAACTGTA 60.571 37.037 0.00 0.00 39.88 2.74
2273 2276 6.671614 AATTGTCACGAGTTCAAACTGTAA 57.328 33.333 0.00 0.00 39.88 2.41
2274 2277 5.712217 TTGTCACGAGTTCAAACTGTAAG 57.288 39.130 0.00 0.00 39.88 2.34
2290 2293 4.184629 CTGTAAGTGAATCTAGTGCCACC 58.815 47.826 0.00 0.00 0.00 4.61
2291 2294 2.789409 AAGTGAATCTAGTGCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
2292 2295 0.912486 AGTGAATCTAGTGCCACCCC 59.088 55.000 0.00 0.00 0.00 4.95
2293 2296 0.912486 GTGAATCTAGTGCCACCCCT 59.088 55.000 0.00 0.00 0.00 4.79
2294 2297 2.116238 GTGAATCTAGTGCCACCCCTA 58.884 52.381 0.00 0.00 0.00 3.53
2295 2298 2.103263 GTGAATCTAGTGCCACCCCTAG 59.897 54.545 0.00 0.00 33.46 3.02
2296 2299 2.292918 TGAATCTAGTGCCACCCCTAGT 60.293 50.000 0.00 0.00 33.81 2.57
2297 2300 2.570386 ATCTAGTGCCACCCCTAGTT 57.430 50.000 0.00 0.00 33.81 2.24
2298 2301 1.568504 TCTAGTGCCACCCCTAGTTG 58.431 55.000 0.00 0.00 33.81 3.16
2299 2302 0.541863 CTAGTGCCACCCCTAGTTGG 59.458 60.000 0.00 0.00 0.00 3.77
2300 2303 0.178885 TAGTGCCACCCCTAGTTGGT 60.179 55.000 0.00 0.53 36.21 3.67
2301 2304 1.065997 AGTGCCACCCCTAGTTGGTT 61.066 55.000 0.00 0.00 32.46 3.67
2302 2305 0.178973 GTGCCACCCCTAGTTGGTTT 60.179 55.000 0.00 0.00 32.46 3.27
2303 2306 0.558712 TGCCACCCCTAGTTGGTTTT 59.441 50.000 0.00 0.00 32.46 2.43
2304 2307 0.966179 GCCACCCCTAGTTGGTTTTG 59.034 55.000 0.00 0.00 32.46 2.44
2305 2308 1.627864 CCACCCCTAGTTGGTTTTGG 58.372 55.000 0.00 0.00 32.46 3.28
2306 2309 1.146152 CCACCCCTAGTTGGTTTTGGA 59.854 52.381 0.00 0.00 32.46 3.53
2307 2310 2.514803 CACCCCTAGTTGGTTTTGGAG 58.485 52.381 0.00 0.00 32.46 3.86
2308 2311 2.141067 ACCCCTAGTTGGTTTTGGAGT 58.859 47.619 0.00 0.00 29.75 3.85
2309 2312 3.073356 CACCCCTAGTTGGTTTTGGAGTA 59.927 47.826 0.00 0.00 32.46 2.59
2310 2313 3.920841 ACCCCTAGTTGGTTTTGGAGTAT 59.079 43.478 0.00 0.00 29.75 2.12
2311 2314 4.355889 ACCCCTAGTTGGTTTTGGAGTATT 59.644 41.667 0.00 0.00 29.75 1.89
2704 2713 8.771920 AGTCGATATAACACACTTTCAATTGA 57.228 30.769 3.38 3.38 0.00 2.57
2779 2788 2.209838 TTAGCTATGTCGACTGCAGC 57.790 50.000 15.27 20.05 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.152964 GGGAACGTACCTCGGCCC 62.153 72.222 0.00 0.00 45.54 5.80
27 28 0.108615 CGGAAGTACTGCTCCCACAG 60.109 60.000 7.84 0.00 43.59 3.66
28 29 0.830444 ACGGAAGTACTGCTCCCACA 60.830 55.000 7.84 0.00 46.88 4.17
29 30 1.972978 ACGGAAGTACTGCTCCCAC 59.027 57.895 7.84 0.00 46.88 4.61
30 31 4.533318 ACGGAAGTACTGCTCCCA 57.467 55.556 7.84 0.00 46.88 4.37
41 42 3.414700 GTGTGGCAGCGACGGAAG 61.415 66.667 2.81 0.00 0.00 3.46
42 43 4.980805 GGTGTGGCAGCGACGGAA 62.981 66.667 2.81 0.00 0.00 4.30
51 52 4.687215 GAGCTGCTCGGTGTGGCA 62.687 66.667 14.68 0.00 36.94 4.92
60 61 1.949847 TTGGTAGGCTCGAGCTGCTC 61.950 60.000 34.46 19.53 41.70 4.26
61 62 1.984570 TTGGTAGGCTCGAGCTGCT 60.985 57.895 34.46 25.85 41.70 4.24
62 63 1.811679 GTTGGTAGGCTCGAGCTGC 60.812 63.158 34.46 22.84 41.70 5.25
63 64 1.517257 CGTTGGTAGGCTCGAGCTG 60.517 63.158 34.46 12.07 41.70 4.24
64 65 1.677966 TCGTTGGTAGGCTCGAGCT 60.678 57.895 34.46 22.80 41.70 4.09
65 66 1.516603 GTCGTTGGTAGGCTCGAGC 60.517 63.158 29.38 29.38 41.14 5.03
66 67 1.226323 CGTCGTTGGTAGGCTCGAG 60.226 63.158 8.45 8.45 33.09 4.04
67 68 1.915614 GACGTCGTTGGTAGGCTCGA 61.916 60.000 0.00 0.00 0.00 4.04
68 69 1.513586 GACGTCGTTGGTAGGCTCG 60.514 63.158 0.00 0.00 0.00 5.03
69 70 1.513586 CGACGTCGTTGGTAGGCTC 60.514 63.158 29.08 0.00 34.11 4.70
70 71 2.564975 CGACGTCGTTGGTAGGCT 59.435 61.111 29.08 0.00 34.11 4.58
92 93 1.219393 GGAGTTGAGCCTTCCGGAG 59.781 63.158 3.34 0.00 0.00 4.63
93 94 3.388841 GGAGTTGAGCCTTCCGGA 58.611 61.111 0.00 0.00 0.00 5.14
96 97 1.446272 CGTCGGAGTTGAGCCTTCC 60.446 63.158 0.00 0.00 0.00 3.46
97 98 1.446272 CCGTCGGAGTTGAGCCTTC 60.446 63.158 4.91 0.00 0.00 3.46
98 99 2.657237 CCGTCGGAGTTGAGCCTT 59.343 61.111 4.91 0.00 0.00 4.35
99 100 4.070552 GCCGTCGGAGTTGAGCCT 62.071 66.667 17.49 0.00 0.00 4.58
118 119 4.891727 ACGCCCATCATCGACGGC 62.892 66.667 0.00 0.00 38.07 5.68
119 120 2.961721 CACGCCCATCATCGACGG 60.962 66.667 0.00 0.00 0.00 4.79
120 121 3.630148 GCACGCCCATCATCGACG 61.630 66.667 0.00 0.00 0.00 5.12
121 122 3.272334 GGCACGCCCATCATCGAC 61.272 66.667 0.00 0.00 0.00 4.20
145 146 3.374402 AGGACGACCTCCAGCGTG 61.374 66.667 0.00 0.00 44.13 5.34
164 165 2.027751 GCCGCCCTCGATGTACTC 59.972 66.667 0.00 0.00 38.10 2.59
165 166 2.355986 TTGCCGCCCTCGATGTACT 61.356 57.895 0.00 0.00 38.10 2.73
