Multiple sequence alignment - TraesCS1A01G177200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G177200 chr1A 100.000 2634 0 0 1 2634 319735649 319733016 0.000000e+00 4865.0
1 TraesCS1A01G177200 chr1A 94.286 665 16 3 1868 2511 519374905 519374242 0.000000e+00 998.0
2 TraesCS1A01G177200 chr1A 94.419 645 18 7 1868 2511 582807815 582808442 0.000000e+00 976.0
3 TraesCS1A01G177200 chr1A 94.281 647 18 9 1868 2511 257589563 257588933 0.000000e+00 972.0
4 TraesCS1A01G177200 chr6D 95.614 1824 59 9 1 1810 451600157 451598341 0.000000e+00 2905.0
5 TraesCS1A01G177200 chr6D 95.609 1822 60 8 1 1810 459129163 459130976 0.000000e+00 2904.0
6 TraesCS1A01G177200 chr6D 95.345 1826 64 9 1 1810 397854480 397852660 0.000000e+00 2881.0
7 TraesCS1A01G177200 chr6D 94.797 1826 63 12 1 1810 133729575 133727766 0.000000e+00 2817.0
8 TraesCS1A01G177200 chr6D 94.743 1826 67 13 1 1810 386036450 386034638 0.000000e+00 2813.0
9 TraesCS1A01G177200 chr6D 92.822 1017 43 12 1 992 434399969 434400980 0.000000e+00 1447.0
10 TraesCS1A01G177200 chr6D 87.190 242 10 2 1868 2088 59274866 59274625 3.360000e-64 255.0
11 TraesCS1A01G177200 chr3D 95.450 1824 59 11 1 1810 337615067 337616880 0.000000e+00 2887.0
12 TraesCS1A01G177200 chr3D 94.346 955 35 6 1 943 368499083 368498136 0.000000e+00 1447.0
13 TraesCS1A01G177200 chr3D 94.700 717 19 6 1 701 64047589 64048302 0.000000e+00 1096.0
14 TraesCS1A01G177200 chr3D 91.971 685 14 3 1868 2511 18705788 18705104 0.000000e+00 922.0
15 TraesCS1A01G177200 chr7D 95.235 1826 64 10 1 1810 421675274 421677092 0.000000e+00 2868.0
16 TraesCS1A01G177200 chr7D 94.809 944 31 6 1 930 216800350 216799411 0.000000e+00 1456.0
17 TraesCS1A01G177200 chr2D 95.181 1826 67 10 1 1810 54047566 54045746 0.000000e+00 2865.0
18 TraesCS1A01G177200 chr1D 95.071 1826 64 17 1 1810 43033309 43035124 0.000000e+00 2850.0
19 TraesCS1A01G177200 chr1D 91.971 685 13 4 1868 2511 361005962 361006645 0.000000e+00 922.0
20 TraesCS1A01G177200 chr1D 90.485 557 11 4 1868 2382 466980046 466979490 0.000000e+00 697.0
21 TraesCS1A01G177200 chr5D 94.910 1827 69 11 1 1810 426130335 426132154 0.000000e+00 2837.0
22 TraesCS1A01G177200 chr5D 91.241 685 15 7 1868 2511 56214802 56215482 0.000000e+00 891.0
23 TraesCS1A01G177200 chr5D 86.569 685 39 7 1868 2511 391882009 391881337 0.000000e+00 706.0
24 TraesCS1A01G177200 chr5D 90.288 556 10 4 1868 2382 215552789 215552237 0.000000e+00 688.0
25 TraesCS1A01G177200 chr5D 86.831 243 7 10 1868 2085 306884359 306884117 5.630000e-62 248.0
26 TraesCS1A01G177200 chr4A 94.797 1826 70 12 1 1810 45631387 45633203 0.000000e+00 2822.0
27 TraesCS1A01G177200 chr4A 94.887 665 12 3 1868 2511 45633211 45633874 0.000000e+00 1020.0
28 TraesCS1A01G177200 chr4A 96.724 580 16 2 1933 2511 246821249 246820672 0.000000e+00 963.0
29 TraesCS1A01G177200 chr4D 94.286 945 34 9 1 930 329901323 329902262 0.000000e+00 1428.0
30 TraesCS1A01G177200 chr4D 92.117 685 13 4 1868 2511 67958611 67957927 0.000000e+00 928.0
31 TraesCS1A01G177200 chr4D 82.727 110 15 4 2520 2628 486208880 486208774 7.760000e-16 95.3
32 TraesCS1A01G177200 chr2A 93.844 666 17 5 1868 2511 677263838 677264501 0.000000e+00 981.0
33 TraesCS1A01G177200 chr2A 96.897 580 17 1 1933 2511 87341524 87342103 0.000000e+00 970.0
34 TraesCS1A01G177200 chr6A 96.599 588 16 4 1928 2511 484782762 484782175 0.000000e+00 972.0
35 TraesCS1A01G177200 chr6A 96.724 580 16 3 1933 2511 468226164 468226741 0.000000e+00 963.0
36 TraesCS1A01G177200 chr6A 95.968 124 5 0 2511 2634 78998950 78998827 4.450000e-48 202.0
37 TraesCS1A01G177200 chr5A 93.496 123 8 0 2512 2634 485722642 485722520 1.610000e-42 183.0
38 TraesCS1A01G177200 chr4B 83.051 118 15 5 2512 2627 180205877 180205991 4.640000e-18 102.0
39 TraesCS1A01G177200 chr2B 81.667 120 17 5 2510 2627 502106345 502106229 7.760000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G177200 chr1A 319733016 319735649 2633 True 4865 4865 100.000 1 2634 1 chr1A.!!$R2 2633
