AutoCloner

Multiple sequence alignment - TraesCS1A01G175800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G175800	chr1A	100.000	2862	0	0	1	2862	313743380	313746241	0.000000e+00	5286
1	TraesCS1A01G175800	chr1B	92.955	2555	120	26	330	2862	368551239	368548723	0.000000e+00	3666
2	TraesCS1A01G175800	chr1B	97.551	245	6	0	2	246	368551628	368551384	1.230000e-113	420
3	TraesCS1A01G175800	chr1D	93.229	2437	97	25	1	2399	233902610	233900204	0.000000e+00	3524
4	TraesCS1A01G175800	chr1D	86.181	398	42	3	2474	2862	233899955	233899562	4.410000e-113	418
5	TraesCS1A01G175800	chr2A	86.944	674	76	6	2152	2816	665683610	665684280	0.000000e+00	747
6	TraesCS1A01G175800	chr2A	88.950	181	15	2	1046	1226	573418644	573418819	4.800000e-53	219
7	TraesCS1A01G175800	chr2A	85.417	192	23	2	1035	1226	98887946	98887760	8.090000e-46	195
8	TraesCS1A01G175800	chr2A	86.614	127	16	1	1035	1161	98888771	98888646	3.850000e-29	139
9	TraesCS1A01G175800	chr5A	86.228	668	76	6	2151	2805	402121621	402122285	0.000000e+00	710
10	TraesCS1A01G175800	chr3B	85.757	667	79	8	2152	2805	279666722	279666059	0.000000e+00	691
11	TraesCS1A01G175800	chr3B	88.950	181	15	2	1046	1226	5770054	5769879	4.800000e-53	219
12	TraesCS1A01G175800	chr2D	85.241	664	85	5	2154	2805	561060598	561059936	0.000000e+00	671
13	TraesCS1A01G175800	chr2D	88.021	192	18	2	1035	1226	234337205	234337019	3.710000e-54	222
14	TraesCS1A01G175800	chr7D	84.627	670	84	8	2152	2805	104082294	104082960	0.000000e+00	649
15	TraesCS1A01G175800	chr7D	83.183	666	97	8	2152	2805	106365367	106366029	1.900000e-166	595
16	TraesCS1A01G175800	chr7B	84.361	665	88	6	2154	2805	621768194	621767533	3.110000e-179	638
17	TraesCS1A01G175800	chr2B	84.408	667	80	10	2152	2805	206686520	206685865	4.020000e-178	634
18	TraesCS1A01G175800	chr5D	83.333	666	85	7	2152	2805	313155939	313156590	2.460000e-165	592
19	TraesCS1A01G175800	chr5D	87.500	192	19	2	1035	1226	58253556	58253370	1.730000e-52	217
20	TraesCS1A01G175800	chr5D	90.780	141	13	0	1086	1226	17818171	17818031	3.760000e-44	189
21	TraesCS1A01G175800	chr7A	89.130	92	9	1	1035	1126	543536	543626	2.330000e-21	113

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G175800	chr1A	313743380	313746241	2861	False	5286	5286	100.000	1	2862	1	chr1A.!!$F1	2861
1	TraesCS1A01G175800	chr1B	368548723	368551628	2905	True	2043	3666	95.253	2	2862	2	chr1B.!!$R1	2860
2	TraesCS1A01G175800	chr1D	233899562	233902610	3048	True	1971	3524	89.705	1	2862	2	chr1D.!!$R1	2861
