Multiple sequence alignment - TraesCS1A01G175000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G175000 chr1A 100.000 5912 0 0 644 6555 312772250 312778161 0.000000e+00 10918
1 TraesCS1A01G175000 chr1A 100.000 299 0 0 1 299 312771607 312771905 2.670000e-153 553
2 TraesCS1A01G175000 chr1B 94.494 5703 177 45 644 6301 340375790 340370180 0.000000e+00 8665
3 TraesCS1A01G175000 chr1B 97.297 185 5 0 115 299 340376356 340376172 1.370000e-81 315
4 TraesCS1A01G175000 chr1D 94.441 5666 212 46 668 6307 234743150 234737562 0.000000e+00 8623
5 TraesCS1A01G175000 chr1D 90.847 295 11 3 1 295 234743693 234743415 1.330000e-101 381
6 TraesCS1A01G175000 chr7B 92.657 926 47 8 1692 2614 64038532 64039439 0.000000e+00 1314
7 TraesCS1A01G175000 chr7B 95.867 750 27 2 3315 4062 64039558 64040305 0.000000e+00 1210
8 TraesCS1A01G175000 chr7B 89.925 665 32 15 1002 1643 64037886 64038538 0.000000e+00 824
9 TraesCS1A01G175000 chr7B 88.980 245 23 2 6314 6555 120363208 120362965 3.840000e-77 300
10 TraesCS1A01G175000 chr7A 95.354 495 19 2 3570 4062 635498627 635498135 0.000000e+00 784
11 TraesCS1A01G175000 chr7A 90.688 247 19 2 6312 6555 492784266 492784511 6.340000e-85 326
12 TraesCS1A01G175000 chr2D 90.945 254 19 2 6305 6555 144319336 144319588 8.140000e-89 339
13 TraesCS1A01G175000 chr5A 91.770 243 16 3 6316 6555 564605797 564606038 1.050000e-87 335
14 TraesCS1A01G175000 chr7D 91.093 247 18 2 6312 6555 433732549 433732794 1.360000e-86 331
15 TraesCS1A01G175000 chr7D 89.344 244 22 2 6315 6555 58612358 58612600 2.970000e-78 303
16 TraesCS1A01G175000 chr2B 89.453 256 18 7 6305 6555 227289164 227289415 1.370000e-81 315
17 TraesCS1A01G175000 chr5D 89.286 252 21 4 6307 6555 100857437 100857189 1.770000e-80 311
18 TraesCS1A01G175000 chr4B 89.388 245 22 2 6314 6555 469189786 469189543 8.260000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G175000 chr1A 312771607 312778161 6554 False 5735.5 10918 100.000000 1 6555 2 chr1A.!!$F1 6554
1 TraesCS1A01G175000 chr1B 340370180 340376356 6176 True 4490.0 8665 95.895500 115 6301 2 chr1B.!!$R1 6186
2 TraesCS1A01G175000 chr1D 234737562 234743693 6131 True 4502.0 8623 92.644000 1 6307 2 chr1D.!!$R1 6306
3 TraesCS1A01G175000 chr7B 64037886 64040305 2419 False 1116.0 1314 92.816333 1002 4062 3 chr7B.!!$F1 3060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.174389 CCAGAGGGTCAGTGTGATCG 59.826 60.000 0.00 0.0 0.00 3.69 F
1919 2005 0.031178 GCTGTTTGCACTGAGGGTTG 59.969 55.000 0.00 0.0 42.31 3.77 F
3127 3227 0.034670 AGCTGGGCCATGAGAAGAAC 60.035 55.000 6.72 0.0 0.00 3.01 F
3932 4032 1.003003 AGAAGAGCCAGTTGGAAGAGC 59.997 52.381 1.45 0.0 37.39 4.09 F
4310 4412 0.035630 GCTCAAGGACCAGATGCAGT 60.036 55.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2139 0.034896 TCCGTGGAGAAGACTTTGCC 59.965 55.0 0.00 0.00 0.00 4.52 R
3908 4008 0.035881 TCCAACTGGCTCTTCTGCAG 59.964 55.0 7.63 7.63 34.44 4.41 R
4042 4144 1.123861 TGCTCTTGAGCTCCACCACT 61.124 55.0 21.17 0.00 35.49 4.00 R
5150 5255 0.026803 GCTTCGAATTAGCGTGCTGG 59.973 55.0 4.25 0.00 0.00 4.85 R
6002 6113 0.032678 CGATAGGCTGCGAGTCCAAT 59.967 55.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.372499 GCTCACACGTCCACGCTTA 60.372 57.895 0.00 0.00 44.43 3.09
47 48 1.795872 CACGTCCACGCTTATTTCACA 59.204 47.619 0.00 0.00 44.43 3.58
48 49 2.066262 ACGTCCACGCTTATTTCACAG 58.934 47.619 0.00 0.00 44.43 3.66
49 50 2.288579 ACGTCCACGCTTATTTCACAGA 60.289 45.455 0.00 0.00 44.43 3.41
52 53 2.742053 TCCACGCTTATTTCACAGAAGC 59.258 45.455 0.00 0.00 41.75 3.86
55 56 3.433274 CACGCTTATTTCACAGAAGCAGA 59.567 43.478 6.65 0.00 44.71 4.26
89 90 4.954118 TCGGCAGGTCCACCCAGT 62.954 66.667 0.00 0.00 36.42 4.00
90 91 4.704833 CGGCAGGTCCACCCAGTG 62.705 72.222 0.00 0.00 36.42 3.66
91 92 3.249189 GGCAGGTCCACCCAGTGA 61.249 66.667 0.00 0.00 35.23 3.41
92 93 2.032681 GCAGGTCCACCCAGTGAC 59.967 66.667 0.00 0.00 35.23 3.67
93 94 2.818169 GCAGGTCCACCCAGTGACA 61.818 63.158 0.00 0.00 35.23 3.58
94 95 1.071471 CAGGTCCACCCAGTGACAC 59.929 63.158 0.00 0.00 35.23 3.67
95 96 1.383943 AGGTCCACCCAGTGACACA 60.384 57.895 8.59 0.00 35.23 3.72
96 97 1.071471 GGTCCACCCAGTGACACAG 59.929 63.158 8.59 0.00 35.23 3.66
97 98 1.598130 GTCCACCCAGTGACACAGC 60.598 63.158 8.59 0.00 35.23 4.40
98 99 2.281761 CCACCCAGTGACACAGCC 60.282 66.667 8.59 0.00 35.23 4.85
127 128 0.174389 CCAGAGGGTCAGTGTGATCG 59.826 60.000 0.00 0.00 0.00 3.69
237 243 7.600375 TCGCTCTAGCTAAATAAATCTCCATTG 59.400 37.037 0.00 0.00 39.32 2.82
696 739 3.752339 CCGGCCTTCTTGCTTGCC 61.752 66.667 0.00 0.00 40.54 4.52
700 743 2.564975 CCTTCTTGCTTGCCTGCG 59.435 61.111 0.00 0.00 35.36 5.18
1115 1175 0.175531 GCTCTGGAGGAAGCAGAGTC 59.824 60.000 2.26 0.00 43.07 3.36
1719 1805 2.606213 TGACCATCCAGCGGGTGA 60.606 61.111 9.09 0.00 37.57 4.02
1812 1898 1.939974 TTAGACACATCCGCTGCATC 58.060 50.000 0.00 0.00 0.00 3.91
1841 1927 5.843673 TGAGCTTTAAGAGATCATCTCGT 57.156 39.130 9.11 8.67 45.34 4.18
1842 1928 5.826586 TGAGCTTTAAGAGATCATCTCGTC 58.173 41.667 6.35 0.00 45.34 4.20
1843 1929 5.592282 TGAGCTTTAAGAGATCATCTCGTCT 59.408 40.000 6.35 0.00 45.34 4.18
1844 1930 6.238621 TGAGCTTTAAGAGATCATCTCGTCTC 60.239 42.308 6.35 7.97 45.34 3.36
1881 1967 7.667219 ACATCAACCAGATTCACTTAGACATTT 59.333 33.333 0.00 0.00 33.72 2.32
1909 1995 0.249531 CTGCATTGTGGCTGTTTGCA 60.250 50.000 0.00 0.00 45.15 4.08
1912 1998 1.493772 CATTGTGGCTGTTTGCACTG 58.506 50.000 0.00 0.00 45.15 3.66
1915 2001 1.102809 TGTGGCTGTTTGCACTGAGG 61.103 55.000 0.00 0.00 45.15 3.86
1917 2003 1.529244 GGCTGTTTGCACTGAGGGT 60.529 57.895 0.00 0.00 45.15 4.34
1918 2004 1.109323 GGCTGTTTGCACTGAGGGTT 61.109 55.000 0.00 0.00 45.15 4.11
1919 2005 0.031178 GCTGTTTGCACTGAGGGTTG 59.969 55.000 0.00 0.00 42.31 3.77
