Multiple sequence alignment - TraesCS1A01G174800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G174800 chr1A 100.000 4263 0 0 1 4263 312582634 312586896 0.000000e+00 7873.0
1 TraesCS1A01G174800 chr1A 99.550 667 3 0 3597 4263 312602634 312603300 0.000000e+00 1216.0
2 TraesCS1A01G174800 chr1A 98.801 667 8 0 3597 4263 312594470 312595136 0.000000e+00 1188.0
3 TraesCS1A01G174800 chr1B 93.765 2983 125 25 661 3596 340467459 340464491 0.000000e+00 4421.0
4 TraesCS1A01G174800 chr1B 91.525 177 15 0 490 666 340472947 340472771 1.180000e-60 244.0
5 TraesCS1A01G174800 chr1B 88.750 80 6 2 414 491 340473286 340473208 1.260000e-15 95.3
6 TraesCS1A01G174800 chr1B 93.478 46 3 0 116 161 340473802 340473757 7.650000e-08 69.4
7 TraesCS1A01G174800 chr1D 91.278 2018 132 20 1602 3596 234909796 234907800 0.000000e+00 2712.0
8 TraesCS1A01G174800 chr1D 90.093 1070 61 20 420 1473 234910756 234909716 0.000000e+00 1347.0
9 TraesCS1A01G174800 chr1D 88.235 272 32 0 152 423 97740141 97740412 4.110000e-85 326.0
10 TraesCS1A01G174800 chr1D 94.000 50 2 1 116 164 234910802 234910753 1.640000e-09 75.0
11 TraesCS1A01G174800 chrUn 99.550 667 3 0 3597 4263 381174479 381173813 0.000000e+00 1216.0
12 TraesCS1A01G174800 chrUn 100.000 33 0 0 4230 4262 13874966 13874934 1.280000e-05 62.1
13 TraesCS1A01G174800 chr6B 91.988 649 38 13 3597 4238 412575830 412576471 0.000000e+00 898.0
14 TraesCS1A01G174800 chr6B 91.371 649 42 13 3597 4238 354997654 354998295 0.000000e+00 876.0
15 TraesCS1A01G174800 chr6B 91.063 649 44 13 3597 4237 354989193 354989835 0.000000e+00 865.0
16 TraesCS1A01G174800 chr2B 92.697 534 30 9 3597 4128 480634217 480634743 0.000000e+00 761.0
17 TraesCS1A01G174800 chr2B 92.509 534 31 8 3597 4128 480626054 480626580 0.000000e+00 756.0
18 TraesCS1A01G174800 chr2B 89.015 264 29 0 160 423 245947960 245948223 1.140000e-85 327.0
19 TraesCS1A01G174800 chr4A 88.436 614 46 23 3595 4194 725000971 725001573 0.000000e+00 717.0
20 TraesCS1A01G174800 chr4A 85.000 80 11 1 39 117 46508193 46508272 3.530000e-11 80.5
21 TraesCS1A01G174800 chr6A 90.189 265 26 0 159 423 326629980 326629716 3.160000e-91 346.0
22 TraesCS1A01G174800 chr6A 89.313 262 26 2 163 423 399204615 399204355 1.140000e-85 327.0
23 TraesCS1A01G174800 chr6A 88.136 118 14 0 1 118 384566732 384566849 1.600000e-29 141.0
24 TraesCS1A01G174800 chr4B 91.016 256 20 2 163 418 94769435 94769183 4.080000e-90 342.0
25 TraesCS1A01G174800 chr7A 88.603 272 30 1 152 423 44210549 44210819 3.180000e-86 329.0
26 TraesCS1A01G174800 chr7A 88.889 135 12 2 4101 4235 322701492 322701623 3.410000e-36 163.0
27 TraesCS1A01G174800 chr7A 88.889 135 12 2 4101 4235 322709682 322709813 3.410000e-36 163.0
28 TraesCS1A01G174800 chr4D 88.603 272 30 1 152 423 479154495 479154225 3.180000e-86 329.0
29 TraesCS1A01G174800 chr3D 89.272 261 27 1 163 423 447584884 447585143 4.110000e-85 326.0
30 TraesCS1A01G174800 chr2A 89.015 264 28 1 160 423 27092414 27092676 4.110000e-85 326.0
31 TraesCS1A01G174800 chr2A 94.017 117 7 0 1 117 446236451 446236567 1.220000e-40 178.0
32 TraesCS1A01G174800 chr3A 92.373 118 8 1 1 118 309426233 309426117 2.640000e-37 167.0
33 TraesCS1A01G174800 chr3A 92.373 118 8 1 1 118 309462080 309461964 2.640000e-37 167.0
34 TraesCS1A01G174800 chr3A 92.793 111 7 1 8 118 309506394 309506285 4.410000e-35 159.0
35 TraesCS1A01G174800 chr3A 88.889 117 13 0 1 117 197643023 197642907 1.240000e-30 145.0
36 TraesCS1A01G174800 chr6D 82.292 96 17 0 23 118 226923606 226923701 2.730000e-12 84.2
37 TraesCS1A01G174800 chr3B 84.706 85 7 4 36 117 613750128 613750209 3.530000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G174800 chr1A 312582634 312586896 4262 False 7873 7873 100.000000 1 4263 1 chr1A.!!$F1 4262
1 TraesCS1A01G174800 chr1A 312602634 312603300 666 False 1216 1216 99.550000 3597 4263 1 chr1A.!!$F3 666
2 TraesCS1A01G174800 chr1A 312594470 312595136 666 False 1188 1188 98.801000 3597 4263 1 chr1A.!!$F2 666
3 TraesCS1A01G174800 chr1B 340464491 340467459 2968 True 4421 4421 93.765000 661 3596 1 chr1B.!!$R1 2935
4 TraesCS1A01G174800 chr1D 234907800 234910802 3002 True 1378 2712 91.790333 116 3596 3 chr1D.!!$R1 3480
5 TraesCS1A01G174800 chrUn 381173813 381174479 666 True 1216 1216 99.550000 3597 4263 1 chrUn.!!$R2 666
6 TraesCS1A01G174800 chr6B 412575830 412576471 641 False 898 898 91.988000 3597 4238 1 chr6B.!!$F3 641
7 TraesCS1A01G174800 chr6B 354997654 354998295 641 False 876 876 91.371000 3597 4238 1 chr6B.!!$F2 641
8 TraesCS1A01G174800 chr6B 354989193 354989835 642 False 865 865 91.063000 3597 4237 1 chr6B.!!$F1 640
9 TraesCS1A01G174800 chr2B 480634217 480634743 526 False 761 761 92.697000 3597 4128 1 chr2B.!!$F3 531
10 TraesCS1A01G174800 chr2B 480626054 480626580 526 False 756 756 92.509000 3597 4128 1 chr2B.!!$F2 531
11 TraesCS1A01G174800 chr4A 725000971 725001573 602 False 717 717 88.436000 3595 4194 1 chr4A.!!$F2 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.032615 AGGAACTGATCGAGGGAGCT 60.033 55.0 0.00 0.0 37.18 4.09 F
614 615 0.108804 GCTCCACGTACTTGCAGCTA 60.109 55.0 7.98 0.0 0.00 3.32 F
1573 1821 0.038166 TCGGCAGATTTCCCTTGCTT 59.962 50.0 0.00 0.0 0.00 3.91 F
1656 1904 0.108898 CAGTCACTTCTCAGGGAGCG 60.109 60.0 0.00 0.0 30.83 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1802 0.038166 AAGCAAGGGAAATCTGCCGA 59.962 50.0 0.00 0.0 38.32 5.54 R
1637 1885 0.108898 CGCTCCCTGAGAAGTGACTG 60.109 60.0 0.00 0.0 0.00 3.51 R
2449 2714 0.394352 CGGAAGCCCTGCTGGTAAAT 60.394 55.0 9.00 0.0 39.62 1.40 R
3544 3827 0.662970 TTCATGCCGTTGCGCTTTTC 60.663 50.0 9.73 0.0 41.78 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.814294 ATCGGACGGCCAAGACGC 62.814 66.667 8.76 0.00 37.73 5.19
20 21 2.975799 GGACGGCCAAGACGCAAA 60.976 61.111 0.00 0.00 37.73 3.68
21 22 2.548295 GGACGGCCAAGACGCAAAA 61.548 57.895 0.00 0.00 37.73 2.44
22 23 1.357334 GACGGCCAAGACGCAAAAA 59.643 52.632 2.24 0.00 37.73 1.94
40 41 2.658807 AAAAGACCTGGTCAACCCTC 57.341 50.000 27.48 0.21 34.60 4.30
41 42 1.518367 AAAGACCTGGTCAACCCTCA 58.482 50.000 27.48 0.00 34.60 3.86
42 43 1.747444 AAGACCTGGTCAACCCTCAT 58.253 50.000 27.48 2.32 34.60 2.90
43 44 1.280457 AGACCTGGTCAACCCTCATC 58.720 55.000 27.48 0.00 34.60 2.92
44 45 0.108138 GACCTGGTCAACCCTCATCG 60.108 60.000 21.70 0.00 34.29 3.84
45 46 0.544357 ACCTGGTCAACCCTCATCGA 60.544 55.000 0.00 0.00 34.29 3.59
46 47 0.613260 CCTGGTCAACCCTCATCGAA 59.387 55.000 0.00 0.00 34.29 3.71
47 48 1.676014 CCTGGTCAACCCTCATCGAAC 60.676 57.143 0.00 0.00 34.29 3.95
48 49 0.037697 TGGTCAACCCTCATCGAACG 60.038 55.000 0.00 0.00 34.29 3.95
49 50 0.739813 GGTCAACCCTCATCGAACGG 60.740 60.000 0.00 0.00 0.00 4.44
50 51 0.739813 GTCAACCCTCATCGAACGGG 60.740 60.000 13.65 13.65 43.79 5.28
51 52 2.106683 CAACCCTCATCGAACGGGC 61.107 63.158 14.80 0.00 41.86 6.13
52 53 2.589157 AACCCTCATCGAACGGGCA 61.589 57.895 14.80 0.00 41.86 5.36
53 54 2.202932 CCCTCATCGAACGGGCAG 60.203 66.667 4.37 0.00 0.00 4.85
54 55 2.892425 CCTCATCGAACGGGCAGC 60.892 66.667 0.00 0.00 0.00 5.25
55 56 3.257561 CTCATCGAACGGGCAGCG 61.258 66.667 0.00 0.00 0.00 5.18
56 57 3.699955 CTCATCGAACGGGCAGCGA 62.700 63.158 0.00 0.00 38.51 4.93
57 58 2.813474 CATCGAACGGGCAGCGAA 60.813 61.111 0.00 0.00 37.60 4.70
58 59 2.509336 ATCGAACGGGCAGCGAAG 60.509 61.111 0.00 0.00 37.60 3.79
59 60 4.735132 TCGAACGGGCAGCGAAGG 62.735 66.667 0.00 0.00 0.00 3.46
60 61 4.735132 CGAACGGGCAGCGAAGGA 62.735 66.667 0.00 0.00 0.00 3.36
61 62 2.358247 GAACGGGCAGCGAAGGAA 60.358 61.111 0.00 0.00 0.00 3.36
62 63 2.668550 AACGGGCAGCGAAGGAAC 60.669 61.111 0.00 0.00 0.00 3.62
64 65 3.121030 CGGGCAGCGAAGGAACTG 61.121 66.667 0.00 0.00 40.86 3.16
65 66 2.347490 GGGCAGCGAAGGAACTGA 59.653 61.111 0.00 0.00 40.86 3.41
66 67 1.078143 GGGCAGCGAAGGAACTGAT 60.078 57.895 0.00 0.00 40.86 2.90
67 68 1.092345 GGGCAGCGAAGGAACTGATC 61.092 60.000 0.00 0.00 40.86 2.92
68 69 1.424493 GGCAGCGAAGGAACTGATCG 61.424 60.000 0.00 0.00 41.14 3.69
69 70 0.458543 GCAGCGAAGGAACTGATCGA 60.459 55.000 0.00 0.00 40.72 3.59
70 71 1.554392 CAGCGAAGGAACTGATCGAG 58.446 55.000 0.00 0.00 40.72 4.04
71 72 0.457851 AGCGAAGGAACTGATCGAGG 59.542 55.000 0.00 0.00 40.72 4.63