166 167 2.171725 GTTGCCGCCCTCGATGTAC 61.172 63.158 0.00 0.00 38.10 2.90
167 168 1.966901 ATGTTGCCGCCCTCGATGTA 61.967 55.000 0.00 0.00 38.10 2.29
168 169 3.329542 ATGTTGCCGCCCTCGATGT 62.330 57.895 0.00 0.00 38.10 3.06
169 170 2.514592 ATGTTGCCGCCCTCGATG 60.515 61.111 0.00 0.00 38.10 3.84
170 171 2.514592 CATGTTGCCGCCCTCGAT 60.515 61.111 0.00 0.00 38.10 3.59
171 172 3.700970 TCATGTTGCCGCCCTCGA 61.701 61.111 0.00 0.00 38.10 4.04
172 173 3.499737 GTCATGTTGCCGCCCTCG 61.500 66.667 0.00 0.00 0.00 4.63
173 174 3.134127 GGTCATGTTGCCGCCCTC 61.134 66.667 0.00 0.00 0.00 4.30
174 175 3.925630 CTGGTCATGTTGCCGCCCT 62.926 63.158 0.00 0.00 0.00 5.19
175 176 3.443045 CTGGTCATGTTGCCGCCC 61.443 66.667 0.00 0.00 0.00 6.13
176 177 3.443045 CCTGGTCATGTTGCCGCC 61.443 66.667 0.00 0.00 0.00 6.13
177 178 4.120331 GCCTGGTCATGTTGCCGC 62.120 66.667 0.00 0.00 0.00 6.53
178 179 2.360350 AGCCTGGTCATGTTGCCG 60.360 61.111 0.00 0.00 0.00 5.69
179 180 2.345760 CCAGCCTGGTCATGTTGCC 61.346 63.158 1.39 0.00 31.35 4.52
180 181 1.303561 TCCAGCCTGGTCATGTTGC 60.304 57.895 11.27 0.00 39.03 4.17
181 182 0.037303 ACTCCAGCCTGGTCATGTTG 59.963 55.000 11.27 0.00 39.03 3.33
182 183 1.279271 GTACTCCAGCCTGGTCATGTT 59.721 52.381 11.27 0.00 39.03 2.71
183 184 0.905357 GTACTCCAGCCTGGTCATGT 59.095 55.000 11.27 8.40 39.03 3.21
184 185 0.179000 GGTACTCCAGCCTGGTCATG 59.821 60.000 11.27 2.71 39.03 3.07
185 186 0.983378 GGGTACTCCAGCCTGGTCAT 60.983 60.000 11.27 0.00 41.95 3.06
186 187 1.612442 GGGTACTCCAGCCTGGTCA 60.612 63.158 11.27 0.00 41.95 4.02
187 188 2.368011 GGGGTACTCCAGCCTGGTC 61.368 68.421 11.27 0.40 44.81 4.02
188 189 2.285442 GGGGTACTCCAGCCTGGT 60.285 66.667 11.27 0.00 44.81 4.00
189 190 3.470888 CGGGGTACTCCAGCCTGG 61.471 72.222 13.51 3.69 45.96 4.45
197 198 4.477119 AGGGGGAGCGGGGTACTC 62.477 72.222 0.00 0.00 0.00 2.59
198 199 4.477119 GAGGGGGAGCGGGGTACT 62.477 72.222 0.00 0.00 0.00 2.73
203 204 4.806339 AGAAGGAGGGGGAGCGGG 62.806 72.222 0.00 0.00 0.00 6.13
204 205 3.157949 GAGAAGGAGGGGGAGCGG 61.158 72.222 0.00 0.00 0.00 5.52
205 206 3.157949 GGAGAAGGAGGGGGAGCG 61.158 72.222 0.00 0.00 0.00 5.03
206 207 2.770475 GGGAGAAGGAGGGGGAGC 60.770 72.222 0.00 0.00 0.00 4.70
207 208 2.444895 CGGGAGAAGGAGGGGGAG 60.445 72.222 0.00 0.00 0.00 4.30
208 209 4.798682 GCGGGAGAAGGAGGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
229 230 4.778415 CGTCCACGAGCTCCCACG 62.778 72.222 8.47 7.52 43.02 4.94
240 241 4.796231 ATGCGTCTCGGCGTCCAC 62.796 66.667 6.85 0.93 35.06 4.02
241 242 4.794439 CATGCGTCTCGGCGTCCA 62.794 66.667 6.85 0.00 35.06 4.02
243 244 4.492160 TCCATGCGTCTCGGCGTC 62.492 66.667 6.85 0.00 35.06 5.19
244 245 4.796231 GTCCATGCGTCTCGGCGT 62.796 66.667 6.85 0.00 35.06 5.68
247 248 4.873129 CGGGTCCATGCGTCTCGG 62.873 72.222 0.00 0.00 0.00 4.63
248 249 4.873129 CCGGGTCCATGCGTCTCG 62.873 72.222 0.00 0.00 0.00 4.04
251 252 4.856801 ATGCCGGGTCCATGCGTC 62.857 66.667 2.18 0.00 0.00 5.19
252 253 4.856801 GATGCCGGGTCCATGCGT 62.857 66.667 2.18 0.00 0.00 5.24
254 255 4.195334 AGGATGCCGGGTCCATGC 62.195 66.667 2.18 3.47 38.25 4.06
255 256 2.111878 GAGGATGCCGGGTCCATG 59.888 66.667 2.18 0.00 38.25 3.66
256 257 3.171388 GGAGGATGCCGGGTCCAT 61.171 66.667 2.18 0.00 38.25 3.41
257 258 4.414956 AGGAGGATGCCGGGTCCA 62.415 66.667 2.18 0.00 38.25 4.02
258 259 3.551407 GAGGAGGATGCCGGGTCC 61.551 72.222 2.18 0.00 35.94 4.46
259 260 3.551407 GGAGGAGGATGCCGGGTC 61.551 72.222 2.18 0.00 0.00 4.46
260 261 4.095400 AGGAGGAGGATGCCGGGT 62.095 66.667 2.18 0.00 0.00 5.28
261 262 3.237741 GAGGAGGAGGATGCCGGG 61.238 72.222 2.18 0.00 0.00 5.73
262 263 3.610669 CGAGGAGGAGGATGCCGG 61.611 72.222 0.00 0.00 0.00 6.13
263 264 2.835431 ACGAGGAGGAGGATGCCG 60.835 66.667 0.00 0.00 0.00 5.69
264 265 2.503382 GGACGAGGAGGAGGATGCC 61.503 68.421 0.00 0.00 0.00 4.40
265 266 1.743321 CTGGACGAGGAGGAGGATGC 61.743 65.000 0.00 0.00 0.00 3.91
266 267 1.743321 GCTGGACGAGGAGGAGGATG 61.743 65.000 0.00 0.00 0.00 3.51
267 268 1.456705 GCTGGACGAGGAGGAGGAT 60.457 63.158 0.00 0.00 0.00 3.24
268 269 2.043852 GCTGGACGAGGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
269 270 3.151022 GGCTGGACGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
270 271 3.522731 CGGCTGGACGAGGAGGAG 61.523 72.222 0.00 0.00 35.47 3.69
273 274 4.200283 GAGCGGCTGGACGAGGAG 62.200 72.222 7.50 0.00 35.47 3.69
276 277 4.838486 GACGAGCGGCTGGACGAG 62.838 72.222 19.15 0.34 35.47 4.18
288 289 3.213402 GAGGGAGAGCCGGACGAG 61.213 72.222 5.05 0.00 33.83 4.18