1921 2007 1.066002 CTGTTTGCACTGAGGGTTGTG 59.934 52.381 0.00 0.00 37.26 3.33
1958 2048 1.210155 GCATTTCGGTGTGTGCCTC 59.790 57.895 0.00 0.00 0.00 4.70
1985 2075 3.391965 TGGTGCATTTGCTTTGATTCAC 58.608 40.909 3.94 0.00 42.66 3.18
1991 2081 2.031037 TTGCTTTGATTCACGCGTTC 57.969 45.000 10.22 5.57 0.00 3.95
1995 2085 3.187432 TGCTTTGATTCACGCGTTCATTA 59.813 39.130 10.22 0.00 0.00 1.90
2026 2116 2.758736 ACTGATTCTTGCTCTTCGCT 57.241 45.000 0.00 0.00 40.11 4.93
2049 2139 2.050351 AGTGAGAACGGCGACACG 60.050 61.111 16.62 0.00 38.15 4.49
2061 2151 1.222115 GCGACACGGCAAAGTCTTCT 61.222 55.000 0.00 0.00 32.68 2.85
2064 2154 0.468226 ACACGGCAAAGTCTTCTCCA 59.532 50.000 0.00 0.00 0.00 3.86
2317 2407 4.643334 AGAAAAAGGGAAGCTACGTTTGTT 59.357 37.500 0.00 6.67 0.00 2.83
2319 2409 3.982576 AAGGGAAGCTACGTTTGTTTG 57.017 42.857 0.00 0.00 0.00 2.93
2332 2423 5.901552 ACGTTTGTTTGGTTGATCATTTCT 58.098 33.333 0.00 0.00 0.00 2.52
2337 2429 3.824001 TTGGTTGATCATTTCTGGGGA 57.176 42.857 0.00 0.00 0.00 4.81
2561 2653 1.676635 GCATCTGTTGAGCCAGCCA 60.677 57.895 0.00 0.00 32.32 4.75
2650 2750 0.467290 TCACTCCCAAAACCAGTGCC 60.467 55.000 0.00 0.00 37.95 5.01
2713 2813 0.600782 CGCCTTTTGCCAACAATGCT 60.601 50.000 0.00 0.00 35.21 3.79
2728 2828 0.460311 ATGCTACCTCGAGAAACCCG 59.540 55.000 15.71 0.00 0.00 5.28
2867 2967 4.810191 AGTGAGATAGGGACTTTGACAC 57.190 45.455 0.00 0.00 41.75 3.67
2869 2969 3.056749 GTGAGATAGGGACTTTGACACGT 60.057 47.826 0.00 0.00 41.75 4.49
2920 3020 4.974275 CAGACACTCAGAAAGCAAATTGTG 59.026 41.667 0.00 0.00 0.00 3.33
2929 3029 5.401674 CAGAAAGCAAATTGTGAAAGAGAGC 59.598 40.000 0.00 0.00 0.00 4.09
3127 3227 0.034670 AGCTGGGCCATGAGAAGAAC 60.035 55.000 6.72 0.00 0.00 3.01
3133 3233 4.079253 TGGGCCATGAGAAGAACTTAAAC 58.921 43.478 0.00 0.00 0.00 2.01
3169 3269 3.754965 ACAGCTACAGAAAATGCAGGAA 58.245 40.909 0.00 0.00 0.00 3.36
3205 3305 2.903798 CTTCTGGCTGTGAAGGATCTC 58.096 52.381 0.00 0.00 37.75 2.75
3281 3381 2.367512 AGGATCCCCAGGAGGCAC 60.368 66.667 8.55 0.00 34.05 5.01
3361 3461 3.305398 ACAAGCTCGTACCAAGAGAAG 57.695 47.619 0.93 0.00 37.93 2.85
3364 3464 2.096248 AGCTCGTACCAAGAGAAGGAG 58.904 52.381 0.93 0.00 37.93 3.69
3410 3510 1.618343 TGAAGAAGAGTGACGGCATCA 59.382 47.619 0.00 0.00 33.79 3.07
3418 3518 3.713936 TGACGGCATCACTAGTTCG 57.286 52.632 0.00 0.00 29.99 3.95
3562 3662 2.158986 CCATGACATCTCTTCGAGGCTT 60.159 50.000 0.00 0.00 0.00 4.35
3846 3946 9.868277 CAAGAGTCTATCTTCACAAGTATCTTT 57.132 33.333 0.00 0.00 45.50 2.52
3895 3995 1.339291 GTGCAAGCAAGAAAAGAGGCT 59.661 47.619 0.00 0.00 38.45 4.58
3932 4032 1.003003 AGAAGAGCCAGTTGGAAGAGC 59.997 52.381 1.45 0.00 37.39 4.09
4042 4144 8.712228 TCAAGTCAAATGAGATAGATAGGCTA 57.288 34.615 0.00 0.00 0.00 3.93
4096 4198 3.253677 TCGAGAACCAGAAGAGAAGTGAC 59.746 47.826 0.00 0.00 0.00 3.67
4164 4266 3.243002 GCCAAGATTGACAAGCTATCAGC 60.243 47.826 6.35 4.03 42.84 4.26
4177 4279 4.589216 GCTATCAGCTGAGAGAGACAAT 57.411 45.455 36.22 13.59 38.45 2.71
4216 4318 2.733227 GCAGAAAGACATGGAATTGGCG 60.733 50.000 0.00 0.00 0.00 5.69
4303 4405 1.201647 CTTGCATTGCTCAAGGACCAG 59.798 52.381 10.49 0.00 37.77 4.00
4310 4412 0.035630 GCTCAAGGACCAGATGCAGT 60.036 55.000 0.00 0.00 0.00 4.40
4328 4430 4.202295 TGCAGTCATATTTGGAGGAGCTAG 60.202 45.833 0.00 0.00 0.00 3.42
4540 4642 5.163854 GGAAAATGGTGTCACTTCAGATACG 60.164 44.000 2.35 0.00 31.24 3.06
4577 4679 8.609176 TCGAAAACCAGATATATTTGTAGCAAC 58.391 33.333 2.84 0.00 0.00 4.17
4651 4753 5.866633 GCTAGCTTTCTCTCATATGCGTAAT 59.133 40.000 7.70 0.00 0.00 1.89
4653 4755 7.704472 GCTAGCTTTCTCTCATATGCGTAATAT 59.296 37.037 7.70 0.00 31.14 1.28
4654 4756 7.824704 AGCTTTCTCTCATATGCGTAATATG 57.175 36.000 11.76 11.76 46.64 1.78
4655 4757 6.312426 AGCTTTCTCTCATATGCGTAATATGC 59.688 38.462 12.70 0.00 45.41 3.14
4656 4758 6.632171 TTTCTCTCATATGCGTAATATGCG 57.368 37.500 12.70 8.72 45.41 4.73
4657 4759 5.310720 TCTCTCATATGCGTAATATGCGT 57.689 39.130 12.70 4.48 45.41 5.24
4658 4760 6.431198 TCTCTCATATGCGTAATATGCGTA 57.569 37.500 8.64 8.64 45.41 4.42
4659 4761 6.848451 TCTCTCATATGCGTAATATGCGTAA 58.152 36.000 10.09 0.00 45.41 3.18
4660 4762 6.745907 TCTCTCATATGCGTAATATGCGTAAC 59.254 38.462 10.09 0.00 45.41 2.50
4661 4763 5.510323 TCTCATATGCGTAATATGCGTAACG 59.490 40.000 10.09 5.92 45.41 3.18
4720 4822 3.603158 ACTTTCCACAAACAACCAACC 57.397 42.857 0.00 0.00 0.00 3.77
4721 4823 2.900546 ACTTTCCACAAACAACCAACCA 59.099 40.909 0.00 0.00 0.00 3.67
4722 4824 3.325135 ACTTTCCACAAACAACCAACCAA 59.675 39.130 0.00 0.00 0.00 3.67
4723 4825 3.320673 TTCCACAAACAACCAACCAAC 57.679 42.857 0.00 0.00 0.00 3.77
4812 4914 7.093965 AGGTGTACCTTCCCTTTTGTATTTA 57.906 36.000 0.00 0.00 46.09 1.40
4838 4940 1.873863 CATGCTGGACAGTGCACAG 59.126 57.895 21.04 14.44 42.26 3.66
4844 4948 2.613977 GCTGGACAGTGCACAGTCTTAT 60.614 50.000 32.84 5.72 33.55 1.73
4873 4977 1.470890 AGTTTGTGGGTTGTCAACACG 59.529 47.619 17.29 0.00 37.72 4.49
4917 5022 8.062448 GTGTAGAGATTTTCCATTATTACGTGC 58.938 37.037 0.00 0.00 0.00 5.34
5112 5217 3.719268 ATCATACACTTTGGTGCCTCA 57.281 42.857 0.00 0.00 46.57 3.86
5148 5253 6.777091 ACCATGTTATGCTTTGCAGGATAATA 59.223 34.615 3.75 2.19 43.12 0.98
5149 5254 7.287466 ACCATGTTATGCTTTGCAGGATAATAA 59.713 33.333 3.75 0.00 43.12 1.40
5150 5255 7.596248 CCATGTTATGCTTTGCAGGATAATAAC 59.404 37.037 3.75 8.17 43.12 1.89
5157 5262 2.560504 TGCAGGATAATAACCAGCACG 58.439 47.619 2.67 0.00 43.07 5.34
5263 5368 4.201980 CCACGACACGAGGTTATCATCTTA 60.202 45.833 0.00 0.00 33.22 2.10
5278 5383 9.953825 GTTATCATCTTAAATTAGATTACCGCG 57.046 33.333 0.00 0.00 32.60 6.46
5301 5406 5.805994 CGATCGGTCTTCTTAGCTTTAACTT 59.194 40.000 7.38 0.00 0.00 2.66
5302 5407 6.310711 CGATCGGTCTTCTTAGCTTTAACTTT 59.689 38.462 7.38 0.00 0.00 2.66
5303 5408 7.148623 CGATCGGTCTTCTTAGCTTTAACTTTT 60.149 37.037 7.38 0.00 0.00 2.27
