Multiple sequence alignment - TraesCS1A01G176600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G176600 chr1A 100.000 3365 0 0 1 3365 316892342 316895706 0.000000e+00 6215.0
1 TraesCS1A01G176600 chr1A 93.816 857 48 3 2294 3149 392523182 392522330 0.000000e+00 1284.0
2 TraesCS1A01G176600 chr1A 87.697 317 21 7 124 439 316861789 316862088 1.490000e-93 353.0
3 TraesCS1A01G176600 chr1A 94.355 124 7 0 1 124 143497229 143497352 1.230000e-44 191.0
4 TraesCS1A01G176600 chr1A 94.355 124 7 0 1 124 541980879 541981002 1.230000e-44 191.0
5 TraesCS1A01G176600 chr6A 96.429 2044 43 3 1125 3149 129345487 129347519 0.000000e+00 3343.0
6 TraesCS1A01G176600 chr6A 95.122 123 6 0 1 123 415573073 415573195 9.530000e-46 195.0
7 TraesCS1A01G176600 chr6A 93.651 126 8 0 1 126 166932803 166932678 4.430000e-44 189.0
8 TraesCS1A01G176600 chr1B 93.879 2042 100 5 1127 3149 269305857 269303822 0.000000e+00 3055.0
9 TraesCS1A01G176600 chr1B 93.246 533 24 5 532 1052 367426052 367425520 0.000000e+00 774.0
10 TraesCS1A01G176600 chr1B 98.235 170 3 0 3196 3365 5897436 5897605 7.060000e-77 298.0
11 TraesCS1A01G176600 chr1B 97.647 170 4 0 3196 3365 38210002 38210171 3.280000e-75 292.0
12 TraesCS1A01G176600 chr1B 90.196 204 17 2 292 495 367428427 367428227 2.570000e-66 263.0
13 TraesCS1A01G176600 chr1B 92.188 128 10 0 124 251 367428713 367428586 7.420000e-42 182.0
14 TraesCS1A01G176600 chr1B 92.157 51 2 2 1072 1122 367425519 367425471 1.680000e-08 71.3
15 TraesCS1A01G176600 chr5D 88.287 2049 200 10 1126 3149 555478538 555480571 0.000000e+00 2418.0
16 TraesCS1A01G176600 chr7A 94.928 1380 49 4 1791 3149 30219625 30218246 0.000000e+00 2141.0
17 TraesCS1A01G176600 chr7A 96.944 589 18 0 2561 3149 482197540 482198128 0.000000e+00 989.0
18 TraesCS1A01G176600 chr7A 96.604 589 20 0 1127 1715 30220214 30219626 0.000000e+00 977.0
19 TraesCS1A01G176600 chr7A 98.235 170 3 0 3196 3365 725608806 725608637 7.060000e-77 298.0
20 TraesCS1A01G176600 chr7A 95.200 125 6 0 1 125 688454688 688454812 7.360000e-47 198.0
21 TraesCS1A01G176600 chr7A 95.161 124 6 0 1 124 732867727 732867850 2.650000e-46 196.0
22 TraesCS1A01G176600 chr3B 95.238 630 28 2 2521 3149 772140624 772139996 0.000000e+00 996.0
23 TraesCS1A01G176600 chr1D 91.919 396 26 2 541 930 232158276 232157881 1.760000e-152 549.0
24 TraesCS1A01G176600 chr1D 89.172 314 15 4 145 457 232159952 232159657 1.140000e-99 374.0
25 TraesCS1A01G176600 chr1D 91.346 208 10 5 918 1122 232156808 232156606 9.200000e-71 278.0
26 TraesCS1A01G176600 chr1D 94.400 125 7 0 1 125 42359531 42359407 3.430000e-45 193.0
27 TraesCS1A01G176600 chr2B 76.658 754 146 24 1139 1883 412776531 412775799 1.130000e-104 390.0
28 TraesCS1A01G176600 chr4B 75.613 693 147 15 1207 1891 94512215 94511537 1.160000e-84 324.0
29 TraesCS1A01G176600 chr5A 74.583 779 161 24 1134 1904 328954593 328955342 1.170000e-79 307.0
30 TraesCS1A01G176600 chr2A 98.824 170 2 0 3196 3365 147545745 147545914 1.520000e-78 303.0
31 TraesCS1A01G176600 chr7B 98.235 170 3 0 3196 3365 694160304 694160135 7.060000e-77 298.0
32 TraesCS1A01G176600 chr7B 84.000 225 36 0 2823 3047 602639696 602639920 2.030000e-52 217.0
33 TraesCS1A01G176600 chr5B 98.235 170 3 0 3196 3365 9270193 9270362 7.060000e-77 298.0
34 TraesCS1A01G176600 chr4A 98.235 170 3 0 3196 3365 27179987 27180156 7.060000e-77 298.0
35 TraesCS1A01G176600 chr4A 94.355 124 7 0 1 124 451013555 451013432 1.230000e-44 191.0
36 TraesCS1A01G176600 chrUn 97.647 170 4 0 3196 3365 464545930 464545761 3.280000e-75 292.0
37 TraesCS1A01G176600 chr6B 97.059 170 5 0 3196 3365 127371843 127371674 1.530000e-73 287.0