1 TraesCS1A01G177200 chr1A 519374242 519374905 663 True 998 998 94.286 1868 2511 1 chr1A.!!$R3 643
2 TraesCS1A01G177200 chr1A 582807815 582808442 627 False 976 976 94.419 1868 2511 1 chr1A.!!$F1 643
3 TraesCS1A01G177200 chr1A 257588933 257589563 630 True 972 972 94.281 1868 2511 1 chr1A.!!$R1 643
4 TraesCS1A01G177200 chr6D 451598341 451600157 1816 True 2905 2905 95.614 1 1810 1 chr6D.!!$R5 1809
5 TraesCS1A01G177200 chr6D 459129163 459130976 1813 False 2904 2904 95.609 1 1810 1 chr6D.!!$F2 1809
6 TraesCS1A01G177200 chr6D 397852660 397854480 1820 True 2881 2881 95.345 1 1810 1 chr6D.!!$R4 1809
7 TraesCS1A01G177200 chr6D 133727766 133729575 1809 True 2817 2817 94.797 1 1810 1 chr6D.!!$R2 1809
8 TraesCS1A01G177200 chr6D 386034638 386036450 1812 True 2813 2813 94.743 1 1810 1 chr6D.!!$R3 1809
9 TraesCS1A01G177200 chr6D 434399969 434400980 1011 False 1447 1447 92.822 1 992 1 chr6D.!!$F1 991
10 TraesCS1A01G177200 chr3D 337615067 337616880 1813 False 2887 2887 95.450 1 1810 1 chr3D.!!$F2 1809
11 TraesCS1A01G177200 chr3D 368498136 368499083 947 True 1447 1447 94.346 1 943 1 chr3D.!!$R2 942
12 TraesCS1A01G177200 chr3D 64047589 64048302 713 False 1096 1096 94.700 1 701 1 chr3D.!!$F1 700
13 TraesCS1A01G177200 chr3D 18705104 18705788 684 True 922 922 91.971 1868 2511 1 chr3D.!!$R1 643
14 TraesCS1A01G177200 chr7D 421675274 421677092 1818 False 2868 2868 95.235 1 1810 1 chr7D.!!$F1 1809
15 TraesCS1A01G177200 chr7D 216799411 216800350 939 True 1456 1456 94.809 1 930 1 chr7D.!!$R1 929
16 TraesCS1A01G177200 chr2D 54045746 54047566 1820 True 2865 2865 95.181 1 1810 1 chr2D.!!$R1 1809
17 TraesCS1A01G177200 chr1D 43033309 43035124 1815 False 2850 2850 95.071 1 1810 1 chr1D.!!$F1 1809
18 TraesCS1A01G177200 chr1D 361005962 361006645 683 False 922 922 91.971 1868 2511 1 chr1D.!!$F2 643
19 TraesCS1A01G177200 chr1D 466979490 466980046 556 True 697 697 90.485 1868 2382 1 chr1D.!!$R1 514
20 TraesCS1A01G177200 chr5D 426130335 426132154 1819 False 2837 2837 94.910 1 1810 1 chr5D.!!$F2 1809
21 TraesCS1A01G177200 chr5D 56214802 56215482 680 False 891 891 91.241 1868 2511 1 chr5D.!!$F1 643
22 TraesCS1A01G177200 chr5D 391881337 391882009 672 True 706 706 86.569 1868 2511 1 chr5D.!!$R3 643
23 TraesCS1A01G177200 chr5D 215552237 215552789 552 True 688 688 90.288 1868 2382 1 chr5D.!!$R1 514
24 TraesCS1A01G177200 chr4A 45631387 45633874 2487 False 1921 2822 94.842 1 2511 2 chr4A.!!$F1 2510
25 TraesCS1A01G177200 chr4A 246820672 246821249 577 True 963 963 96.724 1933 2511 1 chr4A.!!$R1 578
26 TraesCS1A01G177200 chr4D 329901323 329902262 939 False 1428 1428 94.286 1 930 1 chr4D.!!$F1 929
27 TraesCS1A01G177200 chr4D 67957927 67958611 684 True 928 928 92.117 1868 2511 1 chr4D.!!$R1 643
28 TraesCS1A01G177200 chr2A 677263838 677264501 663 False 981 981 93.844 1868 2511 1 chr2A.!!$F2 643
29 TraesCS1A01G177200 chr2A 87341524 87342103 579 False 970 970 96.897 1933 2511 1 chr2A.!!$F1 578
30 TraesCS1A01G177200 chr6A 484782175 484782762 587 True 972 972 96.599 1928 2511 1 chr6A.!!$R2 583
31 TraesCS1A01G177200 chr6A 468226164 468226741 577 False 963 963 96.724 1933 2511 1 chr6A.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 751 0.255033 GGGGTTTTACGATCTGCCCT 59.745 55.0 0.0 0.0 36.46 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 2663 0.039035 GTGGCACCATTAACCTGGGA 59.961 55.0 6.29 0.0 40.85 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 143 6.992063 TGAAGCTATGGAGATTTTTCTGAC 57.008 37.500 0.00 0.00 29.33 3.51
188 202 6.014012 CCTAAACCCTCTCTCCCTATTCTAG 58.986 48.000 0.00 0.00 0.00 2.43
470 497 7.598118 TCATAAACGGACGAACTATGTTTGTTA 59.402 33.333 0.00 0.00 34.80 2.41
534 562 8.893563 TTGAAATCTGGTCAAACCCTAATAAT 57.106 30.769 0.00 0.00 37.50 1.28
543 571 6.609616 GGTCAAACCCTAATAATCCCATTGAA 59.390 38.462 0.00 0.00 30.04 2.69