5304 5409 9.148104 GATCGGTCTTCTTAGCTTTAACTTTTA 57.852 33.333 0.00 0.00 0.00 1.52
5305 5410 8.891671 TCGGTCTTCTTAGCTTTAACTTTTAA 57.108 30.769 0.00 0.00 0.00 1.52
5306 5411 8.768019 TCGGTCTTCTTAGCTTTAACTTTTAAC 58.232 33.333 0.00 0.00 0.00 2.01
5307 5412 8.771766 CGGTCTTCTTAGCTTTAACTTTTAACT 58.228 33.333 0.00 0.00 0.00 2.24
5310 5415 9.841295 TCTTCTTAGCTTTAACTTTTAACTCCA 57.159 29.630 0.00 0.00 0.00 3.86
5312 5417 9.623000 TTCTTAGCTTTAACTTTTAACTCCAGT 57.377 29.630 0.00 0.00 0.00 4.00
5313 5418 9.623000 TCTTAGCTTTAACTTTTAACTCCAGTT 57.377 29.630 0.00 0.00 41.73 3.16
5331 5436 4.081420 CCAGTTATACAGGAGCAGAAGTGT 60.081 45.833 0.00 0.00 0.00 3.55
5352 5457 3.124297 GTCTGACATACTTTGCTGCTGTC 59.876 47.826 2.24 9.67 37.36 3.51
5408 5513 2.043115 TCCTCAAAGGAGCTGGAGTCTA 59.957 50.000 0.00 0.00 40.06 2.59
5412 5517 3.703556 TCAAAGGAGCTGGAGTCTATGAG 59.296 47.826 0.00 0.00 0.00 2.90
5500 5605 4.388499 TTCGCGGAGGTGGAAGGC 62.388 66.667 6.13 0.00 0.00 4.35
5699 5806 4.103627 AGTTGTATGGAGCATCATCATCCA 59.896 41.667 0.00 0.00 46.69 3.41
5703 5810 1.697982 TGGAGCATCATCATCCAGAGG 59.302 52.381 0.00 0.00 38.19 3.69
5723 5830 3.873679 TTGCAGAGGCCAGGCAAGG 62.874 63.158 20.49 0.05 42.12 3.61
5797 5904 5.013547 CACTCCCCCACACAATAATGTTTA 58.986 41.667 0.00 0.00 37.82 2.01
5858 5969 3.133901 TGTCAGTTGTTGTGCCTCTAGAA 59.866 43.478 0.00 0.00 0.00 2.10
5865 5976 0.532573 TGTGCCTCTAGAAAGAGCCG 59.467 55.000 0.00 0.00 46.84 5.52
5880 5991 3.014036 CCGAGTGTGTGTGTGTGC 58.986 61.111 0.00 0.00 0.00 4.57
5883 5994 1.348250 GAGTGTGTGTGTGTGCGTG 59.652 57.895 0.00 0.00 0.00 5.34
5889 6000 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
5890 6001 2.394563 TGTGTGTGCGTGTGTGTGG 61.395 57.895 0.00 0.00 0.00 4.17
5891 6002 2.046796 TGTGTGCGTGTGTGTGGT 60.047 55.556 0.00 0.00 0.00 4.16
5892 6003 2.394563 TGTGTGCGTGTGTGTGGTG 61.395 57.895 0.00 0.00 0.00 4.17
5893 6004 2.046796 TGTGCGTGTGTGTGGTGT 60.047 55.556 0.00 0.00 0.00 4.16
5908 6019 6.092259 GTGTGTGGTGTTGTATAATTCTCCTC 59.908 42.308 0.00 0.00 0.00 3.71
5949 6060 9.277783 TGGAAGAAAGAAAAGTGAGAGATAAAG 57.722 33.333 0.00 0.00 0.00 1.85
5964 6075 6.657875 AGAGATAAAGGAAATGAAGGGACAG 58.342 40.000 0.00 0.00 0.00 3.51
6002 6113 4.891627 TGAAGCAACTGACGATTTGAAA 57.108 36.364 0.00 0.00 0.00 2.69
6190 6311 2.695147 CTGCTTCCTTGTTTTCCTTGGT 59.305 45.455 0.00 0.00 0.00 3.67
6211 6332 4.199804 CCCTATCTCCGTCCAGGG 57.800 66.667 0.00 0.00 41.83 4.45
6212 6333 1.233369 CCCTATCTCCGTCCAGGGT 59.767 63.158 0.00 0.00 42.50 4.34
6303 6428 0.890683 CATCCCAGGTGCCAGTTTTC 59.109 55.000 0.00 0.00 0.00 2.29
6306 6431 1.063266 TCCCAGGTGCCAGTTTTCTTT 60.063 47.619 0.00 0.00 0.00 2.52
6307 6432 1.762370 CCCAGGTGCCAGTTTTCTTTT 59.238 47.619 0.00 0.00 0.00 2.27
6308 6433 2.170397 CCCAGGTGCCAGTTTTCTTTTT 59.830 45.455 0.00 0.00 0.00 1.94
6361 6486 9.466497 TTGCCATTTCATTAATTAAGAGAGAGT 57.534 29.630 3.94 0.00 0.00 3.24
6362 6487 9.466497 TGCCATTTCATTAATTAAGAGAGAGTT 57.534 29.630 3.94 0.00 0.00 3.01
6363 6488 9.727627 GCCATTTCATTAATTAAGAGAGAGTTG 57.272 33.333 3.94 0.00 0.00 3.16
6380 6505 5.419760 GAGTTGTAAAGTCCAAGGACAAC 57.580 43.478 20.52 15.16 46.52 3.32
6382 6507 5.570234 GTTGTAAAGTCCAAGGACAACAA 57.430 39.130 20.52 20.81 45.82 2.83
6383 6508 6.144078 GTTGTAAAGTCCAAGGACAACAAT 57.856 37.500 24.55 10.65 45.82 2.71
6384 6509 6.206498 GTTGTAAAGTCCAAGGACAACAATC 58.794 40.000 24.55 18.16 45.82 2.67
6385 6510 5.441500 TGTAAAGTCCAAGGACAACAATCA 58.558 37.500 20.52 9.18 46.76 2.57
6386 6511 6.068010 TGTAAAGTCCAAGGACAACAATCAT 58.932 36.000 20.52 0.00 46.76 2.45
6387 6512 7.227873 TGTAAAGTCCAAGGACAACAATCATA 58.772 34.615 20.52 0.53 46.76 2.15
6388 6513 6.575162 AAAGTCCAAGGACAACAATCATAC 57.425 37.500 20.52 0.00 46.76 2.39
6389 6514 5.241403 AGTCCAAGGACAACAATCATACA 57.759 39.130 20.52 0.00 46.76 2.29
6390 6515 5.630121 AGTCCAAGGACAACAATCATACAA 58.370 37.500 20.52 0.00 46.76 2.41
6391 6516 6.248433 AGTCCAAGGACAACAATCATACAAT 58.752 36.000 20.52 0.00 46.76 2.71
6392 6517 6.151648 AGTCCAAGGACAACAATCATACAATG 59.848 38.462 20.52 0.00 46.76 2.82
6393 6518 5.418524 TCCAAGGACAACAATCATACAATGG 59.581 40.000 0.00 0.00 0.00 3.16
6394 6519 4.989279 AGGACAACAATCATACAATGGC 57.011 40.909 0.00 0.00 0.00 4.40
6395 6520 3.701040 AGGACAACAATCATACAATGGCC 59.299 43.478 0.00 0.00 36.16 5.36
6396 6521 3.446873 GGACAACAATCATACAATGGCCA 59.553 43.478 8.56 8.56 35.97 5.36
6397 6522 4.081752 GGACAACAATCATACAATGGCCAA 60.082 41.667 10.96 0.00 35.97 4.52
6398 6523 5.075858 ACAACAATCATACAATGGCCAAG 57.924 39.130 10.96 8.53 0.00 3.61
6399 6524 4.771577 ACAACAATCATACAATGGCCAAGA 59.228 37.500 10.96 1.29 0.00 3.02
6400 6525 5.422970 ACAACAATCATACAATGGCCAAGAT 59.577 36.000 10.96 3.89 0.00 2.40
6401 6526 6.606796 ACAACAATCATACAATGGCCAAGATA 59.393 34.615 10.96 2.01 0.00 1.98
6402 6527 7.123997 ACAACAATCATACAATGGCCAAGATAA 59.876 33.333 10.96 0.00 0.00 1.75
6403 6528 7.658525 ACAATCATACAATGGCCAAGATAAA 57.341 32.000 10.96 0.00 0.00 1.40
6404 6529 7.719483 ACAATCATACAATGGCCAAGATAAAG 58.281 34.615 10.96 0.00 0.00 1.85
6405 6530 5.772825 TCATACAATGGCCAAGATAAAGC 57.227 39.130 10.96 0.00 0.00 3.51
6406 6531 5.199723 TCATACAATGGCCAAGATAAAGCA 58.800 37.500 10.96 0.00 0.00 3.91
6407 6532 5.655974 TCATACAATGGCCAAGATAAAGCAA 59.344 36.000 10.96 0.00 0.00 3.91
6408 6533 4.192429 ACAATGGCCAAGATAAAGCAAC 57.808 40.909 10.96 0.00 0.00 4.17
6409 6534 3.834231 ACAATGGCCAAGATAAAGCAACT 59.166 39.130 10.96 0.00 0.00 3.16
6410 6535 5.016173 ACAATGGCCAAGATAAAGCAACTA 58.984 37.500 10.96 0.00 0.00 2.24
6411 6536 5.105756 ACAATGGCCAAGATAAAGCAACTAC 60.106 40.000 10.96 0.00 0.00 2.73
6412 6537 4.301072 TGGCCAAGATAAAGCAACTACT 57.699 40.909 0.61 0.00 0.00 2.57
6413 6538 4.261801 TGGCCAAGATAAAGCAACTACTC 58.738 43.478 0.61 0.00 0.00 2.59