72 73 0.528684 GCGAAGGAACTGATCGAGGG 60.529 60.000 0.00 0.00 40.72 4.30
73 74 1.103803 CGAAGGAACTGATCGAGGGA 58.896 55.000 0.00 0.00 40.72 4.20
74 75 1.066303 CGAAGGAACTGATCGAGGGAG 59.934 57.143 0.00 0.00 40.72 4.30
75 76 0.827368 AAGGAACTGATCGAGGGAGC 59.173 55.000 0.00 0.00 40.86 4.70
76 77 0.032615 AGGAACTGATCGAGGGAGCT 60.033 55.000 0.00 0.00 37.18 4.09
77 78 0.387565 GGAACTGATCGAGGGAGCTC 59.612 60.000 4.71 4.71 0.00 4.09
78 79 0.387565 GAACTGATCGAGGGAGCTCC 59.612 60.000 25.59 25.59 0.00 4.70
92 93 2.581354 CTCCCTGGGAGCGAGTTG 59.419 66.667 28.90 5.63 43.29 3.16
93 94 3.003173 TCCCTGGGAGCGAGTTGG 61.003 66.667 12.53 0.00 0.00 3.77
94 95 4.785453 CCCTGGGAGCGAGTTGGC 62.785 72.222 7.01 0.00 0.00 4.52
95 96 4.785453 CCTGGGAGCGAGTTGGCC 62.785 72.222 0.00 0.00 0.00 5.36
96 97 4.020617 CTGGGAGCGAGTTGGCCA 62.021 66.667 0.00 0.00 0.00 5.36
97 98 3.965539 CTGGGAGCGAGTTGGCCAG 62.966 68.421 5.11 0.00 0.00 4.85
99 100 4.704833 GGAGCGAGTTGGCCAGCA 62.705 66.667 22.64 0.00 0.00 4.41
100 101 2.437359 GAGCGAGTTGGCCAGCAT 60.437 61.111 22.64 6.81 0.00 3.79
101 102 2.437359 AGCGAGTTGGCCAGCATC 60.437 61.111 22.64 14.39 0.00 3.91
102 103 2.437359 GCGAGTTGGCCAGCATCT 60.437 61.111 22.64 11.53 0.00 2.90
103 104 1.153369 GCGAGTTGGCCAGCATCTA 60.153 57.895 22.64 0.00 0.00 1.98
104 105 0.533755 GCGAGTTGGCCAGCATCTAT 60.534 55.000 22.64 0.00 0.00 1.98
105 106 1.959042 CGAGTTGGCCAGCATCTATT 58.041 50.000 22.64 0.00 0.00 1.73
106 107 2.292267 CGAGTTGGCCAGCATCTATTT 58.708 47.619 22.64 0.00 0.00 1.40
107 108 2.684881 CGAGTTGGCCAGCATCTATTTT 59.315 45.455 22.64 0.00 0.00 1.82
108 109 3.488047 CGAGTTGGCCAGCATCTATTTTG 60.488 47.826 22.64 0.00 0.00 2.44
109 110 3.434309 AGTTGGCCAGCATCTATTTTGT 58.566 40.909 22.64 0.00 0.00 2.83
110 111 3.834231 AGTTGGCCAGCATCTATTTTGTT 59.166 39.130 22.64 0.00 0.00 2.83
111 112 4.284234 AGTTGGCCAGCATCTATTTTGTTT 59.716 37.500 22.64 0.00 0.00 2.83
112 113 4.888326 TGGCCAGCATCTATTTTGTTTT 57.112 36.364 0.00 0.00 0.00 2.43
113 114 5.991933 TGGCCAGCATCTATTTTGTTTTA 57.008 34.783 0.00 0.00 0.00 1.52
114 115 6.352016 TGGCCAGCATCTATTTTGTTTTAA 57.648 33.333 0.00 0.00 0.00 1.52
165 166 9.662947 ATTTACACTTCAAATGTACCTAGTACC 57.337 33.333 2.63 0.00 38.14 3.34
166 167 6.046290 ACACTTCAAATGTACCTAGTACCC 57.954 41.667 2.63 0.00 38.14 3.69
167 168 5.046087 ACACTTCAAATGTACCTAGTACCCC 60.046 44.000 2.63 0.00 38.14 4.95
168 169 4.472470 ACTTCAAATGTACCTAGTACCCCC 59.528 45.833 2.63 0.00 38.14 5.40
169 170 4.357313 TCAAATGTACCTAGTACCCCCT 57.643 45.455 2.63 0.00 38.14 4.79
170 171 4.292643 TCAAATGTACCTAGTACCCCCTC 58.707 47.826 2.63 0.00 38.14 4.30
171 172 3.341318 AATGTACCTAGTACCCCCTCC 57.659 52.381 2.63 0.00 38.14 4.30
172 173 1.697603 TGTACCTAGTACCCCCTCCA 58.302 55.000 2.63 0.00 38.14 3.86
173 174 2.229523 TGTACCTAGTACCCCCTCCAT 58.770 52.381 2.63 0.00 38.14 3.41
174 175 2.593466 TGTACCTAGTACCCCCTCCATT 59.407 50.000 2.63 0.00 38.14 3.16
175 176 2.984989 ACCTAGTACCCCCTCCATTT 57.015 50.000 0.00 0.00 0.00 2.32
176 177 2.772930 ACCTAGTACCCCCTCCATTTC 58.227 52.381 0.00 0.00 0.00 2.17
177 178 2.321296 ACCTAGTACCCCCTCCATTTCT 59.679 50.000 0.00 0.00 0.00 2.52
178 179 3.246758 ACCTAGTACCCCCTCCATTTCTT 60.247 47.826 0.00 0.00 0.00 2.52
179 180 3.786450 CCTAGTACCCCCTCCATTTCTTT 59.214 47.826 0.00 0.00 0.00 2.52
180 181 4.229812 CCTAGTACCCCCTCCATTTCTTTT 59.770 45.833 0.00 0.00 0.00 2.27
181 182 4.759793 AGTACCCCCTCCATTTCTTTTT 57.240 40.909 0.00 0.00 0.00 1.94
182 183 5.871324 AGTACCCCCTCCATTTCTTTTTA 57.129 39.130 0.00 0.00 0.00 1.52
183 184 5.827756 AGTACCCCCTCCATTTCTTTTTAG 58.172 41.667 0.00 0.00 0.00 1.85
184 185 4.759793 ACCCCCTCCATTTCTTTTTAGT 57.240 40.909 0.00 0.00 0.00 2.24
185 186 4.673968 ACCCCCTCCATTTCTTTTTAGTC 58.326 43.478 0.00 0.00 0.00 2.59
186 187 4.357097 ACCCCCTCCATTTCTTTTTAGTCT 59.643 41.667 0.00 0.00 0.00 3.24
187 188 4.706962 CCCCCTCCATTTCTTTTTAGTCTG 59.293 45.833 0.00 0.00 0.00 3.51
188 189 4.158579 CCCCTCCATTTCTTTTTAGTCTGC 59.841 45.833 0.00 0.00 0.00 4.26
189 190 4.766891 CCCTCCATTTCTTTTTAGTCTGCA 59.233 41.667 0.00 0.00 0.00 4.41
190 191 5.420104 CCCTCCATTTCTTTTTAGTCTGCAT 59.580 40.000 0.00 0.00 0.00 3.96
191 192 6.603201 CCCTCCATTTCTTTTTAGTCTGCATA 59.397 38.462 0.00 0.00 0.00 3.14
192 193 7.286316 CCCTCCATTTCTTTTTAGTCTGCATAT 59.714 37.037 0.00 0.00 0.00 1.78
193 194 9.342308 CCTCCATTTCTTTTTAGTCTGCATATA 57.658 33.333 0.00 0.00 0.00 0.86
204 205 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
205 206 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
206 207 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
207 208 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
208 209 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
209 210 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
210 211 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
211 212 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
212 213 8.461222 TGCATATAAGATTTGGTCAAAGTCAAG 58.539 33.333 2.55 0.00 33.32 3.02
213 214 7.433425 GCATATAAGATTTGGTCAAAGTCAAGC 59.567 37.037 2.55 0.00 33.32 4.01
214 215 6.899393 ATAAGATTTGGTCAAAGTCAAGCA 57.101 33.333 2.55 0.00 33.32 3.91
215 216 5.796424 AAGATTTGGTCAAAGTCAAGCAT 57.204 34.783 2.55 0.00 33.32 3.79
216 217 5.796424 AGATTTGGTCAAAGTCAAGCATT 57.204 34.783 2.55 0.00 33.32 3.56
217 218 5.535333 AGATTTGGTCAAAGTCAAGCATTG 58.465 37.500 2.55 0.00 39.67 2.82
218 219 5.069516 AGATTTGGTCAAAGTCAAGCATTGT 59.930 36.000 2.55 0.00 39.46 2.71
219 220 6.265196 AGATTTGGTCAAAGTCAAGCATTGTA 59.735 34.615 2.55 0.00 39.46 2.41
220 221 6.815089 ATTTGGTCAAAGTCAAGCATTGTAA 58.185 32.000 2.55 0.00 39.46 2.41
221 222 7.271511 ATTTGGTCAAAGTCAAGCATTGTAAA 58.728 30.769 2.55 0.00 39.46 2.01
222 223 7.439056 ATTTGGTCAAAGTCAAGCATTGTAAAG 59.561 33.333 2.55 0.00 39.46 1.85
232 233 4.243007 AGCATTGTAAAGTTTGACCAGC 57.757 40.909 0.00 0.00 0.00 4.85
233 234 3.891366 AGCATTGTAAAGTTTGACCAGCT 59.109 39.130 0.00 0.00 0.00 4.24
234 235 4.342092 AGCATTGTAAAGTTTGACCAGCTT 59.658 37.500 0.00 0.00 0.00 3.74
235 236 5.049828 GCATTGTAAAGTTTGACCAGCTTT 58.950 37.500 0.00 0.00 36.54 3.51
236 237 6.040391 AGCATTGTAAAGTTTGACCAGCTTTA 59.960 34.615 0.00 0.00 34.69 1.85
237 238 6.868339 GCATTGTAAAGTTTGACCAGCTTTAT 59.132 34.615 0.00 0.00 37.15 1.40
238 239 8.026607 GCATTGTAAAGTTTGACCAGCTTTATA 58.973 33.333 0.00 0.00 37.15 0.98
239 240 9.559958 CATTGTAAAGTTTGACCAGCTTTATAG 57.440 33.333 0.00 0.00 37.15 1.31
240 241 8.685838 TTGTAAAGTTTGACCAGCTTTATAGT 57.314 30.769 0.00 0.00 37.15 2.12
241 242 9.781633 TTGTAAAGTTTGACCAGCTTTATAGTA 57.218 29.630 0.00 0.00 37.15 1.82
242 243 9.781633 TGTAAAGTTTGACCAGCTTTATAGTAA 57.218 29.630 0.00 0.00 37.15 2.24
418 419 9.729281 ATATTCAAACTAAAAAGTAACGGAGGA 57.271 29.630 0.00 0.00 0.00 3.71
419 420 7.862512 TTCAAACTAAAAAGTAACGGAGGAA 57.137 32.000 0.00 0.00 0.00 3.36
420 421 7.486802 TCAAACTAAAAAGTAACGGAGGAAG 57.513 36.000 0.00 0.00 0.00 3.46
421 422 7.049754 TCAAACTAAAAAGTAACGGAGGAAGT 58.950 34.615 0.00 0.00 0.00 3.01
422 423 8.203485 TCAAACTAAAAAGTAACGGAGGAAGTA 58.797 33.333 0.00 0.00 0.00 2.24
423 424 8.493547 CAAACTAAAAAGTAACGGAGGAAGTAG 58.506 37.037 0.00 0.00 0.00 2.57
424 425 7.295322 ACTAAAAAGTAACGGAGGAAGTAGT 57.705 36.000 0.00 0.00 0.00 2.73
425 426 8.409358 ACTAAAAAGTAACGGAGGAAGTAGTA 57.591 34.615 0.00 0.00 0.00 1.82
426 427 8.518702 ACTAAAAAGTAACGGAGGAAGTAGTAG 58.481 37.037 0.00 0.00 0.00 2.57
427 428 7.530426 AAAAAGTAACGGAGGAAGTAGTAGA 57.470 36.000 0.00 0.00 0.00 2.59
428 429 7.715266 AAAAGTAACGGAGGAAGTAGTAGAT 57.285 36.000 0.00 0.00 0.00 1.98
485 486 3.665675 AATGGCCGGCTCGTGTCTC 62.666 63.158 28.56 7.32 0.00 3.36
489 490 4.039357 CCGGCTCGTGTCTCGTGT 62.039 66.667 0.00 0.00 40.80 4.49
490 491 2.502080 CGGCTCGTGTCTCGTGTC 60.502 66.667 0.00 0.00 40.80 3.67
491 492 2.126424 GGCTCGTGTCTCGTGTCC 60.126 66.667 0.00 0.00 40.80 4.02
550 551 1.630369 AGACATGCCCTAAGAACAGCA 59.370 47.619 0.00 0.00 40.00 4.41
576 577 2.286365 TTTTGGCACGAGAATTCCCT 57.714 45.000 0.65 0.00 0.00 4.20
578 579 0.984230 TTGGCACGAGAATTCCCTCT 59.016 50.000 0.65 0.00 0.00 3.69
586 587 4.504461 CACGAGAATTCCCTCTACGAAATG 59.496 45.833 0.65 0.00 0.00 2.32