38 TraesCS1A01G176600 chr7D 93.651 126 8 0 1 126 175353571 175353446 4.430000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G176600 chr1A 316892342 316895706 3364 False 6215.000000 6215 100.000000 1 3365 1 chr1A.!!$F3 3364
1 TraesCS1A01G176600 chr1A 392522330 392523182 852 True 1284.000000 1284 93.816000 2294 3149 1 chr1A.!!$R1 855
2 TraesCS1A01G176600 chr6A 129345487 129347519 2032 False 3343.000000 3343 96.429000 1125 3149 1 chr6A.!!$F1 2024
3 TraesCS1A01G176600 chr1B 269303822 269305857 2035 True 3055.000000 3055 93.879000 1127 3149 1 chr1B.!!$R1 2022
4 TraesCS1A01G176600 chr1B 367425471 367428713 3242 True 322.575000 774 91.946750 124 1122 4 chr1B.!!$R2 998
5 TraesCS1A01G176600 chr5D 555478538 555480571 2033 False 2418.000000 2418 88.287000 1126 3149 1 chr5D.!!$F1 2023
6 TraesCS1A01G176600 chr7A 30218246 30220214 1968 True 1559.000000 2141 95.766000 1127 3149 2 chr7A.!!$R2 2022
7 TraesCS1A01G176600 chr7A 482197540 482198128 588 False 989.000000 989 96.944000 2561 3149 1 chr7A.!!$F1 588
8 TraesCS1A01G176600 chr3B 772139996 772140624 628 True 996.000000 996 95.238000 2521 3149 1 chr3B.!!$R1 628
9 TraesCS1A01G176600 chr1D 232156606 232159952 3346 True 400.333333 549 90.812333 145 1122 3 chr1D.!!$R2 977
10 TraesCS1A01G176600 chr2B 412775799 412776531 732 True 390.000000 390 76.658000 1139 1883 1 chr2B.!!$R1 744
11 TraesCS1A01G176600 chr4B 94511537 94512215 678 True 324.000000 324 75.613000 1207 1891 1 chr4B.!!$R1 684
12 TraesCS1A01G176600 chr5A 328954593 328955342 749 False 307.000000 307 74.583000 1134 1904 1 chr5A.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 476 0.111832 AGGACCACACAGGAGTCGTA 59.888 55.0 0.0 0.0 41.22 3.43 F
1913 6598 0.109342 CCAGTGCAAGAACACCTCCT 59.891 55.0 0.0 0.0 41.67 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 6795 1.297967 CGTCGCAGTCATCTCGGAG 60.298 63.158 0.0 0.0 0.0 4.63 R
3176 7898 0.031414 GGGGACAGGACCTAGGCTTA 60.031 60.000 9.3 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.931661 ACGGAAGTGTCGTATATGGAAT 57.068 40.909 0.00 0.00 46.97 3.01
29 30 6.395426 ACGGAAGTGTCGTATATGGAATAA 57.605 37.500 0.00 0.00 46.97 1.40
30 31 6.808829 ACGGAAGTGTCGTATATGGAATAAA 58.191 36.000 0.00 0.00 46.97 1.40
31 32 7.267128 ACGGAAGTGTCGTATATGGAATAAAA 58.733 34.615 0.00 0.00 46.97 1.52
32 33 7.929785 ACGGAAGTGTCGTATATGGAATAAAAT 59.070 33.333 0.00 0.00 46.97 1.82
33 34 8.770828 CGGAAGTGTCGTATATGGAATAAAATT 58.229 33.333 0.00 0.00 29.06 1.82
54 55 9.462606 AAAATTTAGGACTAGTGTCAAATAGGG 57.537 33.333 0.00 0.00 44.61 3.53
55 56 7.989947 ATTTAGGACTAGTGTCAAATAGGGA 57.010 36.000 0.00 0.00 44.61 4.20
56 57 7.801893 TTTAGGACTAGTGTCAAATAGGGAA 57.198 36.000 0.00 0.00 44.61 3.97
57 58 7.801893 TTAGGACTAGTGTCAAATAGGGAAA 57.198 36.000 0.00 0.00 44.61 3.13
58 59 6.697641 AGGACTAGTGTCAAATAGGGAAAA 57.302 37.500 0.00 0.00 44.61 2.29
59 60 7.086685 AGGACTAGTGTCAAATAGGGAAAAA 57.913 36.000 0.00 0.00 44.61 1.94
138 139 4.667519 TTTCTCTAACCCTTATCGCTCC 57.332 45.455 0.00 0.00 0.00 4.70
140 141 3.223435 TCTCTAACCCTTATCGCTCCTG 58.777 50.000 0.00 0.00 0.00 3.86
173 174 2.737679 GCAAAGCTCATGCCATCCTTTC 60.738 50.000 12.25 0.00 40.80 2.62
230 232 0.251165 ACCAACACCAAATCCTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
253 255 2.695055 CGTGATTACGTGGCGCAG 59.305 61.111 10.83 1.82 44.99 5.18
254 256 2.798501 CGTGATTACGTGGCGCAGG 61.799 63.158 10.83 3.74 44.99 4.85
255 257 2.125310 TGATTACGTGGCGCAGGG 60.125 61.111 10.83 0.00 0.00 4.45
256 258 2.895372 GATTACGTGGCGCAGGGG 60.895 66.667 10.83 0.00 0.00 4.79
295 304 2.277373 CCGTCGCGAGCTAGACAC 60.277 66.667 10.24 0.00 37.23 3.67
334 476 0.111832 AGGACCACACAGGAGTCGTA 59.888 55.000 0.00 0.00 41.22 3.43
