Multiple sequence alignment - TraesCS1A01G173000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G173000 chr1A 100.000 2279 0 0 1 2279 308812410 308810132 0.000000e+00 4209
1 TraesCS1A01G173000 chr1D 88.333 1380 63 45 533 1847 236808369 236809715 0.000000e+00 1567
2 TraesCS1A01G173000 chr1D 90.149 538 27 13 1 520 236807688 236808217 0.000000e+00 676
3 TraesCS1A01G173000 chr1D 96.552 116 4 0 2155 2270 236810484 236810599 2.310000e-45 193
4 TraesCS1A01G173000 chr1D 98.529 68 1 0 2071 2138 236809725 236809792 1.110000e-23 121
5 TraesCS1A01G173000 chr1B 88.663 838 47 16 3 817 342118046 342118858 0.000000e+00 977
6 TraesCS1A01G173000 chr1B 90.193 571 30 11 803 1355 342122250 342122812 0.000000e+00 721
7 TraesCS1A01G173000 chr1B 91.643 347 21 2 1420 1766 342123021 342123359 7.370000e-130 473
8 TraesCS1A01G173000 chr1B 94.821 251 12 1 2020 2270 342201988 342202237 7.630000e-105 390
9 TraesCS1A01G173000 chr1B 91.538 130 10 1 1813 1941 342201848 342201977 6.470000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G173000 chr1A 308810132 308812410 2278 True 4209.000000 4209 100.000000 1 2279 1 chr1A.!!$R1 2278
1 TraesCS1A01G173000 chr1D 236807688 236810599 2911 False 639.250000 1567 93.390750 1 2270 4 chr1D.!!$F1 2269
2 TraesCS1A01G173000 chr1B 342118046 342123359 5313 False 723.666667 977 90.166333 3 1766 3 chr1B.!!$F1 1763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.03467 AGGTGCATCTCTTCCCTTGC 60.035 55.0 0.0 0.0 35.67 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 5825 0.034186 CTTGCCCAGGCCTCATGTAA 60.034 55.0 0.0 0.0 41.09 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 5.163754 CCGATTATCTTTCTGTTGGACCAAC 60.164 44.000 27.46 27.46 43.78 3.77
87 88 0.739462 GGCCGCCTAACAATTTTGGC 60.739 55.000 0.71 0.36 46.70 4.52
111 112 3.749665 TCTTGGAATTTGGCAAGGTTG 57.250 42.857 0.00 0.00 0.00 3.77
123 124 1.086696 CAAGGTTGTATGGTGGCGAG 58.913 55.000 0.00 0.00 0.00 5.03
173 174 1.918609 GCGACGAAGACATCTTGGTAC 59.081 52.381 9.00 2.35 43.38 3.34
213 214 0.034670 AGGTGCATCTCTTCCCTTGC 60.035 55.000 0.00 0.00 35.67 4.01
252 253 4.081142 TGGTGCTAGCTTTACTAATGCTGA 60.081 41.667 17.23 1.91 41.39 4.26
308 329 3.180507 AGCCAGTTCATCTCTCCTTTCT 58.819 45.455 0.00 0.00 0.00 2.52
309 330 3.197549 AGCCAGTTCATCTCTCCTTTCTC 59.802 47.826 0.00 0.00 0.00 2.87
406 428 1.817941 GTGGTGTGGCGTCAAGTGT 60.818 57.895 0.00 0.00 0.00 3.55
407 429 1.817520 TGGTGTGGCGTCAAGTGTG 60.818 57.895 0.00 0.00 0.00 3.82
408 430 1.522806 GGTGTGGCGTCAAGTGTGA 60.523 57.895 0.00 0.00 0.00 3.58
409 431 1.092921 GGTGTGGCGTCAAGTGTGAA 61.093 55.000 0.00 0.00 34.87 3.18
410 432 0.304705 GTGTGGCGTCAAGTGTGAAG 59.695 55.000 0.00 0.00 34.87 3.02
411 433 0.176910 TGTGGCGTCAAGTGTGAAGA 59.823 50.000 0.00 0.00 35.47 2.87
412 434 0.582005 GTGGCGTCAAGTGTGAAGAC 59.418 55.000 0.00 0.00 41.31 3.01
444 469 0.319900 ACCTGTCACACATCACGAGC 60.320 55.000 0.00 0.00 0.00 5.03
470 495 1.442148 GGAGGAAGATCGGGGTTCG 59.558 63.158 0.00 0.00 40.90 3.95
563 727 5.304778 TGAAGCTTGTACTAGCATGTTTCA 58.695 37.500 27.17 23.12 43.68 2.69
606 770 1.404181 CGTCATCCTTGTCACCACGAT 60.404 52.381 0.00 0.00 0.00 3.73
634 798 2.094182 TCTGAAGCCTAACCACGTGATC 60.094 50.000 19.30 2.77 0.00 2.92
679 844 2.857186 TGACATGCTAAACAGAGGCA 57.143 45.000 0.00 0.00 40.32 4.75
736 910 6.680148 TGGCTGCTCCAATATATAAGTACA 57.320 37.500 0.00 0.00 43.21 2.90
737 911 7.073457 TGGCTGCTCCAATATATAAGTACAA 57.927 36.000 0.00 0.00 43.21 2.41
738 912 7.689299 TGGCTGCTCCAATATATAAGTACAAT 58.311 34.615 0.00 0.00 43.21 2.71
766 943 1.269166 GTCAATCCGTCACGCTACTG 58.731 55.000 0.00 0.00 0.00 2.74
878 4465 5.266242 CCGCTATAAAAAGTAGCAAAGCAG 58.734 41.667 6.04 0.00 43.65 4.24
905 4492 3.454447 TCTGTGTTCAAACCTCTTGAGGA 59.546 43.478 22.10 0.00 0.00 3.71
986 4574 1.752498 TCGACGCTATAGCTTTTCCCA 59.248 47.619 21.98 2.52 39.32 4.37
1027 4616 0.900182 ATCACGAGACACCAGGCTCA 60.900 55.000 0.00 0.00 0.00 4.26
1028 4617 1.080230 CACGAGACACCAGGCTCAG 60.080 63.158 0.00 0.00 0.00 3.35
1029 4618 2.279069 ACGAGACACCAGGCTCAGG 61.279 63.158 0.00 0.00 0.00 3.86
1030 4619 2.267324 GAGACACCAGGCTCAGGC 59.733 66.667 0.00 0.00 37.82 4.85
1031 4620 2.203907 AGACACCAGGCTCAGGCT 60.204 61.111 0.00 0.00 39.66 4.58
1032 4621 2.237534 GAGACACCAGGCTCAGGCTC 62.238 65.000 0.00 0.00 35.88 4.70
1054 4643 2.033602 TCACGCTCCTCCTCGTCA 59.966 61.111 0.00 0.00 36.73 4.35
1071 4660 2.753452 CGTCACCCTTCTTCTGCTAGTA 59.247 50.000 0.00 0.00 0.00 1.82
1174 4763 1.755008 GCCTACTCCTCCGAGCAGT 60.755 63.158 0.00 0.00 40.03 4.40
1195 4784 1.699343 GTCTTCGTCGACTTCAAGGG 58.301 55.000 14.70 0.00 0.00 3.95
1283 4892 1.475751 CCCACTGCACAACTGAGACTT 60.476 52.381 0.00 0.00 0.00 3.01
1304 4914 2.902608 TCTTCTACCCTGCAAGAGGAA 58.097 47.619 4.18 0.00 46.33 3.36
1307 4917 3.418684 TCTACCCTGCAAGAGGAAAAC 57.581 47.619 4.18 0.00 46.33 2.43
1312 4922 3.589288 ACCCTGCAAGAGGAAAACTAGAT 59.411 43.478 0.00 0.00 46.33 1.98
1388 5140 7.289310 AGAACACCTAGGAGTATAGAAGTACC 58.711 42.308 17.98 0.00 0.00 3.34
1389 5141 5.619220 ACACCTAGGAGTATAGAAGTACCG 58.381 45.833 17.98 0.00 0.00 4.02
1391 5143 6.327626 ACACCTAGGAGTATAGAAGTACCGTA 59.672 42.308 17.98 0.00 0.00 4.02
1393 5145 7.333921 CACCTAGGAGTATAGAAGTACCGTATG 59.666 44.444 17.98 0.00 0.00 2.39
1396 5156 9.935241 CTAGGAGTATAGAAGTACCGTATGTAA 57.065 37.037 0.00 0.00 0.00 2.41
1406 5166 6.022163 AGTACCGTATGTAATATCTGGCAC 57.978 41.667 0.00 0.00 0.00 5.01
1409 5169 5.539048 ACCGTATGTAATATCTGGCACTTC 58.461 41.667 0.00 0.00 0.00 3.01