6414 6539 4.261801 GGCCAAGATAAAGCAACTACTCA 58.738 43.478 0.00 0.00 0.00 3.41
6415 6540 4.095036 GGCCAAGATAAAGCAACTACTCAC 59.905 45.833 0.00 0.00 0.00 3.51
6416 6541 4.201724 GCCAAGATAAAGCAACTACTCACG 60.202 45.833 0.00 0.00 0.00 4.35
6417 6542 4.330074 CCAAGATAAAGCAACTACTCACGG 59.670 45.833 0.00 0.00 0.00 4.94
6418 6543 4.803098 AGATAAAGCAACTACTCACGGT 57.197 40.909 0.00 0.00 0.00 4.83
6419 6544 4.495422 AGATAAAGCAACTACTCACGGTG 58.505 43.478 0.56 0.56 0.00 4.94
6420 6545 2.614829 AAAGCAACTACTCACGGTGT 57.385 45.000 8.17 0.00 0.00 4.16
6421 6546 3.738830 AAAGCAACTACTCACGGTGTA 57.261 42.857 8.17 0.00 0.00 2.90
6422 6547 3.738830 AAGCAACTACTCACGGTGTAA 57.261 42.857 8.17 0.00 0.00 2.41
6423 6548 3.738830 AGCAACTACTCACGGTGTAAA 57.261 42.857 8.17 0.00 0.00 2.01
6424 6549 4.062677 AGCAACTACTCACGGTGTAAAA 57.937 40.909 8.17 0.00 0.00 1.52
6425 6550 4.638304 AGCAACTACTCACGGTGTAAAAT 58.362 39.130 8.17 0.00 0.00 1.82
6426 6551 5.061179 AGCAACTACTCACGGTGTAAAATT 58.939 37.500 8.17 0.00 0.00 1.82
6427 6552 6.225318 AGCAACTACTCACGGTGTAAAATTA 58.775 36.000 8.17 0.00 0.00 1.40
6428 6553 6.146673 AGCAACTACTCACGGTGTAAAATTAC 59.853 38.462 8.17 0.00 0.00 1.89
6429 6554 6.073657 GCAACTACTCACGGTGTAAAATTACA 60.074 38.462 8.17 1.96 41.06 2.41
6430 6555 7.360607 GCAACTACTCACGGTGTAAAATTACAT 60.361 37.037 8.17 0.00 44.59 2.29
6431 6556 7.823149 ACTACTCACGGTGTAAAATTACATC 57.177 36.000 8.17 7.75 44.59 3.06
6432 6557 7.380536 ACTACTCACGGTGTAAAATTACATCA 58.619 34.615 14.91 0.00 43.31 3.07
6433 6558 7.874016 ACTACTCACGGTGTAAAATTACATCAA 59.126 33.333 14.91 1.78 43.31 2.57
6434 6559 7.129109 ACTCACGGTGTAAAATTACATCAAG 57.871 36.000 14.91 11.15 43.31 3.02
6435 6560 5.933790 TCACGGTGTAAAATTACATCAAGC 58.066 37.500 14.91 1.19 43.31 4.01
6436 6561 5.703592 TCACGGTGTAAAATTACATCAAGCT 59.296 36.000 14.91 0.00 43.31 3.74
6437 6562 6.021596 CACGGTGTAAAATTACATCAAGCTC 58.978 40.000 14.91 0.00 43.31 4.09
6438 6563 5.938125 ACGGTGTAAAATTACATCAAGCTCT 59.062 36.000 14.91 0.00 43.31 4.09
6439 6564 7.064134 CACGGTGTAAAATTACATCAAGCTCTA 59.936 37.037 14.91 0.00 43.31 2.43
6440 6565 7.769044 ACGGTGTAAAATTACATCAAGCTCTAT 59.231 33.333 14.91 0.00 43.31 1.98
6441 6566 8.064222 CGGTGTAAAATTACATCAAGCTCTATG 58.936 37.037 14.91 6.69 43.31 2.23
6442 6567 9.109393 GGTGTAAAATTACATCAAGCTCTATGA 57.891 33.333 13.59 2.31 44.59 2.15
6443 6568 9.922305 GTGTAAAATTACATCAAGCTCTATGAC 57.078 33.333 13.59 2.50 44.59 3.06
6444 6569 9.665719 TGTAAAATTACATCAAGCTCTATGACA 57.334 29.630 13.59 4.60 38.64 3.58
6445 6570 9.922305 GTAAAATTACATCAAGCTCTATGACAC 57.078 33.333 13.59 0.39 33.88 3.67
6446 6571 7.559590 AAATTACATCAAGCTCTATGACACC 57.440 36.000 13.59 0.00 0.00 4.16
6447 6572 3.550437 ACATCAAGCTCTATGACACCC 57.450 47.619 13.59 0.00 0.00 4.61
6448 6573 2.159043 ACATCAAGCTCTATGACACCCG 60.159 50.000 13.59 0.00 0.00 5.28
6449 6574 0.175760 TCAAGCTCTATGACACCCGC 59.824 55.000 0.00 0.00 0.00 6.13
6450 6575 0.811616 CAAGCTCTATGACACCCGCC 60.812 60.000 0.00 0.00 0.00 6.13
6451 6576 1.264749 AAGCTCTATGACACCCGCCA 61.265 55.000 0.00 0.00 0.00 5.69
6452 6577 1.220749 GCTCTATGACACCCGCCAA 59.779 57.895 0.00 0.00 0.00 4.52
6453 6578 0.392461 GCTCTATGACACCCGCCAAA 60.392 55.000 0.00 0.00 0.00 3.28
6454 6579 1.656652 CTCTATGACACCCGCCAAAG 58.343 55.000 0.00 0.00 0.00 2.77
6455 6580 0.392461 TCTATGACACCCGCCAAAGC 60.392 55.000 0.00 0.00 0.00 3.51
6456 6581 1.376609 CTATGACACCCGCCAAAGCC 61.377 60.000 0.00 0.00 34.57 4.35
6457 6582 2.830186 TATGACACCCGCCAAAGCCC 62.830 60.000 0.00 0.00 34.57 5.19
6458 6583 4.966787 GACACCCGCCAAAGCCCA 62.967 66.667 0.00 0.00 34.57 5.36
6461 6586 4.974721 ACCCGCCAAAGCCCACAG 62.975 66.667 0.00 0.00 34.57 3.66
6473 6598 4.864334 CCACAGGGCCGCCTCATC 62.864 72.222 9.86 0.00 0.00 2.92
6474 6599 4.864334 CACAGGGCCGCCTCATCC 62.864 72.222 9.86 0.00 0.00 3.51
6476 6601 3.882326 CAGGGCCGCCTCATCCAT 61.882 66.667 9.86 0.00 0.00 3.41
6477 6602 2.122413 AGGGCCGCCTCATCCATA 60.122 61.111 9.86 0.00 0.00 2.74
6478 6603 1.770110 AGGGCCGCCTCATCCATAA 60.770 57.895 9.86 0.00 0.00 1.90
6479 6604 1.136329 AGGGCCGCCTCATCCATAAT 61.136 55.000 9.86 0.00 0.00 1.28
6480 6605 0.251341 GGGCCGCCTCATCCATAATT 60.251 55.000 9.86 0.00 0.00 1.40
6481 6606 1.620822 GGCCGCCTCATCCATAATTT 58.379 50.000 0.71 0.00 0.00 1.82
6482 6607 1.963515 GGCCGCCTCATCCATAATTTT 59.036 47.619 0.71 0.00 0.00 1.82
6483 6608 2.365293 GGCCGCCTCATCCATAATTTTT 59.635 45.455 0.71 0.00 0.00 1.94
6504 6629 6.875948 TTTTTCCACGAGAATCATCAAAGA 57.124 33.333 0.00 0.00 33.44 2.52
6505 6630 5.862924 TTTCCACGAGAATCATCAAAGAC 57.137 39.130 0.00 0.00 33.44 3.01
6506 6631 3.511699 TCCACGAGAATCATCAAAGACG 58.488 45.455 0.00 0.00 33.17 4.18
6507 6632 2.029728 CCACGAGAATCATCAAAGACGC 59.970 50.000 0.00 0.00 33.17 5.19
6508 6633 1.920574 ACGAGAATCATCAAAGACGCG 59.079 47.619 3.53 3.53 33.17 6.01
6509 6634 1.256376 CGAGAATCATCAAAGACGCGG 59.744 52.381 12.47 0.00 33.17 6.46
6510 6635 2.540515 GAGAATCATCAAAGACGCGGA 58.459 47.619 12.47 0.00 33.17 5.54
6511 6636 2.930040 GAGAATCATCAAAGACGCGGAA 59.070 45.455 12.47 0.00 33.17 4.30
6512 6637 3.334691 AGAATCATCAAAGACGCGGAAA 58.665 40.909 12.47 0.00 0.00 3.13
6513 6638 3.125316 AGAATCATCAAAGACGCGGAAAC 59.875 43.478 12.47 0.00 0.00 2.78
6527 6652 1.366679 GGAAACGTTCCGGAAGATCC 58.633 55.000 19.50 17.92 40.59 3.36
6528 6653 1.066358 GGAAACGTTCCGGAAGATCCT 60.066 52.381 19.50 0.78 40.59 3.24
6529 6654 2.167075 GGAAACGTTCCGGAAGATCCTA 59.833 50.000 19.50 0.00 40.59 2.94
6530 6655 3.445857 GAAACGTTCCGGAAGATCCTAG 58.554 50.000 19.50 5.81 33.30 3.02
6531 6656 0.745468 ACGTTCCGGAAGATCCTAGC 59.255 55.000 19.50 1.70 33.30 3.42
6532 6657 0.744874 CGTTCCGGAAGATCCTAGCA 59.255 55.000 19.50 0.00 33.30 3.49
6533 6658 1.341531 CGTTCCGGAAGATCCTAGCAT 59.658 52.381 19.50 0.00 33.30 3.79