559 587 0.828022 TGAATCGCTCATAACCCCGT 59.172 50.000 0.00 0.00 0.00 5.28
685 735 2.266055 GCACTGTCCTTCTCGGGG 59.734 66.667 0.00 0.00 0.00 5.73
701 751 0.255033 GGGGTTTTACGATCTGCCCT 59.745 55.000 0.00 0.00 36.46 5.19
704 754 2.558378 GGTTTTACGATCTGCCCTACC 58.442 52.381 0.00 0.00 0.00 3.18
756 807 3.880490 GACCACCACATGTCAGTGTTAAA 59.120 43.478 19.28 0.00 37.82 1.52
815 866 7.864686 TGTGGAAAATCATCAATATAGCTTCG 58.135 34.615 0.00 0.00 0.00 3.79
882 935 4.452455 TCGAGCAATTCCTCTGTTTCTTTC 59.548 41.667 0.00 0.00 0.00 2.62
938 993 1.896465 CCTCTGTTTCTTCCTCTCGGT 59.104 52.381 0.00 0.00 0.00 4.69
997 1052 1.980052 CCGGTGTATGGTCCAGTGT 59.020 57.895 0.00 0.00 0.00 3.55
998 1053 0.323629 CCGGTGTATGGTCCAGTGTT 59.676 55.000 0.00 0.00 0.00 3.32
1331 1386 2.195727 TCAATCTGCCCCATGACAGTA 58.804 47.619 0.00 0.00 35.37 2.74
1332 1387 2.575735 TCAATCTGCCCCATGACAGTAA 59.424 45.455 0.00 0.00 35.37 2.24
1382 1437 1.317431 CCCGACGGTGGTAGATGTCA 61.317 60.000 13.94 0.00 0.00 3.58
1384 1439 1.136305 CCGACGGTGGTAGATGTCAAT 59.864 52.381 5.48 0.00 0.00 2.57
1385 1440 2.418197 CCGACGGTGGTAGATGTCAATT 60.418 50.000 5.48 0.00 0.00 2.32
1410 1465 5.871524 TGAAGACGGAATTGAAGAAGATGAG 59.128 40.000 0.00 0.00 0.00 2.90
1634 1689 9.724839 GTATGCAGTTTACTGTTAAGTTTTGAA 57.275 29.630 11.23 0.00 45.45 2.69
1810 1865 2.165437 TCTCGCACTTGCCAAACTTTTT 59.835 40.909 0.00 0.00 37.91 1.94
1831 1886 5.828299 TTTTGTTCCTTGACCAGTACTTG 57.172 39.130 0.00 0.00 0.00 3.16
1832 1887 4.764050 TTGTTCCTTGACCAGTACTTGA 57.236 40.909 0.08 0.00 0.00 3.02
1833 1888 4.336889 TGTTCCTTGACCAGTACTTGAG 57.663 45.455 0.08 0.00 0.00 3.02
1834 1889 3.067833 GTTCCTTGACCAGTACTTGAGC 58.932 50.000 0.08 0.00 0.00 4.26
1835 1890 2.325484 TCCTTGACCAGTACTTGAGCA 58.675 47.619 0.08 0.00 0.00 4.26
1836 1891 2.300152 TCCTTGACCAGTACTTGAGCAG 59.700 50.000 0.08 0.00 0.00 4.24
1837 1892 2.300152 CCTTGACCAGTACTTGAGCAGA 59.700 50.000 0.08 0.00 0.00 4.26
1838 1893 3.244215 CCTTGACCAGTACTTGAGCAGAA 60.244 47.826 0.08 0.00 0.00 3.02
1839 1894 3.386768 TGACCAGTACTTGAGCAGAAC 57.613 47.619 0.08 0.00 0.00 3.01
1840 1895 2.698274 TGACCAGTACTTGAGCAGAACA 59.302 45.455 0.08 0.00 0.00 3.18
1841 1896 3.133901 TGACCAGTACTTGAGCAGAACAA 59.866 43.478 0.08 0.00 0.00 2.83
1842 1897 3.733337 ACCAGTACTTGAGCAGAACAAG 58.267 45.455 0.08 0.00 46.69 3.16
1843 1898 3.070018 CCAGTACTTGAGCAGAACAAGG 58.930 50.000 0.00 0.00 45.92 3.61
1844 1899 3.070018 CAGTACTTGAGCAGAACAAGGG 58.930 50.000 0.00 0.00 45.92 3.95
1845 1900 2.972713 AGTACTTGAGCAGAACAAGGGA 59.027 45.455 0.00 0.00 45.92 4.20
1846 1901 3.584848 AGTACTTGAGCAGAACAAGGGAT 59.415 43.478 0.00 0.00 45.92 3.85
1847 1902 4.777896 AGTACTTGAGCAGAACAAGGGATA 59.222 41.667 0.00 0.00 45.92 2.59
1848 1903 4.851639 ACTTGAGCAGAACAAGGGATAT 57.148 40.909 0.00 0.00 45.92 1.63
1849 1904 5.957771 ACTTGAGCAGAACAAGGGATATA 57.042 39.130 0.00 0.00 45.92 0.86
1850 1905 5.675538 ACTTGAGCAGAACAAGGGATATAC 58.324 41.667 0.00 0.00 45.92 1.47
1851 1906 5.189736 ACTTGAGCAGAACAAGGGATATACA 59.810 40.000 0.00 0.00 45.92 2.29
1852 1907 5.894298 TGAGCAGAACAAGGGATATACAT 57.106 39.130 0.00 0.00 0.00 2.29
1853 1908 5.858381 TGAGCAGAACAAGGGATATACATC 58.142 41.667 0.00 0.00 0.00 3.06
1854 1909 5.366477 TGAGCAGAACAAGGGATATACATCA 59.634 40.000 0.00 0.00 32.32 3.07
1855 1910 6.126796 TGAGCAGAACAAGGGATATACATCAA 60.127 38.462 0.00 0.00 32.32 2.57
1856 1911 6.294473 AGCAGAACAAGGGATATACATCAAG 58.706 40.000 0.00 0.00 32.32 3.02
1857 1912 6.058183 GCAGAACAAGGGATATACATCAAGT 58.942 40.000 0.00 0.00 32.32 3.16
1858 1913 6.543831 GCAGAACAAGGGATATACATCAAGTT 59.456 38.462 0.00 0.00 32.32 2.66
1859 1914 7.254932 GCAGAACAAGGGATATACATCAAGTTC 60.255 40.741 0.00 0.00 33.67 3.01
1860 1915 7.227512 CAGAACAAGGGATATACATCAAGTTCC 59.772 40.741 8.18 0.00 33.81 3.62
1861 1916 6.831664 ACAAGGGATATACATCAAGTTCCT 57.168 37.500 0.00 0.00 32.32 3.36
1862 1917 7.213178 ACAAGGGATATACATCAAGTTCCTT 57.787 36.000 0.00 0.00 31.63 3.36