289 290 4.816984 GGAGGGAGAGCCGGACGA 62.817 72.222 5.05 0.00 33.83 4.20
291 292 4.467107 AGGGAGGGAGAGCCGGAC 62.467 72.222 5.05 0.00 33.83 4.79
292 293 4.144727 GAGGGAGGGAGAGCCGGA 62.145 72.222 5.05 0.00 33.83 5.14
294 295 4.150454 AGGAGGGAGGGAGAGCCG 62.150 72.222 0.00 0.00 33.83 5.52
295 296 2.123033 GAGGAGGGAGGGAGAGCC 60.123 72.222 0.00 0.00 0.00 4.70
296 297 2.123033 GGAGGAGGGAGGGAGAGC 60.123 72.222 0.00 0.00 0.00 4.09
297 298 2.612251 GGGAGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
298 299 3.036959 GGGGAGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
299 300 4.548513 CGGGGAGGAGGGAGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
301 302 4.862823 GACGGGGAGGAGGGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
302 303 3.618855 TTGACGGGGAGGAGGGAGG 62.619 68.421 0.00 0.00 0.00 4.30
303 304 2.038975 TTGACGGGGAGGAGGGAG 59.961 66.667 0.00 0.00 0.00 4.30
304 305 2.038975 CTTGACGGGGAGGAGGGA 59.961 66.667 0.00 0.00 0.00 4.20
305 306 3.787001 GCTTGACGGGGAGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
306 307 2.685380 AGCTTGACGGGGAGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
307 308 2.581354 CAGCTTGACGGGGAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
308 309 3.003173 CCAGCTTGACGGGGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
309 310 3.003173 TCCAGCTTGACGGGGAGG 61.003 66.667 0.00 0.00 33.79 4.30
310 311 2.581354 CTCCAGCTTGACGGGGAG 59.419 66.667 1.45 1.45 40.82 4.30
311 312 3.706373 GCTCCAGCTTGACGGGGA 61.706 66.667 0.00 0.00 38.21 4.81
312 313 4.785453 GGCTCCAGCTTGACGGGG 62.785 72.222 0.00 0.00 41.70 5.73
313 314 4.785453 GGGCTCCAGCTTGACGGG 62.785 72.222 0.00 0.00 41.70 5.28
314 315 4.785453 GGGGCTCCAGCTTGACGG 62.785 72.222 0.00 0.00 41.70 4.79
315 316 3.551496 TTGGGGCTCCAGCTTGACG 62.551 63.158 4.89 0.00 45.04 4.35
316 317 1.676967 CTTGGGGCTCCAGCTTGAC 60.677 63.158 4.89 0.00 45.04 3.18
317 318 1.847506 TCTTGGGGCTCCAGCTTGA 60.848 57.895 4.89 0.00 45.04 3.02
318 319 1.676967 GTCTTGGGGCTCCAGCTTG 60.677 63.158 4.89 0.00 45.04 4.01
319 320 2.759795 GTCTTGGGGCTCCAGCTT 59.240 61.111 4.89 0.00 45.04 3.74
320 321 3.710722 CGTCTTGGGGCTCCAGCT 61.711 66.667 4.89 0.00 45.04 4.24
329 330 4.812476 TGATCGGCGCGTCTTGGG 62.812 66.667 9.90 0.00 0.00 4.12
330 331 3.257561 CTGATCGGCGCGTCTTGG 61.258 66.667 9.90 0.00 0.00 3.61
331 332 3.918220 GCTGATCGGCGCGTCTTG 61.918 66.667 11.53 0.00 0.00 3.02
360 361 2.125229 ATGCAGACGCCAGAGCTG 60.125 61.111 0.00 0.00 37.32 4.24
361 362 2.186384 GATGCAGACGCCAGAGCT 59.814 61.111 0.00 0.00 37.32 4.09
362 363 3.260483 CGATGCAGACGCCAGAGC 61.260 66.667 3.34 0.00 37.32 4.09
371 372 2.755876 AGGAGTCGGCGATGCAGA 60.756 61.111 14.79 0.00 0.00 4.26
372 373 2.279120 GAGGAGTCGGCGATGCAG 60.279 66.667 14.79 0.00 0.00 4.41
373 374 3.838271 GGAGGAGTCGGCGATGCA 61.838 66.667 14.79 0.00 0.00 3.96
374 375 4.593864 GGGAGGAGTCGGCGATGC 62.594 72.222 14.79 8.24 0.00 3.91
375 376 2.835431 AGGGAGGAGTCGGCGATG 60.835 66.667 14.79 0.00 0.00 3.84
376 377 2.648613 ATCAGGGAGGAGTCGGCGAT 62.649 60.000 14.79 1.58 0.00 4.58
377 378 3.360423 ATCAGGGAGGAGTCGGCGA 62.360 63.158 4.99 4.99 0.00 5.54
378 379 2.835431 ATCAGGGAGGAGTCGGCG 60.835 66.667 0.00 0.00 0.00 6.46
379 380 0.755698 TACATCAGGGAGGAGTCGGC 60.756 60.000 0.00 0.00 0.00 5.54
380 381 1.323412 CTACATCAGGGAGGAGTCGG 58.677 60.000 0.00 0.00 0.00 4.79
381 382 1.323412 CCTACATCAGGGAGGAGTCG 58.677 60.000 0.00 0.00 41.26 4.18
400 401 1.448924 GGCCGTATAGGGTTCCACC 59.551 63.158 12.88 1.77 41.48 4.61
401 402 1.068585 CGGCCGTATAGGGTTCCAC 59.931 63.158 19.50 0.00 41.48 4.02
402 403 0.470456 ATCGGCCGTATAGGGTTCCA 60.470 55.000 27.15 0.03 41.48 3.53
403 404 0.245813 GATCGGCCGTATAGGGTTCC 59.754 60.000 27.15 5.80 41.48 3.62
404 405 1.254954 AGATCGGCCGTATAGGGTTC 58.745 55.000 27.15 10.01 41.48 3.62
405 406 1.713297 AAGATCGGCCGTATAGGGTT 58.287 50.000 27.15 7.39 41.48 4.11
406 407 1.617357 GAAAGATCGGCCGTATAGGGT 59.383 52.381 27.15 5.59 41.48 4.34
407 408 1.616865 TGAAAGATCGGCCGTATAGGG 59.383 52.381 27.15 7.12 41.48 3.53
408 409 2.673833 GTGAAAGATCGGCCGTATAGG 58.326 52.381 27.15 0.00 44.97 2.57
409 410 2.031420 TCGTGAAAGATCGGCCGTATAG 60.031 50.000 27.15 8.20 0.00 1.31
410 411 1.948834 TCGTGAAAGATCGGCCGTATA 59.051 47.619 27.15 6.18 0.00 1.47
411 412 0.742505 TCGTGAAAGATCGGCCGTAT 59.257 50.000 27.15 17.27 0.00 3.06
412 413 0.527113 TTCGTGAAAGATCGGCCGTA 59.473 50.000 27.15 12.70 0.00 4.02