6534 6659 2.224066 CGTTCCGGAAGATCCTAGCATT 60.224 50.000 19.50 0.00 33.30 3.56
6535 6660 3.741388 CGTTCCGGAAGATCCTAGCATTT 60.741 47.826 19.50 0.00 33.30 2.32
6536 6661 3.753294 TCCGGAAGATCCTAGCATTTC 57.247 47.619 0.00 0.00 33.30 2.17
6537 6662 3.309296 TCCGGAAGATCCTAGCATTTCT 58.691 45.455 0.00 0.00 33.30 2.52
6538 6663 3.322254 TCCGGAAGATCCTAGCATTTCTC 59.678 47.826 0.00 0.00 33.30 2.87
6539 6664 3.323403 CCGGAAGATCCTAGCATTTCTCT 59.677 47.826 0.00 0.00 33.30 3.10
6540 6665 4.555262 CGGAAGATCCTAGCATTTCTCTC 58.445 47.826 0.00 0.00 33.30 3.20
6541 6666 4.560513 CGGAAGATCCTAGCATTTCTCTCC 60.561 50.000 0.00 0.00 33.30 3.71
6542 6667 4.592778 GGAAGATCCTAGCATTTCTCTCCT 59.407 45.833 0.00 0.00 32.53 3.69
6543 6668 5.071653 GGAAGATCCTAGCATTTCTCTCCTT 59.928 44.000 0.00 0.00 32.53 3.36
6544 6669 5.806654 AGATCCTAGCATTTCTCTCCTTC 57.193 43.478 0.00 0.00 0.00 3.46
6545 6670 4.592778 AGATCCTAGCATTTCTCTCCTTCC 59.407 45.833 0.00 0.00 0.00 3.46
6546 6671 3.724478 TCCTAGCATTTCTCTCCTTCCA 58.276 45.455 0.00 0.00 0.00 3.53
6547 6672 4.104086 TCCTAGCATTTCTCTCCTTCCAA 58.896 43.478 0.00 0.00 0.00 3.53
6548 6673 4.536090 TCCTAGCATTTCTCTCCTTCCAAA 59.464 41.667 0.00 0.00 0.00 3.28
6549 6674 5.192522 TCCTAGCATTTCTCTCCTTCCAAAT 59.807 40.000 0.00 0.00 0.00 2.32
6550 6675 5.890419 CCTAGCATTTCTCTCCTTCCAAATT 59.110 40.000 0.00 0.00 0.00 1.82
6551 6676 6.379417 CCTAGCATTTCTCTCCTTCCAAATTT 59.621 38.462 0.00 0.00 0.00 1.82
6552 6677 6.278172 AGCATTTCTCTCCTTCCAAATTTC 57.722 37.500 0.00 0.00 0.00 2.17
6553 6678 5.186603 AGCATTTCTCTCCTTCCAAATTTCC 59.813 40.000 0.00 0.00 0.00 3.13
6554 6679 5.625426 GCATTTCTCTCCTTCCAAATTTCCC 60.625 44.000 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.754002 AGCGACTTACTTGAGACCTACC 59.246 50.000 0.00 0.00 0.00 3.18
40 41 6.294473 TCTTCTTCTTCTGCTTCTGTGAAAT 58.706 36.000 0.00 0.00 0.00 2.17
47 48 4.458642 GGCAATTCTTCTTCTTCTGCTTCT 59.541 41.667 0.00 0.00 0.00 2.85
48 49 4.671250 CGGCAATTCTTCTTCTTCTGCTTC 60.671 45.833 0.00 0.00 0.00 3.86
49 50 3.190118 CGGCAATTCTTCTTCTTCTGCTT 59.810 43.478 0.00 0.00 0.00 3.91
52 53 3.181526 CGACGGCAATTCTTCTTCTTCTG 60.182 47.826 0.00 0.00 0.00 3.02
55 56 2.076863 CCGACGGCAATTCTTCTTCTT 58.923 47.619 0.00 0.00 0.00 2.52
85 86 2.670934 GCTGGGCTGTGTCACTGG 60.671 66.667 11.36 2.66 0.00 4.00
89 90 4.624364 CCGTGCTGGGCTGTGTCA 62.624 66.667 0.00 0.00 0.00 3.58
144 145 4.081030 CTTCACAGCTGCGGTGCG 62.081 66.667 24.91 15.48 36.22 5.34
145 146 4.395583 GCTTCACAGCTGCGGTGC 62.396 66.667 24.91 12.24 43.51 5.01
237 243 3.008923 TCAATTGATTTGGGGAAAAGGGC 59.991 43.478 3.38 0.00 35.92 5.19
898 941 4.521062 CTTGCTCCTCTCGGCCGG 62.521 72.222 27.83 16.54 0.00 6.13
900 943 3.612247 TTGCTTGCTCCTCTCGGCC 62.612 63.158 0.00 0.00 0.00 6.13
901 944 2.046892 TTGCTTGCTCCTCTCGGC 60.047 61.111 0.00 0.00 0.00 5.54
902 945 0.177604 ATCTTGCTTGCTCCTCTCGG 59.822 55.000 0.00 0.00 0.00 4.63
903 946 2.021355 AATCTTGCTTGCTCCTCTCG 57.979 50.000 0.00 0.00 0.00 4.04
904 947 2.351111 CGAAATCTTGCTTGCTCCTCTC 59.649 50.000 0.00 0.00 0.00 3.20
905 948 2.289945 ACGAAATCTTGCTTGCTCCTCT 60.290 45.455 0.00 0.00 0.00 3.69
906 949 2.079925 ACGAAATCTTGCTTGCTCCTC 58.920 47.619 0.00 0.00 0.00 3.71
907 950 2.079925 GACGAAATCTTGCTTGCTCCT 58.920 47.619 0.00 0.00 0.00 3.69
908 951 2.079925 AGACGAAATCTTGCTTGCTCC 58.920 47.619 0.00 0.00 31.62 4.70
909 952 2.159599 CCAGACGAAATCTTGCTTGCTC 60.160 50.000 0.00 0.00 34.41 4.26
1100 1160 2.224621 CCAAAAGACTCTGCTTCCTCCA 60.225 50.000 0.00 0.00 0.00 3.86
1115 1175 3.793797 ACCAAGAACCGAAACCAAAAG 57.206 42.857 0.00 0.00 0.00 2.27
1302 1362 2.722201 GGTGGCCTCGAAGATCGGT 61.722 63.158 3.32 0.00 40.88 4.69
1396 1464 5.443261 TCGCTTTCGATTGATGATTAATGC 58.557 37.500 0.00 0.00 40.21 3.56
1607 1693 2.211353 AACGCCGCAAGCTTTTTAAA 57.789 40.000 0.00 0.00 40.39 1.52
1785 1871 4.508124 CAGCGGATGTGTCTAAACTAATCC 59.492 45.833 0.00 0.00 35.97 3.01
1812 1898 5.248640 TGATCTCTTAAAGCTCAAACCAGG 58.751 41.667 0.00 0.00 27.33 4.45
1840 1926 5.049167 GGTTGATGTGAGATGAGATGAGAC 58.951 45.833 0.00 0.00 0.00 3.36
1841 1927 4.713321 TGGTTGATGTGAGATGAGATGAGA 59.287 41.667 0.00 0.00 0.00 3.27
1842 1928 5.019785 TGGTTGATGTGAGATGAGATGAG 57.980 43.478 0.00 0.00 0.00 2.90
1843 1929 4.713321 TCTGGTTGATGTGAGATGAGATGA 59.287 41.667 0.00 0.00 0.00 2.92
1844 1930 5.019785 TCTGGTTGATGTGAGATGAGATG 57.980 43.478 0.00 0.00 0.00 2.90
1909 1995 1.149174 CACAGGCACAACCCTCAGT 59.851 57.895 0.00 0.00 40.58 3.41
1912 1998 2.985847 GGCACAGGCACAACCCTC 60.986 66.667 0.00 0.00 43.71 4.30
1915 2001 2.519302 ACAGGCACAGGCACAACC 60.519 61.111 0.00 0.00 43.71 3.77
1917 2003 3.218470 GCACAGGCACAGGCACAA 61.218 61.111 0.00 0.00 43.71 3.33
1919 2005 4.962836 AGGCACAGGCACAGGCAC 62.963 66.667 0.00 0.00 43.71 5.01
1921 2007 4.962836 ACAGGCACAGGCACAGGC 62.963 66.667 0.00 0.00 43.71 4.85
1923 2009 3.036577 CAACAGGCACAGGCACAG 58.963 61.111 0.00 0.00 43.71 3.66
1958 2048 0.036765 AAGCAAATGCACCATGCCTG 60.037 50.000 14.52 0.00 44.23 4.85
1985 2075 6.627276 CAGTAACCAATTACATAATGAACGCG 59.373 38.462 3.53 3.53 42.83 6.01
1995 2085 7.831193 AGAGCAAGAATCAGTAACCAATTACAT 59.169 33.333 0.44 0.00 42.83 2.29
2026 2116 2.355837 GCCGTTCTCACTGTCGCA 60.356 61.111 0.00 0.00 0.00 5.10
2049 2139 0.034896 TCCGTGGAGAAGACTTTGCC 59.965 55.000 0.00 0.00 0.00 4.52
2064 2154 3.753434 CTCTGCAGCGTCCTCCGT 61.753 66.667 9.47 0.00 39.32 4.69
2317 2407 3.181424 TGTCCCCAGAAATGATCAACCAA 60.181 43.478 0.00 0.00 0.00 3.67
2319 2409 2.755103 GTGTCCCCAGAAATGATCAACC 59.245 50.000 0.00 0.00 0.00 3.77
2353 2445 9.305925 GAAATTCAGATCTCAAACAAAAAGTGT 57.694 29.630 0.00 0.00 44.64 3.55
2354 2446 9.525409 AGAAATTCAGATCTCAAACAAAAAGTG 57.475 29.630 0.00 0.00 0.00 3.16
2383 2475 1.651770 TCTCCCCCTTCACTACAGGAT 59.348 52.381 0.00 0.00 32.41 3.24