1863 1918 7.056635 ACAAGGGATATACATCAAGTTCCTTG 58.943 38.462 12.01 12.01 43.80 3.61
2369 2491 8.627403 AGAAGGCATCTATAAACACATCATTTG 58.373 33.333 0.00 0.00 36.32 2.32
2383 2505 7.871853 ACACATCATTTGTAGTTAGTTTGGTC 58.128 34.615 0.00 0.00 36.57 4.02
2393 2515 8.294954 TGTAGTTAGTTTGGTCAATTTTTCCA 57.705 30.769 0.00 0.00 0.00 3.53
2511 2633 6.318900 GCTAGGGCAACATAAGTTCTTACATT 59.681 38.462 0.00 0.00 35.28 2.71
2512 2634 6.515272 AGGGCAACATAAGTTCTTACATTG 57.485 37.500 10.65 10.65 35.28 2.82
2513 2635 6.010219 AGGGCAACATAAGTTCTTACATTGT 58.990 36.000 13.93 0.00 35.28 2.71
2514 2636 6.071952 AGGGCAACATAAGTTCTTACATTGTG 60.072 38.462 0.00 4.93 35.28 3.33
2515 2637 6.072175 GGGCAACATAAGTTCTTACATTGTGA 60.072 38.462 0.00 0.00 35.28 3.58
2516 2638 7.362920 GGGCAACATAAGTTCTTACATTGTGAT 60.363 37.037 0.00 0.00 35.28 3.06
2517 2639 7.485913 GGCAACATAAGTTCTTACATTGTGATG 59.514 37.037 0.00 7.31 35.28 3.07
2518 2640 8.023128 GCAACATAAGTTCTTACATTGTGATGT 58.977 33.333 0.00 0.00 41.80 3.06
2519 2641 9.546909 CAACATAAGTTCTTACATTGTGATGTC 57.453 33.333 0.00 0.00 39.79 3.06
2520 2642 8.268850 ACATAAGTTCTTACATTGTGATGTCC 57.731 34.615 0.00 0.00 42.83 4.02
2521 2643 5.862924 AAGTTCTTACATTGTGATGTCCG 57.137 39.130 0.00 0.00 42.83 4.79
2522 2644 4.253685 AGTTCTTACATTGTGATGTCCGG 58.746 43.478 0.00 0.00 42.83 5.14
2523 2645 4.020573 AGTTCTTACATTGTGATGTCCGGA 60.021 41.667 0.00 0.00 42.83 5.14
2524 2646 4.753516 TCTTACATTGTGATGTCCGGAT 57.246 40.909 7.81 0.00 42.83 4.18
2525 2647 5.862678 TCTTACATTGTGATGTCCGGATA 57.137 39.130 7.81 4.93 42.83 2.59
2526 2648 6.228616 TCTTACATTGTGATGTCCGGATAA 57.771 37.500 7.81 0.00 42.83 1.75
2527 2649 6.826668 TCTTACATTGTGATGTCCGGATAAT 58.173 36.000 7.81 4.57 42.83 1.28
2528 2650 7.279615 TCTTACATTGTGATGTCCGGATAATT 58.720 34.615 7.81 0.00 42.83 1.40
2529 2651 8.425703 TCTTACATTGTGATGTCCGGATAATTA 58.574 33.333 7.81 0.00 42.83 1.40
2530 2652 8.966069 TTACATTGTGATGTCCGGATAATTAA 57.034 30.769 7.81 0.00 42.83 1.40
2531 2653 7.496529 ACATTGTGATGTCCGGATAATTAAG 57.503 36.000 7.81 0.00 42.83 1.85
2532 2654 7.054124 ACATTGTGATGTCCGGATAATTAAGT 58.946 34.615 7.81 0.00 42.83 2.24
2533 2655 7.556275 ACATTGTGATGTCCGGATAATTAAGTT 59.444 33.333 7.81 0.00 42.83 2.66
2534 2656 9.051679 CATTGTGATGTCCGGATAATTAAGTTA 57.948 33.333 7.81 0.00 0.00 2.24
2535 2657 8.428186 TTGTGATGTCCGGATAATTAAGTTAC 57.572 34.615 7.81 0.00 0.00 2.50
2536 2658 7.557724 TGTGATGTCCGGATAATTAAGTTACA 58.442 34.615 7.81 0.00 0.00 2.41
2537 2659 7.709182 TGTGATGTCCGGATAATTAAGTTACAG 59.291 37.037 7.81 0.00 0.00 2.74
2538 2660 7.709613 GTGATGTCCGGATAATTAAGTTACAGT 59.290 37.037 7.81 0.00 0.00 3.55
2539 2661 8.916062 TGATGTCCGGATAATTAAGTTACAGTA 58.084 33.333 7.81 0.00 0.00 2.74
2540 2662 9.754382 GATGTCCGGATAATTAAGTTACAGTAA 57.246 33.333 7.81 0.00 0.00 2.24
2542 2664 9.754382 TGTCCGGATAATTAAGTTACAGTAATC 57.246 33.333 7.81 0.00 0.00 1.75
2543 2665 9.201127 GTCCGGATAATTAAGTTACAGTAATCC 57.799 37.037 7.81 0.00 0.00 3.01
2544 2666 8.370182 TCCGGATAATTAAGTTACAGTAATCCC 58.630 37.037 0.00 0.00 0.00 3.85
2545 2667 8.152246 CCGGATAATTAAGTTACAGTAATCCCA 58.848 37.037 0.00 0.00 0.00 4.37
2546 2668 9.204570 CGGATAATTAAGTTACAGTAATCCCAG 57.795 37.037 0.00 0.00 0.00 4.45
2547 2669 9.503399 GGATAATTAAGTTACAGTAATCCCAGG 57.497 37.037 0.00 0.00 0.00 4.45
2553 2675 9.675464 TTAAGTTACAGTAATCCCAGGTTAATG 57.325 33.333 0.00 0.00 34.37 1.90
2554 2676 6.659824 AGTTACAGTAATCCCAGGTTAATGG 58.340 40.000 0.00 0.00 40.29 3.16
2555 2677 6.216868 AGTTACAGTAATCCCAGGTTAATGGT 59.783 38.462 0.00 0.00 38.81 3.55
2556 2678 4.855340 ACAGTAATCCCAGGTTAATGGTG 58.145 43.478 0.83 0.00 38.81 4.17
2557 2679 3.632145 CAGTAATCCCAGGTTAATGGTGC 59.368 47.826 0.00 0.00 38.81 5.01
2558 2680 2.159179 AATCCCAGGTTAATGGTGCC 57.841 50.000 0.00 0.00 38.81 5.01
2559 2681 1.006813 ATCCCAGGTTAATGGTGCCA 58.993 50.000 0.00 0.00 38.81 4.92
2560 2682 0.039035 TCCCAGGTTAATGGTGCCAC 59.961 55.000 0.00 0.00 38.81 5.01