3	TraesCS1A01G175800	chr2A	665683610	665684280	670	False	747	747	86.944	2152	2816	1	chr2A.!!$F2	664
4	TraesCS1A01G175800	chr5A	402121621	402122285	664	False	710	710	86.228	2151	2805	1	chr5A.!!$F1	654
5	TraesCS1A01G175800	chr3B	279666059	279666722	663	True	691	691	85.757	2152	2805	1	chr3B.!!$R2	653
6	TraesCS1A01G175800	chr2D	561059936	561060598	662	True	671	671	85.241	2154	2805	1	chr2D.!!$R2	651
7	TraesCS1A01G175800	chr7D	104082294	104082960	666	False	649	649	84.627	2152	2805	1	chr7D.!!$F1	653
8	TraesCS1A01G175800	chr7D	106365367	106366029	662	False	595	595	83.183	2152	2805	1	chr7D.!!$F2	653
9	TraesCS1A01G175800	chr7B	621767533	621768194	661	True	638	638	84.361	2154	2805	1	chr7B.!!$R1	651
10	TraesCS1A01G175800	chr2B	206685865	206686520	655	True	634	634	84.408	2152	2805	1	chr2B.!!$R1	653
11	TraesCS1A01G175800	chr5D	313155939	313156590	651	False	592	592	83.333	2152	2805	1	chr5D.!!$F1	653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
777	855	0.036164	CTTGAACCCCATGACGGTCA	59.964	55.0	14.01	14.01	31.48	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2661	2974	1.110518	GTCCCGGCTTCCCAAAACAA	61.111	55.0	0.0	0.0	0.0	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
153	154	9.836076	AATACAAACGAAAGAAAAGCCTATTAC	57.164	29.630	0.00	0.00	0.00	1.89
240	241	9.019764	CACTATTTTAACAACCAAACAAGTGAG	57.980	33.333	0.00	0.00	33.65	3.51
242	243	2.559998	AACAACCAAACAAGTGAGCG	57.440	45.000	0.00	0.00	0.00	5.03
246	247	1.157870	ACCAAACAAGTGAGCGACCG	61.158	55.000	0.00	0.00	0.00	4.79
247	248	0.878523	CCAAACAAGTGAGCGACCGA	60.879	55.000	0.00	0.00	0.00	4.69
248	249	0.508641	CAAACAAGTGAGCGACCGAG	59.491	55.000	0.00	0.00	0.00	4.63
269	295	4.460263	AGTTACTTCTGCACATGGTTTGA	58.540	39.130	0.00	0.00	0.00	2.69
281	307	5.351189	GCACATGGTTTGAAACAAAACTCTT	59.649	36.000	10.53	0.00	39.51	2.85
315	348	2.117156	AGGTGCAATGAGCCGCATC	61.117	57.895	0.00	0.00	44.83	3.91
358	426	3.073274	ACCTGTGAATAGAACCCAAGC	57.927	47.619	0.00	0.00	0.00	4.01
378	446	1.597461	CTTGGTCGAACTCCCTCCC	59.403	63.158	0.33	0.00	0.00	4.30
381	449	2.679287	GTCGAACTCCCTCCCGGT	60.679	66.667	0.00	0.00	0.00	5.28
518	586	2.329678	CTGAGACCAGCGACCTAGCG	62.330	65.000	0.00	0.00	43.00	4.26
633	701	0.040499	AGGCGAGAAGGAGAGAGGTT	59.960	55.000	0.00	0.00	0.00	3.50
638	706	2.252714	GAGAAGGAGAGAGGTTGTGGT	58.747	52.381	0.00	0.00	0.00	4.16
769	838	0.251341	GTCACAGCCTTGAACCCCAT	60.251	55.000	0.00	0.00	0.00	4.00