413 414 0.320073 TTTCGTGAAAGATCGGCCGT 60.320 50.000 27.15 12.96 0.00 5.68
414 415 2.451693 TTTCGTGAAAGATCGGCCG 58.548 52.632 22.12 22.12 0.00 6.13
422 423 3.619038 GGTATCAGCTCCTTTCGTGAAAG 59.381 47.826 14.05 14.05 45.47 2.62
423 424 3.007506 TGGTATCAGCTCCTTTCGTGAAA 59.992 43.478 0.00 0.00 0.00 2.69
424 425 2.565391 TGGTATCAGCTCCTTTCGTGAA 59.435 45.455 0.00 0.00 0.00 3.18
425 426 2.176045 TGGTATCAGCTCCTTTCGTGA 58.824 47.619 0.00 0.00 0.00 4.35
426 427 2.672961 TGGTATCAGCTCCTTTCGTG 57.327 50.000 0.00 0.00 0.00 4.35
427 428 2.766263 TCATGGTATCAGCTCCTTTCGT 59.234 45.455 0.00 0.00 0.00 3.85
428 429 3.459232 TCATGGTATCAGCTCCTTTCG 57.541 47.619 0.00 0.00 0.00 3.46
429 430 5.028549 TCTTCATGGTATCAGCTCCTTTC 57.971 43.478 0.00 0.00 0.00 2.62
430 431 4.685575 GCTCTTCATGGTATCAGCTCCTTT 60.686 45.833 0.00 0.00 0.00 3.11
431 432 3.181456 GCTCTTCATGGTATCAGCTCCTT 60.181 47.826 0.00 0.00 0.00 3.36
432 433 2.368221 GCTCTTCATGGTATCAGCTCCT 59.632 50.000 0.00 0.00 0.00 3.69
433 434 2.103771 TGCTCTTCATGGTATCAGCTCC 59.896 50.000 0.00 0.00 0.00 4.70
434 435 3.129871 GTGCTCTTCATGGTATCAGCTC 58.870 50.000 0.00 0.00 0.00 4.09
435 436 2.482664 CGTGCTCTTCATGGTATCAGCT 60.483 50.000 0.00 0.00 0.00 4.24
436 437 1.863454 CGTGCTCTTCATGGTATCAGC 59.137 52.381 0.00 0.00 0.00 4.26
437 438 2.477825 CCGTGCTCTTCATGGTATCAG 58.522 52.381 0.00 0.00 45.01 2.90
438 439 2.602257 CCGTGCTCTTCATGGTATCA 57.398 50.000 0.00 0.00 45.01 2.15
444 445 1.728971 GTGTTCTCCGTGCTCTTCATG 59.271 52.381 0.00 0.00 0.00 3.07
445 446 1.670087 CGTGTTCTCCGTGCTCTTCAT 60.670 52.381 0.00 0.00 0.00 2.57
446 447 0.318699 CGTGTTCTCCGTGCTCTTCA 60.319 55.000 0.00 0.00 0.00 3.02
447 448 0.039437 TCGTGTTCTCCGTGCTCTTC 60.039 55.000 0.00 0.00 0.00 2.87
448 449 0.039074 CTCGTGTTCTCCGTGCTCTT 60.039 55.000 0.00 0.00 0.00 2.85
449 450 1.581954 CTCGTGTTCTCCGTGCTCT 59.418 57.895 0.00 0.00 0.00 4.09
450 451 1.444553 CCTCGTGTTCTCCGTGCTC 60.445 63.158 0.00 0.00 0.00 4.26
451 452 2.651361 CCTCGTGTTCTCCGTGCT 59.349 61.111 0.00 0.00 0.00 4.40
452 453 2.432628 CCCTCGTGTTCTCCGTGC 60.433 66.667 0.00 0.00 0.00 5.34
453 454 2.261671 CCCCTCGTGTTCTCCGTG 59.738 66.667 0.00 0.00 0.00 4.94
454 455 2.995574 CCCCCTCGTGTTCTCCGT 60.996 66.667 0.00 0.00 0.00 4.69
455 456 1.823169 TTTCCCCCTCGTGTTCTCCG 61.823 60.000 0.00 0.00 0.00 4.63
456 457 0.399075 TTTTCCCCCTCGTGTTCTCC 59.601 55.000 0.00 0.00 0.00 3.71
457 458 1.520494 GTTTTCCCCCTCGTGTTCTC 58.480 55.000 0.00 0.00 0.00 2.87
458 459 0.250166 CGTTTTCCCCCTCGTGTTCT 60.250 55.000 0.00 0.00 0.00 3.01
459 460 0.249996 TCGTTTTCCCCCTCGTGTTC 60.250 55.000 0.00 0.00 0.00 3.18
460 461 0.250166 CTCGTTTTCCCCCTCGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
461 462 1.370064 CTCGTTTTCCCCCTCGTGT 59.630 57.895 0.00 0.00 0.00 4.49
462 463 1.375523 CCTCGTTTTCCCCCTCGTG 60.376 63.158 0.00 0.00 0.00 4.35
463 464 2.590114 CCCTCGTTTTCCCCCTCGT 61.590 63.158 0.00 0.00 0.00 4.18
464 465 2.267961 CCCTCGTTTTCCCCCTCG 59.732 66.667 0.00 0.00 0.00 4.63
465 466 1.494716 TTCCCCTCGTTTTCCCCCTC 61.495 60.000 0.00 0.00 0.00 4.30
466 467 0.849540 ATTCCCCTCGTTTTCCCCCT 60.850 55.000 0.00 0.00 0.00 4.79
467 468 0.395311 GATTCCCCTCGTTTTCCCCC 60.395 60.000 0.00 0.00 0.00 5.40
468 469 0.330267 TGATTCCCCTCGTTTTCCCC 59.670 55.000 0.00 0.00 0.00 4.81
469 470 1.460504 GTGATTCCCCTCGTTTTCCC 58.539 55.000 0.00 0.00 0.00 3.97
470 471 1.084289 CGTGATTCCCCTCGTTTTCC 58.916 55.000 0.00 0.00 0.00 3.13
471 472 2.000447 CTCGTGATTCCCCTCGTTTTC 59.000 52.381 0.00 0.00 0.00 2.29
472 473 1.338769 CCTCGTGATTCCCCTCGTTTT 60.339 52.381 0.00 0.00 0.00 2.43
473 474 0.249398 CCTCGTGATTCCCCTCGTTT 59.751 55.000 0.00 0.00 0.00 3.60
474 475 1.614241 CCCTCGTGATTCCCCTCGTT 61.614 60.000 0.00 0.00 0.00 3.85
475 476 2.058595 CCCTCGTGATTCCCCTCGT 61.059 63.158 0.00 0.00 0.00 4.18
476 477 2.797278 CCCCTCGTGATTCCCCTCG 61.797 68.421 0.00 0.00 0.00 4.63
477 478 0.981277 TTCCCCTCGTGATTCCCCTC 60.981 60.000 0.00 0.00 0.00 4.30
478 479 0.549169 TTTCCCCTCGTGATTCCCCT 60.549 55.000 0.00 0.00 0.00 4.79
479 480 0.393944 GTTTCCCCTCGTGATTCCCC 60.394 60.000 0.00 0.00 0.00 4.81
480 481 0.326927 TGTTTCCCCTCGTGATTCCC 59.673 55.000 0.00 0.00 0.00 3.97
481 482 1.271163 TGTGTTTCCCCTCGTGATTCC 60.271 52.381 0.00 0.00 0.00 3.01
482 483 2.178912 TGTGTTTCCCCTCGTGATTC 57.821 50.000 0.00 0.00 0.00 2.52
483 484 2.105821 TCTTGTGTTTCCCCTCGTGATT 59.894 45.455 0.00 0.00 0.00 2.57
484 485 1.697432 TCTTGTGTTTCCCCTCGTGAT 59.303 47.619 0.00 0.00 0.00 3.06