1414 5174 7.171508 CGTATGTAATATCTGGCACTTCAACAT 59.828 37.037 0.00 0.00 0.00 2.71
1425 5185 4.244862 GCACTTCAACATGTAAAATGGGG 58.755 43.478 0.00 0.00 0.00 4.96
1426 5186 4.244862 CACTTCAACATGTAAAATGGGGC 58.755 43.478 0.00 0.00 0.00 5.80
1427 5187 3.900601 ACTTCAACATGTAAAATGGGGCA 59.099 39.130 0.00 0.00 0.00 5.36
1428 5188 3.951775 TCAACATGTAAAATGGGGCAC 57.048 42.857 0.00 0.00 0.00 5.01
1453 5222 0.686441 CTCTCCGGGTGTCCATGGTA 60.686 60.000 12.58 0.00 0.00 3.25
1480 5259 4.625972 TGCACTGAAATGTATGCAGATG 57.374 40.909 0.00 0.00 42.92 2.90
1481 5260 4.011698 TGCACTGAAATGTATGCAGATGT 58.988 39.130 0.00 0.00 42.92 3.06
1482 5261 4.142556 TGCACTGAAATGTATGCAGATGTG 60.143 41.667 0.00 0.00 42.92 3.21
1483 5262 4.142534 GCACTGAAATGTATGCAGATGTGT 60.143 41.667 0.00 0.00 38.00 3.72
1484 5263 5.065090 GCACTGAAATGTATGCAGATGTGTA 59.935 40.000 0.00 0.00 38.00 2.90
1485 5264 6.403527 GCACTGAAATGTATGCAGATGTGTAA 60.404 38.462 0.00 0.00 38.00 2.41
1486 5265 7.680350 GCACTGAAATGTATGCAGATGTGTAAT 60.680 37.037 0.00 0.00 38.00 1.89
1487 5266 7.642586 CACTGAAATGTATGCAGATGTGTAATG 59.357 37.037 0.00 0.00 33.94 1.90
1488 5267 7.337689 ACTGAAATGTATGCAGATGTGTAATGT 59.662 33.333 0.00 0.00 33.94 2.71
1538 5317 1.784525 AAGTCTTCAGCGTGTACAGC 58.215 50.000 0.00 2.23 0.00 4.40
1561 5340 1.200948 GGCTCTTGTCCATTTGCAGAC 59.799 52.381 0.00 0.00 0.00 3.51
1577 5356 9.438228 CATTTGCAGACTAGAATATGATCAGAT 57.562 33.333 0.09 0.00 0.00 2.90
1697 5476 0.038892 GGCCACATGACAACAGCAAG 60.039 55.000 0.00 0.00 0.00 4.01
1753 5532 9.754382 GTCCAAATGCATATGATTGTTTATTCT 57.246 29.630 6.97 0.00 0.00 2.40
1847 5627 6.737720 ACCAGAGAGATCACAAGCATATTA 57.262 37.500 0.00 0.00 0.00 0.98
1848 5628 7.129457 ACCAGAGAGATCACAAGCATATTAA 57.871 36.000 0.00 0.00 0.00 1.40
1849 5629 7.215789 ACCAGAGAGATCACAAGCATATTAAG 58.784 38.462 0.00 0.00 0.00 1.85
1850 5630 6.649973 CCAGAGAGATCACAAGCATATTAAGG 59.350 42.308 0.00 0.00 0.00 2.69
1851 5631 7.215789 CAGAGAGATCACAAGCATATTAAGGT 58.784 38.462 0.00 0.00 0.00 3.50
1855 5635 2.942376 TCACAAGCATATTAAGGTGCCG 59.058 45.455 10.30 6.00 42.20 5.69
1856 5636 2.682856 CACAAGCATATTAAGGTGCCGT 59.317 45.455 10.30 6.51 42.20 5.68
1857 5637 2.682856 ACAAGCATATTAAGGTGCCGTG 59.317 45.455 10.30 10.97 42.20 4.94
1858 5638 2.942376 CAAGCATATTAAGGTGCCGTGA 59.058 45.455 10.30 0.00 42.20 4.35
1859 5639 3.492102 AGCATATTAAGGTGCCGTGAT 57.508 42.857 10.30 0.00 42.20 3.06
1860 5640 3.141398 AGCATATTAAGGTGCCGTGATG 58.859 45.455 10.30 0.00 42.20 3.07
1861 5641 2.350772 GCATATTAAGGTGCCGTGATGC 60.351 50.000 4.03 0.00 35.35 3.91
1862 5642 3.141398 CATATTAAGGTGCCGTGATGCT 58.859 45.455 0.00 0.00 0.00 3.79
1863 5643 1.382522 ATTAAGGTGCCGTGATGCTG 58.617 50.000 0.00 0.00 0.00 4.41
1864 5644 0.323302 TTAAGGTGCCGTGATGCTGA 59.677 50.000 0.00 0.00 0.00 4.26
1865 5645 0.108186 TAAGGTGCCGTGATGCTGAG 60.108 55.000 0.00 0.00 0.00 3.35
1866 5646 2.046892 GGTGCCGTGATGCTGAGT 60.047 61.111 0.00 0.00 0.00 3.41
1867 5647 2.393768 GGTGCCGTGATGCTGAGTG 61.394 63.158 0.00 0.00 0.00 3.51
1868 5648 2.046988 TGCCGTGATGCTGAGTGG 60.047 61.111 0.00 0.00 0.00 4.00
1869 5649 2.821366 GCCGTGATGCTGAGTGGG 60.821 66.667 0.00 0.00 0.00 4.61
1870 5650 2.981302 CCGTGATGCTGAGTGGGA 59.019 61.111 0.00 0.00 0.00 4.37
1871 5651 1.524002 CCGTGATGCTGAGTGGGAT 59.476 57.895 0.00 0.00 0.00 3.85
1872 5652 0.752658 CCGTGATGCTGAGTGGGATA 59.247 55.000 0.00 0.00 0.00 2.59
1873 5653 1.269988 CCGTGATGCTGAGTGGGATAG 60.270 57.143 0.00 0.00 0.00 2.08
1874 5654 1.871408 CGTGATGCTGAGTGGGATAGC 60.871 57.143 0.00 0.00 37.93 2.97
1875 5655 1.415659 GTGATGCTGAGTGGGATAGCT 59.584 52.381 0.00 0.00 38.25 3.32
1876 5656 1.690893 TGATGCTGAGTGGGATAGCTC 59.309 52.381 0.00 0.00 38.25 4.09
1877 5657 1.969923 GATGCTGAGTGGGATAGCTCT 59.030 52.381 0.00 0.00 38.25 4.09
1878 5658 2.755952 TGCTGAGTGGGATAGCTCTA 57.244 50.000 0.00 0.00 38.25 2.43
1879 5659 3.251016 TGCTGAGTGGGATAGCTCTAT 57.749 47.619 0.00 0.00 38.25 1.98
1880 5660 3.161067 TGCTGAGTGGGATAGCTCTATC 58.839 50.000 8.09 8.09 40.83 2.08
1881 5661 3.161067 GCTGAGTGGGATAGCTCTATCA 58.839 50.000 16.19 0.00 42.76 2.15
1882 5662 3.576118 GCTGAGTGGGATAGCTCTATCAA 59.424 47.826 16.19 4.07 42.76 2.57
1883 5663 4.222588 GCTGAGTGGGATAGCTCTATCAAT 59.777 45.833 16.19 0.15 42.76 2.57
1884 5664 5.279910 GCTGAGTGGGATAGCTCTATCAATT 60.280 44.000 16.19 3.81 42.76 2.32
1885 5665 6.743773 GCTGAGTGGGATAGCTCTATCAATTT 60.744 42.308 16.19 2.44 42.76 1.82
1886 5666 6.763355 TGAGTGGGATAGCTCTATCAATTTC 58.237 40.000 16.19 9.86 42.76 2.17
1887 5667 6.327365 TGAGTGGGATAGCTCTATCAATTTCA 59.673 38.462 16.19 11.67 42.76 2.69
1888 5668 6.767456 AGTGGGATAGCTCTATCAATTTCAG 58.233 40.000 16.19 0.00 42.76 3.02
1889 5669 5.936956 GTGGGATAGCTCTATCAATTTCAGG 59.063 44.000 16.19 0.00 42.76 3.86
1890 5670 5.846164 TGGGATAGCTCTATCAATTTCAGGA 59.154 40.000 16.19 0.00 42.76 3.86
1891 5671 6.169800 GGGATAGCTCTATCAATTTCAGGAC 58.830 44.000 16.19 0.00 42.76 3.85
1892 5672 6.239714 GGGATAGCTCTATCAATTTCAGGACA 60.240 42.308 16.19 0.00 42.76 4.02
1893 5673 6.648725 GGATAGCTCTATCAATTTCAGGACAC 59.351 42.308 16.19 0.00 42.76 3.67
1894 5674 5.426689 AGCTCTATCAATTTCAGGACACA 57.573 39.130 0.00 0.00 0.00 3.72
1895 5675 5.426504 AGCTCTATCAATTTCAGGACACAG 58.573 41.667 0.00 0.00 0.00 3.66
1896 5676 5.188555 AGCTCTATCAATTTCAGGACACAGA 59.811 40.000 0.00 0.00 0.00 3.41
1897 5677 5.877012 GCTCTATCAATTTCAGGACACAGAA 59.123 40.000 0.00 0.00 0.00 3.02