775	853	1.378762	CCTTGAACCCCATGACGGT	59.621	57.895	0.00	0.00	34.07	4.83
776	854	0.676782	CCTTGAACCCCATGACGGTC	60.677	60.000	0.00	0.00	31.48	4.79
777	855	0.036164	CTTGAACCCCATGACGGTCA	59.964	55.000	14.01	14.01	31.48	4.02
778	856	0.036164	TTGAACCCCATGACGGTCAG	59.964	55.000	16.84	8.50	31.48	3.51
779	857	1.125093	TGAACCCCATGACGGTCAGT	61.125	55.000	16.84	5.98	31.48	3.41
780	858	0.036306	GAACCCCATGACGGTCAGTT	59.964	55.000	16.84	14.01	31.48	3.16
781	859	0.250727	AACCCCATGACGGTCAGTTG	60.251	55.000	16.84	10.51	31.48	3.16
782	860	1.377202	CCCCATGACGGTCAGTTGG	60.377	63.158	19.40	19.40	31.92	3.77
783	861	1.377202	CCCATGACGGTCAGTTGGG	60.377	63.158	27.02	27.02	42.63	4.12
811	889	3.433740	GGGCCTAGAATTTCGAATCTGGT	60.434	47.826	10.82	0.00	0.00	4.00
814	892	4.449405	GCCTAGAATTTCGAATCTGGTAGC	59.551	45.833	10.82	5.04	0.00	3.58
817	895	6.538742	CCTAGAATTTCGAATCTGGTAGCAAA	59.461	38.462	10.82	0.00	0.00	3.68
818	896	7.227512	CCTAGAATTTCGAATCTGGTAGCAAAT	59.772	37.037	10.82	0.00	0.00	2.32
819	897	7.396540	AGAATTTCGAATCTGGTAGCAAATT	57.603	32.000	0.00	0.00	0.00	1.82
820	898	8.506168	AGAATTTCGAATCTGGTAGCAAATTA	57.494	30.769	0.00	0.00	0.00	1.40
821	899	8.616076	AGAATTTCGAATCTGGTAGCAAATTAG	58.384	33.333	0.00	0.00	0.00	1.73
822	900	6.677781	TTTCGAATCTGGTAGCAAATTAGG	57.322	37.500	0.00	0.00	0.00	2.69
823	901	4.127171	TCGAATCTGGTAGCAAATTAGGC	58.873	43.478	0.00	0.00	0.00	3.93
824	902	3.251004	CGAATCTGGTAGCAAATTAGGCC	59.749	47.826	0.00	0.00	0.00	5.19
825	903	2.729028	TCTGGTAGCAAATTAGGCCC	57.271	50.000	0.00	0.00	0.00	5.80
826	904	1.919654	TCTGGTAGCAAATTAGGCCCA	59.080	47.619	0.00	0.00	0.00	5.36
827	905	2.310349	TCTGGTAGCAAATTAGGCCCAA	59.690	45.455	0.00	0.00	0.00	4.12
828	906	2.427095	CTGGTAGCAAATTAGGCCCAAC	59.573	50.000	0.00	0.00	0.00	3.77
829	907	2.225142	TGGTAGCAAATTAGGCCCAACA	60.225	45.455	0.00	0.00	0.00	3.33
830	908	2.427095	GGTAGCAAATTAGGCCCAACAG	59.573	50.000	0.00	0.00	0.00	3.16
831	909	2.603075	AGCAAATTAGGCCCAACAGA	57.397	45.000	0.00	0.00	0.00	3.41
832	910	2.450476	AGCAAATTAGGCCCAACAGAG	58.550	47.619	0.00	0.00	0.00	3.35
833	911	2.171003	GCAAATTAGGCCCAACAGAGT	58.829	47.619	0.00	0.00	0.00	3.24
834	912	2.094545	GCAAATTAGGCCCAACAGAGTG	60.095	50.000	0.00	0.00	0.00	3.51
840	936	0.329596	GGCCCAACAGAGTGAGGAAT	59.670	55.000	0.00	0.00	0.00	3.01
843	939	2.501723	GCCCAACAGAGTGAGGAATAGA	59.498	50.000	0.00	0.00	0.00	1.98
920	1017	2.282180	GGGGAACGAGGCTGCAAA	60.282	61.111	0.50	0.00	0.00	3.68