2561 2683 0.251564 CCCAGGTTAATGGTGCCACA 60.252 55.000 0.00 0.00 38.81 4.17
2562 2684 1.619432 CCCAGGTTAATGGTGCCACAT 60.619 52.381 0.00 0.00 38.81 3.21
2563 2685 1.750778 CCAGGTTAATGGTGCCACATC 59.249 52.381 0.00 0.00 35.47 3.06
2564 2686 2.445427 CAGGTTAATGGTGCCACATCA 58.555 47.619 0.00 0.00 0.00 3.07
2565 2687 3.025978 CAGGTTAATGGTGCCACATCAT 58.974 45.455 0.00 0.00 36.69 2.45
2566 2688 3.067180 CAGGTTAATGGTGCCACATCATC 59.933 47.826 0.00 0.00 33.68 2.92
2567 2689 3.023119 GGTTAATGGTGCCACATCATCA 58.977 45.455 0.00 0.00 33.68 3.07
2568 2690 3.181487 GGTTAATGGTGCCACATCATCAC 60.181 47.826 0.00 0.00 33.68 3.06
2569 2691 2.519771 AATGGTGCCACATCATCACT 57.480 45.000 0.00 0.00 33.68 3.41
2570 2692 2.048444 ATGGTGCCACATCATCACTC 57.952 50.000 0.00 0.00 27.70 3.51
2571 2693 0.986527 TGGTGCCACATCATCACTCT 59.013 50.000 0.00 0.00 0.00 3.24
2572 2694 1.352017 TGGTGCCACATCATCACTCTT 59.648 47.619 0.00 0.00 0.00 2.85
2573 2695 2.571202 TGGTGCCACATCATCACTCTTA 59.429 45.455 0.00 0.00 0.00 2.10
2574 2696 2.939103 GGTGCCACATCATCACTCTTAC 59.061 50.000 0.00 0.00 0.00 2.34
2575 2697 3.369892 GGTGCCACATCATCACTCTTACT 60.370 47.826 0.00 0.00 0.00 2.24
2576 2698 3.620374 GTGCCACATCATCACTCTTACTG 59.380 47.826 0.00 0.00 0.00 2.74
2577 2699 3.261643 TGCCACATCATCACTCTTACTGT 59.738 43.478 0.00 0.00 0.00 3.55
2578 2700 4.256920 GCCACATCATCACTCTTACTGTT 58.743 43.478 0.00 0.00 0.00 3.16
2579 2701 4.093998 GCCACATCATCACTCTTACTGTTG 59.906 45.833 0.00 0.00 0.00 3.33
2580 2702 5.240891 CCACATCATCACTCTTACTGTTGT 58.759 41.667 0.00 0.00 0.00 3.32
2581 2703 5.702670 CCACATCATCACTCTTACTGTTGTT 59.297 40.000 0.00 0.00 0.00 2.83
2582 2704 6.873605 CCACATCATCACTCTTACTGTTGTTA 59.126 38.462 0.00 0.00 0.00 2.41
2583 2705 7.387673 CCACATCATCACTCTTACTGTTGTTAA 59.612 37.037 0.00 0.00 0.00 2.01
2584 2706 8.939929 CACATCATCACTCTTACTGTTGTTAAT 58.060 33.333 0.00 0.00 0.00 1.40
2585 2707 9.155975 ACATCATCACTCTTACTGTTGTTAATC 57.844 33.333 0.00 0.00 0.00 1.75
2586 2708 8.607459 CATCATCACTCTTACTGTTGTTAATCC 58.393 37.037 0.00 0.00 0.00 3.01
2587 2709 7.907389 TCATCACTCTTACTGTTGTTAATCCT 58.093 34.615 0.00 0.00 0.00 3.24
2588 2710 8.375506 TCATCACTCTTACTGTTGTTAATCCTT 58.624 33.333 0.00 0.00 0.00 3.36
2589 2711 7.962964 TCACTCTTACTGTTGTTAATCCTTG 57.037 36.000 0.00 0.00 0.00 3.61
2590 2712 6.934645 TCACTCTTACTGTTGTTAATCCTTGG 59.065 38.462 0.00 0.00 0.00 3.61
2591 2713 6.710744 CACTCTTACTGTTGTTAATCCTTGGT 59.289 38.462 0.00 0.00 0.00 3.67
2592 2714 7.228706 CACTCTTACTGTTGTTAATCCTTGGTT 59.771 37.037 0.00 0.00 0.00 3.67
2593 2715 7.228706 ACTCTTACTGTTGTTAATCCTTGGTTG 59.771 37.037 0.00 0.00 0.00 3.77
2594 2716 7.284074 TCTTACTGTTGTTAATCCTTGGTTGA 58.716 34.615 0.00 0.00 0.00 3.18
2595 2717 7.942341 TCTTACTGTTGTTAATCCTTGGTTGAT 59.058 33.333 0.00 0.00 0.00 2.57
2596 2718 6.575162 ACTGTTGTTAATCCTTGGTTGATC 57.425 37.500 0.00 0.00 0.00 2.92
2597 2719 5.476945 ACTGTTGTTAATCCTTGGTTGATCC 59.523 40.000 0.00 0.00 0.00 3.36
2598 2720 5.389520 TGTTGTTAATCCTTGGTTGATCCA 58.610 37.500 0.00 0.00 45.60 3.41
2606 2728 3.542046 TGGTTGATCCAAATCGCGA 57.458 47.368 13.09 13.09 44.12 5.87
2607 2729 2.036958 TGGTTGATCCAAATCGCGAT 57.963 45.000 17.62 17.62 44.12 4.58
2608 2730 1.939934 TGGTTGATCCAAATCGCGATC 59.060 47.619 23.92 10.31 44.12 3.69
2609 2731 1.264288 GGTTGATCCAAATCGCGATCC 59.736 52.381 23.92 11.95 35.09 3.36
2610 2732 1.939934 GTTGATCCAAATCGCGATCCA 59.060 47.619 23.92 10.57 35.09 3.41
2611 2733 2.323968 TGATCCAAATCGCGATCCAA 57.676 45.000 23.92 8.92 35.09 3.53
2612 2734 2.637947 TGATCCAAATCGCGATCCAAA 58.362 42.857 23.92 9.30 35.09 3.28
2613 2735 3.213506 TGATCCAAATCGCGATCCAAAT 58.786 40.909 23.92 13.76 35.09 2.32
2614 2736 3.631686 TGATCCAAATCGCGATCCAAATT 59.368 39.130 23.92 9.77 35.09 1.82
2615 2737 3.691049 TCCAAATCGCGATCCAAATTC 57.309 42.857 23.92 0.00 0.00 2.17
2616 2738 3.013219 TCCAAATCGCGATCCAAATTCA 58.987 40.909 23.92 0.00 0.00 2.57