614 615 0.108804 GCTCCACGTACTTGCAGCTA 60.109 55.000 7.98 0.00 0.00 3.32
620 621 2.860735 CACGTACTTGCAGCTAGGAATC 59.139 50.000 8.80 0.00 0.00 2.52
632 633 3.117776 AGCTAGGAATCAACATGGCATGA 60.118 43.478 32.74 13.28 31.04 3.07
639 640 3.029320 TCAACATGGCATGAGTTTTGC 57.971 42.857 32.74 0.00 39.41 3.68
648 649 2.086869 CATGAGTTTTGCCGATGACCT 58.913 47.619 0.00 0.00 0.00 3.85
674 675 0.963962 GTGTCACGAGTACCCTTCCA 59.036 55.000 0.00 0.00 0.00 3.53
720 721 3.998672 TCGCTGGGTTCACGGTCC 61.999 66.667 0.00 0.00 0.00 4.46
919 924 1.376037 CCACGCCCCAAGAGAAGAC 60.376 63.158 0.00 0.00 0.00 3.01
946 951 4.212214 CCGTCAAAAAGAGAGAACTTCAGG 59.788 45.833 0.00 0.00 0.00 3.86
955 960 4.017591 AGAGAGAACTTCAGGAGGAGATCA 60.018 45.833 0.00 0.00 0.00 2.92
956 961 4.280819 AGAGAACTTCAGGAGGAGATCAG 58.719 47.826 0.00 0.00 0.00 2.90
957 962 4.023291 GAGAACTTCAGGAGGAGATCAGT 58.977 47.826 0.00 0.00 0.00 3.41
958 963 5.044476 AGAGAACTTCAGGAGGAGATCAGTA 60.044 44.000 0.00 0.00 0.00 2.74
970 976 0.179134 GATCAGTAGCGCGTGAAGGT 60.179 55.000 8.43 0.00 0.00 3.50
988 995 3.205338 AGGTTTTCATTTTTGCTGTGCC 58.795 40.909 0.00 0.00 0.00 5.01
1101 1108 4.821589 GCCGTCAAGGAGGAGGCG 62.822 72.222 0.00 0.00 45.00 5.52
1148 1158 1.153667 CGGACTCTGAGCAGAAGGC 60.154 63.158 4.19 0.00 45.30 4.35
1158 1168 0.964358 AGCAGAAGGCCAATGCAGAC 60.964 55.000 23.57 0.00 46.50 3.51
1287 1297 0.685458 GCCAATGGCCAAGATGGTCT 60.685 55.000 27.03 1.68 44.07 3.85
1304 1330 3.899726 GGTCTACCAGTAGATGACCAGA 58.100 50.000 10.56 0.00 44.59 3.86
1305 1331 4.475345 GGTCTACCAGTAGATGACCAGAT 58.525 47.826 10.56 0.00 44.59 2.90
1306 1332 4.896482 GGTCTACCAGTAGATGACCAGATT 59.104 45.833 10.56 0.00 44.59 2.40
1307 1333 5.364157 GGTCTACCAGTAGATGACCAGATTT 59.636 44.000 10.56 0.00 44.59 2.17
1308 1334 6.127026 GGTCTACCAGTAGATGACCAGATTTT 60.127 42.308 10.56 0.00 44.59 1.82
1363 1389 2.806945 TTGCCTGGCTGTAATTAGCT 57.193 45.000 21.03 0.00 43.22 3.32
1454 1702 1.809684 TTCTCAGAGAGCGTCGAAGA 58.190 50.000 1.37 0.00 0.00 2.87
1455 1703 1.809684 TCTCAGAGAGCGTCGAAGAA 58.190 50.000 1.37 0.00 39.69 2.52
1456 1704 2.360844 TCTCAGAGAGCGTCGAAGAAT 58.639 47.619 1.37 0.00 39.69 2.40
1457 1705 2.353269 TCTCAGAGAGCGTCGAAGAATC 59.647 50.000 1.37 0.00 39.69 2.52
1458 1706 2.354510 CTCAGAGAGCGTCGAAGAATCT 59.645 50.000 1.37 4.36 39.69 2.40
1459 1707 2.750166 TCAGAGAGCGTCGAAGAATCTT 59.250 45.455 1.37 0.00 39.69 2.40
1460 1708 3.105203 CAGAGAGCGTCGAAGAATCTTC 58.895 50.000 12.74 12.74 39.69 2.87
1461 1709 3.013921 AGAGAGCGTCGAAGAATCTTCT 58.986 45.455 19.40 1.62 39.69 2.85
1462 1710 3.105203 GAGAGCGTCGAAGAATCTTCTG 58.895 50.000 19.40 13.23 39.69 3.02
1463 1711 1.586123 GAGCGTCGAAGAATCTTCTGC 59.414 52.381 19.40 18.53 39.69 4.26
1464 1712 1.203523 AGCGTCGAAGAATCTTCTGCT 59.796 47.619 20.65 20.65 39.69 4.24
1465 1713 1.586123 GCGTCGAAGAATCTTCTGCTC 59.414 52.381 19.40 5.01 39.69 4.26
1466 1714 2.733858 GCGTCGAAGAATCTTCTGCTCT 60.734 50.000 19.40 0.00 39.69 4.09
1467 1715 3.506810 CGTCGAAGAATCTTCTGCTCTT 58.493 45.455 19.40 0.00 39.69 2.85
1468 1716 3.545873 CGTCGAAGAATCTTCTGCTCTTC 59.454 47.826 19.40 0.00 39.69 2.87
1469 1717 3.862845 GTCGAAGAATCTTCTGCTCTTCC 59.137 47.826 19.40 0.00 41.26 3.46
1470 1718 2.857152 CGAAGAATCTTCTGCTCTTCCG 59.143 50.000 19.40 1.48 41.26 4.30
1471 1719 2.977772 AGAATCTTCTGCTCTTCCGG 57.022 50.000 0.00 0.00 35.89 5.14
1472 1720 2.183679 AGAATCTTCTGCTCTTCCGGT 58.816 47.619 0.00 0.00 35.89 5.28
1473 1721 2.569404 AGAATCTTCTGCTCTTCCGGTT 59.431 45.455 0.00 0.00 35.89 4.44
1474 1722 2.393271 ATCTTCTGCTCTTCCGGTTG 57.607 50.000 0.00 0.00 0.00 3.77
1475 1723 0.320771 TCTTCTGCTCTTCCGGTTGC 60.321 55.000 0.00 2.43 0.00 4.17
1476 1724 1.630244 CTTCTGCTCTTCCGGTTGCG 61.630 60.000 0.00 0.00 0.00 4.85
1477 1725 2.357517 CTGCTCTTCCGGTTGCGT 60.358 61.111 0.00 0.00 0.00 5.24
1478 1726 2.664851 TGCTCTTCCGGTTGCGTG 60.665 61.111 0.00 0.00 0.00 5.34
1479 1727 2.665185 GCTCTTCCGGTTGCGTGT 60.665 61.111 0.00 0.00 0.00 4.49
1480 1728 2.954753 GCTCTTCCGGTTGCGTGTG 61.955 63.158 0.00 0.00 0.00 3.82
1481 1729 2.954753 CTCTTCCGGTTGCGTGTGC 61.955 63.158 0.00 0.00 43.20 4.57
1482 1730 2.972505 CTTCCGGTTGCGTGTGCT 60.973 61.111 0.00 0.00 43.34 4.40
1483 1731 3.240606 CTTCCGGTTGCGTGTGCTG 62.241 63.158 0.00 0.00 43.34 4.41
1487 1735 3.898509 GGTTGCGTGTGCTGCCAA 61.899 61.111 0.00 0.00 43.34 4.52
1488 1736 2.336088 GTTGCGTGTGCTGCCAAT 59.664 55.556 0.00 0.00 43.34 3.16
1489 1737 2.017783 GTTGCGTGTGCTGCCAATG 61.018 57.895 0.00 0.00 43.34 2.82
1490 1738 2.192187 TTGCGTGTGCTGCCAATGA 61.192 52.632 0.00 0.00 43.34 2.57
1491 1739 2.126734 GCGTGTGCTGCCAATGAC 60.127 61.111 0.00 0.00 38.39 3.06
1492 1740 2.562912 CGTGTGCTGCCAATGACC 59.437 61.111 0.00 0.00 0.00 4.02
1493 1741 2.260154 CGTGTGCTGCCAATGACCA 61.260 57.895 0.00 0.00 0.00 4.02
1494 1742 1.794151 CGTGTGCTGCCAATGACCAA 61.794 55.000 0.00 0.00 0.00 3.67
1495 1743 0.388659 GTGTGCTGCCAATGACCAAA 59.611 50.000 0.00 0.00 0.00 3.28
1496 1744 1.001181 GTGTGCTGCCAATGACCAAAT 59.999 47.619 0.00 0.00 0.00 2.32
1497 1745 1.001068 TGTGCTGCCAATGACCAAATG 59.999 47.619 0.00 0.00 0.00 2.32
1498 1746 0.609151 TGCTGCCAATGACCAAATGG 59.391 50.000 0.00 0.00 42.17 3.16
1511 1759 3.652057 CCAAATGGTCCATGAGTAGGT 57.348 47.619 4.74 0.00 0.00 3.08
1512 1760 4.771114 CCAAATGGTCCATGAGTAGGTA 57.229 45.455 4.74 0.00 0.00 3.08
1513 1761 4.451900 CCAAATGGTCCATGAGTAGGTAC 58.548 47.826 4.74 0.00 0.00 3.34
1514 1762 4.080582 CCAAATGGTCCATGAGTAGGTACA 60.081 45.833 4.74 0.00 0.00 2.90
1515 1763 5.397899 CCAAATGGTCCATGAGTAGGTACAT 60.398 44.000 4.74 0.00 0.00 2.29
1516 1764 5.552870 AATGGTCCATGAGTAGGTACATC 57.447 43.478 4.74 0.00 0.00 3.06
1517 1765 3.989056 TGGTCCATGAGTAGGTACATCA 58.011 45.455 0.00 0.00 0.00 3.07
1518 1766 3.960755 TGGTCCATGAGTAGGTACATCAG 59.039 47.826 0.00 0.00 0.00 2.90
1519 1767 3.961408 GGTCCATGAGTAGGTACATCAGT 59.039 47.826 0.00 0.00 0.00 3.41
1520 1768 4.202161 GGTCCATGAGTAGGTACATCAGTG 60.202 50.000 0.00 0.00 0.00 3.66
1521 1769 3.960755 TCCATGAGTAGGTACATCAGTGG 59.039 47.826 0.00 4.18 0.00 4.00
1522 1770 3.706594 CCATGAGTAGGTACATCAGTGGT 59.293 47.826 0.00 0.00 0.00 4.16
1523 1771 4.162320 CCATGAGTAGGTACATCAGTGGTT 59.838 45.833 0.00 0.00 0.00 3.67
1524 1772 5.352284 CATGAGTAGGTACATCAGTGGTTC 58.648 45.833 0.00 0.00 0.00 3.62
1525 1773 4.412843 TGAGTAGGTACATCAGTGGTTCA 58.587 43.478 0.00 0.00 0.00 3.18
1526 1774 4.219944 TGAGTAGGTACATCAGTGGTTCAC 59.780 45.833 0.00 0.00 34.10 3.18
1527 1775 4.417437 AGTAGGTACATCAGTGGTTCACT 58.583 43.478 0.00 0.00 46.51 3.41
1528 1776 5.577100 AGTAGGTACATCAGTGGTTCACTA 58.423 41.667 0.00 0.00 43.43 2.74
1529 1777 5.652891 AGTAGGTACATCAGTGGTTCACTAG 59.347 44.000 0.00 0.00 43.43 2.57
1530 1778 4.673968 AGGTACATCAGTGGTTCACTAGA 58.326 43.478 0.00 2.31 43.43 2.43
1531 1779 5.273208 AGGTACATCAGTGGTTCACTAGAT 58.727 41.667 0.00 4.30 43.43 1.98
1532 1780 5.721960 AGGTACATCAGTGGTTCACTAGATT 59.278 40.000 0.00 2.40 43.43 2.40
1533 1781 6.213600 AGGTACATCAGTGGTTCACTAGATTT 59.786 38.462 0.00 3.40 43.43 2.17
1534 1782 6.879458 GGTACATCAGTGGTTCACTAGATTTT 59.121 38.462 0.00 0.78 43.43 1.82
1535 1783 6.808008 ACATCAGTGGTTCACTAGATTTTG 57.192 37.500 0.00 1.10 43.43 2.44
1536 1784 6.299141 ACATCAGTGGTTCACTAGATTTTGT 58.701 36.000 0.00 1.59 43.43 2.83
1537 1785 7.450074 ACATCAGTGGTTCACTAGATTTTGTA 58.550 34.615 0.00 0.00 43.43 2.41
1538 1786 7.604164 ACATCAGTGGTTCACTAGATTTTGTAG 59.396 37.037 0.00 0.00 43.43 2.74
1539 1787 7.062749 TCAGTGGTTCACTAGATTTTGTAGT 57.937 36.000 0.00 0.00 43.43 2.73
1540 1788 7.152645 TCAGTGGTTCACTAGATTTTGTAGTC 58.847 38.462 0.00 0.00 43.43 2.59
1541 1789 6.929049 CAGTGGTTCACTAGATTTTGTAGTCA 59.071 38.462 0.00 0.00 43.43 3.41
1542 1790 6.929606 AGTGGTTCACTAGATTTTGTAGTCAC 59.070 38.462 0.00 0.00 43.46 3.67
1543 1791 6.147328 GTGGTTCACTAGATTTTGTAGTCACC 59.853 42.308 0.00 0.00 34.25 4.02
1544 1792 6.183361 TGGTTCACTAGATTTTGTAGTCACCA 60.183 38.462 0.00 7.71 37.97 4.17
1545 1793 6.147328 GGTTCACTAGATTTTGTAGTCACCAC 59.853 42.308 0.00 0.00 34.03 4.16
1546 1794 6.665992 TCACTAGATTTTGTAGTCACCACT 57.334 37.500 0.00 0.00 36.55 4.00