921	1018	1.901464	GGGGAACGAGGCTGCAAAA	60.901	57.895	0.50	0.00	0.00	2.44
1596	1699	1.533731	GAGAGGAGAGATTACGCCGAG	59.466	57.143	0.00	0.00	35.00	4.63
1873	1976	1.062587	CGACGATGATGCAAGGGTTTC	59.937	52.381	0.00	0.00	0.00	2.78
1927	2030	7.760340	GGATGATTACTGGAGGTACGATATTTC	59.240	40.741	0.00	0.00	0.00	2.17
1928	2031	7.591421	TGATTACTGGAGGTACGATATTTCA	57.409	36.000	0.00	0.00	0.00	2.69
1929	2032	8.190326	TGATTACTGGAGGTACGATATTTCAT	57.810	34.615	0.00	0.00	0.00	2.57
1930	2033	9.304335	TGATTACTGGAGGTACGATATTTCATA	57.696	33.333	0.00	0.00	0.00	2.15
1931	2034	9.790389	GATTACTGGAGGTACGATATTTCATAG	57.210	37.037	0.00	0.00	0.00	2.23
1932	2035	8.701908	TTACTGGAGGTACGATATTTCATAGT	57.298	34.615	0.00	0.00	0.00	2.12
1933	2036	6.982852	ACTGGAGGTACGATATTTCATAGTG	58.017	40.000	0.00	0.00	0.00	2.74
1945	2048	8.223769	CGATATTTCATAGTGCAATACCTGTTC	58.776	37.037	0.00	0.00	0.00	3.18
1960	2063	9.250624	CAATACCTGTTCGGTTTTAAATTTTGA	57.749	29.630	0.00	0.00	46.37	2.69
2046	2161	6.053005	TCATGTTTTACTCCGACTCTGTTTT	58.947	36.000	0.00	0.00	0.00	2.43
2056	2171	6.092259	ACTCCGACTCTGTTTTTATGTATTGC	59.908	38.462	0.00	0.00	0.00	3.56
2123	2238	4.020573	ACGTTCCATTGTTCTGATCCTGTA	60.021	41.667	0.00	0.00	0.00	2.74
2232	2349	0.392461	ACCCATCCACGGTTCGAATG	60.392	55.000	0.00	0.00	0.00	2.67
2266	2391	2.445427	CAACACACCATGCTAATCCCA	58.555	47.619	0.00	0.00	0.00	4.37
2308	2433	6.031751	ACTACACATGAGAAAGAGAGAACC	57.968	41.667	0.00	0.00	0.00	3.62
2355	2480	1.079127	CGAAGAAGACGGGGCACAT	60.079	57.895	0.00	0.00	0.00	3.21
2495	2792	0.539901	GCAGGATCTAGCCGGACCTA	60.540	60.000	5.05	0.00	0.00	3.08
2510	2807	3.305199	CGGACCTAAAGAAGAAGACGTGT	60.305	47.826	0.00	0.00	0.00	4.49
2671	2984	2.494530	GCCGCCACTTGTTTTGGGA	61.495	57.895	0.00	0.00	34.35	4.37
2678	2991	1.112916	ACTTGTTTTGGGAAGCCGGG	61.113	55.000	2.18	0.00	0.00	5.73
2800	3116	0.871722	CAAACCGTGCGGAGATTTCA	59.128	50.000	18.16	0.00	38.96	2.69
2816	3132	3.716195	CACCCCAGCCGATGACCA	61.716	66.667	0.00	0.00	0.00	4.02
2830	3146	0.977627	TGACCATGCGGAGAGTCCAT	60.978	55.000	6.65	0.00	35.91	3.41
2831	3147	0.179000	GACCATGCGGAGAGTCCATT	59.821	55.000	0.00	0.00	35.91	3.16
2833	3149	0.107508	CCATGCGGAGAGTCCATTGT	60.108	55.000	0.00	0.00	35.91	2.71
2835	3151	0.179100	ATGCGGAGAGTCCATTGTCG	60.179	55.000	0.00	0.00	35.91	4.35
2847	3163	3.194968	GTCCATTGTCGTAGGAAGGAGAA	59.805	47.826	0.00	0.00	32.30	2.87

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