485 486 1.124780 TCTTGTGTTTCCCCTCGTGA 58.875 50.000 0.00 0.00 0.00 4.35
486 487 1.961793 TTCTTGTGTTTCCCCTCGTG 58.038 50.000 0.00 0.00 0.00 4.35
487 488 2.721425 TTTCTTGTGTTTCCCCTCGT 57.279 45.000 0.00 0.00 0.00 4.18
488 489 3.129638 TGTTTTTCTTGTGTTTCCCCTCG 59.870 43.478 0.00 0.00 0.00 4.63
489 490 4.159693 AGTGTTTTTCTTGTGTTTCCCCTC 59.840 41.667 0.00 0.00 0.00 4.30
490 491 4.093743 AGTGTTTTTCTTGTGTTTCCCCT 58.906 39.130 0.00 0.00 0.00 4.79
491 492 4.465632 AGTGTTTTTCTTGTGTTTCCCC 57.534 40.909 0.00 0.00 0.00 4.81
492 493 7.148540 GGTTTTAGTGTTTTTCTTGTGTTTCCC 60.149 37.037 0.00 0.00 0.00 3.97
493 494 7.385478 TGGTTTTAGTGTTTTTCTTGTGTTTCC 59.615 33.333 0.00 0.00 0.00 3.13
494 495 8.300495 TGGTTTTAGTGTTTTTCTTGTGTTTC 57.700 30.769 0.00 0.00 0.00 2.78
495 496 8.552865 GTTGGTTTTAGTGTTTTTCTTGTGTTT 58.447 29.630 0.00 0.00 0.00 2.83
496 497 7.711339 TGTTGGTTTTAGTGTTTTTCTTGTGTT 59.289 29.630 0.00 0.00 0.00 3.32
497 498 7.210873 TGTTGGTTTTAGTGTTTTTCTTGTGT 58.789 30.769 0.00 0.00 0.00 3.72
498 499 7.644986 TGTTGGTTTTAGTGTTTTTCTTGTG 57.355 32.000 0.00 0.00 0.00 3.33
499 500 8.145122 TCTTGTTGGTTTTAGTGTTTTTCTTGT 58.855 29.630 0.00 0.00 0.00 3.16
500 501 8.527567 TCTTGTTGGTTTTAGTGTTTTTCTTG 57.472 30.769 0.00 0.00 0.00 3.02
504 505 9.541143 CCATATCTTGTTGGTTTTAGTGTTTTT 57.459 29.630 0.00 0.00 0.00 1.94
505 506 8.700973 ACCATATCTTGTTGGTTTTAGTGTTTT 58.299 29.630 0.00 0.00 43.73 2.43
506 507 8.245195 ACCATATCTTGTTGGTTTTAGTGTTT 57.755 30.769 0.00 0.00 43.73 2.83
507 508 7.504238 TGACCATATCTTGTTGGTTTTAGTGTT 59.496 33.333 0.00 0.00 46.14 3.32
508 509 7.001674 TGACCATATCTTGTTGGTTTTAGTGT 58.998 34.615 0.00 0.00 46.14 3.55
509 510 7.040755 TGTGACCATATCTTGTTGGTTTTAGTG 60.041 37.037 0.00 0.00 46.14 2.74
510 511 7.001674 TGTGACCATATCTTGTTGGTTTTAGT 58.998 34.615 0.00 0.00 46.14 2.24
511 512 7.040755 TGTGTGACCATATCTTGTTGGTTTTAG 60.041 37.037 0.00 0.00 46.14 1.85
512 513 6.773200 TGTGTGACCATATCTTGTTGGTTTTA 59.227 34.615 0.00 0.00 46.14 1.52
513 514 5.596361 TGTGTGACCATATCTTGTTGGTTTT 59.404 36.000 0.00 0.00 46.14 2.43
514 515 5.136828 TGTGTGACCATATCTTGTTGGTTT 58.863 37.500 0.00 0.00 46.14 3.27
515 516 4.724399 TGTGTGACCATATCTTGTTGGTT 58.276 39.130 0.00 0.00 46.14 3.67
517 518 6.513884 GCATATGTGTGACCATATCTTGTTGG 60.514 42.308 4.29 0.00 36.18 3.77
518 519 6.261603 AGCATATGTGTGACCATATCTTGTTG 59.738 38.462 4.29 0.00 36.18 3.33
519 520 6.359804 AGCATATGTGTGACCATATCTTGTT 58.640 36.000 4.29 0.00 36.18 2.83
520 521 5.933617 AGCATATGTGTGACCATATCTTGT 58.066 37.500 4.29 0.00 36.18 3.16
521 522 7.381323 TCTAGCATATGTGTGACCATATCTTG 58.619 38.462 4.29 6.32 36.18 3.02
522 523 7.544804 TCTAGCATATGTGTGACCATATCTT 57.455 36.000 4.29 0.74 36.18 2.40
523 524 7.618907 AGATCTAGCATATGTGTGACCATATCT 59.381 37.037 4.29 7.11 36.18 1.98
524 525 7.780064 AGATCTAGCATATGTGTGACCATATC 58.220 38.462 4.29 0.00 36.18 1.63
525 526 7.730672 AGATCTAGCATATGTGTGACCATAT 57.269 36.000 4.29 2.14 38.30 1.78
526 527 7.544804 AAGATCTAGCATATGTGTGACCATA 57.455 36.000 4.29 0.00 0.00 2.74
527 528 6.430962 AAGATCTAGCATATGTGTGACCAT 57.569 37.500 4.29 0.00 0.00 3.55
528 529 5.507985 CGAAGATCTAGCATATGTGTGACCA 60.508 44.000 4.29 0.00 0.00 4.02
529 530 4.920340 CGAAGATCTAGCATATGTGTGACC 59.080 45.833 4.29 0.00 0.00 4.02
530 531 5.763088 TCGAAGATCTAGCATATGTGTGAC 58.237 41.667 4.29 0.00 0.00 3.67
531 532 6.391227 TTCGAAGATCTAGCATATGTGTGA 57.609 37.500 4.29 0.73 35.04 3.58
532 533 6.476706 TGTTTCGAAGATCTAGCATATGTGTG 59.523 38.462 4.29 0.00 35.04 3.82
533 534 6.477033 GTGTTTCGAAGATCTAGCATATGTGT 59.523 38.462 4.29 0.00 35.04 3.72
534 535 6.476706 TGTGTTTCGAAGATCTAGCATATGTG 59.523 38.462 4.29 0.00 35.04 3.21
535 536 6.573434 TGTGTTTCGAAGATCTAGCATATGT 58.427 36.000 4.29 0.00 35.04 2.29
536 537 7.468922 TTGTGTTTCGAAGATCTAGCATATG 57.531 36.000 0.00 0.00 35.04 1.78
537 538 7.981789 TCTTTGTGTTTCGAAGATCTAGCATAT 59.018 33.333 0.00 0.00 40.48 1.78
538 539 7.320399 TCTTTGTGTTTCGAAGATCTAGCATA 58.680 34.615 0.00 0.00 40.48 3.14
539 540 6.166279 TCTTTGTGTTTCGAAGATCTAGCAT 58.834 36.000 0.00 0.00 40.48 3.79
540 541 5.538118 TCTTTGTGTTTCGAAGATCTAGCA 58.462 37.500 0.00 0.00 40.48 3.49
541 542 5.864474 TCTCTTTGTGTTTCGAAGATCTAGC 59.136 40.000 0.00 0.00 43.27 3.42
542 543 9.015577 GTATCTCTTTGTGTTTCGAAGATCTAG 57.984 37.037 0.00 0.00 43.27 2.43
543 544 8.520351 TGTATCTCTTTGTGTTTCGAAGATCTA 58.480 33.333 0.00 0.00 43.27 1.98
544 545 7.378966 TGTATCTCTTTGTGTTTCGAAGATCT 58.621 34.615 0.00 0.00 43.27 2.75