1547 1795 7.062749 TCACTAGATTTTGTAGTCACCACTT 57.937 36.000 0.00 0.00 33.62 3.16
1548 1796 6.929049 TCACTAGATTTTGTAGTCACCACTTG 59.071 38.462 0.00 0.00 33.62 3.16
1549 1797 5.701290 ACTAGATTTTGTAGTCACCACTTGC 59.299 40.000 0.00 0.00 33.62 4.01
1550 1798 3.821033 AGATTTTGTAGTCACCACTTGCC 59.179 43.478 0.00 0.00 33.62 4.52
1551 1799 1.588674 TTTGTAGTCACCACTTGCCG 58.411 50.000 0.00 0.00 33.62 5.69
1552 1800 0.753867 TTGTAGTCACCACTTGCCGA 59.246 50.000 0.00 0.00 33.62 5.54
1553 1801 0.753867 TGTAGTCACCACTTGCCGAA 59.246 50.000 0.00 0.00 33.62 4.30
1554 1802 1.346395 TGTAGTCACCACTTGCCGAAT 59.654 47.619 0.00 0.00 33.62 3.34
1555 1803 2.000447 GTAGTCACCACTTGCCGAATC 59.000 52.381 0.00 0.00 33.62 2.52
1556 1804 0.670546 AGTCACCACTTGCCGAATCG 60.671 55.000 0.00 0.00 0.00 3.34
1557 1805 4.607722 TAGTCACCACTTGCCGAATCGG 62.608 54.545 18.67 18.67 41.17 4.18
1567 1815 2.321213 CCGAATCGGCAGATTTCCC 58.679 57.895 9.39 0.51 46.30 3.97
1568 1816 0.179045 CCGAATCGGCAGATTTCCCT 60.179 55.000 9.39 0.00 46.30 4.20
1569 1817 1.668419 CGAATCGGCAGATTTCCCTT 58.332 50.000 13.46 0.00 46.30 3.95
1570 1818 1.331756 CGAATCGGCAGATTTCCCTTG 59.668 52.381 13.46 0.00 46.30 3.61
1571 1819 1.066152 GAATCGGCAGATTTCCCTTGC 59.934 52.381 13.46 0.00 46.30 4.01
1572 1820 0.257039 ATCGGCAGATTTCCCTTGCT 59.743 50.000 0.00 0.00 32.03 3.91
1573 1821 0.038166 TCGGCAGATTTCCCTTGCTT 59.962 50.000 0.00 0.00 0.00 3.91
1574 1822 0.171903 CGGCAGATTTCCCTTGCTTG 59.828 55.000 0.00 0.00 0.00 4.01
1575 1823 1.260544 GGCAGATTTCCCTTGCTTGT 58.739 50.000 0.00 0.00 0.00 3.16
1576 1824 2.446435 GGCAGATTTCCCTTGCTTGTA 58.554 47.619 0.00 0.00 0.00 2.41
1577 1825 2.825532 GGCAGATTTCCCTTGCTTGTAA 59.174 45.455 0.00 0.00 0.00 2.41
1578 1826 3.448660 GGCAGATTTCCCTTGCTTGTAAT 59.551 43.478 0.00 0.00 0.00 1.89
1579 1827 4.081476 GGCAGATTTCCCTTGCTTGTAATT 60.081 41.667 0.00 0.00 0.00 1.40
1580 1828 5.482006 GCAGATTTCCCTTGCTTGTAATTT 58.518 37.500 0.00 0.00 0.00 1.82
1581 1829 5.934043 GCAGATTTCCCTTGCTTGTAATTTT 59.066 36.000 0.00 0.00 0.00 1.82
1582 1830 7.096551 GCAGATTTCCCTTGCTTGTAATTTTA 58.903 34.615 0.00 0.00 0.00 1.52
1583 1831 7.602265 GCAGATTTCCCTTGCTTGTAATTTTAA 59.398 33.333 0.00 0.00 0.00 1.52
1584 1832 9.487790 CAGATTTCCCTTGCTTGTAATTTTAAA 57.512 29.630 0.00 0.00 0.00 1.52
1588 1836 7.665561 TCCCTTGCTTGTAATTTTAAAATGC 57.334 32.000 14.04 12.49 0.00 3.56
1589 1837 7.449247 TCCCTTGCTTGTAATTTTAAAATGCT 58.551 30.769 14.04 2.54 0.00 3.79
1590 1838 7.387397 TCCCTTGCTTGTAATTTTAAAATGCTG 59.613 33.333 14.04 9.39 0.00 4.41
1591 1839 7.387397 CCCTTGCTTGTAATTTTAAAATGCTGA 59.613 33.333 14.04 5.73 0.00 4.26
1592 1840 8.437742 CCTTGCTTGTAATTTTAAAATGCTGAG 58.562 33.333 14.04 12.83 0.00 3.35
1593 1841 7.350110 TGCTTGTAATTTTAAAATGCTGAGC 57.650 32.000 14.04 18.49 0.00 4.26
1594 1842 6.368516 TGCTTGTAATTTTAAAATGCTGAGCC 59.631 34.615 22.90 13.47 0.00 4.70
1595 1843 6.368516 GCTTGTAATTTTAAAATGCTGAGCCA 59.631 34.615 14.04 1.89 0.00 4.75
1596 1844 7.064966 GCTTGTAATTTTAAAATGCTGAGCCAT 59.935 33.333 14.04 0.00 0.00 4.40
1597 1845 8.845413 TTGTAATTTTAAAATGCTGAGCCATT 57.155 26.923 14.04 0.00 37.03 3.16
1598 1846 8.845413 TGTAATTTTAAAATGCTGAGCCATTT 57.155 26.923 14.04 5.89 44.81 2.32
1599 1847 8.719648 TGTAATTTTAAAATGCTGAGCCATTTG 58.280 29.630 14.04 0.00 42.78 2.32
1600 1848 7.982761 AATTTTAAAATGCTGAGCCATTTGA 57.017 28.000 14.04 5.42 42.78 2.69
1601 1849 6.783892 TTTTAAAATGCTGAGCCATTTGAC 57.216 33.333 12.86 0.00 42.78 3.18
1602 1850 5.465532 TTAAAATGCTGAGCCATTTGACA 57.534 34.783 12.86 2.82 42.78 3.58
1603 1851 4.339872 AAAATGCTGAGCCATTTGACAA 57.660 36.364 0.23 0.00 42.78 3.18
1604 1852 4.339872 AAATGCTGAGCCATTTGACAAA 57.660 36.364 0.23 2.48 42.20 2.83
1605 1853 4.339872 AATGCTGAGCCATTTGACAAAA 57.660 36.364 4.41 0.00 31.67 2.44
1606 1854 3.374220 TGCTGAGCCATTTGACAAAAG 57.626 42.857 4.41 0.00 0.00 2.27
1607 1855 2.036217 TGCTGAGCCATTTGACAAAAGG 59.964 45.455 16.21 16.21 0.00 3.11
1608 1856 2.036346 GCTGAGCCATTTGACAAAAGGT 59.964 45.455 20.24 13.18 0.00 3.50
1609 1857 3.493176 GCTGAGCCATTTGACAAAAGGTT 60.493 43.478 20.24 15.86 0.00 3.50
1610 1858 4.301628 CTGAGCCATTTGACAAAAGGTTC 58.698 43.478 24.03 24.03 31.07 3.62
1611 1859 3.703556 TGAGCCATTTGACAAAAGGTTCA 59.296 39.130 27.50 27.50 34.56 3.18
1612 1860 4.202141 TGAGCCATTTGACAAAAGGTTCAG 60.202 41.667 27.50 5.21 33.35 3.02
1613 1861 3.706086 AGCCATTTGACAAAAGGTTCAGT 59.294 39.130 20.24 2.02 0.00 3.41
1614 1862 4.162131 AGCCATTTGACAAAAGGTTCAGTT 59.838 37.500 20.24 1.51 0.00 3.16
1615 1863 4.507756 GCCATTTGACAAAAGGTTCAGTTC 59.492 41.667 20.24 2.01 0.00 3.01
1616 1864 5.659463 CCATTTGACAAAAGGTTCAGTTCA 58.341 37.500 13.00 0.00 0.00 3.18
1617 1865 5.519927 CCATTTGACAAAAGGTTCAGTTCAC 59.480 40.000 13.00 0.00 0.00 3.18
1618 1866 5.975693 TTTGACAAAAGGTTCAGTTCACT 57.024 34.783 0.00 0.00 0.00 3.41
1619 1867 5.975693 TTGACAAAAGGTTCAGTTCACTT 57.024 34.783 0.00 0.00 0.00 3.16
1620 1868 5.560966 TGACAAAAGGTTCAGTTCACTTC 57.439 39.130 0.00 0.00 0.00 3.01
1621 1869 5.007034 TGACAAAAGGTTCAGTTCACTTCA 58.993 37.500 0.00 0.00 0.00 3.02
1622 1870 5.123820 TGACAAAAGGTTCAGTTCACTTCAG 59.876 40.000 0.00 0.00 0.00 3.02
1623 1871 4.399303 ACAAAAGGTTCAGTTCACTTCAGG 59.601 41.667 0.00 0.00 0.00 3.86
1624 1872 2.938956 AGGTTCAGTTCACTTCAGGG 57.061 50.000 0.00 0.00 0.00 4.45
1625 1873 2.127708 AGGTTCAGTTCACTTCAGGGT 58.872 47.619 0.00 0.00 0.00 4.34
1626 1874 2.158755 AGGTTCAGTTCACTTCAGGGTG 60.159 50.000 0.00 0.00 38.44 4.61
1627 1875 2.158813 GGTTCAGTTCACTTCAGGGTGA 60.159 50.000 0.00 0.00 43.41 4.02
1634 1882 4.503714 TTCACTTCAGGGTGAACTTCTT 57.496 40.909 6.03 0.00 46.91 2.52
1635 1883 4.503714 TCACTTCAGGGTGAACTTCTTT 57.496 40.909 0.00 0.00 42.35 2.52
1636 1884 4.199310 TCACTTCAGGGTGAACTTCTTTG 58.801 43.478 0.00 0.00 42.35 2.77
1637 1885 2.952310 ACTTCAGGGTGAACTTCTTTGC 59.048 45.455 0.00 0.00 32.21 3.68
1638 1886 2.727123 TCAGGGTGAACTTCTTTGCA 57.273 45.000 0.00 0.00 0.00 4.08
1639 1887 2.575532 TCAGGGTGAACTTCTTTGCAG 58.424 47.619 0.00 0.00 0.00 4.41
1640 1888 2.092429 TCAGGGTGAACTTCTTTGCAGT 60.092 45.455 0.00 0.00 0.00 4.40
1641 1889 2.291741 CAGGGTGAACTTCTTTGCAGTC 59.708 50.000 0.00 0.00 0.00 3.51
1642 1890 2.092429 AGGGTGAACTTCTTTGCAGTCA 60.092 45.455 0.00 0.00 0.00 3.41
1643 1891 2.033424 GGGTGAACTTCTTTGCAGTCAC 59.967 50.000 0.00 0.00 0.00 3.67
1644 1892 2.945668 GGTGAACTTCTTTGCAGTCACT 59.054 45.455 0.00 0.00 0.00 3.41
1645 1893 3.378427 GGTGAACTTCTTTGCAGTCACTT 59.622 43.478 0.00 0.00 0.00 3.16
1646 1894 4.496507 GGTGAACTTCTTTGCAGTCACTTC 60.497 45.833 0.00 0.00 0.00 3.01
1647 1895 4.333926 GTGAACTTCTTTGCAGTCACTTCT 59.666 41.667 0.00 0.00 0.00 2.85
1648 1896 4.572389 TGAACTTCTTTGCAGTCACTTCTC 59.428 41.667 0.00 0.00 0.00 2.87
1649 1897 4.142609 ACTTCTTTGCAGTCACTTCTCA 57.857 40.909 0.00 0.00 0.00 3.27
1650 1898 4.125703 ACTTCTTTGCAGTCACTTCTCAG 58.874 43.478 0.00 0.00 0.00 3.35
1651 1899 3.117491 TCTTTGCAGTCACTTCTCAGG 57.883 47.619 0.00 0.00 0.00 3.86
1652 1900 2.149578 CTTTGCAGTCACTTCTCAGGG 58.850 52.381 0.00 0.00 0.00 4.45
1653 1901 1.423584 TTGCAGTCACTTCTCAGGGA 58.576 50.000 0.00 0.00 0.00 4.20
1654 1902 0.972134 TGCAGTCACTTCTCAGGGAG 59.028 55.000 0.00 0.00 30.83 4.30
1655 1903 0.390998 GCAGTCACTTCTCAGGGAGC 60.391 60.000 0.00 0.00 30.83 4.70
1656 1904 0.108898 CAGTCACTTCTCAGGGAGCG 60.109 60.000 0.00 0.00 30.83 5.03
1657 1905 0.540830 AGTCACTTCTCAGGGAGCGT 60.541 55.000 0.00 0.00 30.83 5.07
1658 1906 0.109039 GTCACTTCTCAGGGAGCGTC 60.109 60.000 0.00 0.00 30.83 5.19
1659 1907 1.153939 CACTTCTCAGGGAGCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
1660 1908 1.303398 ACTTCTCAGGGAGCGTCGA 60.303 57.895 0.00 0.00 0.00 4.20
1661 1909 0.894184 ACTTCTCAGGGAGCGTCGAA 60.894 55.000 0.00 0.00 0.00 3.71
1662 1910 0.179150 CTTCTCAGGGAGCGTCGAAG 60.179 60.000 0.00 0.00 0.00 3.79
1671 1919 1.135333 GGAGCGTCGAAGGATCTTCTT 59.865 52.381 0.00 0.00 0.00 2.52
1703 1951 3.709653 TCACCCAACCCACATCTATCTAC 59.290 47.826 0.00 0.00 0.00 2.59
1815 2071 5.992217 ACTCTTGGTAAACTAGACAGCAAAG 59.008 40.000 0.00 6.27 0.00 2.77
1822 2078 7.386848 TGGTAAACTAGACAGCAAAGTTACATC 59.613 37.037 0.00 0.00 33.24 3.06