2617 2739 3.441922 TCCAAATCGCGATCCAAATTCAA 59.558 39.130 23.92 0.00 0.00 2.69
2618 2740 4.082517 TCCAAATCGCGATCCAAATTCAAA 60.083 37.500 23.92 0.00 0.00 2.69
2619 2741 4.805192 CCAAATCGCGATCCAAATTCAAAT 59.195 37.500 23.92 0.00 0.00 2.32
2620 2742 5.291614 CCAAATCGCGATCCAAATTCAAATT 59.708 36.000 23.92 5.20 0.00 1.82
2621 2743 6.405216 CAAATCGCGATCCAAATTCAAATTC 58.595 36.000 23.92 0.00 0.00 2.17
2622 2744 4.693538 TCGCGATCCAAATTCAAATTCA 57.306 36.364 3.71 0.00 0.00 2.57
2623 2745 4.661125 TCGCGATCCAAATTCAAATTCAG 58.339 39.130 3.71 0.00 0.00 3.02
2624 2746 4.394610 TCGCGATCCAAATTCAAATTCAGA 59.605 37.500 3.71 0.00 0.00 3.27
2625 2747 5.094812 CGCGATCCAAATTCAAATTCAGAA 58.905 37.500 0.00 0.00 0.00 3.02
2626 2748 5.745294 CGCGATCCAAATTCAAATTCAGAAT 59.255 36.000 0.00 0.00 37.30 2.40
2627 2749 6.254157 CGCGATCCAAATTCAAATTCAGAATT 59.746 34.615 0.00 2.20 45.01 2.17
2628 2750 7.514125 CGCGATCCAAATTCAAATTCAGAATTC 60.514 37.037 8.90 0.00 42.98 2.17
2629 2751 7.490402 GCGATCCAAATTCAAATTCAGAATTCT 59.510 33.333 8.90 0.88 42.98 2.40
2630 2752 9.017669 CGATCCAAATTCAAATTCAGAATTCTC 57.982 33.333 4.57 10.66 42.98 2.87
2631 2753 9.865321 GATCCAAATTCAAATTCAGAATTCTCA 57.135 29.630 4.57 0.00 42.98 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 202 2.403252 ATGAACATGTTCGGAGTCCC 57.597 50.000 28.55 8.18 42.28 4.46
190 204 3.865745 CACCTATGAACATGTTCGGAGTC 59.134 47.826 27.68 11.03 42.28 3.36
534 562 3.476552 GGTTATGAGCGATTCAATGGGA 58.523 45.455 0.00 0.00 39.77 4.37
543 571 1.991121 TCTACGGGGTTATGAGCGAT 58.009 50.000 0.00 0.00 0.00 4.58
559 587 3.681594 CGCTAGGGTTTGGAGCATTTCTA 60.682 47.826 0.00 0.00 35.91 2.10
637 678 1.595109 GGATGCATCACGCGGATCA 60.595 57.895 27.25 10.71 46.97 2.92
685 735 3.538634 AGGTAGGGCAGATCGTAAAAC 57.461 47.619 0.00 0.00 0.00 2.43
756 807 7.271511 TGCAGTTTGAATATTTGAACCAACTT 58.728 30.769 9.82 0.00 0.00 2.66
815 866 3.900601 TCAGATGGATAAGAGGAGAAGGC 59.099 47.826 0.00 0.00 0.00 4.35
882 935 1.834263 AGAAGAACGAGAAGATGGGGG 59.166 52.381 0.00 0.00 0.00 5.40
997 1052 2.232208 AGTCAGTGCATCGAGTCATCAA 59.768 45.455 0.00 0.00 0.00 2.57
998 1053 1.821136 AGTCAGTGCATCGAGTCATCA 59.179 47.619 0.00 0.00 0.00 3.07
1382 1437 7.510549 TCTTCTTCAATTCCGTCTTCAAATT 57.489 32.000 0.00 0.00 0.00 1.82
1384 1439 6.710295 TCATCTTCTTCAATTCCGTCTTCAAA 59.290 34.615 0.00 0.00 0.00 2.69
1385 1440 6.230472 TCATCTTCTTCAATTCCGTCTTCAA 58.770 36.000 0.00 0.00 0.00 2.69
1410 1465 1.605710 TCAGCTGCTTGAAGTTCTTGC 59.394 47.619 9.47 8.79 0.00 4.01
1491 1546 2.388735 ACGAGAGATGGCCATCAAGTA 58.611 47.619 40.05 3.45 40.22 2.24
1810 1865 5.105567 TCAAGTACTGGTCAAGGAACAAA 57.894 39.130 0.00 0.00 0.00 2.83
1812 1867 3.494398 GCTCAAGTACTGGTCAAGGAACA 60.494 47.826 0.00 0.00 0.00 3.18
1813 1868 3.067833 GCTCAAGTACTGGTCAAGGAAC 58.932 50.000 0.00 0.00 0.00 3.62
1815 1870 2.300152 CTGCTCAAGTACTGGTCAAGGA 59.700 50.000 0.00 0.00 0.00 3.36
1816 1871 2.300152 TCTGCTCAAGTACTGGTCAAGG 59.700 50.000 0.00 0.00 0.00 3.61
1817 1872 3.667497 TCTGCTCAAGTACTGGTCAAG 57.333 47.619 0.00 0.00 0.00 3.02
1818 1873 3.133901 TGTTCTGCTCAAGTACTGGTCAA 59.866 43.478 0.00 0.00 0.00 3.18
1819 1874 2.698274 TGTTCTGCTCAAGTACTGGTCA 59.302 45.455 0.00 0.00 0.00 4.02
1820 1875 3.386768 TGTTCTGCTCAAGTACTGGTC 57.613 47.619 0.00 0.00 0.00 4.02
1821 1876 3.495100 CCTTGTTCTGCTCAAGTACTGGT 60.495 47.826 0.00 0.00 40.15 4.00
1822 1877 3.070018 CCTTGTTCTGCTCAAGTACTGG 58.930 50.000 0.00 0.00 40.15 4.00
1823 1878 3.070018 CCCTTGTTCTGCTCAAGTACTG 58.930 50.000 0.00 0.00 40.15 2.74
1824 1879 2.972713 TCCCTTGTTCTGCTCAAGTACT 59.027 45.455 0.00 0.00 40.15 2.73
1825 1880 3.402628 TCCCTTGTTCTGCTCAAGTAC 57.597 47.619 0.00 0.00 40.15 2.73
1826 1881 5.957771 ATATCCCTTGTTCTGCTCAAGTA 57.042 39.130 0.00 0.00 40.15 2.24
1827 1882 4.851639 ATATCCCTTGTTCTGCTCAAGT 57.148 40.909 0.00 0.00 40.15 3.16
1828 1883 5.674525 TGTATATCCCTTGTTCTGCTCAAG 58.325 41.667 0.00 0.00 41.06 3.02