153	154	9.277565	CTTAGTCACATTTTATTGAATTCGTGG	57.722	33.333	0.04	0.00	0.00	4.94
240	241	0.388134	TGCAGAAGTAACTCGGTCGC	60.388	55.000	0.00	0.00	0.00	5.19
242	243	2.433868	TGTGCAGAAGTAACTCGGTC	57.566	50.000	0.00	0.00	0.00	4.79
246	247	4.515191	TCAAACCATGTGCAGAAGTAACTC	59.485	41.667	0.00	0.00	0.00	3.01
247	248	4.460263	TCAAACCATGTGCAGAAGTAACT	58.540	39.130	0.00	0.00	0.00	2.24
248	249	4.829064	TCAAACCATGTGCAGAAGTAAC	57.171	40.909	0.00	0.00	0.00	2.50
358	426	1.446272	GAGGGAGTTCGACCAAGCG	60.446	63.158	0.00	0.00	0.00	4.68
546	614	3.183775	CCGCTTCACTATTATAACGTGCC	59.816	47.826	10.42	3.49	0.00	5.01
551	619	2.735134	CCCGCCGCTTCACTATTATAAC	59.265	50.000	0.00	0.00	0.00	1.89
552	620	2.868839	GCCCGCCGCTTCACTATTATAA	60.869	50.000	0.00	0.00	0.00	0.98
553	621	1.337447	GCCCGCCGCTTCACTATTATA	60.337	52.381	0.00	0.00	0.00	0.98
633	701	3.066190	CGCGACCTCCCTACCACA	61.066	66.667	0.00	0.00	0.00	4.17
742	811	3.515316	AAGGCTGTGACGTCACCCG	62.515	63.158	38.12	30.10	45.88	5.28
783	861	1.401905	CGAAATTCTAGGCCCAACAGC	59.598	52.381	0.00	0.00	0.00	4.40
811	889	3.010138	ACTCTGTTGGGCCTAATTTGCTA	59.990	43.478	4.25	0.00	0.00	3.49
814	892	3.420893	TCACTCTGTTGGGCCTAATTTG	58.579	45.455	4.25	0.00	0.00	2.32
817	895	1.561542	CCTCACTCTGTTGGGCCTAAT	59.438	52.381	4.25	0.00	0.00	1.73
818	896	0.984230	CCTCACTCTGTTGGGCCTAA	59.016	55.000	4.53	0.00	0.00	2.69
819	897	0.116342	TCCTCACTCTGTTGGGCCTA	59.884	55.000	4.53	0.00	0.00	3.93
820	898	0.768221	TTCCTCACTCTGTTGGGCCT	60.768	55.000	4.53	0.00	0.00	5.19
821	899	0.329596	ATTCCTCACTCTGTTGGGCC	59.670	55.000	0.00	0.00	0.00	5.80
822	900	2.501723	TCTATTCCTCACTCTGTTGGGC	59.498	50.000	0.00	0.00	0.00	5.36
823	901	3.429547	CGTCTATTCCTCACTCTGTTGGG	60.430	52.174	0.00	0.00	0.00	4.12
824	902	3.193691	ACGTCTATTCCTCACTCTGTTGG	59.806	47.826	0.00	0.00	0.00	3.77
825	903	4.442375	ACGTCTATTCCTCACTCTGTTG	57.558	45.455	0.00	0.00	0.00	3.33
826	904	4.641094	CCTACGTCTATTCCTCACTCTGTT	59.359	45.833	0.00	0.00	0.00	3.16
827	905	4.200874	CCTACGTCTATTCCTCACTCTGT	58.799	47.826	0.00	0.00	0.00	3.41
828	906	3.003897	GCCTACGTCTATTCCTCACTCTG	59.996	52.174	0.00	0.00	0.00	3.35
829	907	3.215975	GCCTACGTCTATTCCTCACTCT	58.784	50.000	0.00	0.00	0.00	3.24
830	908	2.293955	GGCCTACGTCTATTCCTCACTC	59.706	54.545	0.00	0.00	0.00	3.51
831	909	2.308690	GGCCTACGTCTATTCCTCACT	58.691	52.381	0.00	0.00	0.00	3.41
832	910	1.340568	GGGCCTACGTCTATTCCTCAC	59.659	57.143	0.84	0.00	0.00	3.51
833	911	1.700955	GGGCCTACGTCTATTCCTCA	58.299	55.000	0.84	0.00	0.00	3.86