1898 5678 6.183360 GCTCTATCAATTTCAGGACACAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
1899 5679 7.009179 TCTATCAATTTCAGGACACAGAACT 57.991 36.000 0.00 0.00 0.00 3.01
1900 5680 5.954296 ATCAATTTCAGGACACAGAACTG 57.046 39.130 0.00 0.00 0.00 3.16
1901 5681 5.034852 TCAATTTCAGGACACAGAACTGA 57.965 39.130 8.87 0.00 39.31 3.41
1902 5682 5.624159 TCAATTTCAGGACACAGAACTGAT 58.376 37.500 8.87 0.00 40.56 2.90
1903 5683 5.471116 TCAATTTCAGGACACAGAACTGATG 59.529 40.000 8.87 5.97 40.56 3.07
1904 5684 3.407424 TTCAGGACACAGAACTGATGG 57.593 47.619 8.87 0.98 40.56 3.51
1905 5685 2.608623 TCAGGACACAGAACTGATGGA 58.391 47.619 8.87 0.00 36.41 3.41
1906 5686 2.972021 TCAGGACACAGAACTGATGGAA 59.028 45.455 8.87 0.00 36.41 3.53
1907 5687 3.390967 TCAGGACACAGAACTGATGGAAA 59.609 43.478 8.87 0.00 36.41 3.13
1908 5688 3.750130 CAGGACACAGAACTGATGGAAAG 59.250 47.826 8.87 0.00 34.21 2.62
1909 5689 3.648067 AGGACACAGAACTGATGGAAAGA 59.352 43.478 8.87 0.00 0.00 2.52
1910 5690 4.288105 AGGACACAGAACTGATGGAAAGAT 59.712 41.667 8.87 0.00 0.00 2.40
1911 5691 5.006386 GGACACAGAACTGATGGAAAGATT 58.994 41.667 8.87 0.00 0.00 2.40
1912 5692 5.106396 GGACACAGAACTGATGGAAAGATTG 60.106 44.000 8.87 0.00 0.00 2.67
1913 5693 4.217118 ACACAGAACTGATGGAAAGATTGC 59.783 41.667 8.87 0.00 0.00 3.56
1914 5694 3.760684 ACAGAACTGATGGAAAGATTGCC 59.239 43.478 8.87 0.00 0.00 4.52
1915 5695 3.760151 CAGAACTGATGGAAAGATTGCCA 59.240 43.478 0.00 0.00 38.78 4.92
1917 5697 4.401519 AGAACTGATGGAAAGATTGCCATG 59.598 41.667 9.94 0.00 44.60 3.66
1918 5698 3.705051 ACTGATGGAAAGATTGCCATGT 58.295 40.909 9.94 0.09 44.60 3.21
1919 5699 3.698040 ACTGATGGAAAGATTGCCATGTC 59.302 43.478 9.94 0.00 44.60 3.06
1920 5700 3.697542 CTGATGGAAAGATTGCCATGTCA 59.302 43.478 9.94 3.06 44.60 3.58
1921 5701 4.283337 TGATGGAAAGATTGCCATGTCAT 58.717 39.130 9.94 0.00 44.60 3.06
1922 5702 4.712829 TGATGGAAAGATTGCCATGTCATT 59.287 37.500 9.94 0.00 44.60 2.57
1923 5703 4.724074 TGGAAAGATTGCCATGTCATTC 57.276 40.909 0.00 0.00 0.00 2.67
1924 5704 4.087907 TGGAAAGATTGCCATGTCATTCA 58.912 39.130 1.94 0.00 0.00 2.57
1925 5705 4.527427 TGGAAAGATTGCCATGTCATTCAA 59.473 37.500 1.94 1.11 0.00 2.69
1926 5706 5.107133 GGAAAGATTGCCATGTCATTCAAG 58.893 41.667 1.94 0.00 0.00 3.02
1927 5707 5.337009 GGAAAGATTGCCATGTCATTCAAGT 60.337 40.000 1.94 0.00 0.00 3.16
1928 5708 6.127647 GGAAAGATTGCCATGTCATTCAAGTA 60.128 38.462 1.94 0.00 0.00 2.24
1929 5709 5.824904 AGATTGCCATGTCATTCAAGTAC 57.175 39.130 1.94 0.00 0.00 2.73
1930 5710 5.255687 AGATTGCCATGTCATTCAAGTACA 58.744 37.500 0.00 0.00 0.00 2.90
1931 5711 5.889853 AGATTGCCATGTCATTCAAGTACAT 59.110 36.000 0.00 0.00 34.22 2.29
1932 5712 4.968812 TGCCATGTCATTCAAGTACATG 57.031 40.909 7.52 7.52 46.44 3.21
1939 5719 6.499234 TGTCATTCAAGTACATGATGTTGG 57.501 37.500 2.29 0.00 32.07 3.77
1940 5720 6.237154 TGTCATTCAAGTACATGATGTTGGA 58.763 36.000 2.29 0.00 32.07 3.53
1941 5721 6.885918 TGTCATTCAAGTACATGATGTTGGAT 59.114 34.615 2.29 0.00 32.07 3.41
1942 5722 7.394077 TGTCATTCAAGTACATGATGTTGGATT 59.606 33.333 2.29 0.00 32.07 3.01
1943 5723 7.699391 GTCATTCAAGTACATGATGTTGGATTG 59.301 37.037 2.29 4.61 32.07 2.67
1944 5724 7.394077 TCATTCAAGTACATGATGTTGGATTGT 59.606 33.333 2.29 0.00 0.00 2.71
1945 5725 6.499234 TCAAGTACATGATGTTGGATTGTG 57.501 37.500 2.29 0.00 0.00 3.33
1946 5726 5.415389 TCAAGTACATGATGTTGGATTGTGG 59.585 40.000 2.29 0.00 0.00 4.17
1947 5727 5.178096 AGTACATGATGTTGGATTGTGGA 57.822 39.130 2.29 0.00 0.00 4.02
1948 5728 5.759059 AGTACATGATGTTGGATTGTGGAT 58.241 37.500 2.29 0.00 0.00 3.41
1949 5729 6.899089 AGTACATGATGTTGGATTGTGGATA 58.101 36.000 2.29 0.00 0.00 2.59
1950 5730 7.345691 AGTACATGATGTTGGATTGTGGATAA 58.654 34.615 2.29 0.00 0.00 1.75
1951 5731 8.000709 AGTACATGATGTTGGATTGTGGATAAT 58.999 33.333 2.29 0.00 0.00 1.28
1952 5732 9.283768 GTACATGATGTTGGATTGTGGATAATA 57.716 33.333 2.29 0.00 0.00 0.98
1953 5733 8.945195 ACATGATGTTGGATTGTGGATAATAT 57.055 30.769 0.00 0.00 0.00 1.28
1954 5734 9.370930 ACATGATGTTGGATTGTGGATAATATT 57.629 29.630 0.00 0.00 0.00 1.28
1957 5737 8.859090 TGATGTTGGATTGTGGATAATATTTCC 58.141 33.333 0.00 1.73 0.00 3.13
1958 5738 8.780616 ATGTTGGATTGTGGATAATATTTCCA 57.219 30.769 12.57 12.57 40.96 3.53
1959 5739 8.236585 TGTTGGATTGTGGATAATATTTCCAG 57.763 34.615 15.45 0.00 43.78 3.86
1960 5740 6.899393 TGGATTGTGGATAATATTTCCAGC 57.101 37.500 15.45 12.10 43.78 4.85
1961 5741 6.372104 TGGATTGTGGATAATATTTCCAGCA 58.628 36.000 15.45 13.68 43.78 4.41
1962 5742 7.011994 TGGATTGTGGATAATATTTCCAGCAT 58.988 34.615 15.45 11.72 43.78 3.79
1963 5743 8.169393 TGGATTGTGGATAATATTTCCAGCATA 58.831 33.333 15.45 10.03 43.78 3.14
1964 5744 9.193806 GGATTGTGGATAATATTTCCAGCATAT 57.806 33.333 15.45 12.48 43.78 1.78
1966 5746 9.758021 ATTGTGGATAATATTTCCAGCATATGA 57.242 29.630 6.97 6.67 43.78 2.15
1967 5747 8.565896 TGTGGATAATATTTCCAGCATATGAC 57.434 34.615 6.97 0.00 43.78 3.06
1968 5748 8.162746 TGTGGATAATATTTCCAGCATATGACA 58.837 33.333 6.97 8.07 43.78 3.58
1969 5749 9.013229 GTGGATAATATTTCCAGCATATGACAA 57.987 33.333 6.97 0.00 43.78 3.18
1970 5750 9.758021 TGGATAATATTTCCAGCATATGACAAT 57.242 29.630 6.97 0.00 38.35 2.71
1972 5752 9.926751 GATAATATTTCCAGCATATGACAATCG 57.073 33.333 6.97 0.00 0.00 3.34
1973 5753 7.984422 AATATTTCCAGCATATGACAATCGA 57.016 32.000 6.97 0.00 0.00 3.59
1974 5754 7.984422 ATATTTCCAGCATATGACAATCGAA 57.016 32.000 6.97 0.00 0.00 3.71
1975 5755 6.889301 ATTTCCAGCATATGACAATCGAAT 57.111 33.333 6.97 0.00 0.00 3.34
1976 5756 5.929697 TTCCAGCATATGACAATCGAATC 57.070 39.130 6.97 0.00 0.00 2.52