336 478 2.025605 AGGACCACACAGGAGTCGTATA 60.026 50.000 0.00 0.00 41.22 1.47
346 488 3.005791 CAGGAGTCGTATATGTGCATGGA 59.994 47.826 0.00 0.00 0.00 3.41
388 530 2.045045 CGGGGATTTGCAGCCTGA 60.045 61.111 0.00 0.00 0.00 3.86
410 552 2.363038 TGATAGATGCTGCCATTTTGCC 59.637 45.455 0.00 0.00 0.00 4.52
429 571 2.927014 GCCATCGTTTCAGAGTCGTCTT 60.927 50.000 0.00 0.00 0.00 3.01
459 601 4.481112 CGCATGCTGTTTCGCCCC 62.481 66.667 17.13 0.00 0.00 5.80
487 629 5.526846 AGGTAACCGTTCGAATGTTGTAAAA 59.473 36.000 20.07 3.61 37.17 1.52
488 630 6.038050 AGGTAACCGTTCGAATGTTGTAAAAA 59.962 34.615 20.07 3.06 37.17 1.94
489 631 6.357766 GGTAACCGTTCGAATGTTGTAAAAAG 59.642 38.462 20.07 5.06 0.00 2.27
490 632 5.488645 ACCGTTCGAATGTTGTAAAAAGT 57.511 34.783 15.92 0.99 0.00 2.66
492 634 6.421405 ACCGTTCGAATGTTGTAAAAAGTAC 58.579 36.000 15.92 0.00 0.00 2.73
494 636 6.906143 CCGTTCGAATGTTGTAAAAAGTACAA 59.094 34.615 15.92 0.00 35.33 2.41
583 4165 2.818274 GGGTGAACGGGCGATGTC 60.818 66.667 0.00 0.00 0.00 3.06
590 4172 2.880879 CGGGCGATGTCACTGTCG 60.881 66.667 0.00 0.00 40.62 4.35
621 4208 1.135402 CGGCCAACCAGTAGAATTTGC 60.135 52.381 2.24 0.00 34.57 3.68
630 4217 6.017400 ACCAGTAGAATTTGCTTTGACATG 57.983 37.500 0.00 0.00 0.00 3.21
701 4291 1.541379 TCGGAGAATTGACAGACGGA 58.459 50.000 0.00 0.00 0.00 4.69
704 4294 1.201647 GGAGAATTGACAGACGGACGA 59.798 52.381 0.00 0.00 0.00 4.20
705 4295 2.251893 GAGAATTGACAGACGGACGAC 58.748 52.381 0.00 0.00 0.00 4.34
760 4350 1.017387 CGGCTTGGTAAGAATCTGCC 58.983 55.000 0.00 0.00 35.94 4.85
790 4380 2.327343 TGCAGGTGCGCATCTGTTC 61.327 57.895 41.80 30.10 45.83 3.18
981 5661 4.142381 GCAGAGGCCAAATTACTTACTTGG 60.142 45.833 5.01 0.00 42.17 3.61
992 5672 8.932791 CAAATTACTTACTTGGACGTAAGATGT 58.067 33.333 15.30 3.73 45.78 3.06
993 5673 8.475331 AATTACTTACTTGGACGTAAGATGTG 57.525 34.615 15.30 0.00 45.78 3.21
1005 5688 5.184064 CGTAAGATGTGGTGCATATGGCG 62.184 52.174 4.56 0.00 44.42 5.69
1039 5722 1.672881 CTTCTTGGCTGCTTAATCCCG 59.327 52.381 0.00 0.00 0.00 5.14
1077 5760 2.162208 CGAAAGGAACACCATGTCCATG 59.838 50.000 3.17 0.14 38.51 3.66
1236 5919 3.626996 CTCCCTTGCATCACCGCCA 62.627 63.158 0.00 0.00 0.00 5.69
1779 6462 2.970639 CATCACCGTCGGACCTGT 59.029 61.111 20.51 0.00 0.00 4.00
1780 6463 1.940883 GCATCACCGTCGGACCTGTA 61.941 60.000 20.51 0.00 0.00 2.74
1907 6592 1.165907 CCGAAGCCAGTGCAAGAACA 61.166 55.000 0.00 0.00 41.13 3.18
1913 6598 0.109342 CCAGTGCAAGAACACCTCCT 59.891 55.000 0.00 0.00 41.67 3.69
2031 6716 3.771160 GTCCGTGGCTGGGACGAT 61.771 66.667 10.90 0.00 44.04 3.73
2103 6788 2.202946 GGCCAAGGCTCTCGCTAC 60.203 66.667 11.40 0.00 41.60 3.58
2104 6789 2.583593 GCCAAGGCTCTCGCTACG 60.584 66.667 3.29 0.00 38.26 3.51
2105 6790 3.064987 GCCAAGGCTCTCGCTACGA 62.065 63.158 3.29 0.00 38.26 3.43
2106 6791 1.736586 CCAAGGCTCTCGCTACGAT 59.263 57.895 0.00 0.00 34.61 3.73
2107 6792 0.318275 CCAAGGCTCTCGCTACGATC 60.318 60.000 0.00 0.00 34.61 3.69
2108 6793 0.658829 CAAGGCTCTCGCTACGATCG 60.659 60.000 14.88 14.88 34.61 3.69
2109 6794 1.787057 AAGGCTCTCGCTACGATCGG 61.787 60.000 20.98 3.26 34.61 4.18
2110 6795 2.427740 GCTCTCGCTACGATCGGC 60.428 66.667 20.98 13.07 34.61 5.54
2111 6796 2.899044 GCTCTCGCTACGATCGGCT 61.899 63.158 20.98 1.14 34.61 5.52
2112 6797 1.205568 CTCTCGCTACGATCGGCTC 59.794 63.158 20.98 6.38 34.61 4.70
2345 7059 0.101399 CTTCTCCGCGCACTACTCAT 59.899 55.000 8.75 0.00 0.00 2.90
2466 7180 1.573108 CCCTTCCTCAACTGCTCCTA 58.427 55.000 0.00 0.00 0.00 2.94
2472 7186 2.912956 TCCTCAACTGCTCCTAATTGGT 59.087 45.455 0.00 0.00 37.07 3.67
2483 7197 1.132262 CCTAATTGGTTGCATCGCGTT 59.868 47.619 5.77 0.00 0.00 4.84