1829 2085 1.349688 AGCAAAGTTACATCCGGTGGA 59.650 47.619 0.00 0.00 35.55 4.02
1835 2091 3.309296 AGTTACATCCGGTGGATCTGAT 58.691 45.455 0.00 0.00 40.98 2.90
1845 2107 3.616076 CGGTGGATCTGATCTAGATTGCC 60.616 52.174 16.61 7.42 46.12 4.52
1880 2142 6.292865 GCAAAAGAAGTGGAAAAGTTATTGCC 60.293 38.462 0.00 0.00 33.48 4.52
1887 2149 6.775708 AGTGGAAAAGTTATTGCCTGTACTA 58.224 36.000 0.00 0.00 0.00 1.82
1927 2189 2.306847 ACAAAATTGAGCAGACCGGTT 58.693 42.857 9.42 0.00 0.00 4.44
1933 2195 1.448013 GAGCAGACCGGTTAGGCAC 60.448 63.158 22.61 15.34 46.52 5.01
1936 2198 1.972198 CAGACCGGTTAGGCACTGA 59.028 57.895 9.42 0.00 44.68 3.41
1965 2227 6.367374 TGGTACATGAGTAGATTTTGTGGA 57.633 37.500 0.00 0.00 0.00 4.02
2056 2318 0.965439 TGATTGGGCAAAAGGTTCGG 59.035 50.000 0.00 0.00 0.00 4.30
2089 2352 5.957842 AATTCTCTGCGGTCATTTTACAA 57.042 34.783 0.00 0.00 0.00 2.41
2249 2512 5.084818 TGCAATTCTGAATCGGAACTAGA 57.915 39.130 6.67 0.00 31.12 2.43
2314 2578 8.407832 CCTGTGCTTCAAATATACAAATGATGA 58.592 33.333 0.00 0.00 0.00 2.92
2413 2678 0.984829 CAGTGACATACAGCACGACG 59.015 55.000 0.00 0.00 39.88 5.12
2446 2711 4.836736 AGTAGTAAGACAACAAGGGCAGTA 59.163 41.667 0.00 0.00 0.00 2.74
2449 2714 5.442391 AGTAAGACAACAAGGGCAGTAAAA 58.558 37.500 0.00 0.00 0.00 1.52
2505 2770 2.391389 CCGCGGTCTGAAGGAAAGC 61.391 63.158 19.50 0.00 0.00 3.51
2757 3026 7.789273 TTATATACCACAAACATAACCACCG 57.211 36.000 0.00 0.00 0.00 4.94
2785 3054 5.794894 TGAAGAAGAATAACCACTGGAGAC 58.205 41.667 0.71 0.00 0.00 3.36
2908 3177 4.955811 ATCGCCAATCTATAGGTGTGAA 57.044 40.909 0.00 0.00 36.77 3.18
2968 3237 9.466497 AATATACTTGCATAATTGATACCCCAG 57.534 33.333 0.00 0.00 0.00 4.45
2970 3239 6.260700 ACTTGCATAATTGATACCCCAGTA 57.739 37.500 0.00 0.00 0.00 2.74
3104 3373 2.102420 TCATGTCAAACACCGTGAGAGT 59.898 45.455 5.28 0.00 0.00 3.24
3107 3376 2.093921 TGTCAAACACCGTGAGAGTTCA 60.094 45.455 5.28 0.00 0.00 3.18
3380 3662 7.373778 ACTACGGTTATTCAAATTCCAAGAC 57.626 36.000 0.00 0.00 0.00 3.01
3517 3800 6.329496 TCCACTTTCATTGTGAAACTTGAAC 58.671 36.000 1.24 0.00 41.02 3.18
3523 3806 0.027455 TGTGAAACTTGAACGCAGCG 59.973 50.000 14.82 14.82 38.04 5.18
3528 3811 3.930229 TGAAACTTGAACGCAGCGTATAT 59.070 39.130 23.30 5.38 39.99 0.86
3544 3827 1.267121 ATATCCCGAACGATCCCAGG 58.733 55.000 0.00 0.00 0.00 4.45
3578 3861 3.703052 GGCATGAAGAATCAAATGGACCT 59.297 43.478 0.00 0.00 39.49 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.814294 GCGTCTTGGCCGTCCGAT 62.814 66.667 0.00 0.00 34.14 4.18
3 4 2.065906 TTTTTGCGTCTTGGCCGTCC 62.066 55.000 0.00 0.00 0.00 4.79
4 5 1.357334 TTTTTGCGTCTTGGCCGTC 59.643 52.632 0.00 0.00 0.00 4.79
5 6 3.515611 TTTTTGCGTCTTGGCCGT 58.484 50.000 0.00 0.00 0.00 5.68
20 21 2.243736 TGAGGGTTGACCAGGTCTTTTT 59.756 45.455 20.82 2.76 43.89 1.94
21 22 1.850345 TGAGGGTTGACCAGGTCTTTT 59.150 47.619 20.82 2.05 43.89 2.27
22 23 1.518367 TGAGGGTTGACCAGGTCTTT 58.482 50.000 20.82 1.69 43.89 2.52
23 24 1.630878 GATGAGGGTTGACCAGGTCTT 59.369 52.381 20.82 1.34 43.89 3.01
24 25 1.280457 GATGAGGGTTGACCAGGTCT 58.720 55.000 20.82 0.00 43.89 3.85
25 26 0.108138 CGATGAGGGTTGACCAGGTC 60.108 60.000 13.35 13.35 43.89 3.85
26 27 0.544357 TCGATGAGGGTTGACCAGGT 60.544 55.000 0.00 0.00 43.89 4.00
27 28 0.613260 TTCGATGAGGGTTGACCAGG 59.387 55.000 2.12 0.00 43.89 4.45
28 29 1.726853 GTTCGATGAGGGTTGACCAG 58.273 55.000 2.12 0.00 43.89 4.00
29 30 0.037697 CGTTCGATGAGGGTTGACCA 60.038 55.000 2.12 0.00 43.89 4.02
30 31 0.739813 CCGTTCGATGAGGGTTGACC 60.740 60.000 0.00 0.00 40.67 4.02
31 32 0.739813 CCCGTTCGATGAGGGTTGAC 60.740 60.000 11.06 0.00 40.27 3.18
32 33 1.594833 CCCGTTCGATGAGGGTTGA 59.405 57.895 11.06 0.00 40.27 3.18
33 34 2.106683 GCCCGTTCGATGAGGGTTG 61.107 63.158 17.96 0.00 46.69 3.77
34 35 2.267961 GCCCGTTCGATGAGGGTT 59.732 61.111 17.96 0.00 46.69 4.11
35 36 3.000819 TGCCCGTTCGATGAGGGT 61.001 61.111 17.96 0.00 46.69 4.34
37 38 2.892425 GCTGCCCGTTCGATGAGG 60.892 66.667 0.00 0.00 0.00 3.86
38 39 3.257561 CGCTGCCCGTTCGATGAG 61.258 66.667 0.00 0.00 0.00 2.90
39 40 3.289704 TTCGCTGCCCGTTCGATGA 62.290 57.895 0.00 0.00 38.35 2.92
40 41 2.802667 CTTCGCTGCCCGTTCGATG 61.803 63.158 0.00 0.00 38.35 3.84
41 42 2.509336 CTTCGCTGCCCGTTCGAT 60.509 61.111 0.00 0.00 38.35 3.59
42 43 4.735132 CCTTCGCTGCCCGTTCGA 62.735 66.667 0.00 0.00 38.35 3.71
43 44 4.735132 TCCTTCGCTGCCCGTTCG 62.735 66.667 0.00 0.00 38.35 3.95
44 45 2.358247 TTCCTTCGCTGCCCGTTC 60.358 61.111 0.00 0.00 38.35 3.95
45 46 2.668550 GTTCCTTCGCTGCCCGTT 60.669 61.111 0.00 0.00 38.35 4.44
46 47 3.626924 AGTTCCTTCGCTGCCCGT 61.627 61.111 0.00 0.00 38.35 5.28
47 48 2.859273 ATCAGTTCCTTCGCTGCCCG 62.859 60.000 0.00 0.00 38.61 6.13
48 49 1.078143 ATCAGTTCCTTCGCTGCCC 60.078 57.895 0.00 0.00 33.09 5.36
49 50 1.424493 CGATCAGTTCCTTCGCTGCC 61.424 60.000 0.00 0.00 33.09 4.85
50 51 0.458543 TCGATCAGTTCCTTCGCTGC 60.459 55.000 0.00 0.00 33.08 5.25
51 52 1.554392 CTCGATCAGTTCCTTCGCTG 58.446 55.000 0.00 0.00 33.08 5.18
52 53 0.457851 CCTCGATCAGTTCCTTCGCT 59.542 55.000 0.00 0.00 33.08 4.93
53 54 0.528684 CCCTCGATCAGTTCCTTCGC 60.529 60.000 0.00 0.00 33.08 4.70
54 55 1.066303 CTCCCTCGATCAGTTCCTTCG 59.934 57.143 0.00 0.00 0.00 3.79
55 56 1.202475 GCTCCCTCGATCAGTTCCTTC 60.202 57.143 0.00 0.00 0.00 3.46
56 57 0.827368 GCTCCCTCGATCAGTTCCTT 59.173 55.000 0.00 0.00 0.00 3.36
57 58 0.032615 AGCTCCCTCGATCAGTTCCT 60.033 55.000 0.00 0.00 0.00 3.36
58 59 0.387565 GAGCTCCCTCGATCAGTTCC 59.612 60.000 0.87 0.00 0.00 3.62
59 60 0.387565 GGAGCTCCCTCGATCAGTTC 59.612 60.000 23.19 0.00 39.06 3.01
60 61 2.510664 GGAGCTCCCTCGATCAGTT 58.489 57.895 23.19 0.00 39.06 3.16
61 62 4.268720 GGAGCTCCCTCGATCAGT 57.731 61.111 23.19 0.00 39.06 3.41
76 77 3.003173 CCAACTCGCTCCCAGGGA 61.003 66.667 8.35 8.35 35.75 4.20
77 78 4.785453 GCCAACTCGCTCCCAGGG 62.785 72.222 0.00 0.00 0.00 4.45
78 79 4.785453 GGCCAACTCGCTCCCAGG 62.785 72.222 0.00 0.00 0.00 4.45
79 80 3.965539 CTGGCCAACTCGCTCCCAG 62.966 68.421 7.01 0.00 37.35 4.45
80 81 4.020617 CTGGCCAACTCGCTCCCA 62.021 66.667 7.01 0.00 0.00 4.37
82 83 3.984193 ATGCTGGCCAACTCGCTCC 62.984 63.158 7.01 0.00 0.00 4.70
83 84 2.437359 ATGCTGGCCAACTCGCTC 60.437 61.111 7.01 0.00 0.00 5.03
84 85 1.617018 TAGATGCTGGCCAACTCGCT 61.617 55.000 7.01 4.09 0.00 4.93
85 86 0.533755 ATAGATGCTGGCCAACTCGC 60.534 55.000 7.01 7.43 0.00 5.03
86 87 1.959042 AATAGATGCTGGCCAACTCG 58.041 50.000 7.01 0.00 0.00 4.18
87 88 3.445096 ACAAAATAGATGCTGGCCAACTC 59.555 43.478 7.01 3.62 0.00 3.01
88 89 3.434309 ACAAAATAGATGCTGGCCAACT 58.566 40.909 7.01 6.77 0.00 3.16
89 90 3.874392 ACAAAATAGATGCTGGCCAAC 57.126 42.857 7.01 1.82 0.00 3.77
90 91 4.888326 AAACAAAATAGATGCTGGCCAA 57.112 36.364 7.01 0.00 0.00 4.52
91 92 4.888326 AAAACAAAATAGATGCTGGCCA 57.112 36.364 4.71 4.71 0.00 5.36
92 93 7.848223 ATTTAAAACAAAATAGATGCTGGCC 57.152 32.000 0.00 0.00 0.00 5.36
153 154 1.697603 TGGAGGGGGTACTAGGTACA 58.302 55.000 9.56 0.00 40.41 2.90
154 155 3.341318 AATGGAGGGGGTACTAGGTAC 57.659 52.381 0.00 0.00 38.19 3.34
155 156 3.538980 AGAAATGGAGGGGGTACTAGGTA 59.461 47.826 0.00 0.00 0.00 3.08
156 157 2.321296 AGAAATGGAGGGGGTACTAGGT 59.679 50.000 0.00 0.00 0.00 3.08
157 158 3.061909 AGAAATGGAGGGGGTACTAGG 57.938 52.381 0.00 0.00 0.00 3.02
158 159 5.452341 AAAAGAAATGGAGGGGGTACTAG 57.548 43.478 0.00 0.00 0.00 2.57
159 160 5.871324 AAAAAGAAATGGAGGGGGTACTA 57.129 39.130 0.00 0.00 0.00 1.82
160 161 4.759793 AAAAAGAAATGGAGGGGGTACT 57.240 40.909 0.00 0.00 0.00 2.73
161 162 5.577100 ACTAAAAAGAAATGGAGGGGGTAC 58.423 41.667 0.00 0.00 0.00 3.34
162 163 5.554350 AGACTAAAAAGAAATGGAGGGGGTA 59.446 40.000 0.00 0.00 0.00 3.69
163 164 4.357097 AGACTAAAAAGAAATGGAGGGGGT 59.643 41.667 0.00 0.00 0.00 4.95
164 165 4.706962 CAGACTAAAAAGAAATGGAGGGGG 59.293 45.833 0.00 0.00 0.00 5.40
165 166 4.158579 GCAGACTAAAAAGAAATGGAGGGG 59.841 45.833 0.00 0.00 0.00 4.79
166 167 4.766891 TGCAGACTAAAAAGAAATGGAGGG 59.233 41.667 0.00 0.00 0.00 4.30
167 168 5.964958 TGCAGACTAAAAAGAAATGGAGG 57.035 39.130 0.00 0.00 0.00 4.30
178 179 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
179 180 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
180 181 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