1977 5757 4.959723 TCCAGCATATGACAATCGAATCA 58.040 39.130 6.97 0.00 0.00 2.57
1978 5758 4.992951 TCCAGCATATGACAATCGAATCAG 59.007 41.667 6.97 0.00 0.00 2.90
1979 5759 4.992951 CCAGCATATGACAATCGAATCAGA 59.007 41.667 6.97 0.00 0.00 3.27
1980 5760 5.120363 CCAGCATATGACAATCGAATCAGAG 59.880 44.000 6.97 0.00 0.00 3.35
1981 5761 5.924825 CAGCATATGACAATCGAATCAGAGA 59.075 40.000 6.97 0.00 0.00 3.10
1982 5762 6.423001 CAGCATATGACAATCGAATCAGAGAA 59.577 38.462 6.97 0.00 0.00 2.87
1983 5763 7.117956 CAGCATATGACAATCGAATCAGAGAAT 59.882 37.037 6.97 0.00 0.00 2.40
1984 5764 7.331440 AGCATATGACAATCGAATCAGAGAATC 59.669 37.037 6.97 0.00 0.00 2.52
1985 5765 7.117379 GCATATGACAATCGAATCAGAGAATCA 59.883 37.037 6.97 0.00 37.82 2.57
1986 5766 6.841443 ATGACAATCGAATCAGAGAATCAC 57.159 37.500 0.00 0.00 37.82 3.06
1987 5767 5.111989 TGACAATCGAATCAGAGAATCACC 58.888 41.667 0.00 0.00 37.82 4.02
1988 5768 5.105187 TGACAATCGAATCAGAGAATCACCT 60.105 40.000 0.00 0.00 37.82 4.00
1989 5769 5.114780 ACAATCGAATCAGAGAATCACCTG 58.885 41.667 0.00 0.00 37.82 4.00
1990 5770 5.114780 CAATCGAATCAGAGAATCACCTGT 58.885 41.667 0.00 0.00 37.82 4.00
1991 5771 4.115401 TCGAATCAGAGAATCACCTGTG 57.885 45.455 3.38 0.00 37.82 3.66
1992 5772 3.511540 TCGAATCAGAGAATCACCTGTGT 59.488 43.478 0.00 0.00 37.82 3.72
1993 5773 3.615937 CGAATCAGAGAATCACCTGTGTG 59.384 47.826 0.00 0.00 44.18 3.82
1994 5774 3.623906 ATCAGAGAATCACCTGTGTGG 57.376 47.619 0.00 0.00 42.98 4.17
2005 5785 1.348064 CCTGTGTGGTAGGACCTTCA 58.652 55.000 0.00 0.00 39.58 3.02
2006 5786 1.276421 CCTGTGTGGTAGGACCTTCAG 59.724 57.143 0.00 0.01 39.58 3.02
2007 5787 2.248248 CTGTGTGGTAGGACCTTCAGA 58.752 52.381 0.00 0.00 39.58 3.27
2008 5788 2.632996 CTGTGTGGTAGGACCTTCAGAA 59.367 50.000 0.00 0.00 39.58 3.02
2009 5789 3.248024 TGTGTGGTAGGACCTTCAGAAT 58.752 45.455 0.00 0.00 39.58 2.40
2010 5790 3.260884 TGTGTGGTAGGACCTTCAGAATC 59.739 47.826 0.00 0.00 39.58 2.52
2011 5791 3.260884 GTGTGGTAGGACCTTCAGAATCA 59.739 47.826 0.00 0.00 39.58 2.57
2012 5792 3.260884 TGTGGTAGGACCTTCAGAATCAC 59.739 47.826 0.00 0.00 39.58 3.06
2013 5793 3.260884 GTGGTAGGACCTTCAGAATCACA 59.739 47.826 0.00 0.00 39.58 3.58
2014 5794 3.907474 TGGTAGGACCTTCAGAATCACAA 59.093 43.478 0.00 0.00 39.58 3.33
2015 5795 4.020218 TGGTAGGACCTTCAGAATCACAAG 60.020 45.833 0.00 0.00 39.58 3.16
2016 5796 3.064900 AGGACCTTCAGAATCACAAGC 57.935 47.619 0.00 0.00 0.00 4.01
2017 5797 2.641815 AGGACCTTCAGAATCACAAGCT 59.358 45.455 0.00 0.00 0.00 3.74
2018 5798 3.006247 GGACCTTCAGAATCACAAGCTC 58.994 50.000 0.00 0.00 0.00 4.09
2019 5799 3.006247 GACCTTCAGAATCACAAGCTCC 58.994 50.000 0.00 0.00 0.00 4.70
2020 5800 2.373169 ACCTTCAGAATCACAAGCTCCA 59.627 45.455 0.00 0.00 0.00 3.86
2021 5801 3.009916 ACCTTCAGAATCACAAGCTCCAT 59.990 43.478 0.00 0.00 0.00 3.41
2022 5802 3.377485 CCTTCAGAATCACAAGCTCCATG 59.623 47.826 0.00 0.00 0.00 3.66
2023 5803 3.986996 TCAGAATCACAAGCTCCATGA 57.013 42.857 0.00 0.00 0.00 3.07
2024 5804 4.290711 TCAGAATCACAAGCTCCATGAA 57.709 40.909 0.00 0.00 0.00 2.57
2025 5805 4.654915 TCAGAATCACAAGCTCCATGAAA 58.345 39.130 0.00 0.00 0.00 2.69
2026 5806 4.698780 TCAGAATCACAAGCTCCATGAAAG 59.301 41.667 0.00 0.00 0.00 2.62
2027 5807 4.458295 CAGAATCACAAGCTCCATGAAAGT 59.542 41.667 0.00 0.00 0.00 2.66
2028 5808 4.458295 AGAATCACAAGCTCCATGAAAGTG 59.542 41.667 0.00 0.00 0.00 3.16
2029 5809 3.213206 TCACAAGCTCCATGAAAGTGT 57.787 42.857 0.00 0.00 0.00 3.55
2030 5810 2.880268 TCACAAGCTCCATGAAAGTGTG 59.120 45.455 0.00 3.52 36.96 3.82
2031 5811 2.880268 CACAAGCTCCATGAAAGTGTGA 59.120 45.455 3.80 0.00 37.64 3.58
2032 5812 3.316029 CACAAGCTCCATGAAAGTGTGAA 59.684 43.478 3.80 0.00 37.64 3.18
2033 5813 3.567164 ACAAGCTCCATGAAAGTGTGAAG 59.433 43.478 0.00 0.00 0.00 3.02
2034 5814 3.498774 AGCTCCATGAAAGTGTGAAGT 57.501 42.857 0.00 0.00 0.00 3.01
2035 5815 3.144506 AGCTCCATGAAAGTGTGAAGTG 58.855 45.455 0.00 0.00 0.00 3.16
2036 5816 2.351157 GCTCCATGAAAGTGTGAAGTGC 60.351 50.000 0.00 0.00 0.00 4.40
2037 5817 2.880268 CTCCATGAAAGTGTGAAGTGCA 59.120 45.455 0.00 0.00 0.00 4.57
2038 5818 3.286353 TCCATGAAAGTGTGAAGTGCAA 58.714 40.909 0.00 0.00 0.00 4.08
2039 5819 3.698539 TCCATGAAAGTGTGAAGTGCAAA 59.301 39.130 0.00 0.00 0.00 3.68
2040 5820 4.341806 TCCATGAAAGTGTGAAGTGCAAAT 59.658 37.500 0.00 0.00 0.00 2.32
2041 5821 5.534278 TCCATGAAAGTGTGAAGTGCAAATA 59.466 36.000 0.00 0.00 0.00 1.40
2042 5822 6.040278 TCCATGAAAGTGTGAAGTGCAAATAA 59.960 34.615 0.00 0.00 0.00 1.40
2043 5823 6.144402 CCATGAAAGTGTGAAGTGCAAATAAC 59.856 38.462 0.00 0.00 0.00 1.89
2044 5824 6.201226 TGAAAGTGTGAAGTGCAAATAACA 57.799 33.333 0.00 0.00 0.00 2.41
2045 5825 6.804677 TGAAAGTGTGAAGTGCAAATAACAT 58.195 32.000 0.00 0.00 0.00 2.71
2046 5826 7.264221 TGAAAGTGTGAAGTGCAAATAACATT 58.736 30.769 0.00 0.00 0.00 2.71
2047 5827 8.409371 TGAAAGTGTGAAGTGCAAATAACATTA 58.591 29.630 0.00 0.00 0.00 1.90
2048 5828 8.574196 AAAGTGTGAAGTGCAAATAACATTAC 57.426 30.769 0.00 0.00 0.00 1.89
2049 5829 7.270757 AGTGTGAAGTGCAAATAACATTACA 57.729 32.000 0.00 0.00 0.00 2.41
2050 5830 7.885297 AGTGTGAAGTGCAAATAACATTACAT 58.115 30.769 0.00 0.00 0.00 2.29
2051 5831 7.809331 AGTGTGAAGTGCAAATAACATTACATG 59.191 33.333 0.00 0.00 0.00 3.21
2052 5832 7.807433 GTGTGAAGTGCAAATAACATTACATGA 59.193 33.333 0.00 0.00 0.00 3.07
2053 5833 8.022550 TGTGAAGTGCAAATAACATTACATGAG 58.977 33.333 0.00 0.00 0.00 2.90
2054 5834 7.485913 GTGAAGTGCAAATAACATTACATGAGG 59.514 37.037 0.00 0.00 0.00 3.86