2558 7279 4.498520 CCGCCTCGTCTCATGCGT 62.499 66.667 0.00 0.00 45.18 5.24
2659 7380 4.699522 GCGAACGCCCACCTCCTT 62.700 66.667 8.03 0.00 34.56 3.36
2704 7425 2.031919 AATGAGGTCGCCAACGCA 59.968 55.556 0.00 0.00 39.84 5.24
3071 7793 3.494045 GCAAAATTAGCGGAGAAGCTT 57.506 42.857 0.00 0.00 46.80 3.74
3152 7874 5.689383 ACAAGTATGTCACATTGTTGACC 57.311 39.130 15.45 3.27 44.63 4.02
3153 7875 5.129634 ACAAGTATGTCACATTGTTGACCA 58.870 37.500 15.45 5.89 44.63 4.02
3154 7876 5.592282 ACAAGTATGTCACATTGTTGACCAA 59.408 36.000 15.45 0.00 44.63 3.67
3155 7877 6.096141 ACAAGTATGTCACATTGTTGACCAAA 59.904 34.615 15.45 1.19 44.63 3.28
3156 7878 6.899393 AGTATGTCACATTGTTGACCAAAT 57.101 33.333 0.00 6.49 44.63 2.32
3157 7879 6.913170 AGTATGTCACATTGTTGACCAAATC 58.087 36.000 0.00 4.46 44.63 2.17
3158 7880 5.787953 ATGTCACATTGTTGACCAAATCA 57.212 34.783 13.30 0.00 44.63 2.57
3159 7881 5.588958 TGTCACATTGTTGACCAAATCAA 57.411 34.783 13.30 0.00 44.63 2.57
3166 7888 2.649531 TTGACCAAATCAAGGACGGT 57.350 45.000 0.00 0.00 42.62 4.83
3167 7889 1.890876 TGACCAAATCAAGGACGGTG 58.109 50.000 0.00 0.00 33.02 4.94
3168 7890 1.418264 TGACCAAATCAAGGACGGTGA 59.582 47.619 0.00 0.00 33.02 4.02
3169 7891 2.158740 TGACCAAATCAAGGACGGTGAA 60.159 45.455 0.00 0.00 33.02 3.18
3170 7892 3.081804 GACCAAATCAAGGACGGTGAAT 58.918 45.455 0.00 0.00 0.00 2.57
3171 7893 2.819608 ACCAAATCAAGGACGGTGAATG 59.180 45.455 0.00 0.00 0.00 2.67
3172 7894 2.164219 CCAAATCAAGGACGGTGAATGG 59.836 50.000 0.00 0.00 32.82 3.16
3173 7895 3.081061 CAAATCAAGGACGGTGAATGGA 58.919 45.455 0.00 0.00 0.00 3.41
3174 7896 2.403252 ATCAAGGACGGTGAATGGAC 57.597 50.000 0.00 0.00 0.00 4.02
3175 7897 1.052617 TCAAGGACGGTGAATGGACA 58.947 50.000 0.00 0.00 0.00 4.02
3176 7898 1.628340 TCAAGGACGGTGAATGGACAT 59.372 47.619 0.00 0.00 0.00 3.06
3177 7899 2.835156 TCAAGGACGGTGAATGGACATA 59.165 45.455 0.00 0.00 0.00 2.29
3178 7900 3.262151 TCAAGGACGGTGAATGGACATAA 59.738 43.478 0.00 0.00 0.00 1.90
3179 7901 3.543680 AGGACGGTGAATGGACATAAG 57.456 47.619 0.00 0.00 0.00 1.73
3180 7902 1.940613 GGACGGTGAATGGACATAAGC 59.059 52.381 0.00 0.00 0.00 3.09
3181 7903 1.940613 GACGGTGAATGGACATAAGCC 59.059 52.381 0.00 0.00 0.00 4.35
3182 7904 1.559682 ACGGTGAATGGACATAAGCCT 59.440 47.619 0.00 0.00 0.00 4.58
3183 7905 2.769663 ACGGTGAATGGACATAAGCCTA 59.230 45.455 0.00 0.00 0.00 3.93
3184 7906 3.181465 ACGGTGAATGGACATAAGCCTAG 60.181 47.826 0.00 0.00 0.00 3.02
3185 7907 3.744660 GGTGAATGGACATAAGCCTAGG 58.255 50.000 3.67 3.67 0.00 3.02
3186 7908 3.136626 GGTGAATGGACATAAGCCTAGGT 59.863 47.826 11.31 0.00 0.00 3.08
3187 7909 4.381411 GTGAATGGACATAAGCCTAGGTC 58.619 47.826 11.31 2.66 37.97 3.85
3192 7914 3.737032 GACATAAGCCTAGGTCCTGTC 57.263 52.381 11.31 13.92 33.60 3.51
3193 7915 2.365941 GACATAAGCCTAGGTCCTGTCC 59.634 54.545 11.31 0.00 33.60 4.02
3194 7916 1.694696 CATAAGCCTAGGTCCTGTCCC 59.305 57.143 11.31 0.00 0.00 4.46
3195 7917 0.031414 TAAGCCTAGGTCCTGTCCCC 60.031 60.000 11.31 0.00 0.00 4.81
3196 7918 3.155167 GCCTAGGTCCTGTCCCCG 61.155 72.222 11.31 0.00 0.00 5.73
3197 7919 3.155167 CCTAGGTCCTGTCCCCGC 61.155 72.222 0.00 0.00 0.00 6.13
3198 7920 3.155167 CTAGGTCCTGTCCCCGCC 61.155 72.222 0.00 0.00 0.00 6.13
3199 7921 4.791069 TAGGTCCTGTCCCCGCCC 62.791 72.222 0.00 0.00 0.00 6.13
3238 7960 4.851214 GCCGCCTCTCTCCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
3239 7961 2.520741 CCGCCTCTCTCCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
3240 7962 2.520741 CGCCTCTCTCCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
3241 7963 3.024217 GCCTCTCTCCTCCCTCCT 58.976 66.667 0.00 0.00 0.00 3.69