181 182 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
182 183 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
183 184 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
184 185 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
185 186 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
186 187 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
187 188 7.433425 GCTTGACTTTGACCAAATCTTATATGC 59.567 37.037 0.00 0.00 0.00 3.14
188 189 8.461222 TGCTTGACTTTGACCAAATCTTATATG 58.539 33.333 0.00 0.00 0.00 1.78
189 190 8.579850 TGCTTGACTTTGACCAAATCTTATAT 57.420 30.769 0.00 0.00 0.00 0.86
190 191 7.994425 TGCTTGACTTTGACCAAATCTTATA 57.006 32.000 0.00 0.00 0.00 0.98
191 192 6.899393 TGCTTGACTTTGACCAAATCTTAT 57.101 33.333 0.00 0.00 0.00 1.73
192 193 6.899393 ATGCTTGACTTTGACCAAATCTTA 57.101 33.333 0.00 0.00 0.00 2.10
193 194 5.796424 ATGCTTGACTTTGACCAAATCTT 57.204 34.783 0.00 0.00 0.00 2.40
194 195 5.069516 ACAATGCTTGACTTTGACCAAATCT 59.930 36.000 3.37 0.00 36.99 2.40
195 196 5.291971 ACAATGCTTGACTTTGACCAAATC 58.708 37.500 3.37 0.00 36.99 2.17
196 197 5.280654 ACAATGCTTGACTTTGACCAAAT 57.719 34.783 3.37 0.00 36.99 2.32
197 198 4.734398 ACAATGCTTGACTTTGACCAAA 57.266 36.364 3.37 0.00 36.99 3.28
198 199 5.843673 TTACAATGCTTGACTTTGACCAA 57.156 34.783 3.37 0.00 36.99 3.67
199 200 5.359576 ACTTTACAATGCTTGACTTTGACCA 59.640 36.000 3.37 0.00 36.99 4.02
200 201 5.831997 ACTTTACAATGCTTGACTTTGACC 58.168 37.500 3.37 0.00 36.99 4.02
201 202 7.487829 TCAAACTTTACAATGCTTGACTTTGAC 59.512 33.333 3.37 0.00 36.99 3.18
202 203 7.487829 GTCAAACTTTACAATGCTTGACTTTGA 59.512 33.333 12.98 0.00 36.77 2.69
203 204 7.254084 GGTCAAACTTTACAATGCTTGACTTTG 60.254 37.037 16.87 0.00 38.32 2.77
204 205 6.756542 GGTCAAACTTTACAATGCTTGACTTT 59.243 34.615 16.87 0.00 38.32 2.66
205 206 6.127479 TGGTCAAACTTTACAATGCTTGACTT 60.127 34.615 16.87 0.00 38.32 3.01
206 207 5.359576 TGGTCAAACTTTACAATGCTTGACT 59.640 36.000 16.87 0.00 38.32 3.41
207 208 5.587289 TGGTCAAACTTTACAATGCTTGAC 58.413 37.500 12.30 12.30 37.92 3.18
208 209 5.735922 GCTGGTCAAACTTTACAATGCTTGA 60.736 40.000 3.37 0.00 0.00 3.02
209 210 4.445385 GCTGGTCAAACTTTACAATGCTTG 59.555 41.667 0.00 0.00 0.00 4.01
210 211 4.342092 AGCTGGTCAAACTTTACAATGCTT 59.658 37.500 0.00 0.00 0.00 3.91
211 212 3.891366 AGCTGGTCAAACTTTACAATGCT 59.109 39.130 0.00 0.00 0.00 3.79
212 213 4.243007 AGCTGGTCAAACTTTACAATGC 57.757 40.909 0.00 0.00 0.00 3.56
213 214 9.559958 CTATAAAGCTGGTCAAACTTTACAATG 57.440 33.333 0.00 0.00 38.36 2.82
214 215 9.297037 ACTATAAAGCTGGTCAAACTTTACAAT 57.703 29.630 0.00 0.00 38.36 2.71
215 216 8.685838 ACTATAAAGCTGGTCAAACTTTACAA 57.314 30.769 0.00 0.00 38.36 2.41
216 217 9.781633 TTACTATAAAGCTGGTCAAACTTTACA 57.218 29.630 0.00 0.00 38.36 2.41
275 276 9.755804 TGCATGATAAATTTAACTTTCACAACA 57.244 25.926 1.21 0.00 0.00 3.33
392 393 9.729281 TCCTCCGTTACTTTTTAGTTTGAATAT 57.271 29.630 0.00 0.00 0.00 1.28
393 394 9.558396 TTCCTCCGTTACTTTTTAGTTTGAATA 57.442 29.630 0.00 0.00 0.00 1.75
394 395 8.454570 TTCCTCCGTTACTTTTTAGTTTGAAT 57.545 30.769 0.00 0.00 0.00 2.57
395 396 7.553760 ACTTCCTCCGTTACTTTTTAGTTTGAA 59.446 33.333 0.00 0.00 0.00 2.69
396 397 7.049754 ACTTCCTCCGTTACTTTTTAGTTTGA 58.950 34.615 0.00 0.00 0.00 2.69
397 398 7.255491 ACTTCCTCCGTTACTTTTTAGTTTG 57.745 36.000 0.00 0.00 0.00 2.93
398 399 8.206867 ACTACTTCCTCCGTTACTTTTTAGTTT 58.793 33.333 0.00 0.00 0.00 2.66
399 400 7.730084 ACTACTTCCTCCGTTACTTTTTAGTT 58.270 34.615 0.00 0.00 0.00 2.24
400 401 7.295322 ACTACTTCCTCCGTTACTTTTTAGT 57.705 36.000 0.00 0.00 0.00 2.24
401 402 8.734386 TCTACTACTTCCTCCGTTACTTTTTAG 58.266 37.037 0.00 0.00 0.00 1.85
402 403 8.635765 TCTACTACTTCCTCCGTTACTTTTTA 57.364 34.615 0.00 0.00 0.00 1.52
403 404 7.530426 TCTACTACTTCCTCCGTTACTTTTT 57.470 36.000 0.00 0.00 0.00 1.94
404 405 7.363617 CCATCTACTACTTCCTCCGTTACTTTT 60.364 40.741 0.00 0.00 0.00 2.27
405 406 6.096564 CCATCTACTACTTCCTCCGTTACTTT 59.903 42.308 0.00 0.00 0.00 2.66
406 407 5.593502 CCATCTACTACTTCCTCCGTTACTT 59.406 44.000 0.00 0.00 0.00 2.24
407 408 5.131784 CCATCTACTACTTCCTCCGTTACT 58.868 45.833 0.00 0.00 0.00 2.24
408 409 4.277921 CCCATCTACTACTTCCTCCGTTAC 59.722 50.000 0.00 0.00 0.00 2.50
409 410 4.467769 CCCATCTACTACTTCCTCCGTTA 58.532 47.826 0.00 0.00 0.00 3.18
410 411 3.297736 CCCATCTACTACTTCCTCCGTT 58.702 50.000 0.00 0.00 0.00 4.44
411 412 2.946785 CCCATCTACTACTTCCTCCGT 58.053 52.381 0.00 0.00 0.00 4.69
412 413 1.614413 GCCCATCTACTACTTCCTCCG 59.386 57.143 0.00 0.00 0.00 4.63
413 414 1.972075 GGCCCATCTACTACTTCCTCC 59.028 57.143 0.00 0.00 0.00 4.30
414 415 2.630580 CTGGCCCATCTACTACTTCCTC 59.369 54.545 0.00 0.00 0.00 3.71
415 416 2.683768 CTGGCCCATCTACTACTTCCT 58.316 52.381 0.00 0.00 0.00 3.36
416 417 1.694696 CCTGGCCCATCTACTACTTCC 59.305 57.143 0.00 0.00 0.00 3.46
417 418 1.070914 GCCTGGCCCATCTACTACTTC 59.929 57.143 7.66 0.00 0.00 3.01
418 419 1.132500 GCCTGGCCCATCTACTACTT 58.868 55.000 7.66 0.00 0.00 2.24
419 420 0.266152 AGCCTGGCCCATCTACTACT 59.734 55.000 16.57 0.00 0.00 2.57
420 421 1.132500 AAGCCTGGCCCATCTACTAC 58.868 55.000 16.57 0.00 0.00 2.73
421 422 1.131638 CAAGCCTGGCCCATCTACTA 58.868 55.000 16.57 0.00 0.00 1.82
422 423 1.639635 CCAAGCCTGGCCCATCTACT 61.640 60.000 16.57 0.00 35.39 2.57
423 424 1.152881 CCAAGCCTGGCCCATCTAC 60.153 63.158 16.57 0.00 35.39 2.59
424 425 2.386100 CCCAAGCCTGGCCCATCTA 61.386 63.158 16.57 0.00 41.99 1.98
425 426 3.747579 CCCAAGCCTGGCCCATCT 61.748 66.667 16.57 0.00 41.99 2.90
426 427 3.743017 TCCCAAGCCTGGCCCATC 61.743 66.667 16.57 0.00 41.99 3.51
427 428 4.066139 GTCCCAAGCCTGGCCCAT 62.066 66.667 16.57 0.00 41.99 4.00
502 503 0.655733 AAAACAGACTCGTTGTGCGG 59.344 50.000 0.00 0.00 41.72 5.69
505 506 2.348218 GCCGTAAAACAGACTCGTTGTG 60.348 50.000 0.00 0.00 0.00 3.33
550 551 1.745232 TCTCGTGCCAAAAACAGTGT 58.255 45.000 0.00 0.00 0.00 3.55
561 562 1.536284 CGTAGAGGGAATTCTCGTGCC 60.536 57.143 5.23 0.00 38.71 5.01
576 577 0.874175 CCATCCGCGCATTTCGTAGA 60.874 55.000 8.75 0.00 41.07 2.59
578 579 2.530497 GCCATCCGCGCATTTCGTA 61.530 57.895 8.75 0.00 41.07 3.43
614 615 3.377253 ACTCATGCCATGTTGATTCCT 57.623 42.857 4.31 0.00 0.00 3.36
632 633 1.534729 GGAAGGTCATCGGCAAAACT 58.465 50.000 0.00 0.00 0.00 2.66
639 640 1.447838 CACGTGGGAAGGTCATCGG 60.448 63.158 7.95 0.00 0.00 4.18
648 649 0.311790 GTACTCGTGACACGTGGGAA 59.688 55.000 27.75 14.02 43.14 3.97
697 698 0.878523 CGTGAACCCAGCGACTGAAA 60.879 55.000 8.20 0.00 32.44 2.69
779 780 3.723348 GAAACCACTCGCCGGTGC 61.723 66.667 11.05 0.00 36.67 5.01
919 924 3.871594 AGTTCTCTCTTTTTGACGGTGTG 59.128 43.478 0.00 0.00 0.00 3.82
946 951 0.317436 CACGCGCTACTGATCTCCTC 60.317 60.000 5.73 0.00 0.00 3.71
955 960 1.145803 GAAAACCTTCACGCGCTACT 58.854 50.000 5.73 0.00 0.00 2.57
956 961 0.863144 TGAAAACCTTCACGCGCTAC 59.137 50.000 5.73 0.00 36.62 3.58
957 962 1.803334 ATGAAAACCTTCACGCGCTA 58.197 45.000 5.73 0.00 44.28 4.26
958 963 0.951558 AATGAAAACCTTCACGCGCT 59.048 45.000 5.73 0.00 44.28 5.92
970 976 1.596727 GCGGCACAGCAAAAATGAAAA 59.403 42.857 0.00 0.00 37.05 2.29
1085 1092 4.148825 CCGCCTCCTCCTTGACGG 62.149 72.222 0.00 0.00 0.00 4.79
1135 1142 0.679002 GCATTGGCCTTCTGCTCAGA 60.679 55.000 3.32 0.00 40.92 3.27
1148 1158 3.803082 CGTGGGCGTCTGCATTGG 61.803 66.667 0.00 0.00 45.35 3.16
1212 1222 5.119279 CGATAAATAGGCAAGAATGACCTCG 59.881 44.000 0.00 0.00 33.81 4.63
1287 1297 6.867519 TCAAAATCTGGTCATCTACTGGTA 57.132 37.500 0.00 0.00 0.00 3.25
1298 1324 5.531634 TGAGCACAAAATCAAAATCTGGTC 58.468 37.500 0.00 0.00 0.00 4.02
1363 1389 6.658816 AGTCATACAATGTACAAAATGGCTCA 59.341 34.615 0.00 0.00 0.00 4.26
1370 1396 5.073428 TGCCCAGTCATACAATGTACAAAA 58.927 37.500 0.00 0.00 0.00 2.44
1454 1702 2.704572 CAACCGGAAGAGCAGAAGATT 58.295 47.619 9.46 0.00 0.00 2.40
1455 1703 1.677217 GCAACCGGAAGAGCAGAAGAT 60.677 52.381 9.46 0.00 0.00 2.40
1456 1704 0.320771 GCAACCGGAAGAGCAGAAGA 60.321 55.000 9.46 0.00 0.00 2.87
1457 1705 1.630244 CGCAACCGGAAGAGCAGAAG 61.630 60.000 9.46 0.00 0.00 2.85
1458 1706 1.667830 CGCAACCGGAAGAGCAGAA 60.668 57.895 9.46 0.00 0.00 3.02
1459 1707 2.048222 CGCAACCGGAAGAGCAGA 60.048 61.111 9.46 0.00 0.00 4.26