1829 1884 5.692115 TGTATATCCCTTGTTCTGCTCAA 57.308 39.130 0.00 0.00 0.00 3.02
1830 1885 5.366477 TGATGTATATCCCTTGTTCTGCTCA 59.634 40.000 0.00 0.00 32.09 4.26
1831 1886 5.858381 TGATGTATATCCCTTGTTCTGCTC 58.142 41.667 0.00 0.00 32.09 4.26
1832 1887 5.894298 TGATGTATATCCCTTGTTCTGCT 57.106 39.130 0.00 0.00 32.09 4.24
1833 1888 6.058183 ACTTGATGTATATCCCTTGTTCTGC 58.942 40.000 0.00 0.00 32.09 4.26
1834 1889 7.227512 GGAACTTGATGTATATCCCTTGTTCTG 59.772 40.741 15.78 0.00 33.18 3.02
1835 1890 7.127955 AGGAACTTGATGTATATCCCTTGTTCT 59.872 37.037 15.78 6.83 27.25 3.01
1836 1891 7.283329 AGGAACTTGATGTATATCCCTTGTTC 58.717 38.462 0.00 6.32 27.25 3.18
1837 1892 7.213178 AGGAACTTGATGTATATCCCTTGTT 57.787 36.000 0.00 0.00 27.25 2.83
1838 1893 6.831664 AGGAACTTGATGTATATCCCTTGT 57.168 37.500 0.00 0.00 27.25 3.16
1856 1911 1.795286 CTGACGAACTGCTCAAGGAAC 59.205 52.381 0.00 0.00 0.00 3.62
1857 1912 1.412710 ACTGACGAACTGCTCAAGGAA 59.587 47.619 0.00 0.00 0.00 3.36
1858 1913 1.040646 ACTGACGAACTGCTCAAGGA 58.959 50.000 0.00 0.00 0.00 3.36
1859 1914 1.795286 GAACTGACGAACTGCTCAAGG 59.205 52.381 0.00 0.00 0.00 3.61
1860 1915 2.474359 CAGAACTGACGAACTGCTCAAG 59.526 50.000 0.00 0.00 0.00 3.02
1861 1916 2.473816 CAGAACTGACGAACTGCTCAA 58.526 47.619 0.00 0.00 0.00 3.02
1862 1917 2.140065 CAGAACTGACGAACTGCTCA 57.860 50.000 0.00 0.00 0.00 4.26
1866 1921 3.560902 TCTAGCAGAACTGACGAACTG 57.439 47.619 5.97 0.00 0.00 3.16
2369 2491 9.027129 GTTGGAAAAATTGACCAAACTAACTAC 57.973 33.333 11.15 0.00 43.74 2.73
2383 2505 4.142924 GGCTAATTGGCGTTGGAAAAATTG 60.143 41.667 7.78 0.00 0.00 2.32
2511 2633 7.557724 TGTAACTTAATTATCCGGACATCACA 58.442 34.615 6.12 0.00 0.00 3.58
2512 2634 7.709613 ACTGTAACTTAATTATCCGGACATCAC 59.290 37.037 6.12 0.00 0.00 3.06
2513 2635 7.788026 ACTGTAACTTAATTATCCGGACATCA 58.212 34.615 6.12 0.00 0.00 3.07
2514 2636 9.754382 TTACTGTAACTTAATTATCCGGACATC 57.246 33.333 6.12 0.00 0.00 3.06
2516 2638 9.754382 GATTACTGTAACTTAATTATCCGGACA 57.246 33.333 6.12 0.00 0.00 4.02
2517 2639 9.201127 GGATTACTGTAACTTAATTATCCGGAC 57.799 37.037 6.12 0.00 0.00 4.79
2518 2640 8.370182 GGGATTACTGTAACTTAATTATCCGGA 58.630 37.037 6.61 6.61 31.87 5.14
2519 2641 8.152246 TGGGATTACTGTAACTTAATTATCCGG 58.848 37.037 1.73 0.00 31.87 5.14
2520 2642 9.204570 CTGGGATTACTGTAACTTAATTATCCG 57.795 37.037 1.73 0.00 31.87 4.18
2521 2643 9.503399 CCTGGGATTACTGTAACTTAATTATCC 57.497 37.037 1.73 3.53 0.00 2.59
2527 2649 9.675464 CATTAACCTGGGATTACTGTAACTTAA 57.325 33.333 1.73 0.31 0.00 1.85
2528 2650 8.269317 CCATTAACCTGGGATTACTGTAACTTA 58.731 37.037 1.73 0.00 32.28 2.24
2529 2651 7.116736 CCATTAACCTGGGATTACTGTAACTT 58.883 38.462 1.73 0.00 32.28 2.66
2530 2652 6.216868 ACCATTAACCTGGGATTACTGTAACT 59.783 38.462 1.73 0.00 40.85 2.24
2531 2653 6.317893 CACCATTAACCTGGGATTACTGTAAC 59.682 42.308 1.73 0.00 40.85 2.50
2532 2654 6.419791 CACCATTAACCTGGGATTACTGTAA 58.580 40.000 2.26 2.26 40.85 2.41
2533 2655 5.630539 GCACCATTAACCTGGGATTACTGTA 60.631 44.000 0.00 0.00 40.85 2.74
2534 2656 4.855340 CACCATTAACCTGGGATTACTGT 58.145 43.478 0.00 0.00 40.85 3.55
2535 2657 3.632145 GCACCATTAACCTGGGATTACTG 59.368 47.826 0.00 0.00 40.85 2.74
2536 2658 3.372675 GGCACCATTAACCTGGGATTACT 60.373 47.826 0.00 0.00 40.85 2.24
2537 2659 2.956333 GGCACCATTAACCTGGGATTAC 59.044 50.000 0.00 0.00 40.85 1.89
2538 2660 2.583101 TGGCACCATTAACCTGGGATTA 59.417 45.455 0.00 0.00 40.85 1.75
2539 2661 1.360852 TGGCACCATTAACCTGGGATT 59.639 47.619 0.00 0.00 40.85 3.01
2540 2662 1.006813 TGGCACCATTAACCTGGGAT 58.993 50.000 0.00 0.00 40.85 3.85
2541 2663 0.039035 GTGGCACCATTAACCTGGGA 59.961 55.000 6.29 0.00 40.85 4.37
2542 2664 0.251564 TGTGGCACCATTAACCTGGG 60.252 55.000 16.26 0.00 40.85 4.45
2543 2665 1.750778 GATGTGGCACCATTAACCTGG 59.249 52.381 16.26 0.00 42.35 4.45
2544 2666 2.445427 TGATGTGGCACCATTAACCTG 58.555 47.619 16.26 0.00 0.00 4.00
2545 2667 2.897271 TGATGTGGCACCATTAACCT 57.103 45.000 16.26 0.00 0.00 3.50