2557 2649 2.541907 ATTGTGGAGGTGGCTGGCT 61.542 57.895 2.00 0.00 0.00 4.75
2561 2653 2.036256 GGCATTGTGGAGGTGGCT 59.964 61.111 0.00 0.00 35.74 4.75
2650 2750 5.404096 TGAAGAAATGTGCTATGCATGTTG 58.596 37.500 10.16 0.43 41.91 3.33
2713 2813 1.542915 CTCAACGGGTTTCTCGAGGTA 59.457 52.381 13.56 0.00 0.00 3.08
2728 2828 0.394565 ACCAGTCACCAGAGCTCAAC 59.605 55.000 17.77 5.85 0.00 3.18
2867 2967 4.174411 TGTCTGAGACATCCAGTTTACG 57.826 45.455 11.93 0.00 37.67 3.18
2920 3020 1.153469 CCCTCGCCTGCTCTCTTTC 60.153 63.158 0.00 0.00 0.00 2.62
2929 3029 0.393537 AAAGATCTTGCCCTCGCCTG 60.394 55.000 9.17 0.00 0.00 4.85
3133 3233 1.064208 AGCTGTACACGTAGATCTGCG 59.936 52.381 28.41 28.41 44.18 5.18
3169 3269 1.907936 AGAAGCAGCTCAGAGTTGGAT 59.092 47.619 15.46 0.00 0.00 3.41
3223 3323 7.177216 TGCAAAATGGACATATCTCTGTTCTTT 59.823 33.333 0.00 0.00 0.00 2.52
3229 3329 6.688637 TCTTGCAAAATGGACATATCTCTG 57.311 37.500 0.00 0.00 0.00 3.35
3281 3381 4.625972 TTGACAGTGCATGCTCATATTG 57.374 40.909 20.33 11.74 0.00 1.90
3410 3510 6.002704 TCTTCTCTTGTAGTTCCGAACTAGT 58.997 40.000 19.30 0.00 44.16 2.57
3562 3662 3.623060 GCTCTCTCAGTTGTGTTTGTTCA 59.377 43.478 0.00 0.00 0.00 3.18
3846 3946 2.543445 CGTTCATTGGCACTGAAAGCAA 60.543 45.455 20.06 0.00 37.60 3.91
3908 4008 0.035881 TCCAACTGGCTCTTCTGCAG 59.964 55.000 7.63 7.63 34.44 4.41
3932 4032 1.448540 CGTGGGCCTTCTGCAGTAG 60.449 63.158 14.67 13.80 43.89 2.57
4042 4144 1.123861 TGCTCTTGAGCTCCACCACT 61.124 55.000 21.17 0.00 35.49 4.00
4096 4198 9.521503 TCTGATAGATCATTTAACTTTGACTCG 57.478 33.333 0.00 0.00 36.02 4.18
4177 4279 1.623311 TGCTCATTCCTTTCCACGAGA 59.377 47.619 0.00 0.00 0.00 4.04
4216 4318 3.328505 CATGTCCTTTTCACCATTTGCC 58.671 45.455 0.00 0.00 0.00 4.52
4303 4405 3.501445 GCTCCTCCAAATATGACTGCATC 59.499 47.826 0.00 0.00 35.94 3.91
4310 4412 5.211973 AGTGTCTAGCTCCTCCAAATATGA 58.788 41.667 0.00 0.00 0.00 2.15
4328 4430 1.795286 CTTGGAGCGTTTCAGAGTGTC 59.205 52.381 0.00 0.00 0.00 3.67
4540 4642 6.839820 ATCTGGTTTTCGATATTTACCGTC 57.160 37.500 0.00 0.00 0.00 4.79
4651 4753 2.658373 TGCCTTCTTCGTTACGCATA 57.342 45.000 0.00 0.00 0.00 3.14
4653 4755 2.658373 TATGCCTTCTTCGTTACGCA 57.342 45.000 0.00 0.00 0.00 5.24
4654 4756 2.864343 ACATATGCCTTCTTCGTTACGC 59.136 45.455 1.58 0.00 0.00 4.42
4655 4757 6.578020 TTTACATATGCCTTCTTCGTTACG 57.422 37.500 1.58 0.00 0.00 3.18
4656 4758 9.472361 TCTATTTACATATGCCTTCTTCGTTAC 57.528 33.333 1.58 0.00 0.00 2.50
4659 4761 9.862371 CTATCTATTTACATATGCCTTCTTCGT 57.138 33.333 1.58 0.00 0.00 3.85
4812 4914 1.202855 ACTGTCCAGCATGCTGACTTT 60.203 47.619 42.21 25.01 46.30 2.66
4838 4940 6.436843 CCACAAACTCATGGGTTATAAGAC 57.563 41.667 12.34 0.00 31.83 3.01
4873 4977 7.120873 TCTCTACACAGTGACACCTACTTATTC 59.879 40.741 7.81 0.00 0.00 1.75
4917 5022 7.578189 AGATTTATCTTCCCATGTGCAACAAAG 60.578 37.037 0.00 0.00 42.67 2.77
5112 5217 4.584325 AGCATAACATGGTGTGTCACTTTT 59.416 37.500 9.41 0.00 41.14 2.27
5148 5253 1.732259 CTTCGAATTAGCGTGCTGGTT 59.268 47.619 4.25 0.00 0.00 3.67
5149 5254 1.359848 CTTCGAATTAGCGTGCTGGT 58.640 50.000 4.25 0.00 0.00 4.00
5150 5255 0.026803 GCTTCGAATTAGCGTGCTGG 59.973 55.000 4.25 0.00 0.00 4.85
5157 5262 2.633299 CTTGATGCGCTTCGAATTAGC 58.367 47.619 17.33 5.50 35.29 3.09
5278 5383 7.598189 AAAGTTAAAGCTAAGAAGACCGATC 57.402 36.000 0.00 0.00 0.00 3.69
5307 5412 4.160439 CACTTCTGCTCCTGTATAACTGGA 59.840 45.833 5.67 5.67 42.83 3.86
5308 5413 4.081420 ACACTTCTGCTCCTGTATAACTGG 60.081 45.833 0.00 0.00 38.41 4.00
5309 5414 5.078411 ACACTTCTGCTCCTGTATAACTG 57.922 43.478 0.00 0.00 0.00 3.16
5310 5415 5.020132 AGACACTTCTGCTCCTGTATAACT 58.980 41.667 0.00 0.00 0.00 2.24
5311 5416 5.105752 CAGACACTTCTGCTCCTGTATAAC 58.894 45.833 0.00 0.00 42.99 1.89
5312 5417 5.330455 CAGACACTTCTGCTCCTGTATAA 57.670 43.478 0.00 0.00 42.99 0.98
5313 5418 4.991153 CAGACACTTCTGCTCCTGTATA 57.009 45.455 0.00 0.00 42.99 1.47
5331 5436 3.329386 GACAGCAGCAAAGTATGTCAGA 58.671 45.455 5.55 0.00 39.97 3.27
5352 5457 0.097674 CCTGGCAGCGAGAAAAATCG 59.902 55.000 9.56 0.00 45.48 3.34
5408 5513 1.134280 CGCCTTGTTCATCTCCCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
5412 5517 1.303309 CATCGCCTTGTTCATCTCCC 58.697 55.000 0.00 0.00 0.00 4.30
5500 5605 4.079850 ACCAGCTGCTGCCTCTCG 62.080 66.667 23.86 11.54 40.80 4.04
5775 5882 3.825908 AACATTATTGTGTGGGGGAGT 57.174 42.857 0.00 0.00 35.83 3.85
5776 5883 5.656416 ACATAAACATTATTGTGTGGGGGAG 59.344 40.000 0.00 0.00 33.98 4.30
5858 5969 0.530650 CACACACACACTCGGCTCTT 60.531 55.000 0.00 0.00 0.00 2.85
5865 5976 1.348250 CACGCACACACACACACTC 59.652 57.895 0.00 0.00 0.00 3.51
5880 5991 5.178623 AGAATTATACAACACCACACACACG 59.821 40.000 0.00 0.00 0.00 4.49
5883 5994 5.938125 AGGAGAATTATACAACACCACACAC 59.062 40.000 0.00 0.00 0.00 3.82
5889 6000 7.865706 AACATGAGGAGAATTATACAACACC 57.134 36.000 0.00 0.00 0.00 4.16
5890 6001 8.184192 CCAAACATGAGGAGAATTATACAACAC 58.816 37.037 0.00 0.00 0.00 3.32
5891 6002 7.148086 GCCAAACATGAGGAGAATTATACAACA 60.148 37.037 0.00 0.00 0.00 3.33
5892 6003 7.067494 AGCCAAACATGAGGAGAATTATACAAC 59.933 37.037 0.00 0.00 0.00 3.32
5893 6004 7.067372 CAGCCAAACATGAGGAGAATTATACAA 59.933 37.037 0.00 0.00 0.00 2.41
5908 6019 0.675083 TTCCAGCACAGCCAAACATG 59.325 50.000 0.00 0.00 0.00 3.21
5949 6060 4.262036 GGTTCAAACTGTCCCTTCATTTCC 60.262 45.833 0.00 0.00 0.00 3.13
5964 6075 6.720012 TGCTTCAAAAGAAAAGGTTCAAAC 57.280 33.333 0.00 0.00 36.09 2.93
6002 6113 0.032678 CGATAGGCTGCGAGTCCAAT 59.967 55.000 0.00 0.00 0.00 3.16
6190 6311 1.133450 CCTGGACGGAGATAGGGAGAA 60.133 57.143 0.00 0.00 33.16 2.87
6212 6333 2.265739 GTGGTGATCTGCCGAGCA 59.734 61.111 0.00 0.00 36.92 4.26
6313 6438 6.850555 CAAATCCTTTGCCTTGTTTCAAAAA 58.149 32.000 0.00 0.00 33.36 1.94
6314 6439 6.434018 CAAATCCTTTGCCTTGTTTCAAAA 57.566 33.333 0.00 0.00 33.36 2.44