545 546 7.582435 TGTATCTCTTTGTGTTTCGAAGATC 57.418 36.000 0.00 0.00 43.27 2.75
546 547 7.872993 TCTTGTATCTCTTTGTGTTTCGAAGAT 59.127 33.333 0.00 0.00 43.27 2.40
547 548 7.207383 TCTTGTATCTCTTTGTGTTTCGAAGA 58.793 34.615 0.00 0.00 42.39 2.87
548 549 7.408132 TCTTGTATCTCTTTGTGTTTCGAAG 57.592 36.000 0.00 0.00 38.54 3.79
549 550 7.117812 GGATCTTGTATCTCTTTGTGTTTCGAA 59.882 37.037 0.00 0.00 0.00 3.71
550 551 6.590292 GGATCTTGTATCTCTTTGTGTTTCGA 59.410 38.462 0.00 0.00 0.00 3.71
551 552 6.454318 CGGATCTTGTATCTCTTTGTGTTTCG 60.454 42.308 0.00 0.00 0.00 3.46
552 553 6.590292 TCGGATCTTGTATCTCTTTGTGTTTC 59.410 38.462 0.00 0.00 0.00 2.78
553 554 6.464222 TCGGATCTTGTATCTCTTTGTGTTT 58.536 36.000 0.00 0.00 0.00 2.83
554 555 6.037786 TCGGATCTTGTATCTCTTTGTGTT 57.962 37.500 0.00 0.00 0.00 3.32
555 556 5.661056 TCGGATCTTGTATCTCTTTGTGT 57.339 39.130 0.00 0.00 0.00 3.72
556 557 6.201806 GGATTCGGATCTTGTATCTCTTTGTG 59.798 42.308 3.13 0.00 32.66 3.33
557 558 6.127054 TGGATTCGGATCTTGTATCTCTTTGT 60.127 38.462 3.13 0.00 32.66 2.83
558 559 6.283694 TGGATTCGGATCTTGTATCTCTTTG 58.716 40.000 3.13 0.00 32.66 2.77
559 560 6.485830 TGGATTCGGATCTTGTATCTCTTT 57.514 37.500 3.13 0.00 32.66 2.52
560 561 6.127054 TGTTGGATTCGGATCTTGTATCTCTT 60.127 38.462 3.13 0.00 32.66 2.85
561 562 5.363868 TGTTGGATTCGGATCTTGTATCTCT 59.636 40.000 3.13 0.00 32.66 3.10
562 563 5.601662 TGTTGGATTCGGATCTTGTATCTC 58.398 41.667 3.13 0.00 32.66 2.75
563 564 5.614324 TGTTGGATTCGGATCTTGTATCT 57.386 39.130 3.13 0.00 32.66 1.98
564 565 6.238484 CCTTTGTTGGATTCGGATCTTGTATC 60.238 42.308 3.13 0.00 32.66 2.24
565 566 5.590259 CCTTTGTTGGATTCGGATCTTGTAT 59.410 40.000 3.13 0.00 32.66 2.29
566 567 4.941263 CCTTTGTTGGATTCGGATCTTGTA 59.059 41.667 3.13 0.00 32.66 2.41
567 568 3.758554 CCTTTGTTGGATTCGGATCTTGT 59.241 43.478 3.13 0.00 32.66 3.16
568 569 4.009675 TCCTTTGTTGGATTCGGATCTTG 58.990 43.478 3.13 0.00 32.66 3.02
569 570 4.010349 GTCCTTTGTTGGATTCGGATCTT 58.990 43.478 3.13 0.00 38.52 2.40
570 571 3.610911 GTCCTTTGTTGGATTCGGATCT 58.389 45.455 3.13 0.00 38.52 2.75
571 572 2.351726 CGTCCTTTGTTGGATTCGGATC 59.648 50.000 0.00 0.00 38.52 3.36
572 573 2.027561 TCGTCCTTTGTTGGATTCGGAT 60.028 45.455 0.00 0.00 38.52 4.18
573 574 1.345089 TCGTCCTTTGTTGGATTCGGA 59.655 47.619 0.00 0.00 38.52 4.55
574 575 1.803334 TCGTCCTTTGTTGGATTCGG 58.197 50.000 0.00 0.00 38.52 4.30
575 576 3.930229 TGTATCGTCCTTTGTTGGATTCG 59.070 43.478 0.00 0.00 38.52 3.34
576 577 6.202954 CCTATGTATCGTCCTTTGTTGGATTC 59.797 42.308 0.00 0.00 38.52 2.52
577 578 6.055588 CCTATGTATCGTCCTTTGTTGGATT 58.944 40.000 0.00 0.00 38.52 3.01
578 579 5.454755 CCCTATGTATCGTCCTTTGTTGGAT 60.455 44.000 0.00 0.00 38.52 3.41
579 580 4.141801 CCCTATGTATCGTCCTTTGTTGGA 60.142 45.833 0.00 0.00 0.00 3.53
580 581 4.127171 CCCTATGTATCGTCCTTTGTTGG 58.873 47.826 0.00 0.00 0.00 3.77
581 582 4.766375 ACCCTATGTATCGTCCTTTGTTG 58.234 43.478 0.00 0.00 0.00 3.33
582 583 6.343703 GTTACCCTATGTATCGTCCTTTGTT 58.656 40.000 0.00 0.00 0.00 2.83
583 584 5.163374 GGTTACCCTATGTATCGTCCTTTGT 60.163 44.000 0.00 0.00 0.00 2.83
584 585 5.295152 GGTTACCCTATGTATCGTCCTTTG 58.705 45.833 0.00 0.00 0.00 2.77
585 586 4.038402 CGGTTACCCTATGTATCGTCCTTT 59.962 45.833 0.00 0.00 0.00 3.11
586 587 3.571401 CGGTTACCCTATGTATCGTCCTT 59.429 47.826 0.00 0.00 0.00 3.36
587 588 3.152341 CGGTTACCCTATGTATCGTCCT 58.848 50.000 0.00 0.00 0.00 3.85
588 589 2.229784 CCGGTTACCCTATGTATCGTCC 59.770 54.545 0.00 0.00 0.00 4.79
589 590 2.887152 ACCGGTTACCCTATGTATCGTC 59.113 50.000 0.00 0.00 0.00 4.20
590 591 2.949447 ACCGGTTACCCTATGTATCGT 58.051 47.619 0.00 0.00 0.00 3.73
591 592 3.571401 AGAACCGGTTACCCTATGTATCG 59.429 47.826 22.33 0.00 0.00 2.92
592 593 5.303845 AGAAGAACCGGTTACCCTATGTATC 59.696 44.000 22.33 7.36 0.00 2.24
593 594 5.214293 AGAAGAACCGGTTACCCTATGTAT 58.786 41.667 22.33 0.00 0.00 2.29
594 595 4.613437 AGAAGAACCGGTTACCCTATGTA 58.387 43.478 22.33 0.00 0.00 2.29
595 596 3.447950 AGAAGAACCGGTTACCCTATGT 58.552 45.455 22.33 0.00 0.00 2.29
596 597 3.181468 GGAGAAGAACCGGTTACCCTATG 60.181 52.174 22.33 0.00 0.00 2.23
597 598 3.036819 GGAGAAGAACCGGTTACCCTAT 58.963 50.000 22.33 5.87 0.00 2.57
598 599 2.460669 GGAGAAGAACCGGTTACCCTA 58.539 52.381 22.33 0.00 0.00 3.53
599 600 1.273759 GGAGAAGAACCGGTTACCCT 58.726 55.000 22.33 16.58 0.00 4.34
600 601 0.108472 CGGAGAAGAACCGGTTACCC 60.108 60.000 22.33 15.12 45.65 3.69
601 602 3.430779 CGGAGAAGAACCGGTTACC 57.569 57.895 22.33 16.56 45.65 2.85