2055 5835 5.894807 AGTGCAAATAACATTACATGAGGC 58.105 37.500 0.00 0.00 0.00 4.70
2056 5836 5.043248 GTGCAAATAACATTACATGAGGCC 58.957 41.667 0.00 0.00 0.00 5.19
2057 5837 4.955450 TGCAAATAACATTACATGAGGCCT 59.045 37.500 3.86 3.86 0.00 5.19
2058 5838 5.163530 TGCAAATAACATTACATGAGGCCTG 60.164 40.000 12.00 0.00 0.00 4.85
2059 5839 5.737063 GCAAATAACATTACATGAGGCCTGG 60.737 44.000 12.00 1.05 0.00 4.45
2060 5840 2.442236 AACATTACATGAGGCCTGGG 57.558 50.000 12.00 0.59 0.00 4.45
2061 5841 0.106519 ACATTACATGAGGCCTGGGC 60.107 55.000 12.00 13.15 41.06 5.36
2062 5842 0.106569 CATTACATGAGGCCTGGGCA 60.107 55.000 23.25 1.20 44.11 5.36
2063 5843 0.630673 ATTACATGAGGCCTGGGCAA 59.369 50.000 23.25 10.58 44.11 4.52
2064 5844 0.034186 TTACATGAGGCCTGGGCAAG 60.034 55.000 23.25 0.85 44.11 4.01
2065 5845 2.556840 TACATGAGGCCTGGGCAAGC 62.557 60.000 23.25 11.51 44.11 4.01
2066 5846 4.809496 ATGAGGCCTGGGCAAGCG 62.809 66.667 23.25 0.00 44.11 4.68
2068 5848 4.496336 GAGGCCTGGGCAAGCGAT 62.496 66.667 23.25 0.00 44.11 4.58
2069 5849 3.089874 AGGCCTGGGCAAGCGATA 61.090 61.111 23.25 0.00 44.11 2.92
2075 5855 1.678728 CCTGGGCAAGCGATACTTCAA 60.679 52.381 0.00 0.00 36.04 2.69
2138 5918 6.144078 AGGTAAACATCAAAGGACAAACAC 57.856 37.500 0.00 0.00 0.00 3.32
2139 5919 5.891551 AGGTAAACATCAAAGGACAAACACT 59.108 36.000 0.00 0.00 0.00 3.55
2140 5920 5.977129 GGTAAACATCAAAGGACAAACACTG 59.023 40.000 0.00 0.00 0.00 3.66
2142 5922 3.290710 ACATCAAAGGACAAACACTGCT 58.709 40.909 0.00 0.00 0.00 4.24
2143 5923 3.701040 ACATCAAAGGACAAACACTGCTT 59.299 39.130 0.00 0.00 0.00 3.91
2144 5924 4.887071 ACATCAAAGGACAAACACTGCTTA 59.113 37.500 0.00 0.00 0.00 3.09
2145 5925 5.009010 ACATCAAAGGACAAACACTGCTTAG 59.991 40.000 0.00 0.00 0.00 2.18
2146 5926 4.523083 TCAAAGGACAAACACTGCTTAGT 58.477 39.130 0.00 0.00 0.00 2.24
2147 5927 4.947388 TCAAAGGACAAACACTGCTTAGTT 59.053 37.500 0.00 0.00 0.00 2.24
2148 5928 4.900635 AAGGACAAACACTGCTTAGTTG 57.099 40.909 0.00 0.00 0.00 3.16
2149 5929 2.618709 AGGACAAACACTGCTTAGTTGC 59.381 45.455 0.00 0.00 0.00 4.17
2165 6620 9.184523 TGCTTAGTTGCAGTATAATTTGGTAAT 57.815 29.630 0.00 0.00 38.12 1.89
2239 6694 5.876357 AGGTTAGGTGCTGTAAATCTGAAA 58.124 37.500 0.00 0.00 0.00 2.69
2242 6697 3.740115 AGGTGCTGTAAATCTGAAACGT 58.260 40.909 0.00 0.00 0.00 3.99
2270 6725 7.859325 TTAGGAGCACACATCCTTAAATAAC 57.141 36.000 0.00 0.00 45.13 1.89
2271 6726 5.815581 AGGAGCACACATCCTTAAATAACA 58.184 37.500 0.00 0.00 45.13 2.41
2272 6727 5.648092 AGGAGCACACATCCTTAAATAACAC 59.352 40.000 0.00 0.00 45.13 3.32
2273 6728 5.648092 GGAGCACACATCCTTAAATAACACT 59.352 40.000 0.00 0.00 33.77 3.55
2274 6729 6.151144 GGAGCACACATCCTTAAATAACACTT 59.849 38.462 0.00 0.00 33.77 3.16
2275 6730 7.309194 GGAGCACACATCCTTAAATAACACTTT 60.309 37.037 0.00 0.00 33.77 2.66
2276 6731 7.951591 AGCACACATCCTTAAATAACACTTTT 58.048 30.769 0.00 0.00 0.00 2.27
2277 6732 7.867403 AGCACACATCCTTAAATAACACTTTTG 59.133 33.333 0.00 0.00 0.00 2.44
2278 6733 7.359181 GCACACATCCTTAAATAACACTTTTGC 60.359 37.037 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.817013 AATTGTTAGGCGGCCATGTG 59.183 50.000 23.09 0.00 0.00 3.21
68 69 0.739462 GCCAAAATTGTTAGGCGGCC 60.739 55.000 12.11 12.11 37.41 6.13
87 88 2.610232 CCTTGCCAAATTCCAAGAACGG 60.610 50.000 12.44 0.00 40.59 4.44
111 112 1.064060 GATGCAAACTCGCCACCATAC 59.936 52.381 0.00 0.00 0.00 2.39
123 124 5.703130 AGAGAACAAGACCTAAGATGCAAAC 59.297 40.000 0.00 0.00 0.00 2.93
173 174 3.200483 TCGCTCATCAATCATCACAAGG 58.800 45.455 0.00 0.00 0.00 3.61
213 214 2.483745 CAGGCAGCAGCAATCGTG 59.516 61.111 2.65 0.00 44.61 4.35
252 253 4.019858 TGATTCCGTCTCAGACTCTCAAT 58.980 43.478 2.61 0.00 0.00 2.57
406 428 5.598830 ACAGGTTAAGAGTCTTCAGTCTTCA 59.401 40.000 9.12 0.00 40.86 3.02
407 429 6.091718 ACAGGTTAAGAGTCTTCAGTCTTC 57.908 41.667 9.12 0.00 40.86 2.87
408 430 5.598830 TGACAGGTTAAGAGTCTTCAGTCTT 59.401 40.000 9.12 0.00 43.60 3.01
409 431 5.010213 GTGACAGGTTAAGAGTCTTCAGTCT 59.990 44.000 9.12 0.70 33.23 3.24
410 432 5.221263 TGTGACAGGTTAAGAGTCTTCAGTC 60.221 44.000 9.12 8.42 33.56 3.51
411 433 4.649674 TGTGACAGGTTAAGAGTCTTCAGT 59.350 41.667 9.12 0.00 33.56 3.41
412 434 4.985409 GTGTGACAGGTTAAGAGTCTTCAG 59.015 45.833 9.12 0.00 33.56 3.02
444 469 1.000283 CCGATCTTCCTCCCTGAATCG 60.000 57.143 0.00 0.00 0.00 3.34
563 727 1.752694 CGGGGAAATTCCGTGGCAT 60.753 57.895 5.87 0.00 42.33 4.40
606 770 4.134563 GTGGTTAGGCTTCAGAGTTTGAA 58.865 43.478 0.00 0.00 43.40 2.69
634 798 2.854777 GACTGATCGATCGTGTCAAAGG 59.145 50.000 29.92 11.06 34.92 3.11
679 844 0.608130 TGAGCTAGGTGACACGCATT 59.392 50.000 0.00 0.00 0.00 3.56
729 903 9.976511 CGGATTGACCTAATCTAATTGTACTTA 57.023 33.333 0.00 0.00 43.81 2.24
732 906 7.924412 TGACGGATTGACCTAATCTAATTGTAC 59.076 37.037 0.00 0.00 43.81 2.90
736 910 5.983720 CGTGACGGATTGACCTAATCTAATT 59.016 40.000 0.00 0.00 43.81 1.40
737 911 5.529791 CGTGACGGATTGACCTAATCTAAT 58.470 41.667 0.00 0.00 43.81 1.73
738 912 4.735578 GCGTGACGGATTGACCTAATCTAA 60.736 45.833 7.25 0.00 43.81 2.10
766 943 2.380084 TGGACTCGTCATTAACAGCC 57.620 50.000 0.00 0.00 0.00 4.85
800 980 3.702792 CCTAGGAACTCTTGAGACTCCA 58.297 50.000 1.05 0.00 41.75 3.86
878 4465 0.593128 AGGTTTGAACACAGATGCGC 59.407 50.000 0.00 0.00 0.00 6.09
905 4492 0.680061 GAGTTGAAGGACTGGGACGT 59.320 55.000 0.00 0.00 0.00 4.34
986 4574 4.041917 CCATGGCGCGTGCACTTT 62.042 61.111 24.18 0.47 45.35 2.66
1054 4643 4.048970 TGTCTACTAGCAGAAGAAGGGT 57.951 45.455 0.00 0.00 0.00 4.34