1460 1708 2.357517 ACGCAACCGGAAGAGCAG 60.358 61.111 9.46 5.59 39.22 4.24
1461 1709 2.664851 CACGCAACCGGAAGAGCA 60.665 61.111 9.46 0.00 39.22 4.26
1462 1710 2.665185 ACACGCAACCGGAAGAGC 60.665 61.111 9.46 5.18 39.22 4.09
1463 1711 2.954753 GCACACGCAACCGGAAGAG 61.955 63.158 9.46 3.98 39.22 2.85
1464 1712 2.970324 GCACACGCAACCGGAAGA 60.970 61.111 9.46 0.00 39.22 2.87
1465 1713 2.972505 AGCACACGCAACCGGAAG 60.973 61.111 9.46 0.00 42.27 3.46
1466 1714 3.276091 CAGCACACGCAACCGGAA 61.276 61.111 9.46 0.00 42.27 4.30
1470 1718 3.211564 ATTGGCAGCACACGCAACC 62.212 57.895 0.00 0.00 42.27 3.77
1471 1719 2.017783 CATTGGCAGCACACGCAAC 61.018 57.895 0.00 0.00 42.27 4.17
1472 1720 2.192187 TCATTGGCAGCACACGCAA 61.192 52.632 0.00 0.00 42.27 4.85
1473 1721 2.594013 TCATTGGCAGCACACGCA 60.594 55.556 0.00 0.00 42.27 5.24
1474 1722 2.126734 GTCATTGGCAGCACACGC 60.127 61.111 0.00 0.00 38.99 5.34
1475 1723 1.794151 TTGGTCATTGGCAGCACACG 61.794 55.000 0.00 0.00 0.00 4.49
1476 1724 0.388659 TTTGGTCATTGGCAGCACAC 59.611 50.000 0.00 0.00 0.00 3.82
1477 1725 1.001068 CATTTGGTCATTGGCAGCACA 59.999 47.619 0.00 0.00 0.00 4.57
1478 1726 1.673626 CCATTTGGTCATTGGCAGCAC 60.674 52.381 0.00 0.00 0.00 4.40
1479 1727 0.609151 CCATTTGGTCATTGGCAGCA 59.391 50.000 0.00 0.00 0.00 4.41
1480 1728 3.446507 CCATTTGGTCATTGGCAGC 57.553 52.632 0.00 0.00 0.00 5.25
1491 1739 3.652057 ACCTACTCATGGACCATTTGG 57.348 47.619 3.52 3.94 42.17 3.28
1492 1740 5.097742 TGTACCTACTCATGGACCATTTG 57.902 43.478 3.52 3.05 0.00 2.32
1493 1741 5.428457 TGATGTACCTACTCATGGACCATTT 59.572 40.000 3.52 0.00 0.00 2.32
1494 1742 4.968719 TGATGTACCTACTCATGGACCATT 59.031 41.667 3.52 0.00 0.00 3.16
1495 1743 4.556697 TGATGTACCTACTCATGGACCAT 58.443 43.478 0.00 0.00 0.00 3.55
1496 1744 3.960755 CTGATGTACCTACTCATGGACCA 59.039 47.826 0.00 0.00 0.00 4.02
1497 1745 3.961408 ACTGATGTACCTACTCATGGACC 59.039 47.826 0.00 0.00 0.00 4.46
1498 1746 4.202161 CCACTGATGTACCTACTCATGGAC 60.202 50.000 0.00 0.00 0.00 4.02
1499 1747 3.960755 CCACTGATGTACCTACTCATGGA 59.039 47.826 0.00 0.00 0.00 3.41
1500 1748 3.706594 ACCACTGATGTACCTACTCATGG 59.293 47.826 0.00 0.00 0.00 3.66
1501 1749 5.105351 TGAACCACTGATGTACCTACTCATG 60.105 44.000 0.00 0.00 0.00 3.07
1502 1750 5.023452 TGAACCACTGATGTACCTACTCAT 58.977 41.667 0.00 0.00 0.00 2.90
1503 1751 4.219944 GTGAACCACTGATGTACCTACTCA 59.780 45.833 0.00 0.00 0.00 3.41
1504 1752 4.463186 AGTGAACCACTGATGTACCTACTC 59.537 45.833 0.00 0.00 43.63 2.59
1505 1753 4.417437 AGTGAACCACTGATGTACCTACT 58.583 43.478 0.00 0.00 43.63 2.57
1506 1754 4.803098 AGTGAACCACTGATGTACCTAC 57.197 45.455 0.00 0.00 43.63 3.18
1507 1755 5.823312 TCTAGTGAACCACTGATGTACCTA 58.177 41.667 9.64 0.00 45.01 3.08
1508 1756 4.673968 TCTAGTGAACCACTGATGTACCT 58.326 43.478 9.64 0.00 45.01 3.08
1509 1757 5.599999 ATCTAGTGAACCACTGATGTACC 57.400 43.478 9.64 0.00 45.01 3.34
1510 1758 7.387948 ACAAAATCTAGTGAACCACTGATGTAC 59.612 37.037 9.64 0.00 45.01 2.90
1511 1759 7.450074 ACAAAATCTAGTGAACCACTGATGTA 58.550 34.615 9.64 0.00 45.01 2.29
1512 1760 6.299141 ACAAAATCTAGTGAACCACTGATGT 58.701 36.000 9.64 3.92 45.01 3.06
1513 1761 6.808008 ACAAAATCTAGTGAACCACTGATG 57.192 37.500 9.64 4.39 45.01 3.07
1514 1762 7.680730 ACTACAAAATCTAGTGAACCACTGAT 58.319 34.615 9.64 7.70 45.01 2.90
1515 1763 7.062749 ACTACAAAATCTAGTGAACCACTGA 57.937 36.000 9.64 5.95 45.01 3.41
1516 1764 6.929049 TGACTACAAAATCTAGTGAACCACTG 59.071 38.462 9.64 1.15 45.01 3.66
1518 1766 6.147328 GGTGACTACAAAATCTAGTGAACCAC 59.853 42.308 0.00 0.00 32.47 4.16
1519 1767 6.183361 TGGTGACTACAAAATCTAGTGAACCA 60.183 38.462 0.00 0.00 36.29 3.67
1520 1768 6.147328 GTGGTGACTACAAAATCTAGTGAACC 59.853 42.308 0.00 0.00 32.65 3.62
1521 1769 6.929606 AGTGGTGACTACAAAATCTAGTGAAC 59.070 38.462 1.04 0.00 0.00 3.18
1522 1770 7.062749 AGTGGTGACTACAAAATCTAGTGAA 57.937 36.000 1.04 0.00 0.00 3.18
1523 1771 6.665992 AGTGGTGACTACAAAATCTAGTGA 57.334 37.500 1.04 0.00 0.00 3.41
1524 1772 6.347725 GCAAGTGGTGACTACAAAATCTAGTG 60.348 42.308 1.04 0.00 0.00 2.74
1525 1773 5.701290 GCAAGTGGTGACTACAAAATCTAGT 59.299 40.000 1.04 0.00 0.00 2.57
1526 1774 5.122396 GGCAAGTGGTGACTACAAAATCTAG 59.878 44.000 1.04 0.00 29.52 2.43
1527 1775 5.001232 GGCAAGTGGTGACTACAAAATCTA 58.999 41.667 1.04 0.00 29.52 1.98
1528 1776 3.821033 GGCAAGTGGTGACTACAAAATCT 59.179 43.478 1.04 0.00 29.52 2.40
1529 1777 3.364964 CGGCAAGTGGTGACTACAAAATC 60.365 47.826 1.04 0.00 30.19 2.17
1530 1778 2.552315 CGGCAAGTGGTGACTACAAAAT 59.448 45.455 1.04 0.00 30.19 1.82
1531 1779 1.944024 CGGCAAGTGGTGACTACAAAA 59.056 47.619 1.04 0.00 30.19 2.44
1532 1780 1.139256 TCGGCAAGTGGTGACTACAAA 59.861 47.619 1.04 0.00 30.19 2.83
1533 1781 0.753867 TCGGCAAGTGGTGACTACAA 59.246 50.000 1.04 0.00 30.19 2.41
1534 1782 0.753867 TTCGGCAAGTGGTGACTACA 59.246 50.000 1.04 0.00 30.19 2.74
1535 1783 2.000447 GATTCGGCAAGTGGTGACTAC 59.000 52.381 0.00 0.00 30.19 2.73
1536 1784 1.403647 CGATTCGGCAAGTGGTGACTA 60.404 52.381 0.00 0.00 30.19 2.59
1537 1785 0.670546 CGATTCGGCAAGTGGTGACT 60.671 55.000 0.00 0.00 30.19 3.41
1538 1786 1.635663 CCGATTCGGCAAGTGGTGAC 61.636 60.000 12.95 0.00 41.17 3.67
1539 1787 1.375396 CCGATTCGGCAAGTGGTGA 60.375 57.895 12.95 0.00 41.17 4.02
1540 1788 3.177600 CCGATTCGGCAAGTGGTG 58.822 61.111 12.95 0.00 41.17 4.17
1550 1798 1.331756 CAAGGGAAATCTGCCGATTCG 59.668 52.381 3.67 0.00 38.89 3.34
1551 1799 1.066152 GCAAGGGAAATCTGCCGATTC 59.934 52.381 3.67 0.00 38.89 2.52
1552 1800 1.106285 GCAAGGGAAATCTGCCGATT 58.894 50.000 0.00 0.00 41.53 3.34
1553 1801 0.257039 AGCAAGGGAAATCTGCCGAT 59.743 50.000 0.00 0.00 38.32 4.18
1554 1802 0.038166 AAGCAAGGGAAATCTGCCGA 59.962 50.000 0.00 0.00 38.32 5.54
1555 1803 0.171903 CAAGCAAGGGAAATCTGCCG 59.828 55.000 0.00 0.00 38.32 5.69
1556 1804 1.260544 ACAAGCAAGGGAAATCTGCC 58.739 50.000 0.00 0.00 0.00 4.85
1557 1805 4.725790 ATTACAAGCAAGGGAAATCTGC 57.274 40.909 0.00 0.00 0.00 4.26
1558 1806 9.487790 TTTAAAATTACAAGCAAGGGAAATCTG 57.512 29.630 0.00 0.00 0.00 2.90
1562 1810 8.563732 GCATTTTAAAATTACAAGCAAGGGAAA 58.436 29.630 10.77 0.00 0.00 3.13
1563 1811 7.936301 AGCATTTTAAAATTACAAGCAAGGGAA 59.064 29.630 10.77 0.00 0.00 3.97
1564 1812 7.387397 CAGCATTTTAAAATTACAAGCAAGGGA 59.613 33.333 10.77 0.00 0.00 4.20
1565 1813 7.387397 TCAGCATTTTAAAATTACAAGCAAGGG 59.613 33.333 10.77 3.73 0.00 3.95
1566 1814 8.309163 TCAGCATTTTAAAATTACAAGCAAGG 57.691 30.769 10.77 5.73 0.00 3.61
1567 1815 7.953710 GCTCAGCATTTTAAAATTACAAGCAAG 59.046 33.333 19.95 16.39 0.00 4.01
1568 1816 7.095271 GGCTCAGCATTTTAAAATTACAAGCAA 60.095 33.333 23.16 12.22 0.00 3.91
1569 1817 6.368516 GGCTCAGCATTTTAAAATTACAAGCA 59.631 34.615 23.16 7.94 0.00 3.91
1570 1818 6.368516 TGGCTCAGCATTTTAAAATTACAAGC 59.631 34.615 10.77 15.50 0.00 4.01
1571 1819 7.887996 TGGCTCAGCATTTTAAAATTACAAG 57.112 32.000 10.77 7.90 0.00 3.16
1572 1820 8.845413 AATGGCTCAGCATTTTAAAATTACAA 57.155 26.923 10.77 0.00 0.00 2.41
1573 1821 8.719648 CAAATGGCTCAGCATTTTAAAATTACA 58.280 29.630 10.77 3.75 0.00 2.41
1574 1822 8.934825 TCAAATGGCTCAGCATTTTAAAATTAC 58.065 29.630 10.77 6.64 0.00 1.89
1575 1823 8.934825 GTCAAATGGCTCAGCATTTTAAAATTA 58.065 29.630 10.77 0.00 0.00 1.40
1576 1824 7.444792 TGTCAAATGGCTCAGCATTTTAAAATT 59.555 29.630 10.77 0.00 0.00 1.82
1577 1825 6.935771 TGTCAAATGGCTCAGCATTTTAAAAT 59.064 30.769 7.64 7.64 0.00 1.82
1578 1826 6.286758 TGTCAAATGGCTCAGCATTTTAAAA 58.713 32.000 2.51 2.51 0.00 1.52
1579 1827 5.851720 TGTCAAATGGCTCAGCATTTTAAA 58.148 33.333 0.00 0.00 0.00 1.52
1580 1828 5.465532 TGTCAAATGGCTCAGCATTTTAA 57.534 34.783 0.00 0.00 0.00 1.52
1581 1829 5.465532 TTGTCAAATGGCTCAGCATTTTA 57.534 34.783 0.00 0.00 0.00 1.52
1582 1830 4.339872 TTGTCAAATGGCTCAGCATTTT 57.660 36.364 0.00 0.00 0.00 1.82
1583 1831 4.339872 TTTGTCAAATGGCTCAGCATTT 57.660 36.364 0.00 0.00 0.00 2.32
1584 1832 4.312443 CTTTTGTCAAATGGCTCAGCATT 58.688 39.130 0.00 0.00 0.00 3.56
1585 1833 3.306502 CCTTTTGTCAAATGGCTCAGCAT 60.307 43.478 15.21 0.00 0.00 3.79
1586 1834 2.036217 CCTTTTGTCAAATGGCTCAGCA 59.964 45.455 15.21 0.00 0.00 4.41
1587 1835 2.036346 ACCTTTTGTCAAATGGCTCAGC 59.964 45.455 23.57 0.00 38.81 4.26