2546 2668 3.023119 TGATGATGTGGCACCATTAACC 58.977 45.455 16.26 1.31 0.00 2.85
2547 2669 3.696051 AGTGATGATGTGGCACCATTAAC 59.304 43.478 16.26 13.42 33.14 2.01
2548 2670 3.947196 GAGTGATGATGTGGCACCATTAA 59.053 43.478 16.26 0.00 33.14 1.40
2549 2671 3.200605 AGAGTGATGATGTGGCACCATTA 59.799 43.478 16.26 6.22 33.14 1.90
2550 2672 2.025605 AGAGTGATGATGTGGCACCATT 60.026 45.455 16.26 1.64 33.14 3.16
2551 2673 1.562942 AGAGTGATGATGTGGCACCAT 59.437 47.619 16.26 12.10 33.14 3.55
2552 2674 0.986527 AGAGTGATGATGTGGCACCA 59.013 50.000 16.26 7.14 33.14 4.17
2553 2675 2.119801 AAGAGTGATGATGTGGCACC 57.880 50.000 16.26 0.43 33.14 5.01
2554 2676 3.620374 CAGTAAGAGTGATGATGTGGCAC 59.380 47.826 11.55 11.55 0.00 5.01
2555 2677 3.261643 ACAGTAAGAGTGATGATGTGGCA 59.738 43.478 0.00 0.00 0.00 4.92
2556 2678 3.866651 ACAGTAAGAGTGATGATGTGGC 58.133 45.455 0.00 0.00 0.00 5.01
2557 2679 5.240891 ACAACAGTAAGAGTGATGATGTGG 58.759 41.667 0.00 0.00 0.00 4.17
2558 2680 6.791887 AACAACAGTAAGAGTGATGATGTG 57.208 37.500 0.00 0.00 0.00 3.21
2559 2681 9.155975 GATTAACAACAGTAAGAGTGATGATGT 57.844 33.333 0.00 0.00 0.00 3.06
2560 2682 8.607459 GGATTAACAACAGTAAGAGTGATGATG 58.393 37.037 0.00 0.00 0.00 3.07
2561 2683 8.543774 AGGATTAACAACAGTAAGAGTGATGAT 58.456 33.333 0.00 0.00 0.00 2.45
2562 2684 7.907389 AGGATTAACAACAGTAAGAGTGATGA 58.093 34.615 0.00 0.00 0.00 2.92
2563 2685 8.446273 CAAGGATTAACAACAGTAAGAGTGATG 58.554 37.037 0.00 0.00 0.00 3.07
2564 2686 7.607991 CCAAGGATTAACAACAGTAAGAGTGAT 59.392 37.037 0.00 0.00 0.00 3.06
2565 2687 6.934645 CCAAGGATTAACAACAGTAAGAGTGA 59.065 38.462 0.00 0.00 0.00 3.41
2566 2688 6.710744 ACCAAGGATTAACAACAGTAAGAGTG 59.289 38.462 0.00 0.00 0.00 3.51
2567 2689 6.838382 ACCAAGGATTAACAACAGTAAGAGT 58.162 36.000 0.00 0.00 0.00 3.24
2568 2690 7.444183 TCAACCAAGGATTAACAACAGTAAGAG 59.556 37.037 0.00 0.00 0.00 2.85
2569 2691 7.284074 TCAACCAAGGATTAACAACAGTAAGA 58.716 34.615 0.00 0.00 0.00 2.10
2570 2692 7.504924 TCAACCAAGGATTAACAACAGTAAG 57.495 36.000 0.00 0.00 0.00 2.34
2571 2693 7.175990 GGATCAACCAAGGATTAACAACAGTAA 59.824 37.037 0.00 0.00 38.79 2.24
2572 2694 6.657541 GGATCAACCAAGGATTAACAACAGTA 59.342 38.462 0.00 0.00 38.79 2.74
2573 2695 5.476945 GGATCAACCAAGGATTAACAACAGT 59.523 40.000 0.00 0.00 38.79 3.55
2574 2696 5.476599 TGGATCAACCAAGGATTAACAACAG 59.523 40.000 0.00 0.00 46.75 3.16
2575 2697 5.389520 TGGATCAACCAAGGATTAACAACA 58.610 37.500 0.00 0.00 46.75 3.33
2576 2698 5.975693 TGGATCAACCAAGGATTAACAAC 57.024 39.130 0.00 0.00 46.75 3.32
2589 2711 1.264288 GGATCGCGATTTGGATCAACC 59.736 52.381 24.55 12.37 40.61 3.77
2590 2712 1.939934 TGGATCGCGATTTGGATCAAC 59.060 47.619 24.55 6.58 40.61 3.18
2591 2713 2.323968 TGGATCGCGATTTGGATCAA 57.676 45.000 24.55 0.00 40.61 2.57
2592 2714 2.323968 TTGGATCGCGATTTGGATCA 57.676 45.000 24.55 11.72 40.61 2.92
2593 2715 3.904136 ATTTGGATCGCGATTTGGATC 57.096 42.857 24.55 9.99 38.63 3.36
2594 2716 3.631686 TGAATTTGGATCGCGATTTGGAT 59.368 39.130 24.55 12.43 0.00 3.41
2595 2717 3.013219 TGAATTTGGATCGCGATTTGGA 58.987 40.909 24.55 10.61 0.00 3.53
2596 2718 3.419264 TGAATTTGGATCGCGATTTGG 57.581 42.857 24.55 0.00 0.00 3.28
2597 2719 5.954434 ATTTGAATTTGGATCGCGATTTG 57.046 34.783 24.55 0.00 0.00 2.32
2598 2720 6.098679 TGAATTTGAATTTGGATCGCGATTT 58.901 32.000 24.55 13.07 0.00 2.17
2599 2721 5.649557 TGAATTTGAATTTGGATCGCGATT 58.350 33.333 24.55 6.57 0.00 3.34
2600 2722 5.066375 TCTGAATTTGAATTTGGATCGCGAT 59.934 36.000 23.97 23.97 0.00 4.58
2601 2723 4.394610 TCTGAATTTGAATTTGGATCGCGA 59.605 37.500 13.09 13.09 0.00 5.87
2602 2724 4.661125 TCTGAATTTGAATTTGGATCGCG 58.339 39.130 0.00 0.00 0.00 5.87
2603 2725 7.490402 AGAATTCTGAATTTGAATTTGGATCGC 59.510 33.333 16.14 0.00 42.17 4.58
2604 2726 8.922058 AGAATTCTGAATTTGAATTTGGATCG 57.078 30.769 16.14 0.00 42.17 3.69
2605 2727 9.865321 TGAGAATTCTGAATTTGAATTTGGATC 57.135 29.630 14.00 13.35 42.17 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.