3242 7964 1.152546 GCCTCTCTCCTCCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
3243 7965 1.655114 GCCTCTCTCCTCCCTCCTCT 61.655 65.000 0.00 0.00 0.00 3.69
3244 7966 0.185901 CCTCTCTCCTCCCTCCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
3245 7967 0.468029 CTCTCTCCTCCCTCCTCTGC 60.468 65.000 0.00 0.00 0.00 4.26
3246 7968 1.457455 CTCTCCTCCCTCCTCTGCC 60.457 68.421 0.00 0.00 0.00 4.85
3247 7969 2.445654 CTCCTCCCTCCTCTGCCC 60.446 72.222 0.00 0.00 0.00 5.36
3248 7970 3.284251 TCCTCCCTCCTCTGCCCA 61.284 66.667 0.00 0.00 0.00 5.36
3249 7971 3.086600 CCTCCCTCCTCTGCCCAC 61.087 72.222 0.00 0.00 0.00 4.61
3250 7972 3.086600 CTCCCTCCTCTGCCCACC 61.087 72.222 0.00 0.00 0.00 4.61
3251 7973 3.615811 TCCCTCCTCTGCCCACCT 61.616 66.667 0.00 0.00 0.00 4.00
3252 7974 3.086600 CCCTCCTCTGCCCACCTC 61.087 72.222 0.00 0.00 0.00 3.85
3253 7975 3.086600 CCTCCTCTGCCCACCTCC 61.087 72.222 0.00 0.00 0.00 4.30
3254 7976 3.086600 CTCCTCTGCCCACCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
3255 7977 3.615811 TCCTCTGCCCACCTCCCT 61.616 66.667 0.00 0.00 0.00 4.20
3256 7978 3.086600 CCTCTGCCCACCTCCCTC 61.087 72.222 0.00 0.00 0.00 4.30
3257 7979 3.465403 CTCTGCCCACCTCCCTCG 61.465 72.222 0.00 0.00 0.00 4.63
3321 8043 4.678743 GCGGTGGGGCCTTCCTTT 62.679 66.667 0.84 0.00 35.33 3.11
3322 8044 2.361230 CGGTGGGGCCTTCCTTTC 60.361 66.667 0.84 0.00 35.33 2.62
3323 8045 2.037367 GGTGGGGCCTTCCTTTCC 59.963 66.667 0.84 0.00 35.33 3.13
3324 8046 2.037367 GTGGGGCCTTCCTTTCCC 59.963 66.667 0.84 0.00 39.81 3.97
3327 8049 2.684104 GGGCCTTCCTTTCCCCTC 59.316 66.667 0.84 0.00 34.59 4.30
3328 8050 2.684104 GGCCTTCCTTTCCCCTCC 59.316 66.667 0.00 0.00 0.00 4.30
3329 8051 2.272471 GCCTTCCTTTCCCCTCCG 59.728 66.667 0.00 0.00 0.00 4.63
3330 8052 2.272471 CCTTCCTTTCCCCTCCGC 59.728 66.667 0.00 0.00 0.00 5.54
3331 8053 2.272471 CTTCCTTTCCCCTCCGCC 59.728 66.667 0.00 0.00 0.00 6.13
3332 8054 3.335729 TTCCTTTCCCCTCCGCCC 61.336 66.667 0.00 0.00 0.00 6.13
3333 8055 4.667935 TCCTTTCCCCTCCGCCCA 62.668 66.667 0.00 0.00 0.00 5.36
3334 8056 3.420482 CCTTTCCCCTCCGCCCAT 61.420 66.667 0.00 0.00 0.00 4.00
3335 8057 2.124151 CTTTCCCCTCCGCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
3336 8058 3.721370 CTTTCCCCTCCGCCCATGG 62.721 68.421 4.14 4.14 0.00 3.66
3340 8062 3.492353 CCCTCCGCCCATGGTCAT 61.492 66.667 11.73 0.00 0.00 3.06
3341 8063 2.203252 CCTCCGCCCATGGTCATG 60.203 66.667 11.73 4.09 38.51 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.604875 ATACGACACTTCCGTCCATTT 57.395 42.857 0.00 0.00 40.95 2.32
1 2 4.500887 CCATATACGACACTTCCGTCCATT 60.501 45.833 0.00 0.00 40.95 3.16
2 3 3.005472 CCATATACGACACTTCCGTCCAT 59.995 47.826 0.00 0.00 40.95 3.41
3 4 2.359848 CCATATACGACACTTCCGTCCA 59.640 50.000 0.00 0.00 40.95 4.02
4 5 2.620115 TCCATATACGACACTTCCGTCC 59.380 50.000 0.00 0.00 40.95 4.79
5 6 3.976793 TCCATATACGACACTTCCGTC 57.023 47.619 0.00 0.00 40.95 4.79
6 7 4.931661 ATTCCATATACGACACTTCCGT 57.068 40.909 0.00 0.00 43.26 4.69
7 8 7.703298 TTTTATTCCATATACGACACTTCCG 57.297 36.000 0.00 0.00 0.00 4.30
28 29 9.462606 CCCTATTTGACACTAGTCCTAAATTTT 57.537 33.333 11.01 0.00 44.33 1.82
29 30 8.832735 TCCCTATTTGACACTAGTCCTAAATTT 58.167 33.333 11.01 0.00 44.33 1.82
30 31 8.388656 TCCCTATTTGACACTAGTCCTAAATT 57.611 34.615 11.01 0.00 44.33 1.82
31 32 7.989947 TCCCTATTTGACACTAGTCCTAAAT 57.010 36.000 0.00 2.97 44.33 1.40
32 33 7.801893 TTCCCTATTTGACACTAGTCCTAAA 57.198 36.000 0.00 0.00 44.33 1.85
33 34 7.801893 TTTCCCTATTTGACACTAGTCCTAA 57.198 36.000 0.00 0.00 44.33 2.69
34 35 7.801893 TTTTCCCTATTTGACACTAGTCCTA 57.198 36.000 0.00 0.00 44.33 2.94
35 36 6.697641 TTTTCCCTATTTGACACTAGTCCT 57.302 37.500 0.00 0.00 44.33 3.85