616 617 1.186200 CATCAAGACCTCCTCACGGA 58.814 55.000 0.00 0.00 37.82 4.69
617 618 0.898320 ACATCAAGACCTCCTCACGG 59.102 55.000 0.00 0.00 0.00 4.94
618 619 1.821753 AGACATCAAGACCTCCTCACG 59.178 52.381 0.00 0.00 0.00 4.35
619 620 3.513515 AGAAGACATCAAGACCTCCTCAC 59.486 47.826 0.00 0.00 0.00 3.51
620 621 3.766591 GAGAAGACATCAAGACCTCCTCA 59.233 47.826 0.00 0.00 0.00 3.86
621 622 3.132111 GGAGAAGACATCAAGACCTCCTC 59.868 52.174 0.00 0.00 36.64 3.71
622 623 3.103742 GGAGAAGACATCAAGACCTCCT 58.896 50.000 0.00 0.00 36.64 3.69
623 624 2.159170 CGGAGAAGACATCAAGACCTCC 60.159 54.545 0.00 0.00 36.33 4.30
624 625 2.494073 ACGGAGAAGACATCAAGACCTC 59.506 50.000 0.00 0.00 0.00 3.85
625 626 2.232452 CACGGAGAAGACATCAAGACCT 59.768 50.000 0.00 0.00 0.00 3.85
626 627 2.231478 TCACGGAGAAGACATCAAGACC 59.769 50.000 0.00 0.00 0.00 3.85
627 628 3.506810 CTCACGGAGAAGACATCAAGAC 58.493 50.000 0.00 0.00 0.00 3.01
628 629 2.493675 CCTCACGGAGAAGACATCAAGA 59.506 50.000 2.84 0.00 0.00 3.02
629 630 2.493675 TCCTCACGGAGAAGACATCAAG 59.506 50.000 2.84 0.00 33.30 3.02
630 631 2.525368 TCCTCACGGAGAAGACATCAA 58.475 47.619 2.84 0.00 33.30 2.57
631 632 2.215942 TCCTCACGGAGAAGACATCA 57.784 50.000 2.84 0.00 33.30 3.07
641 642 1.203013 TCTTCAAGACCTCCTCACGGA 60.203 52.381 0.00 0.00 37.82 4.69
642 643 1.067495 GTCTTCAAGACCTCCTCACGG 60.067 57.143 6.23 0.00 39.28 4.94
643 644 1.889829 AGTCTTCAAGACCTCCTCACG 59.110 52.381 14.27 0.00 46.18 4.35
644 645 5.470047 TTTAGTCTTCAAGACCTCCTCAC 57.530 43.478 14.27 0.00 46.18 3.51
645 646 5.780282 TCATTTAGTCTTCAAGACCTCCTCA 59.220 40.000 14.27 0.00 46.18 3.86
646 647 6.103330 GTCATTTAGTCTTCAAGACCTCCTC 58.897 44.000 14.27 0.00 46.18 3.71
647 648 5.336849 CGTCATTTAGTCTTCAAGACCTCCT 60.337 44.000 14.27 0.00 46.18 3.69
648 649 4.865365 CGTCATTTAGTCTTCAAGACCTCC 59.135 45.833 14.27 0.00 46.18 4.30
649 650 4.327627 GCGTCATTTAGTCTTCAAGACCTC 59.672 45.833 14.27 0.00 46.18 3.85
650 651 4.246458 GCGTCATTTAGTCTTCAAGACCT 58.754 43.478 14.27 4.51 46.18 3.85
651 652 3.994392 TGCGTCATTTAGTCTTCAAGACC 59.006 43.478 14.27 0.00 46.18 3.85
652 653 5.591643 TTGCGTCATTTAGTCTTCAAGAC 57.408 39.130 9.78 9.78 45.38 3.01
653 654 6.260050 AGTTTTGCGTCATTTAGTCTTCAAGA 59.740 34.615 0.00 0.00 0.00 3.02
654 655 6.430451 AGTTTTGCGTCATTTAGTCTTCAAG 58.570 36.000 0.00 0.00 0.00 3.02
655 656 6.371809 AGTTTTGCGTCATTTAGTCTTCAA 57.628 33.333 0.00 0.00 0.00 2.69
656 657 6.073440 GGTAGTTTTGCGTCATTTAGTCTTCA 60.073 38.462 0.00 0.00 0.00 3.02
657 658 6.073440 TGGTAGTTTTGCGTCATTTAGTCTTC 60.073 38.462 0.00 0.00 0.00 2.87
658 659 5.761234 TGGTAGTTTTGCGTCATTTAGTCTT 59.239 36.000 0.00 0.00 0.00 3.01
659 660 5.178809 GTGGTAGTTTTGCGTCATTTAGTCT 59.821 40.000 0.00 0.00 0.00 3.24
660 661 5.049954 TGTGGTAGTTTTGCGTCATTTAGTC 60.050 40.000 0.00 0.00 0.00 2.59
661 662 4.817464 TGTGGTAGTTTTGCGTCATTTAGT 59.183 37.500 0.00 0.00 0.00 2.24
662 663 5.351233 TGTGGTAGTTTTGCGTCATTTAG 57.649 39.130 0.00 0.00 0.00 1.85
674 675 2.158385 TCTGCCCCAAATGTGGTAGTTT 60.158 45.455 0.00 0.00 44.30 2.66
742 743 1.064758 TCACATACCTGCCCCAATGTC 60.065 52.381 0.00 0.00 30.32 3.06
793 794 3.782443 GGGCCGACCGGTCAGAAT 61.782 66.667 32.80 0.00 42.75 2.40
813 814 0.249120 TCGCCATGTCGACCTGAAAT 59.751 50.000 20.73 0.84 33.02 2.17
826 827 3.144871 TCCATCGTCCGTCGCCAT 61.145 61.111 0.00 0.00 39.67 4.40
831 832 0.247974 CTACGTGTCCATCGTCCGTC 60.248 60.000 0.00 0.00 41.72 4.79
901 902 1.738350 CGAGCGAGGAGAGTGTTTCTA 59.262 52.381 0.00 0.00 35.87 2.10
909 910 2.407210 GTGAGCGAGCGAGGAGAG 59.593 66.667 0.00 0.00 0.00 3.20
977 978 3.459063 GCGGCGAGGTAGAACCCT 61.459 66.667 12.98 0.00 39.75 4.34
1055 1056 4.692625 CAGAAAAATGATGACTGACCTCGT 59.307 41.667 0.00 0.00 0.00 4.18
1092 1093 4.402616 AATCCCCAAATCAGAGAAACCA 57.597 40.909 0.00 0.00 0.00 3.67
1190 1191 1.347320 CACTTCGAGTCGTAAAGGGC 58.653 55.000 13.12 0.00 0.00 5.19
1205 1206 1.742308 TCAGCTAACCCTTCCCACTT 58.258 50.000 0.00 0.00 0.00 3.16
1207 1208 1.408822 CCATCAGCTAACCCTTCCCAC 60.409 57.143 0.00 0.00 0.00 4.61
1242 1243 4.202101 CGGCAATGGCTCCACATTTATAAA 60.202 41.667 5.02 0.00 38.94 1.40
1245 1246 1.682854 CGGCAATGGCTCCACATTTAT 59.317 47.619 5.02 0.00 38.94 1.40
1323 1324 3.565482 CACAGGTAAATCACACACTTGCT 59.435 43.478 0.00 0.00 0.00 3.91
1327 1328 3.492102 AGCACAGGTAAATCACACACT 57.508 42.857 0.00 0.00 0.00 3.55
1468 1470 1.202734 AGTGATGATGGCCAATCTCCG 60.203 52.381 10.96 0.00 36.15 4.63