1588 1836 4.202141 TGAACCTTTTGTCAAATGGCTCAG 60.202 41.667 22.88 8.27 36.47 3.35
1589 1837 3.703556 TGAACCTTTTGTCAAATGGCTCA 59.296 39.130 22.88 22.88 38.02 4.26
1590 1838 4.202151 ACTGAACCTTTTGTCAAATGGCTC 60.202 41.667 23.57 21.45 38.81 4.70
1591 1839 3.706086 ACTGAACCTTTTGTCAAATGGCT 59.294 39.130 23.57 15.42 38.81 4.75
1592 1840 4.058721 ACTGAACCTTTTGTCAAATGGC 57.941 40.909 23.57 12.91 38.81 4.40
1593 1841 5.519927 GTGAACTGAACCTTTTGTCAAATGG 59.480 40.000 22.53 22.53 40.50 3.16
1594 1842 6.332630 AGTGAACTGAACCTTTTGTCAAATG 58.667 36.000 0.00 1.55 0.00 2.32
1595 1843 6.530019 AGTGAACTGAACCTTTTGTCAAAT 57.470 33.333 0.00 0.00 0.00 2.32
1596 1844 5.975693 AGTGAACTGAACCTTTTGTCAAA 57.024 34.783 0.00 0.00 0.00 2.69
1597 1845 5.475220 TGAAGTGAACTGAACCTTTTGTCAA 59.525 36.000 0.00 0.00 0.00 3.18
1598 1846 5.007034 TGAAGTGAACTGAACCTTTTGTCA 58.993 37.500 0.00 0.00 0.00 3.58
1599 1847 5.449177 CCTGAAGTGAACTGAACCTTTTGTC 60.449 44.000 0.00 0.00 0.00 3.18
1600 1848 4.399303 CCTGAAGTGAACTGAACCTTTTGT 59.601 41.667 0.00 0.00 0.00 2.83
1601 1849 4.202050 CCCTGAAGTGAACTGAACCTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
1602 1850 3.954258 CCCTGAAGTGAACTGAACCTTTT 59.046 43.478 0.00 0.00 0.00 2.27
1603 1851 3.053619 ACCCTGAAGTGAACTGAACCTTT 60.054 43.478 0.00 0.00 0.00 3.11
1604 1852 2.509964 ACCCTGAAGTGAACTGAACCTT 59.490 45.455 0.00 0.00 0.00 3.50
1605 1853 2.127708 ACCCTGAAGTGAACTGAACCT 58.872 47.619 0.00 0.00 0.00 3.50
1606 1854 2.158813 TCACCCTGAAGTGAACTGAACC 60.159 50.000 0.00 0.00 43.65 3.62
1607 1855 3.194005 TCACCCTGAAGTGAACTGAAC 57.806 47.619 0.00 0.00 43.65 3.18
1614 1862 4.199310 CAAAGAAGTTCACCCTGAAGTGA 58.801 43.478 5.50 0.00 44.89 3.41
1615 1863 3.243201 GCAAAGAAGTTCACCCTGAAGTG 60.243 47.826 5.50 0.00 38.97 3.16
1616 1864 2.952310 GCAAAGAAGTTCACCCTGAAGT 59.048 45.455 5.50 0.00 41.46 3.01
1617 1865 2.951642 TGCAAAGAAGTTCACCCTGAAG 59.048 45.455 5.50 0.00 37.00 3.02
1618 1866 2.951642 CTGCAAAGAAGTTCACCCTGAA 59.048 45.455 5.50 0.00 33.32 3.02
1619 1867 2.092429 ACTGCAAAGAAGTTCACCCTGA 60.092 45.455 5.50 0.00 0.00 3.86
1620 1868 2.291741 GACTGCAAAGAAGTTCACCCTG 59.708 50.000 5.50 0.00 0.00 4.45
1621 1869 2.092429 TGACTGCAAAGAAGTTCACCCT 60.092 45.455 5.50 0.00 0.00 4.34
1622 1870 2.033424 GTGACTGCAAAGAAGTTCACCC 59.967 50.000 5.50 0.00 0.00 4.61
1623 1871 2.945668 AGTGACTGCAAAGAAGTTCACC 59.054 45.455 5.50 0.00 31.60 4.02
1624 1872 4.333926 AGAAGTGACTGCAAAGAAGTTCAC 59.666 41.667 5.50 0.00 0.00 3.18
1625 1873 4.517285 AGAAGTGACTGCAAAGAAGTTCA 58.483 39.130 5.50 0.00 0.00 3.18
1626 1874 4.572389 TGAGAAGTGACTGCAAAGAAGTTC 59.428 41.667 0.00 0.00 0.00 3.01
1627 1875 4.517285 TGAGAAGTGACTGCAAAGAAGTT 58.483 39.130 0.00 0.00 0.00 2.66
1628 1876 4.125703 CTGAGAAGTGACTGCAAAGAAGT 58.874 43.478 0.00 0.00 0.00 3.01
1629 1877 3.497640 CCTGAGAAGTGACTGCAAAGAAG 59.502 47.826 0.00 0.00 0.00 2.85
1630 1878 3.470709 CCTGAGAAGTGACTGCAAAGAA 58.529 45.455 0.00 0.00 0.00 2.52
1631 1879 2.224378 CCCTGAGAAGTGACTGCAAAGA 60.224 50.000 0.00 0.00 0.00 2.52
1632 1880 2.149578 CCCTGAGAAGTGACTGCAAAG 58.850 52.381 0.00 0.00 0.00 2.77
1633 1881 1.768275 TCCCTGAGAAGTGACTGCAAA 59.232 47.619 0.00 0.00 0.00 3.68
1634 1882 1.345741 CTCCCTGAGAAGTGACTGCAA 59.654 52.381 0.00 0.00 0.00 4.08
1635 1883 0.972134 CTCCCTGAGAAGTGACTGCA 59.028 55.000 0.00 0.00 0.00 4.41
1636 1884 0.390998 GCTCCCTGAGAAGTGACTGC 60.391 60.000 0.00 0.00 0.00 4.40
1637 1885 0.108898 CGCTCCCTGAGAAGTGACTG 60.109 60.000 0.00 0.00 0.00 3.51
1638 1886 0.540830 ACGCTCCCTGAGAAGTGACT 60.541 55.000 3.03 0.00 0.00 3.41
1639 1887 0.109039 GACGCTCCCTGAGAAGTGAC 60.109 60.000 3.03 0.00 0.00 3.67
1640 1888 1.587043 CGACGCTCCCTGAGAAGTGA 61.587 60.000 3.03 0.00 0.00 3.41
1641 1889 1.153939 CGACGCTCCCTGAGAAGTG 60.154 63.158 0.00 0.00 0.00 3.16
1642 1890 0.894184 TTCGACGCTCCCTGAGAAGT 60.894 55.000 0.00 0.00 0.00 3.01
1643 1891 0.179150 CTTCGACGCTCCCTGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
1644 1892 1.595993 CCTTCGACGCTCCCTGAGAA 61.596 60.000 0.00 0.00 0.00 2.87
1645 1893 2.046864 CCTTCGACGCTCCCTGAGA 61.047 63.158 0.00 0.00 0.00 3.27
1646 1894 1.388065 ATCCTTCGACGCTCCCTGAG 61.388 60.000 0.00 0.00 0.00 3.35
1647 1895 1.379977 ATCCTTCGACGCTCCCTGA 60.380 57.895 0.00 0.00 0.00 3.86
1648 1896 1.066587 GATCCTTCGACGCTCCCTG 59.933 63.158 0.00 0.00 0.00 4.45
1649 1897 0.684805 AAGATCCTTCGACGCTCCCT 60.685 55.000 0.00 0.00 0.00 4.20
1650 1898 0.249114 GAAGATCCTTCGACGCTCCC 60.249 60.000 0.00 0.00 0.00 4.30
1651 1899 0.741915 AGAAGATCCTTCGACGCTCC 59.258 55.000 0.00 0.00 0.00 4.70
1652 1900 2.098443 AGAAGAAGATCCTTCGACGCTC 59.902 50.000 6.19 0.00 45.32 5.03
1653 1901 2.096248 AGAAGAAGATCCTTCGACGCT 58.904 47.619 6.19 0.00 45.32 5.07
1654 1902 2.159366 TGAGAAGAAGATCCTTCGACGC 60.159 50.000 6.19 0.00 45.32 5.19
1655 1903 3.766676 TGAGAAGAAGATCCTTCGACG 57.233 47.619 6.19 0.00 45.32 5.12
1656 1904 4.340950 AGGATGAGAAGAAGATCCTTCGAC 59.659 45.833 0.00 5.88 42.90 4.20
1657 1905 4.340666 CAGGATGAGAAGAAGATCCTTCGA 59.659 45.833 0.00 0.00 42.90 3.71
1658 1906 4.099266 ACAGGATGAGAAGAAGATCCTTCG 59.901 45.833 0.00 0.00 42.90 3.79
1659 1907 5.128499 TGACAGGATGAGAAGAAGATCCTTC 59.872 44.000 0.00 4.11 42.90 3.46
1660 1908 5.028802 TGACAGGATGAGAAGAAGATCCTT 58.971 41.667 0.00 0.00 42.90 3.36
1661 1909 4.405358 GTGACAGGATGAGAAGAAGATCCT 59.595 45.833 0.00 0.00 45.78 3.24
1662 1910 4.442753 GGTGACAGGATGAGAAGAAGATCC 60.443 50.000 0.00 0.00 39.69 3.36
1671 1919 0.984230 GGTTGGGTGACAGGATGAGA 59.016 55.000 0.00 0.00 39.69 3.27
1815 2071 3.322254 AGATCAGATCCACCGGATGTAAC 59.678 47.826 9.46 0.00 43.27 2.50
1822 2078 3.616076 GCAATCTAGATCAGATCCACCGG 60.616 52.174 5.51 0.00 43.56 5.28
1829 2085 7.601886 CACTATTTTCGGCAATCTAGATCAGAT 59.398 37.037 5.51 0.00 46.48 2.90
1835 2091 4.765273 TGCACTATTTTCGGCAATCTAGA 58.235 39.130 0.00 0.00 32.54 2.43
1845 2107 5.757886 TCCACTTCTTTTGCACTATTTTCG 58.242 37.500 0.00 0.00 0.00 3.46
1880 2142 9.161629 TCCATCATTTGTATGTTTGTAGTACAG 57.838 33.333 2.68 0.00 33.34 2.74
1887 2149 8.954950 TTTTGTTCCATCATTTGTATGTTTGT 57.045 26.923 0.00 0.00 33.34 2.83
1965 2227 3.741860 GCAAGTGCTGAGTGCTGT 58.258 55.556 0.00 0.00 43.37 4.40
2019 2281 6.287525 CCAATCAAACAATGTACAAAAGGGT 58.712 36.000 0.00 0.00 0.00 4.34
2056 2318 2.160417 CGCAGAGAATTTCACCCTGAAC 59.840 50.000 13.88 1.88 35.89 3.18
2089 2352 8.763984 ATGAGAAATCCTTCTTTGATGCTATT 57.236 30.769 0.00 0.00 42.19 1.73
2165 2428 6.486253 TCTTTAGTTGCTGCAATCTAGTTG 57.514 37.500 19.11 13.27 40.90 3.16
2209 2472 7.444792 AGAATTGCAGAATGTAAAATTTTGCCA 59.555 29.630 13.76 10.11 45.69 4.92
2249 2512 7.771183 TCTTCTTTTACACTGTTTTCTGCAAT 58.229 30.769 0.00 0.00 0.00 3.56
2314 2578 0.240945 CCGGCTGCTCGATTTTGTTT 59.759 50.000 11.24 0.00 0.00 2.83
2413 2678 0.750850 TCTTACTACTGGGCGCATCC 59.249 55.000 10.83 1.84 0.00 3.51
2446 2711 2.567169 GGAAGCCCTGCTGGTAAATTTT 59.433 45.455 9.00 0.00 39.62 1.82
2449 2714 0.394352 CGGAAGCCCTGCTGGTAAAT 60.394 55.000 9.00 0.00 39.62 1.40
2493 2758 1.620819 AGAAGCTCGCTTTCCTTCAGA 59.379 47.619 5.53 0.00 37.91 3.27
2757 3026 6.710744 TCCAGTGGTTATTCTTCTTCAGAAAC 59.289 38.462 9.54 0.00 45.06 2.78
2785 3054 3.854666 ACACGTCCTCATCTTGATCAAG 58.145 45.455 26.56 26.56 39.71 3.02
2908 3177 1.204941 CCGTAAGCAAGCTAGGTGTCT 59.795 52.381 0.00 0.00 0.00 3.41
2914 3183 7.120873 TCCTACTTATATCCGTAAGCAAGCTAG 59.879 40.741 0.00 0.00 35.55 3.42
2920 3189 6.964807 TTGTCCTACTTATATCCGTAAGCA 57.035 37.500 0.00 0.00 35.55 3.91
2968 3237 7.287810 ACAAGGTTAATCCCCATTAGTGATAC 58.712 38.462 0.00 0.00 36.75 2.24
2970 3239 6.069088 TGACAAGGTTAATCCCCATTAGTGAT 60.069 38.462 0.00 0.00 36.75 3.06
3380 3662 7.423199 CATTTGGTGATTCCATATTCTGTGAG 58.577 38.462 0.00 0.00 46.60 3.51
3517 3800 1.334992 CGTTCGGGATATACGCTGCG 61.335 60.000 21.91 21.91 0.00 5.18
3523 3806 2.165845 CCTGGGATCGTTCGGGATATAC 59.834 54.545 2.14 0.00 0.00 1.47
3528 3811 0.905809 TTTCCTGGGATCGTTCGGGA 60.906 55.000 5.98 5.98 0.00 5.14
3544 3827 0.662970 TTCATGCCGTTGCGCTTTTC 60.663 50.000 9.73 0.00 41.78 2.29
3578 3861 5.825151 TGTGACACCATGACACAAATAAGAA 59.175 36.000 10.86 0.00 46.47 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.