109 110 9.106070 GCGATAAGGGTTAGAGAAAATTTCTTA 57.894 33.333 9.84 2.30 40.87 2.10
110 111 7.829706 AGCGATAAGGGTTAGAGAAAATTTCTT 59.170 33.333 9.84 3.19 40.87 2.52
111 112 7.339482 AGCGATAAGGGTTAGAGAAAATTTCT 58.661 34.615 8.12 8.12 44.21 2.52
112 113 7.254829 GGAGCGATAAGGGTTAGAGAAAATTTC 60.255 40.741 0.00 0.00 0.00 2.17
113 114 6.542735 GGAGCGATAAGGGTTAGAGAAAATTT 59.457 38.462 0.00 0.00 0.00 1.82
114 115 6.056236 GGAGCGATAAGGGTTAGAGAAAATT 58.944 40.000 0.00 0.00 0.00 1.82
115 116 5.367060 AGGAGCGATAAGGGTTAGAGAAAAT 59.633 40.000 0.00 0.00 0.00 1.82
116 117 4.715297 AGGAGCGATAAGGGTTAGAGAAAA 59.285 41.667 0.00 0.00 0.00 2.29
117 118 4.099573 CAGGAGCGATAAGGGTTAGAGAAA 59.900 45.833 0.00 0.00 0.00 2.52
118 119 3.637229 CAGGAGCGATAAGGGTTAGAGAA 59.363 47.826 0.00 0.00 0.00 2.87
119 120 3.117625 TCAGGAGCGATAAGGGTTAGAGA 60.118 47.826 0.00 0.00 0.00 3.10
120 121 3.223435 TCAGGAGCGATAAGGGTTAGAG 58.777 50.000 0.00 0.00 0.00 2.43
121 122 3.223435 CTCAGGAGCGATAAGGGTTAGA 58.777 50.000 0.00 0.00 0.00 2.10
122 123 2.288518 GCTCAGGAGCGATAAGGGTTAG 60.289 54.545 5.41 0.00 45.29 2.34
138 139 2.353889 AGCTTTGCATGTATTCGCTCAG 59.646 45.455 0.00 0.00 0.00 3.35
140 141 2.352651 TGAGCTTTGCATGTATTCGCTC 59.647 45.455 16.80 16.80 41.88 5.03
143 144 3.040795 GCATGAGCTTTGCATGTATTCG 58.959 45.455 15.45 0.00 43.79 3.34
173 174 1.135199 GGCATGCAGATGTTGTTCCAG 60.135 52.381 21.36 0.00 31.50 3.86
238 240 2.125310 CCCTGCGCCACGTAATCA 60.125 61.111 4.18 0.00 0.00 2.57
253 255 1.632965 AATAACTCGTCAGGGGCCCC 61.633 60.000 35.90 35.90 0.00 5.80
254 256 0.179054 GAATAACTCGTCAGGGGCCC 60.179 60.000 17.12 17.12 0.00 5.80
255 257 0.529992 CGAATAACTCGTCAGGGGCC 60.530 60.000 0.00 0.00 42.89 5.80
256 258 2.973420 CGAATAACTCGTCAGGGGC 58.027 57.895 0.00 0.00 42.89 5.80
295 304 5.928264 GTCCTTTGATCCAGATTTTTGGTTG 59.072 40.000 0.00 0.00 39.35 3.77
388 530 3.006537 GGCAAAATGGCAGCATCTATCAT 59.993 43.478 0.00 0.00 43.14 2.45
410 552 3.565516 TGAAGACGACTCTGAAACGATG 58.434 45.455 9.45 0.00 0.00 3.84
429 571 0.955428 GCATGCGGAAGGTGAGTTGA 60.955 55.000 0.00 0.00 0.00 3.18
459 601 1.393539 CATTCGAACGGTTACCTGCTG 59.606 52.381 0.00 0.00 0.00 4.41
487 629 7.949903 AAAAACAAAAAGAACGGTTGTACTT 57.050 28.000 0.00 0.00 34.46 2.24
514 656 7.632721 CAACAAAAAGAGCGGTAGTACTTTAA 58.367 34.615 0.00 0.00 33.21 1.52
515 657 6.293027 GCAACAAAAAGAGCGGTAGTACTTTA 60.293 38.462 0.00 0.00 33.21 1.85
519 661 3.663493 CGCAACAAAAAGAGCGGTAGTAC 60.663 47.826 0.00 0.00 45.83 2.73
520 662 2.477375 CGCAACAAAAAGAGCGGTAGTA 59.523 45.455 0.00 0.00 45.83 1.82
521 663 1.263217 CGCAACAAAAAGAGCGGTAGT 59.737 47.619 0.00 0.00 45.83 2.73
522 664 1.950472 CGCAACAAAAAGAGCGGTAG 58.050 50.000 0.00 0.00 45.83 3.18
528 670 1.539776 GCCGCACGCAACAAAAAGAG 61.540 55.000 0.00 0.00 37.47 2.85
529 671 1.587613 GCCGCACGCAACAAAAAGA 60.588 52.632 0.00 0.00 37.47 2.52
530 672 2.584967 GGCCGCACGCAACAAAAAG 61.585 57.895 0.00 0.00 40.31 2.27
583 4165 4.293648 TCACCGTGGCCGACAGTG 62.294 66.667 12.74 12.74 35.63 3.66
621 4208 2.753966 CCGGCTCCGCATGTCAAAG 61.754 63.158 2.18 0.00 38.24 2.77
677 4264 4.504461 CCGTCTGTCAATTCTCCGAATAAG 59.496 45.833 0.00 0.00 0.00 1.73
690 4277 1.280746 GTCGTCGTCCGTCTGTCAA 59.719 57.895 0.00 0.00 37.94 3.18
691 4278 2.941333 GTCGTCGTCCGTCTGTCA 59.059 61.111 0.00 0.00 37.94 3.58
704 4294 2.482296 AAAATCCTCGCGTCCGTCGT 62.482 55.000 5.77 0.00 42.13 4.34
705 4295 0.523968 TAAAATCCTCGCGTCCGTCG 60.524 55.000 5.77 0.00 43.12 5.12
760 4350 1.301244 ACCTGCACACTTCTCTGCG 60.301 57.895 0.00 0.00 36.08 5.18
790 4380 0.730834 CTCGCCTCGTCTTCACACAG 60.731 60.000 0.00 0.00 0.00 3.66