6335 6460 9.466497 ACTCTCTCTTAATTAATGAAATGGCAA 57.534 29.630 0.00 0.00 0.00 4.52
6336 6461 9.466497 AACTCTCTCTTAATTAATGAAATGGCA 57.534 29.630 0.00 0.00 0.00 4.92
6337 6462 9.727627 CAACTCTCTCTTAATTAATGAAATGGC 57.272 33.333 0.00 0.00 0.00 4.40
6348 6473 9.495572 CTTGGACTTTACAACTCTCTCTTAATT 57.504 33.333 0.00 0.00 0.00 1.40
6349 6474 8.097662 CCTTGGACTTTACAACTCTCTCTTAAT 58.902 37.037 0.00 0.00 0.00 1.40
6350 6475 7.289317 TCCTTGGACTTTACAACTCTCTCTTAA 59.711 37.037 0.00 0.00 0.00 1.85
6351 6476 6.781014 TCCTTGGACTTTACAACTCTCTCTTA 59.219 38.462 0.00 0.00 0.00 2.10
6352 6477 5.602978 TCCTTGGACTTTACAACTCTCTCTT 59.397 40.000 0.00 0.00 0.00 2.85
6353 6478 5.011227 GTCCTTGGACTTTACAACTCTCTCT 59.989 44.000 12.20 0.00 0.00 3.10
6354 6479 5.221461 TGTCCTTGGACTTTACAACTCTCTC 60.221 44.000 19.11 0.00 0.00 3.20
6355 6480 4.654262 TGTCCTTGGACTTTACAACTCTCT 59.346 41.667 19.11 0.00 0.00 3.10
6356 6481 4.957296 TGTCCTTGGACTTTACAACTCTC 58.043 43.478 19.11 0.00 0.00 3.20
6357 6482 5.123936 GTTGTCCTTGGACTTTACAACTCT 58.876 41.667 19.11 0.00 44.02 3.24
6358 6483 4.879545 TGTTGTCCTTGGACTTTACAACTC 59.120 41.667 19.11 0.00 46.29 3.01
6359 6484 4.850680 TGTTGTCCTTGGACTTTACAACT 58.149 39.130 19.11 0.00 46.29 3.16
6360 6485 5.570234 TTGTTGTCCTTGGACTTTACAAC 57.430 39.130 19.11 15.06 46.32 3.32
6361 6486 5.888724 TGATTGTTGTCCTTGGACTTTACAA 59.111 36.000 23.51 23.51 0.00 2.41
6362 6487 5.441500 TGATTGTTGTCCTTGGACTTTACA 58.558 37.500 19.11 16.29 0.00 2.41
6363 6488 6.575162 ATGATTGTTGTCCTTGGACTTTAC 57.425 37.500 19.11 14.37 0.00 2.01
6364 6489 7.227873 TGTATGATTGTTGTCCTTGGACTTTA 58.772 34.615 19.11 4.33 0.00 1.85
6365 6490 6.068010 TGTATGATTGTTGTCCTTGGACTTT 58.932 36.000 19.11 1.81 0.00 2.66
6366 6491 5.630121 TGTATGATTGTTGTCCTTGGACTT 58.370 37.500 19.11 1.51 0.00 3.01
6367 6492 5.241403 TGTATGATTGTTGTCCTTGGACT 57.759 39.130 19.11 0.13 0.00 3.85
6368 6493 5.957842 TTGTATGATTGTTGTCCTTGGAC 57.042 39.130 12.54 12.54 0.00 4.02
6369 6494 5.418524 CCATTGTATGATTGTTGTCCTTGGA 59.581 40.000 0.00 0.00 0.00 3.53
6370 6495 5.653507 CCATTGTATGATTGTTGTCCTTGG 58.346 41.667 0.00 0.00 0.00 3.61
6371 6496 5.104374 GCCATTGTATGATTGTTGTCCTTG 58.896 41.667 0.00 0.00 0.00 3.61
6372 6497 4.160252 GGCCATTGTATGATTGTTGTCCTT 59.840 41.667 0.00 0.00 0.00 3.36
6373 6498 3.701040 GGCCATTGTATGATTGTTGTCCT 59.299 43.478 0.00 0.00 0.00 3.85
6374 6499 3.446873 TGGCCATTGTATGATTGTTGTCC 59.553 43.478 0.00 0.00 0.00 4.02
6375 6500 4.717233 TGGCCATTGTATGATTGTTGTC 57.283 40.909 0.00 0.00 0.00 3.18
6376 6501 4.771577 TCTTGGCCATTGTATGATTGTTGT 59.228 37.500 6.09 0.00 0.00 3.32
6377 6502 5.327616 TCTTGGCCATTGTATGATTGTTG 57.672 39.130 6.09 0.00 0.00 3.33
6378 6503 7.658525 TTATCTTGGCCATTGTATGATTGTT 57.341 32.000 6.09 0.00 0.00 2.83
6379 6504 7.658525 TTTATCTTGGCCATTGTATGATTGT 57.341 32.000 6.09 0.00 0.00 2.71
6380 6505 6.643770 GCTTTATCTTGGCCATTGTATGATTG 59.356 38.462 6.09 0.00 0.00 2.67
6381 6506 6.324512 TGCTTTATCTTGGCCATTGTATGATT 59.675 34.615 6.09 0.00 0.00 2.57
6382 6507 5.834742 TGCTTTATCTTGGCCATTGTATGAT 59.165 36.000 6.09 6.68 0.00 2.45
6383 6508 5.199723 TGCTTTATCTTGGCCATTGTATGA 58.800 37.500 6.09 0.00 0.00 2.15
6384 6509 5.518848 TGCTTTATCTTGGCCATTGTATG 57.481 39.130 6.09 0.00 0.00 2.39
6385 6510 5.658190 AGTTGCTTTATCTTGGCCATTGTAT 59.342 36.000 6.09 0.07 0.00 2.29
6386 6511 5.016173 AGTTGCTTTATCTTGGCCATTGTA 58.984 37.500 6.09 0.00 0.00 2.41
6387 6512 3.834231 AGTTGCTTTATCTTGGCCATTGT 59.166 39.130 6.09 0.00 0.00 2.71
6388 6513 4.460948 AGTTGCTTTATCTTGGCCATTG 57.539 40.909 6.09 2.48 0.00 2.82
6389 6514 5.264395 AGTAGTTGCTTTATCTTGGCCATT 58.736 37.500 6.09 0.00 0.00 3.16
6390 6515 4.860022 AGTAGTTGCTTTATCTTGGCCAT 58.140 39.130 6.09 0.00 0.00 4.40
6391 6516 4.261801 GAGTAGTTGCTTTATCTTGGCCA 58.738 43.478 0.00 0.00 0.00 5.36
6392 6517 4.095036 GTGAGTAGTTGCTTTATCTTGGCC 59.905 45.833 0.00 0.00 0.00 5.36
6393 6518 4.201724 CGTGAGTAGTTGCTTTATCTTGGC 60.202 45.833 0.00 0.00 0.00 4.52
6394 6519 4.330074 CCGTGAGTAGTTGCTTTATCTTGG 59.670 45.833 0.00 0.00 0.00 3.61
6395 6520 4.929808 ACCGTGAGTAGTTGCTTTATCTTG 59.070 41.667 0.00 0.00 0.00 3.02
6396 6521 4.929808 CACCGTGAGTAGTTGCTTTATCTT 59.070 41.667 0.00 0.00 0.00 2.40
6397 6522 4.021368 ACACCGTGAGTAGTTGCTTTATCT 60.021 41.667 5.28 0.00 0.00 1.98
6398 6523 4.243270 ACACCGTGAGTAGTTGCTTTATC 58.757 43.478 5.28 0.00 0.00 1.75
6399 6524 4.267349 ACACCGTGAGTAGTTGCTTTAT 57.733 40.909 5.28 0.00 0.00 1.40
6400 6525 3.738830 ACACCGTGAGTAGTTGCTTTA 57.261 42.857 5.28 0.00 0.00 1.85
6401 6526 2.614829 ACACCGTGAGTAGTTGCTTT 57.385 45.000 5.28 0.00 0.00 3.51
6402 6527 3.738830 TTACACCGTGAGTAGTTGCTT 57.261 42.857 5.28 0.00 0.00 3.91
6403 6528 3.738830 TTTACACCGTGAGTAGTTGCT 57.261 42.857 5.28 0.00 0.00 3.91
6404 6529 5.352643 AATTTTACACCGTGAGTAGTTGC 57.647 39.130 5.28 0.00 0.00 4.17
6405 6530 7.410800 TGTAATTTTACACCGTGAGTAGTTG 57.589 36.000 5.28 0.00 38.64 3.16
6406 6531 7.874016 TGATGTAATTTTACACCGTGAGTAGTT 59.126 33.333 5.28 0.00 45.47 2.24
6407 6532 7.380536 TGATGTAATTTTACACCGTGAGTAGT 58.619 34.615 5.28 0.00 45.47 2.73
6408 6533 7.821595 TGATGTAATTTTACACCGTGAGTAG 57.178 36.000 5.28 0.00 45.47 2.57
6409 6534 7.148540 GCTTGATGTAATTTTACACCGTGAGTA 60.149 37.037 5.28 0.00 45.47 2.59
6410 6535 6.348213 GCTTGATGTAATTTTACACCGTGAGT 60.348 38.462 5.28 0.00 45.47 3.41
6411 6536 6.021596 GCTTGATGTAATTTTACACCGTGAG 58.978 40.000 5.28 0.00 45.47 3.51
6412 6537 5.703592 AGCTTGATGTAATTTTACACCGTGA 59.296 36.000 5.28 0.00 45.47 4.35
6413 6538 5.938322 AGCTTGATGTAATTTTACACCGTG 58.062 37.500 5.34 0.00 45.47 4.94
6414 6539 5.938125 AGAGCTTGATGTAATTTTACACCGT 59.062 36.000 5.34 0.00 45.47 4.83
6415 6540 6.422776 AGAGCTTGATGTAATTTTACACCG 57.577 37.500 5.34 0.00 45.47 4.94