1071 4660 2.037136 GCTGACGCTTGCCATGTCT 61.037 57.895 0.00 0.00 33.81 3.41
1188 4777 4.954933 GCCGTATGCTCCCTTGAA 57.045 55.556 0.00 0.00 36.87 2.69
1283 4892 2.902608 TCCTCTTGCAGGGTAGAAGAA 58.097 47.619 0.00 0.00 43.67 2.52
1327 4945 2.890945 TCACTCGATGAAGGTGACTGAA 59.109 45.455 0.67 0.00 42.68 3.02
1328 4946 2.514803 TCACTCGATGAAGGTGACTGA 58.485 47.619 0.67 0.00 42.68 3.41
1370 4990 9.935241 TTACATACGGTACTTCTATACTCCTAG 57.065 37.037 0.00 0.00 0.00 3.02
1388 5140 6.478673 TGTTGAAGTGCCAGATATTACATACG 59.521 38.462 0.00 0.00 0.00 3.06
1389 5141 7.786178 TGTTGAAGTGCCAGATATTACATAC 57.214 36.000 0.00 0.00 0.00 2.39
1391 5143 6.830324 ACATGTTGAAGTGCCAGATATTACAT 59.170 34.615 0.00 0.00 0.00 2.29
1393 5145 6.683974 ACATGTTGAAGTGCCAGATATTAC 57.316 37.500 0.00 0.00 0.00 1.89
1396 5156 7.701539 TTTTACATGTTGAAGTGCCAGATAT 57.298 32.000 2.30 0.00 0.00 1.63
1400 5160 4.925054 CCATTTTACATGTTGAAGTGCCAG 59.075 41.667 2.30 0.00 0.00 4.85
1406 5166 4.244862 GTGCCCCATTTTACATGTTGAAG 58.755 43.478 2.30 0.00 0.00 3.02
1409 5169 2.354604 GGGTGCCCCATTTTACATGTTG 60.355 50.000 2.30 0.00 44.65 3.33
1425 5185 3.775654 CCCGGAGAGTCAGGGTGC 61.776 72.222 0.73 0.00 45.36 5.01
1429 5189 2.352032 GGACACCCGGAGAGTCAGG 61.352 68.421 18.30 0.00 34.04 3.86
1430 5190 0.972983 ATGGACACCCGGAGAGTCAG 60.973 60.000 18.30 0.00 34.04 3.51
1461 5230 5.556355 ACACATCTGCATACATTTCAGTG 57.444 39.130 0.00 0.00 0.00 3.66
1472 5251 9.394767 TCTAATAAACACATTACACATCTGCAT 57.605 29.630 0.00 0.00 0.00 3.96
1473 5252 8.785329 TCTAATAAACACATTACACATCTGCA 57.215 30.769 0.00 0.00 0.00 4.41
1474 5253 8.883731 ACTCTAATAAACACATTACACATCTGC 58.116 33.333 0.00 0.00 0.00 4.26
1479 5258 8.664798 GCATCACTCTAATAAACACATTACACA 58.335 33.333 0.00 0.00 0.00 3.72
1480 5259 8.664798 TGCATCACTCTAATAAACACATTACAC 58.335 33.333 0.00 0.00 0.00 2.90
1481 5260 8.785329 TGCATCACTCTAATAAACACATTACA 57.215 30.769 0.00 0.00 0.00 2.41
1482 5261 9.655769 CATGCATCACTCTAATAAACACATTAC 57.344 33.333 0.00 0.00 0.00 1.89
1483 5262 8.839343 CCATGCATCACTCTAATAAACACATTA 58.161 33.333 0.00 0.00 0.00 1.90
1484 5263 7.340232 ACCATGCATCACTCTAATAAACACATT 59.660 33.333 0.00 0.00 0.00 2.71
1485 5264 6.830324 ACCATGCATCACTCTAATAAACACAT 59.170 34.615 0.00 0.00 0.00 3.21
1486 5265 6.093909 CACCATGCATCACTCTAATAAACACA 59.906 38.462 0.00 0.00 0.00 3.72
1487 5266 6.489675 CACCATGCATCACTCTAATAAACAC 58.510 40.000 0.00 0.00 0.00 3.32
1488 5267 5.066375 GCACCATGCATCACTCTAATAAACA 59.934 40.000 0.00 0.00 44.26 2.83
1538 5317 0.529378 GCAAATGGACAAGAGCCCAG 59.471 55.000 0.00 0.00 35.67 4.45
1561 5340 9.074443 CACATCACGAATCTGATCATATTCTAG 57.926 37.037 23.65 17.72 31.29 2.43
1577 5356 9.463443 CACTATTCTTATCATACACATCACGAA 57.537 33.333 0.00 0.00 0.00 3.85
1697 5476 6.431198 TGAAGAACGGGATATTTAAACTGC 57.569 37.500 0.00 0.00 0.00 4.40
1753 5532 2.827755 TCCATCAGCTACCACCTAACA 58.172 47.619 0.00 0.00 0.00 2.41
1802 5581 2.919602 TGACTAGGAGGGGCTGAAAAAT 59.080 45.455 0.00 0.00 0.00 1.82
1847 5627 1.376424 CTCAGCATCACGGCACCTT 60.376 57.895 0.00 0.00 35.83 3.50
1848 5628 2.267006 CTCAGCATCACGGCACCT 59.733 61.111 0.00 0.00 35.83 4.00
1849 5629 2.046892 ACTCAGCATCACGGCACC 60.047 61.111 0.00 0.00 35.83 5.01
1850 5630 2.393768 CCACTCAGCATCACGGCAC 61.394 63.158 0.00 0.00 35.83 5.01
1851 5631 2.046988 CCACTCAGCATCACGGCA 60.047 61.111 0.00 0.00 35.83 5.69
1855 5635 1.415659 AGCTATCCCACTCAGCATCAC 59.584 52.381 0.00 0.00 37.78 3.06
1856 5636 1.690893 GAGCTATCCCACTCAGCATCA 59.309 52.381 0.00 0.00 37.78 3.07
1857 5637 1.969923 AGAGCTATCCCACTCAGCATC 59.030 52.381 0.00 0.00 37.78 3.91
1858 5638 2.100128 AGAGCTATCCCACTCAGCAT 57.900 50.000 0.00 0.00 37.78 3.79
1859 5639 2.755952 TAGAGCTATCCCACTCAGCA 57.244 50.000 0.00 0.00 37.78 4.41
1860 5640 3.161067 TGATAGAGCTATCCCACTCAGC 58.839 50.000 13.39 0.00 40.84 4.26
1861 5641 5.999205 ATTGATAGAGCTATCCCACTCAG 57.001 43.478 13.39 0.00 40.84 3.35
1862 5642 6.327365 TGAAATTGATAGAGCTATCCCACTCA 59.673 38.462 13.39 9.10 40.84 3.41
1863 5643 6.763355 TGAAATTGATAGAGCTATCCCACTC 58.237 40.000 13.39 7.18 40.84 3.51
1864 5644 6.239829 CCTGAAATTGATAGAGCTATCCCACT 60.240 42.308 13.39 0.00 40.84 4.00
1865 5645 5.936956 CCTGAAATTGATAGAGCTATCCCAC 59.063 44.000 13.39 3.85 40.84 4.61
1866 5646 5.846164 TCCTGAAATTGATAGAGCTATCCCA 59.154 40.000 13.39 2.91 40.84 4.37
1867 5647 6.169800 GTCCTGAAATTGATAGAGCTATCCC 58.830 44.000 13.39 1.49 40.84 3.85
1868 5648 6.648725 GTGTCCTGAAATTGATAGAGCTATCC 59.351 42.308 13.39 0.90 40.84 2.59
1869 5649 7.212976 TGTGTCCTGAAATTGATAGAGCTATC 58.787 38.462 9.95 9.95 41.67 2.08
1870 5650 7.070447 TCTGTGTCCTGAAATTGATAGAGCTAT 59.930 37.037 0.00 0.00 0.00 2.97
1871 5651 6.381133 TCTGTGTCCTGAAATTGATAGAGCTA 59.619 38.462 0.00 0.00 0.00 3.32
1872 5652 5.188555 TCTGTGTCCTGAAATTGATAGAGCT 59.811 40.000 0.00 0.00 0.00 4.09
1873 5653 5.423015 TCTGTGTCCTGAAATTGATAGAGC 58.577 41.667 0.00 0.00 0.00 4.09
1874 5654 7.064371 CAGTTCTGTGTCCTGAAATTGATAGAG 59.936 40.741 0.00 0.00 31.36 2.43
1875 5655 6.875726 CAGTTCTGTGTCCTGAAATTGATAGA 59.124 38.462 0.00 0.00 31.36 1.98
1876 5656 6.875726 TCAGTTCTGTGTCCTGAAATTGATAG 59.124 38.462 0.00 0.00 32.55 2.08
1877 5657 6.768483 TCAGTTCTGTGTCCTGAAATTGATA 58.232 36.000 0.00 0.00 32.55 2.15
1878 5658 5.624159 TCAGTTCTGTGTCCTGAAATTGAT 58.376 37.500 0.00 0.00 32.55 2.57
1879 5659 5.034852 TCAGTTCTGTGTCCTGAAATTGA 57.965 39.130 0.00 0.00 32.55 2.57
1880 5660 5.335426 CCATCAGTTCTGTGTCCTGAAATTG 60.335 44.000 0.00 0.00 38.61 2.32