915 4505 1.400494 ACGTTTGGAAGTGTTGACAGC 59.600 47.619 0.00 0.00 0.00 4.40
981 5661 3.494626 CCATATGCACCACATCTTACGTC 59.505 47.826 0.00 0.00 40.38 4.34
1039 5722 1.011463 CGACAGCGCATTCTGCATC 60.011 57.895 11.47 0.00 45.36 3.91
1055 5738 1.418264 TGGACATGGTGTTCCTTTCGA 59.582 47.619 0.00 0.00 34.23 3.71
1253 5936 1.600636 CGAGCAAACCTTGGGCTGA 60.601 57.895 0.00 0.00 38.15 4.26
1947 6632 5.618236 CATAGAATCCTTCCATCAGCTTCA 58.382 41.667 0.00 0.00 0.00 3.02
2106 6791 2.775856 GCAGTCATCTCGGAGCCGA 61.776 63.158 11.55 11.55 46.87 5.54
2107 6792 2.279120 GCAGTCATCTCGGAGCCG 60.279 66.667 1.74 1.74 41.35 5.52
2108 6793 2.279120 CGCAGTCATCTCGGAGCC 60.279 66.667 0.00 0.00 0.00 4.70
2109 6794 1.587613 GTCGCAGTCATCTCGGAGC 60.588 63.158 0.00 0.00 0.00 4.70
2110 6795 1.297967 CGTCGCAGTCATCTCGGAG 60.298 63.158 0.00 0.00 0.00 4.63
2111 6796 2.761195 CCGTCGCAGTCATCTCGGA 61.761 63.158 0.00 0.00 40.29 4.55
2112 6797 2.278206 CCGTCGCAGTCATCTCGG 60.278 66.667 0.00 0.00 0.00 4.63
2286 6981 3.981416 CGAGTCTCAATGTTGTTCTTCGA 59.019 43.478 0.00 0.00 0.00 3.71
2345 7059 1.601430 CTCAGCTCGATGATGTCTCGA 59.399 52.381 0.00 0.00 42.44 4.04
2466 7180 1.467374 GCTAACGCGATGCAACCAATT 60.467 47.619 15.93 0.00 0.00 2.32
2483 7197 4.835456 AATCCCAGGCCCGGGCTA 62.835 66.667 42.70 23.80 46.92 3.93
2558 7279 0.607217 TAGTCGAGGAGGTTGCACGA 60.607 55.000 0.00 0.00 0.00 4.35
2596 7317 0.036732 GCTGTTGGTGGATGGAGTCA 59.963 55.000 0.00 0.00 0.00 3.41
2671 7392 3.645212 CCTCATTCTTCTGATAGGAGGCA 59.355 47.826 0.00 0.00 0.00 4.75
2704 7425 1.559682 ACAGATTAGTCGGCCCATTGT 59.440 47.619 0.00 0.00 0.00 2.71
2831 7552 0.545646 GGGAGCTTTGAGGAGCAGAT 59.454 55.000 0.00 0.00 45.12 2.90
3149 7871 2.178912 TCACCGTCCTTGATTTGGTC 57.821 50.000 0.00 0.00 0.00 4.02
3150 7872 2.649531 TTCACCGTCCTTGATTTGGT 57.350 45.000 0.00 0.00 0.00 3.67
3151 7873 2.164219 CCATTCACCGTCCTTGATTTGG 59.836 50.000 0.00 0.00 0.00 3.28
3152 7874 3.081061 TCCATTCACCGTCCTTGATTTG 58.919 45.455 0.00 0.00 0.00 2.32
3153 7875 3.081804 GTCCATTCACCGTCCTTGATTT 58.918 45.455 0.00 0.00 0.00 2.17
3154 7876 2.039746 TGTCCATTCACCGTCCTTGATT 59.960 45.455 0.00 0.00 0.00 2.57
3155 7877 1.628340 TGTCCATTCACCGTCCTTGAT 59.372 47.619 0.00 0.00 0.00 2.57
3156 7878 1.052617 TGTCCATTCACCGTCCTTGA 58.947 50.000 0.00 0.00 0.00 3.02
3157 7879 2.113860 ATGTCCATTCACCGTCCTTG 57.886 50.000 0.00 0.00 0.00 3.61
3158 7880 3.873910 CTTATGTCCATTCACCGTCCTT 58.126 45.455 0.00 0.00 0.00 3.36
3159 7881 2.420129 GCTTATGTCCATTCACCGTCCT 60.420 50.000 0.00 0.00 0.00 3.85
3160 7882 1.940613 GCTTATGTCCATTCACCGTCC 59.059 52.381 0.00 0.00 0.00 4.79
3161 7883 1.940613 GGCTTATGTCCATTCACCGTC 59.059 52.381 0.00 0.00 0.00 4.79
3162 7884 1.559682 AGGCTTATGTCCATTCACCGT 59.440 47.619 0.00 0.00 0.00 4.83
3163 7885 2.332063 AGGCTTATGTCCATTCACCG 57.668 50.000 0.00 0.00 0.00 4.94
3164 7886 3.136626 ACCTAGGCTTATGTCCATTCACC 59.863 47.826 9.30 0.00 0.00 4.02
3165 7887 4.381411 GACCTAGGCTTATGTCCATTCAC 58.619 47.826 9.30 0.00 0.00 3.18
3166 7888 3.391296 GGACCTAGGCTTATGTCCATTCA 59.609 47.826 20.71 0.00 41.58 2.57
3167 7889 3.648545 AGGACCTAGGCTTATGTCCATTC 59.351 47.826 25.25 5.47 43.30 2.67
3168 7890 3.392616 CAGGACCTAGGCTTATGTCCATT 59.607 47.826 25.25 8.97 43.30 3.16
3169 7891 2.975489 CAGGACCTAGGCTTATGTCCAT 59.025 50.000 25.25 12.33 43.30 3.41
3170 7892 2.292918 ACAGGACCTAGGCTTATGTCCA 60.293 50.000 25.25 0.00 43.30 4.02
3171 7893 2.365941 GACAGGACCTAGGCTTATGTCC 59.634 54.545 18.79 18.79 42.01 4.02
3172 7894 2.365941 GGACAGGACCTAGGCTTATGTC 59.634 54.545 20.64 20.64 35.88 3.06
3173 7895 2.399580 GGACAGGACCTAGGCTTATGT 58.600 52.381 9.30 8.95 0.00 2.29
3174 7896 1.694696 GGGACAGGACCTAGGCTTATG 59.305 57.143 9.30 5.50 0.00 1.90