6416 6541 9.109393 TCATAGAGCTTGATGTAATTTTACACC 57.891 33.333 5.34 0.00 45.47 4.16
6417 6542 9.922305 GTCATAGAGCTTGATGTAATTTTACAC 57.078 33.333 5.34 1.90 45.47 2.90
6418 6543 9.665719 TGTCATAGAGCTTGATGTAATTTTACA 57.334 29.630 5.68 5.68 46.55 2.41
6419 6544 9.922305 GTGTCATAGAGCTTGATGTAATTTTAC 57.078 33.333 8.24 0.00 0.00 2.01
6420 6545 9.109393 GGTGTCATAGAGCTTGATGTAATTTTA 57.891 33.333 8.24 0.00 0.00 1.52
6421 6546 7.067494 GGGTGTCATAGAGCTTGATGTAATTTT 59.933 37.037 8.24 0.00 0.00 1.82
6422 6547 6.543831 GGGTGTCATAGAGCTTGATGTAATTT 59.456 38.462 8.24 0.00 0.00 1.82
6423 6548 6.058183 GGGTGTCATAGAGCTTGATGTAATT 58.942 40.000 8.24 0.00 0.00 1.40
6424 6549 5.615289 GGGTGTCATAGAGCTTGATGTAAT 58.385 41.667 8.24 0.00 0.00 1.89
6425 6550 4.441495 CGGGTGTCATAGAGCTTGATGTAA 60.441 45.833 8.24 0.00 0.00 2.41
6426 6551 3.068165 CGGGTGTCATAGAGCTTGATGTA 59.932 47.826 8.24 0.00 0.00 2.29
6427 6552 2.159043 CGGGTGTCATAGAGCTTGATGT 60.159 50.000 8.24 0.00 0.00 3.06
6428 6553 2.477825 CGGGTGTCATAGAGCTTGATG 58.522 52.381 0.00 0.00 0.00 3.07
6429 6554 1.202580 GCGGGTGTCATAGAGCTTGAT 60.203 52.381 0.00 0.00 0.00 2.57
6430 6555 0.175760 GCGGGTGTCATAGAGCTTGA 59.824 55.000 0.00 0.00 0.00 3.02
6431 6556 0.811616 GGCGGGTGTCATAGAGCTTG 60.812 60.000 0.00 0.00 0.00 4.01
6432 6557 1.264749 TGGCGGGTGTCATAGAGCTT 61.265 55.000 0.00 0.00 0.00 3.74
6433 6558 1.264749 TTGGCGGGTGTCATAGAGCT 61.265 55.000 0.00 0.00 0.00 4.09
6434 6559 0.392461 TTTGGCGGGTGTCATAGAGC 60.392 55.000 0.00 0.00 0.00 4.09
6435 6560 1.656652 CTTTGGCGGGTGTCATAGAG 58.343 55.000 0.00 0.00 31.30 2.43
6436 6561 0.392461 GCTTTGGCGGGTGTCATAGA 60.392 55.000 0.00 0.00 31.30 1.98
6437 6562 1.376609 GGCTTTGGCGGGTGTCATAG 61.377 60.000 0.00 0.00 39.81 2.23
6438 6563 1.377987 GGCTTTGGCGGGTGTCATA 60.378 57.895 0.00 0.00 39.81 2.15
6439 6564 2.676471 GGCTTTGGCGGGTGTCAT 60.676 61.111 0.00 0.00 39.81 3.06
6440 6565 4.966787 GGGCTTTGGCGGGTGTCA 62.967 66.667 0.00 0.00 39.81 3.58
6441 6566 4.966787 TGGGCTTTGGCGGGTGTC 62.967 66.667 0.00 0.00 39.81 3.67
6444 6569 4.974721 CTGTGGGCTTTGGCGGGT 62.975 66.667 0.00 0.00 39.81 5.28
6456 6581 4.864334 GATGAGGCGGCCCTGTGG 62.864 72.222 17.02 0.00 43.12 4.17
6457 6582 4.864334 GGATGAGGCGGCCCTGTG 62.864 72.222 17.02 0.00 43.12 3.66
6459 6584 2.055689 TTATGGATGAGGCGGCCCTG 62.056 60.000 17.02 0.00 43.12 4.45
6460 6585 1.136329 ATTATGGATGAGGCGGCCCT 61.136 55.000 17.02 2.62 46.74 5.19
6461 6586 0.251341 AATTATGGATGAGGCGGCCC 60.251 55.000 17.02 8.02 0.00 5.80
6462 6587 1.620822 AAATTATGGATGAGGCGGCC 58.379 50.000 12.11 12.11 0.00 6.13
6463 6588 3.733443 AAAAATTATGGATGAGGCGGC 57.267 42.857 0.00 0.00 0.00 6.53
6481 6606 6.565811 CGTCTTTGATGATTCTCGTGGAAAAA 60.566 38.462 0.00 0.00 37.49 1.94
6482 6607 5.107104 CGTCTTTGATGATTCTCGTGGAAAA 60.107 40.000 0.00 0.00 37.49 2.29
6483 6608 4.388773 CGTCTTTGATGATTCTCGTGGAAA 59.611 41.667 0.00 0.00 37.49 3.13
6484 6609 3.926527 CGTCTTTGATGATTCTCGTGGAA 59.073 43.478 0.00 0.00 38.41 3.53
6485 6610 3.511699 CGTCTTTGATGATTCTCGTGGA 58.488 45.455 0.00 0.00 0.00 4.02
6486 6611 2.029728 GCGTCTTTGATGATTCTCGTGG 59.970 50.000 0.00 0.00 0.00 4.94
6487 6612 2.284684 CGCGTCTTTGATGATTCTCGTG 60.285 50.000 0.00 0.00 0.00 4.35
6488 6613 1.920574 CGCGTCTTTGATGATTCTCGT 59.079 47.619 0.00 0.00 0.00 4.18
6489 6614 1.256376 CCGCGTCTTTGATGATTCTCG 59.744 52.381 4.92 0.00 0.00 4.04
6490 6615 2.540515 TCCGCGTCTTTGATGATTCTC 58.459 47.619 4.92 0.00 0.00 2.87
6491 6616 2.672961 TCCGCGTCTTTGATGATTCT 57.327 45.000 4.92 0.00 0.00 2.40
6492 6617 3.417185 GTTTCCGCGTCTTTGATGATTC 58.583 45.455 4.92 0.00 0.00 2.52
6493 6618 2.159707 CGTTTCCGCGTCTTTGATGATT 60.160 45.455 4.92 0.00 0.00 2.57
6494 6619 1.393539 CGTTTCCGCGTCTTTGATGAT 59.606 47.619 4.92 0.00 0.00 2.45
6495 6620 0.787787 CGTTTCCGCGTCTTTGATGA 59.212 50.000 4.92 0.00 0.00 2.92
6496 6621 0.511221 ACGTTTCCGCGTCTTTGATG 59.489 50.000 4.92 0.00 41.71 3.07
6497 6622 1.193874 GAACGTTTCCGCGTCTTTGAT 59.806 47.619 4.92 0.00 45.00 2.57
6498 6623 0.578211 GAACGTTTCCGCGTCTTTGA 59.422 50.000 4.92 0.00 45.00 2.69
6499 6624 0.383860 GGAACGTTTCCGCGTCTTTG 60.384 55.000 4.92 0.00 45.00 2.77
6500 6625 1.936658 GGAACGTTTCCGCGTCTTT 59.063 52.632 4.92 0.00 45.00 2.52
6501 6626 3.633951 GGAACGTTTCCGCGTCTT 58.366 55.556 4.92 0.00 45.00 3.01
6514 6639 3.477210 AATGCTAGGATCTTCCGGAAC 57.523 47.619 14.35 3.41 42.75 3.62
6515 6640 3.711704 AGAAATGCTAGGATCTTCCGGAA 59.288 43.478 17.73 17.73 42.75 4.30
6516 6641 3.309296 AGAAATGCTAGGATCTTCCGGA 58.691 45.455 0.00 0.00 42.75 5.14
6517 6642 3.323403 AGAGAAATGCTAGGATCTTCCGG 59.677 47.826 0.00 0.00 42.75 5.14
6518 6643 4.555262 GAGAGAAATGCTAGGATCTTCCG 58.445 47.826 0.00 0.00 42.75 4.30
6519 6644 4.592778 AGGAGAGAAATGCTAGGATCTTCC 59.407 45.833 0.00 3.27 36.58 3.46
6520 6645 5.806654 AGGAGAGAAATGCTAGGATCTTC 57.193 43.478 0.00 4.41 0.00 2.87
6521 6646 5.071653 GGAAGGAGAGAAATGCTAGGATCTT 59.928 44.000 0.00 0.00 0.00 2.40
6522 6647 4.592778 GGAAGGAGAGAAATGCTAGGATCT 59.407 45.833 0.00 0.00 0.00 2.75
6523 6648 4.346418 TGGAAGGAGAGAAATGCTAGGATC 59.654 45.833 0.00 0.00 0.00 3.36
6524 6649 4.302067 TGGAAGGAGAGAAATGCTAGGAT 58.698 43.478 0.00 0.00 0.00 3.24
6525 6650 3.724478 TGGAAGGAGAGAAATGCTAGGA 58.276 45.455 0.00 0.00 0.00 2.94
6526 6651 4.494091 TTGGAAGGAGAGAAATGCTAGG 57.506 45.455 0.00 0.00 0.00 3.02
6527 6652 7.401955 AAATTTGGAAGGAGAGAAATGCTAG 57.598 36.000 0.00 0.00 0.00 3.42
6528 6653 6.378280 GGAAATTTGGAAGGAGAGAAATGCTA 59.622 38.462 0.00 0.00 0.00 3.49
6529 6654 5.186603 GGAAATTTGGAAGGAGAGAAATGCT 59.813 40.000 0.00 0.00 0.00 3.79
6530 6655 5.414360 GGAAATTTGGAAGGAGAGAAATGC 58.586 41.667 0.00 0.00 0.00 3.56
6531 6656 5.970592 GGGAAATTTGGAAGGAGAGAAATG 58.029 41.667 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.