1881 5661 4.763793 CCATCAGTTCTGTGTCCTGAAATT 59.236 41.667 0.00 0.00 38.61 1.82
1882 5662 4.042062 TCCATCAGTTCTGTGTCCTGAAAT 59.958 41.667 0.00 0.00 38.61 2.17
1883 5663 3.390967 TCCATCAGTTCTGTGTCCTGAAA 59.609 43.478 0.00 0.00 38.61 2.69
1884 5664 2.972021 TCCATCAGTTCTGTGTCCTGAA 59.028 45.455 0.00 0.00 38.61 3.02
1885 5665 2.608623 TCCATCAGTTCTGTGTCCTGA 58.391 47.619 0.00 0.00 39.38 3.86
1886 5666 3.407424 TTCCATCAGTTCTGTGTCCTG 57.593 47.619 0.00 0.00 0.00 3.86
1887 5667 3.648067 TCTTTCCATCAGTTCTGTGTCCT 59.352 43.478 0.00 0.00 0.00 3.85
1888 5668 4.008074 TCTTTCCATCAGTTCTGTGTCC 57.992 45.455 0.00 0.00 0.00 4.02
1889 5669 5.618640 GCAATCTTTCCATCAGTTCTGTGTC 60.619 44.000 0.00 0.00 0.00 3.67
1890 5670 4.217118 GCAATCTTTCCATCAGTTCTGTGT 59.783 41.667 0.00 0.00 0.00 3.72
1891 5671 4.380233 GGCAATCTTTCCATCAGTTCTGTG 60.380 45.833 0.00 0.00 0.00 3.66
1892 5672 3.760684 GGCAATCTTTCCATCAGTTCTGT 59.239 43.478 0.00 0.00 0.00 3.41
1893 5673 3.760151 TGGCAATCTTTCCATCAGTTCTG 59.240 43.478 0.00 0.00 0.00 3.02
1894 5674 4.038271 TGGCAATCTTTCCATCAGTTCT 57.962 40.909 0.00 0.00 0.00 3.01
1895 5675 4.159135 ACATGGCAATCTTTCCATCAGTTC 59.841 41.667 0.00 0.00 40.88 3.01
1896 5676 4.091549 ACATGGCAATCTTTCCATCAGTT 58.908 39.130 0.00 0.00 40.88 3.16
1897 5677 3.698040 GACATGGCAATCTTTCCATCAGT 59.302 43.478 0.00 0.00 40.88 3.41
1898 5678 3.697542 TGACATGGCAATCTTTCCATCAG 59.302 43.478 0.00 0.00 40.88 2.90
1899 5679 3.699413 TGACATGGCAATCTTTCCATCA 58.301 40.909 0.00 0.00 40.88 3.07
1900 5680 4.931661 ATGACATGGCAATCTTTCCATC 57.068 40.909 4.70 0.00 40.88 3.51
1901 5681 4.712829 TGAATGACATGGCAATCTTTCCAT 59.287 37.500 17.47 0.00 43.45 3.41
1902 5682 4.087907 TGAATGACATGGCAATCTTTCCA 58.912 39.130 17.47 0.00 36.70 3.53
1903 5683 4.724074 TGAATGACATGGCAATCTTTCC 57.276 40.909 17.47 0.00 31.32 3.13
1904 5684 5.717119 ACTTGAATGACATGGCAATCTTTC 58.283 37.500 17.47 11.45 32.40 2.62
1905 5685 5.733620 ACTTGAATGACATGGCAATCTTT 57.266 34.783 17.47 1.05 0.00 2.52
1906 5686 5.711506 TGTACTTGAATGACATGGCAATCTT 59.288 36.000 17.47 1.46 0.00 2.40
1907 5687 5.255687 TGTACTTGAATGACATGGCAATCT 58.744 37.500 17.47 0.22 0.00 2.40
1908 5688 5.565592 TGTACTTGAATGACATGGCAATC 57.434 39.130 4.70 7.72 0.00 2.67
1909 5689 5.653330 TCATGTACTTGAATGACATGGCAAT 59.347 36.000 4.70 0.00 46.79 3.56
1910 5690 5.008980 TCATGTACTTGAATGACATGGCAA 58.991 37.500 4.70 0.00 46.79 4.52
1911 5691 4.587891 TCATGTACTTGAATGACATGGCA 58.412 39.130 2.18 2.18 46.79 4.92
1912 5692 5.066893 ACATCATGTACTTGAATGACATGGC 59.933 40.000 14.70 0.00 46.79 4.40
1913 5693 6.688637 ACATCATGTACTTGAATGACATGG 57.311 37.500 14.70 6.88 46.79 3.66
1915 5695 6.885918 TCCAACATCATGTACTTGAATGACAT 59.114 34.615 14.70 0.00 35.71 3.06
1916 5696 6.237154 TCCAACATCATGTACTTGAATGACA 58.763 36.000 14.70 3.91 35.71 3.58
1917 5697 6.741992 TCCAACATCATGTACTTGAATGAC 57.258 37.500 14.70 0.00 35.71 3.06
1918 5698 7.394077 ACAATCCAACATCATGTACTTGAATGA 59.606 33.333 14.70 5.87 37.23 2.57
1919 5699 7.486870 CACAATCCAACATCATGTACTTGAATG 59.513 37.037 14.70 14.39 0.00 2.67
1920 5700 7.363181 CCACAATCCAACATCATGTACTTGAAT 60.363 37.037 14.70 4.63 0.00 2.57
1921 5701 6.072008 CCACAATCCAACATCATGTACTTGAA 60.072 38.462 14.70 0.00 0.00 2.69
1922 5702 5.415389 CCACAATCCAACATCATGTACTTGA 59.585 40.000 13.28 13.28 0.00 3.02
1923 5703 5.415389 TCCACAATCCAACATCATGTACTTG 59.585 40.000 2.36 2.36 0.00 3.16
1924 5704 5.569355 TCCACAATCCAACATCATGTACTT 58.431 37.500 0.00 0.00 0.00 2.24
1925 5705 5.178096 TCCACAATCCAACATCATGTACT 57.822 39.130 0.00 0.00 0.00 2.73
1926 5706 7.566760 TTATCCACAATCCAACATCATGTAC 57.433 36.000 0.00 0.00 0.00 2.90
1928 5708 8.945195 ATATTATCCACAATCCAACATCATGT 57.055 30.769 0.00 0.00 0.00 3.21
1931 5711 8.859090 GGAAATATTATCCACAATCCAACATCA 58.141 33.333 10.18 0.00 36.92 3.07
1932 5712 8.859090 TGGAAATATTATCCACAATCCAACATC 58.141 33.333 12.57 0.00 41.98 3.06
1933 5713 8.780616 TGGAAATATTATCCACAATCCAACAT 57.219 30.769 12.57 0.00 41.98 2.71
1934 5714 7.201902 GCTGGAAATATTATCCACAATCCAACA 60.202 37.037 12.57 0.00 41.98 3.33
1935 5715 7.147976 GCTGGAAATATTATCCACAATCCAAC 58.852 38.462 12.57 2.18 41.98 3.77
1936 5716 6.838090 TGCTGGAAATATTATCCACAATCCAA 59.162 34.615 12.57 0.00 41.98 3.53
1937 5717 6.372104 TGCTGGAAATATTATCCACAATCCA 58.628 36.000 12.57 7.76 41.98 3.41
1938 5718 6.899393 TGCTGGAAATATTATCCACAATCC 57.101 37.500 12.57 4.14 41.98 3.01
1940 5720 9.758021 TCATATGCTGGAAATATTATCCACAAT 57.242 29.630 12.57 11.48 41.98 2.71
1941 5721 9.013229 GTCATATGCTGGAAATATTATCCACAA 57.987 33.333 12.57 6.94 41.98 3.33
1942 5722 8.162746 TGTCATATGCTGGAAATATTATCCACA 58.837 33.333 12.57 14.23 41.98 4.17
1943 5723 8.565896 TGTCATATGCTGGAAATATTATCCAC 57.434 34.615 12.57 10.85 41.98 4.02
1944 5724 9.758021 ATTGTCATATGCTGGAAATATTATCCA 57.242 29.630 14.66 14.66 44.58 3.41
1946 5726 9.926751 CGATTGTCATATGCTGGAAATATTATC 57.073 33.333 0.00 0.00 0.00 1.75
1947 5727 9.671279 TCGATTGTCATATGCTGGAAATATTAT 57.329 29.630 0.00 0.00 0.00 1.28
1948 5728 9.500785 TTCGATTGTCATATGCTGGAAATATTA 57.499 29.630 0.00 0.00 0.00 0.98
1949 5729 7.984422 TCGATTGTCATATGCTGGAAATATT 57.016 32.000 0.00 0.00 0.00 1.28
1950 5730 7.984422 TTCGATTGTCATATGCTGGAAATAT 57.016 32.000 0.00 0.00 0.00 1.28
1951 5731 7.661027 TGATTCGATTGTCATATGCTGGAAATA 59.339 33.333 0.00 0.00 0.00 1.40
1952 5732 6.487668 TGATTCGATTGTCATATGCTGGAAAT 59.512 34.615 0.00 0.00 0.00 2.17
1953 5733 5.821995 TGATTCGATTGTCATATGCTGGAAA 59.178 36.000 0.00 0.00 0.00 3.13