1500 1502 7.233632 TCCATACATCTCCCATAATTTTCCAG 58.766 38.462 0.00 0.00 0.00 3.86
1666 1668 2.057137 TTGCCTTCAGAGCAAGTGTT 57.943 45.000 0.00 0.00 44.95 3.32
1761 1763 0.798776 GATCCTCAACACCTTGTGCG 59.201 55.000 0.00 0.00 36.98 5.34
1765 1767 1.815003 GCCTTGATCCTCAACACCTTG 59.185 52.381 0.00 0.00 32.21 3.61
1826 1828 6.127535 ACCAAATCTGCAATCATTAACTCCAG 60.128 38.462 0.00 0.00 0.00 3.86
1953 1956 9.624697 TTGAAACACTCATAATTGAACAATAGC 57.375 29.630 0.37 0.00 32.78 2.97
2068 2071 4.247267 TCGAGTCGACACCTTTACAAAT 57.753 40.909 19.50 0.00 0.00 2.32
2087 2090 2.413837 ACAAAAAGGGTCTCGACATCG 58.586 47.619 0.00 0.00 41.45 3.84
2183 2186 2.884639 GCAGTACTGTGGTGTCCAATTT 59.115 45.455 23.44 0.00 34.18 1.82
2245 2248 5.238432 AGTTTGAACTCGTGACAATTATGCA 59.762 36.000 0.00 0.00 32.86 3.96
2252 2255 5.062934 CACTTACAGTTTGAACTCGTGACAA 59.937 40.000 0.00 0.00 37.08 3.18
2259 2262 8.704234 CACTAGATTCACTTACAGTTTGAACTC 58.296 37.037 0.00 0.00 37.08 3.01
2269 2272 3.055385 GGGTGGCACTAGATTCACTTACA 60.055 47.826 18.45 0.00 0.00 2.41
2270 2273 3.532542 GGGTGGCACTAGATTCACTTAC 58.467 50.000 18.45 0.00 0.00 2.34
2271 2274 2.504175 GGGGTGGCACTAGATTCACTTA 59.496 50.000 18.45 0.00 0.00 2.24
2272 2275 1.282157 GGGGTGGCACTAGATTCACTT 59.718 52.381 18.45 0.00 0.00 3.16
2273 2276 0.912486 GGGGTGGCACTAGATTCACT 59.088 55.000 18.45 0.00 0.00 3.41
2274 2277 0.912486 AGGGGTGGCACTAGATTCAC 59.088 55.000 18.45 0.00 0.00 3.18
2275 2278 2.292918 ACTAGGGGTGGCACTAGATTCA 60.293 50.000 18.45 0.00 39.16 2.57
2276 2279 2.399580 ACTAGGGGTGGCACTAGATTC 58.600 52.381 18.45 0.00 39.16 2.52
2277 2280 2.505819 CAACTAGGGGTGGCACTAGATT 59.494 50.000 18.45 6.11 39.16 2.40
2278 2281 2.119495 CAACTAGGGGTGGCACTAGAT 58.881 52.381 18.45 3.55 39.16 1.98
2279 2282 1.568504 CAACTAGGGGTGGCACTAGA 58.431 55.000 18.45 0.00 39.16 2.43
2280 2283 0.541863 CCAACTAGGGGTGGCACTAG 59.458 60.000 18.45 13.59 41.83 2.57
2281 2284 0.178885 ACCAACTAGGGGTGGCACTA 60.179 55.000 18.45 0.98 43.89 2.74
2282 2285 1.065997 AACCAACTAGGGGTGGCACT 61.066 55.000 18.45 0.00 43.89 4.40
2283 2286 0.178973 AAACCAACTAGGGGTGGCAC 60.179 55.000 9.70 9.70 43.89 5.01
2284 2287 0.558712 AAAACCAACTAGGGGTGGCA 59.441 50.000 8.90 0.00 43.89 4.92
2285 2288 0.966179 CAAAACCAACTAGGGGTGGC 59.034 55.000 8.90 0.00 43.89 5.01
2286 2289 1.146152 TCCAAAACCAACTAGGGGTGG 59.854 52.381 8.90 8.22 43.89 4.61
2287 2290 2.158519 ACTCCAAAACCAACTAGGGGTG 60.159 50.000 8.90 0.00 43.89 4.61
2288 2291 2.141067 ACTCCAAAACCAACTAGGGGT 58.859 47.619 2.70 2.70 43.89 4.95
2289 2292 2.971901 ACTCCAAAACCAACTAGGGG 57.028 50.000 0.00 0.00 43.89 4.79
2290 2293 5.414765 GTCAATACTCCAAAACCAACTAGGG 59.585 44.000 0.00 0.00 43.89 3.53
2291 2294 5.121768 CGTCAATACTCCAAAACCAACTAGG 59.878 44.000 0.00 0.00 45.67 3.02
2292 2295 5.699458 ACGTCAATACTCCAAAACCAACTAG 59.301 40.000 0.00 0.00 0.00 2.57
2293 2296 5.613329 ACGTCAATACTCCAAAACCAACTA 58.387 37.500 0.00 0.00 0.00 2.24
2294 2297 4.457466 ACGTCAATACTCCAAAACCAACT 58.543 39.130 0.00 0.00 0.00 3.16
2295 2298 4.823790 ACGTCAATACTCCAAAACCAAC 57.176 40.909 0.00 0.00 0.00 3.77
2296 2299 5.366460 TGTACGTCAATACTCCAAAACCAA 58.634 37.500 0.00 0.00 0.00 3.67
2297 2300 4.958509 TGTACGTCAATACTCCAAAACCA 58.041 39.130 0.00 0.00 0.00 3.67
2298 2301 4.992951 ACTGTACGTCAATACTCCAAAACC 59.007 41.667 0.00 0.00 0.00 3.27
2299 2302 6.018507 ACAACTGTACGTCAATACTCCAAAAC 60.019 38.462 0.00 0.00 0.00 2.43
2300 2303 6.050432 ACAACTGTACGTCAATACTCCAAAA 58.950 36.000 0.00 0.00 0.00 2.44
2301 2304 5.603596 ACAACTGTACGTCAATACTCCAAA 58.396 37.500 0.00 0.00 0.00 3.28
2302 2305 5.204409 ACAACTGTACGTCAATACTCCAA 57.796 39.130 0.00 0.00 0.00 3.53
2303 2306 4.278919 TGACAACTGTACGTCAATACTCCA 59.721 41.667 9.72 0.00 39.14 3.86
2304 2307 4.620184 GTGACAACTGTACGTCAATACTCC 59.380 45.833 12.81 0.00 43.40 3.85
2305 2308 5.217393 TGTGACAACTGTACGTCAATACTC 58.783 41.667 12.81 3.76 43.40 2.59
2306 2309 5.190992 TGTGACAACTGTACGTCAATACT 57.809 39.130 12.81 0.00 43.40 2.12
2307 2310 4.143389 GCTGTGACAACTGTACGTCAATAC 60.143 45.833 12.81 4.32 43.40 1.89
2308 2311 3.985279 GCTGTGACAACTGTACGTCAATA 59.015 43.478 12.81 6.49 43.40 1.90
2309 2312 2.800544 GCTGTGACAACTGTACGTCAAT 59.199 45.455 12.81 0.00 43.40 2.57
2310 2313 2.198406 GCTGTGACAACTGTACGTCAA 58.802 47.619 12.81 5.35 43.40 3.18
2311 2314 1.135333 TGCTGTGACAACTGTACGTCA 59.865 47.619 8.44 8.44 39.77 4.35
2779 2788 4.804139 ACACAGCGGAGACTTTAATTATCG 59.196 41.667 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.