834	912	0.597072	CGGGCCTACGTCTATTCCTC	59.403	60.000	0.84	0.00	0.00	3.71
840	936	3.142838	GCCACGGGCCTACGTCTA	61.143	66.667	0.84	0.00	46.75	2.59
920	1017	0.839946	CGAGTGGGAGATTGGGGATT	59.160	55.000	0.00	0.00	0.00	3.01
921	1018	1.700042	GCGAGTGGGAGATTGGGGAT	61.700	60.000	0.00	0.00	0.00	3.85
1242	1339	4.933064	GCGACCTGATCCGCGGAG	62.933	72.222	33.87	21.74	42.02	4.63
1491	1594	3.089284	GCCATAACCCAGCTTGTACTTT	58.911	45.455	0.00	0.00	0.00	2.66
1533	1636	2.513897	GACATGTACCAGGGCGCC	60.514	66.667	21.18	21.18	0.00	6.53
1596	1699	1.219393	CCTCTTCTCTCCGTTGCCC	59.781	63.158	0.00	0.00	0.00	5.36
1605	1708	1.388174	TCCCTCCACTCCTCTTCTCT	58.612	55.000	0.00	0.00	0.00	3.10
1816	1919	5.473162	TCCAAGGAATACACAGACAACAATG	59.527	40.000	0.00	0.00	0.00	2.82
1855	1958	2.086869	CAGAAACCCTTGCATCATCGT	58.913	47.619	0.00	0.00	0.00	3.73
1873	1976	6.301687	CAGATCCTGCAGATAAAATCACAG	57.698	41.667	17.39	0.00	34.42	3.66
1945	2048	9.760660	TTTGTGTCAATTCAAAATTTAAAACCG	57.239	25.926	0.00	0.00	31.86	4.44
2035	2138	6.738200	CAGTGCAATACATAAAAACAGAGTCG	59.262	38.462	0.00	0.00	0.00	4.18
2056	2171	3.996150	AATCCAACTTGTTGCTCAGTG	57.004	42.857	7.89	0.00	0.00	3.66
2123	2238	2.477863	GCGTTTCTGTTTGCACAAGTCT	60.478	45.455	0.00	0.00	30.36	3.24
2266	2391	4.076175	AGTAGGTGTGGTTCTAATCCCT	57.924	45.455	0.00	0.00	0.00	4.20
2308	2433	3.373565	GGAGTTTGGGCAAGGCGG	61.374	66.667	0.00	0.00	0.00	6.13
2355	2480	2.740826	GACGCGGCCTGTTTGCTA	60.741	61.111	12.47	0.00	0.00	3.49
2495	2792	4.246458	GCATCCTACACGTCTTCTTCTTT	58.754	43.478	0.00	0.00	0.00	2.52
2510	2807	4.662961	CATCGCCGGCGCATCCTA	62.663	66.667	42.78	26.04	39.59	2.94
2534	2832	1.819632	CTTGGGACATGGGCGCTAC	60.820	63.158	7.64	0.66	39.30	3.58
2661	2974	1.110518	GTCCCGGCTTCCCAAAACAA	61.111	55.000	0.00	0.00	0.00	2.83
2671	2984	1.228459	GAAACCCTTGTCCCGGCTT	60.228	57.895	0.00	0.00	0.00	4.35
2800	3116	2.692368	ATGGTCATCGGCTGGGGT	60.692	61.111	0.00	0.00	0.00	4.95
2816	3132	0.179100	CGACAATGGACTCTCCGCAT	60.179	55.000	0.00	0.00	40.17	4.73
2821	3137	3.181485	CCTTCCTACGACAATGGACTCTC	60.181	52.174	0.00	0.00	0.00	3.20
2830	3146	4.676196	GCGTATTTCTCCTTCCTACGACAA	60.676	45.833	4.76	0.00	37.87	3.18
2831	3147	3.181493	GCGTATTTCTCCTTCCTACGACA	60.181	47.826	4.76	0.00	37.87	4.35
2833	3149	3.285484	AGCGTATTTCTCCTTCCTACGA	58.715	45.455	4.76	0.00	37.87	3.43
2835	3151	4.650754	TGAGCGTATTTCTCCTTCCTAC	57.349	45.455	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.