3175 7897 1.414685 GGGGACAGGACCTAGGCTTAT 60.415 57.143 9.30 0.00 0.00 1.73
3176 7898 0.031414 GGGGACAGGACCTAGGCTTA 60.031 60.000 9.30 0.00 0.00 3.09
3177 7899 1.307084 GGGGACAGGACCTAGGCTT 60.307 63.158 9.30 0.00 0.00 4.35
3178 7900 2.369001 GGGGACAGGACCTAGGCT 59.631 66.667 9.30 0.00 0.00 4.58
3179 7901 3.155167 CGGGGACAGGACCTAGGC 61.155 72.222 9.30 1.17 0.00 3.93
3180 7902 3.155167 GCGGGGACAGGACCTAGG 61.155 72.222 7.41 7.41 0.00 3.02
3181 7903 3.155167 GGCGGGGACAGGACCTAG 61.155 72.222 0.00 0.00 0.00 3.02
3182 7904 4.791069 GGGCGGGGACAGGACCTA 62.791 72.222 0.00 0.00 0.00 3.08
3198 7920 3.489513 GGATGGGTTCCCCTCGGG 61.490 72.222 5.34 0.00 45.70 5.14
3199 7921 2.366972 AGGATGGGTTCCCCTCGG 60.367 66.667 5.34 0.00 46.81 4.63
3200 7922 2.911143 CAGGATGGGTTCCCCTCG 59.089 66.667 5.34 0.00 46.81 4.63
3221 7943 4.851214 AGGGAGGAGAGAGGCGGC 62.851 72.222 0.00 0.00 0.00 6.53
3222 7944 2.520741 GAGGGAGGAGAGAGGCGG 60.521 72.222 0.00 0.00 0.00 6.13
3223 7945 2.520741 GGAGGGAGGAGAGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
3224 7946 1.152546 GAGGAGGGAGGAGAGAGGC 60.153 68.421 0.00 0.00 0.00 4.70
3225 7947 0.185901 CAGAGGAGGGAGGAGAGAGG 59.814 65.000 0.00 0.00 0.00 3.69
3226 7948 0.468029 GCAGAGGAGGGAGGAGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
3227 7949 1.618030 GCAGAGGAGGGAGGAGAGA 59.382 63.158 0.00 0.00 0.00 3.10
3228 7950 1.457455 GGCAGAGGAGGGAGGAGAG 60.457 68.421 0.00 0.00 0.00 3.20
3229 7951 2.693017 GGCAGAGGAGGGAGGAGA 59.307 66.667 0.00 0.00 0.00 3.71
3230 7952 2.445654 GGGCAGAGGAGGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
3231 7953 3.284251 TGGGCAGAGGAGGGAGGA 61.284 66.667 0.00 0.00 0.00 3.71
3232 7954 3.086600 GTGGGCAGAGGAGGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
3233 7955 3.086600 GGTGGGCAGAGGAGGGAG 61.087 72.222 0.00 0.00 0.00 4.30
3234 7956 3.615811 AGGTGGGCAGAGGAGGGA 61.616 66.667 0.00 0.00 0.00 4.20
3235 7957 3.086600 GAGGTGGGCAGAGGAGGG 61.087 72.222 0.00 0.00 0.00 4.30
3236 7958 3.086600 GGAGGTGGGCAGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
3237 7959 3.086600 GGGAGGTGGGCAGAGGAG 61.087 72.222 0.00 0.00 0.00 3.69
3238 7960 3.615811 AGGGAGGTGGGCAGAGGA 61.616 66.667 0.00 0.00 0.00 3.71
3239 7961 3.086600 GAGGGAGGTGGGCAGAGG 61.087 72.222 0.00 0.00 0.00 3.69
3240 7962 3.465403 CGAGGGAGGTGGGCAGAG 61.465 72.222 0.00 0.00 0.00 3.35
3304 8026 4.678743 AAAGGAAGGCCCCACCGC 62.679 66.667 0.00 0.00 46.52 5.68
3305 8027 2.361230 GAAAGGAAGGCCCCACCG 60.361 66.667 0.00 0.00 46.52 4.94
3306 8028 2.037367 GGAAAGGAAGGCCCCACC 59.963 66.667 0.00 0.00 39.61 4.61
3307 8029 2.037367 GGGAAAGGAAGGCCCCAC 59.963 66.667 0.00 0.00 38.69 4.61
3310 8032 2.684104 GAGGGGAAAGGAAGGCCC 59.316 66.667 0.00 0.00 41.28 5.80
3311 8033 2.684104 GGAGGGGAAAGGAAGGCC 59.316 66.667 0.00 0.00 0.00 5.19
3312 8034 2.272471 CGGAGGGGAAAGGAAGGC 59.728 66.667 0.00 0.00 0.00 4.35
3313 8035 2.272471 GCGGAGGGGAAAGGAAGG 59.728 66.667 0.00 0.00 0.00 3.46
3314 8036 2.272471 GGCGGAGGGGAAAGGAAG 59.728 66.667 0.00 0.00 0.00 3.46
3315 8037 3.335729 GGGCGGAGGGGAAAGGAA 61.336 66.667 0.00 0.00 0.00 3.36
3316 8038 3.962530 ATGGGCGGAGGGGAAAGGA 62.963 63.158 0.00 0.00 0.00 3.36
3317 8039 3.420482 ATGGGCGGAGGGGAAAGG 61.420 66.667 0.00 0.00 0.00 3.11
3318 8040 2.124151 CATGGGCGGAGGGGAAAG 60.124 66.667 0.00 0.00 0.00 2.62
3319 8041 3.738481 CCATGGGCGGAGGGGAAA 61.738 66.667 2.85 0.00 0.00 3.13
3323 8045 3.492353 ATGACCATGGGCGGAGGG 61.492 66.667 18.09 0.00 0.00 4.30
3324 8046 2.203252 CATGACCATGGGCGGAGG 60.203 66.667 18.09 0.00 35.24 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.