1954 5734 5.367302 TGATTCGATTGTCATATGCTGGAA 58.633 37.500 0.00 0.00 0.00 3.53
1955 5735 4.959723 TGATTCGATTGTCATATGCTGGA 58.040 39.130 0.00 0.00 0.00 3.86
1956 5736 4.992951 TCTGATTCGATTGTCATATGCTGG 59.007 41.667 0.00 0.00 0.00 4.85
1957 5737 5.924825 TCTCTGATTCGATTGTCATATGCTG 59.075 40.000 0.00 0.00 0.00 4.41
1958 5738 6.094193 TCTCTGATTCGATTGTCATATGCT 57.906 37.500 0.00 0.00 0.00 3.79
1959 5739 6.775939 TTCTCTGATTCGATTGTCATATGC 57.224 37.500 0.00 0.00 0.00 3.14
1960 5740 8.433893 GTGATTCTCTGATTCGATTGTCATATG 58.566 37.037 0.00 0.00 0.00 1.78
1961 5741 7.601886 GGTGATTCTCTGATTCGATTGTCATAT 59.398 37.037 0.00 0.00 0.00 1.78
1962 5742 6.925718 GGTGATTCTCTGATTCGATTGTCATA 59.074 38.462 0.00 0.00 0.00 2.15
1963 5743 5.757320 GGTGATTCTCTGATTCGATTGTCAT 59.243 40.000 0.00 0.00 0.00 3.06
1964 5744 5.105187 AGGTGATTCTCTGATTCGATTGTCA 60.105 40.000 0.00 0.00 0.00 3.58
1965 5745 5.233902 CAGGTGATTCTCTGATTCGATTGTC 59.766 44.000 0.00 0.00 33.11 3.18
1966 5746 5.114780 CAGGTGATTCTCTGATTCGATTGT 58.885 41.667 0.00 0.00 33.11 2.71
1967 5747 5.006455 CACAGGTGATTCTCTGATTCGATTG 59.994 44.000 12.30 0.00 35.20 2.67
1968 5748 5.114780 CACAGGTGATTCTCTGATTCGATT 58.885 41.667 12.30 0.00 35.20 3.34
1969 5749 4.161189 ACACAGGTGATTCTCTGATTCGAT 59.839 41.667 6.40 0.00 35.20 3.59
1970 5750 3.511540 ACACAGGTGATTCTCTGATTCGA 59.488 43.478 6.40 0.00 35.20 3.71
1971 5751 3.854666 ACACAGGTGATTCTCTGATTCG 58.145 45.455 6.40 0.00 35.20 3.34
1986 5766 1.276421 CTGAAGGTCCTACCACACAGG 59.724 57.143 0.00 0.00 41.95 4.00
1987 5767 2.248248 TCTGAAGGTCCTACCACACAG 58.752 52.381 0.00 5.17 41.95 3.66
1988 5768 2.391926 TCTGAAGGTCCTACCACACA 57.608 50.000 0.00 0.00 41.95 3.72
1989 5769 3.260884 TGATTCTGAAGGTCCTACCACAC 59.739 47.826 0.00 0.00 41.95 3.82
1990 5770 3.260884 GTGATTCTGAAGGTCCTACCACA 59.739 47.826 0.00 0.00 41.95 4.17
1991 5771 3.260884 TGTGATTCTGAAGGTCCTACCAC 59.739 47.826 0.00 0.00 41.95 4.16
1992 5772 3.516586 TGTGATTCTGAAGGTCCTACCA 58.483 45.455 0.00 0.00 41.95 3.25
1993 5773 4.508662 CTTGTGATTCTGAAGGTCCTACC 58.491 47.826 0.00 0.00 38.99 3.18
1994 5774 3.935828 GCTTGTGATTCTGAAGGTCCTAC 59.064 47.826 0.00 0.00 0.00 3.18
1995 5775 3.840666 AGCTTGTGATTCTGAAGGTCCTA 59.159 43.478 0.00 0.00 0.00 2.94
1996 5776 2.641815 AGCTTGTGATTCTGAAGGTCCT 59.358 45.455 0.00 0.00 0.00 3.85
1997 5777 3.006247 GAGCTTGTGATTCTGAAGGTCC 58.994 50.000 12.63 0.00 37.97 4.46
1998 5778 3.006247 GGAGCTTGTGATTCTGAAGGTC 58.994 50.000 14.20 14.20 41.43 3.85
1999 5779 2.373169 TGGAGCTTGTGATTCTGAAGGT 59.627 45.455 0.00 0.00 0.00 3.50
2000 5780 3.063510 TGGAGCTTGTGATTCTGAAGG 57.936 47.619 0.00 0.00 0.00 3.46
2001 5781 4.259356 TCATGGAGCTTGTGATTCTGAAG 58.741 43.478 0.00 0.00 0.00 3.02
2002 5782 4.290711 TCATGGAGCTTGTGATTCTGAA 57.709 40.909 0.00 0.00 0.00 3.02
2003 5783 3.986996 TCATGGAGCTTGTGATTCTGA 57.013 42.857 0.00 0.00 0.00 3.27
2004 5784 4.458295 ACTTTCATGGAGCTTGTGATTCTG 59.542 41.667 0.00 0.00 0.00 3.02
2005 5785 4.458295 CACTTTCATGGAGCTTGTGATTCT 59.542 41.667 0.00 0.00 0.00 2.40
2006 5786 4.217118 ACACTTTCATGGAGCTTGTGATTC 59.783 41.667 0.00 0.00 0.00 2.52
2007 5787 4.022589 CACACTTTCATGGAGCTTGTGATT 60.023 41.667 3.80 0.00 0.00 2.57
2008 5788 3.504906 CACACTTTCATGGAGCTTGTGAT 59.495 43.478 3.80 0.00 0.00 3.06
2009 5789 2.880268 CACACTTTCATGGAGCTTGTGA 59.120 45.455 3.80 0.00 0.00 3.58
2010 5790 2.880268 TCACACTTTCATGGAGCTTGTG 59.120 45.455 3.52 3.52 0.00 3.33
2011 5791 3.213206 TCACACTTTCATGGAGCTTGT 57.787 42.857 0.00 0.00 0.00 3.16
2012 5792 3.567164 ACTTCACACTTTCATGGAGCTTG 59.433 43.478 0.00 0.00 0.00 4.01
2013 5793 3.567164 CACTTCACACTTTCATGGAGCTT 59.433 43.478 0.00 0.00 0.00 3.74
2014 5794 3.144506 CACTTCACACTTTCATGGAGCT 58.855 45.455 0.00 0.00 0.00 4.09
2015 5795 2.351157 GCACTTCACACTTTCATGGAGC 60.351 50.000 0.00 0.00 0.00 4.70
2016 5796 2.880268 TGCACTTCACACTTTCATGGAG 59.120 45.455 0.00 0.00 0.00 3.86
2017 5797 2.929641 TGCACTTCACACTTTCATGGA 58.070 42.857 0.00 0.00 0.00 3.41
2018 5798 3.713858 TTGCACTTCACACTTTCATGG 57.286 42.857 0.00 0.00 0.00 3.66
2019 5799 6.696583 TGTTATTTGCACTTCACACTTTCATG 59.303 34.615 0.00 0.00 0.00 3.07
2020 5800 6.804677 TGTTATTTGCACTTCACACTTTCAT 58.195 32.000 0.00 0.00 0.00 2.57
2021 5801 6.201226 TGTTATTTGCACTTCACACTTTCA 57.799 33.333 0.00 0.00 0.00 2.69
2022 5802 7.698836 AATGTTATTTGCACTTCACACTTTC 57.301 32.000 0.00 0.00 0.00 2.62
2023 5803 8.194104 TGTAATGTTATTTGCACTTCACACTTT 58.806 29.630 0.00 0.00 0.00 2.66
2024 5804 7.711846 TGTAATGTTATTTGCACTTCACACTT 58.288 30.769 0.00 0.00 0.00 3.16
2025 5805 7.270757 TGTAATGTTATTTGCACTTCACACT 57.729 32.000 0.00 0.00 0.00 3.55
2026 5806 7.807433 TCATGTAATGTTATTTGCACTTCACAC 59.193 33.333 0.00 0.00 46.80 3.82
2027 5807 7.880105 TCATGTAATGTTATTTGCACTTCACA 58.120 30.769 0.00 0.00 46.80 3.58
2028 5808 7.485913 CCTCATGTAATGTTATTTGCACTTCAC 59.514 37.037 0.00 0.00 46.80 3.18
2029 5809 7.537715 CCTCATGTAATGTTATTTGCACTTCA 58.462 34.615 0.00 0.00 46.80 3.02
2030 5810 6.473455 GCCTCATGTAATGTTATTTGCACTTC 59.527 38.462 0.00 0.00 46.80 3.01
2031 5811 6.332630 GCCTCATGTAATGTTATTTGCACTT 58.667 36.000 0.00 0.00 46.80 3.16
2032 5812 5.163519 GGCCTCATGTAATGTTATTTGCACT 60.164 40.000 0.00 0.00 46.80 4.40
2033 5813 5.043248 GGCCTCATGTAATGTTATTTGCAC 58.957 41.667 0.00 0.00 46.80 4.57
2034 5814 4.955450 AGGCCTCATGTAATGTTATTTGCA 59.045 37.500 0.00 0.00 46.80 4.08
2035 5815 5.284079 CAGGCCTCATGTAATGTTATTTGC 58.716 41.667 0.00 0.00 46.80 3.68
2036 5816 5.221303 CCCAGGCCTCATGTAATGTTATTTG 60.221 44.000 0.00 0.00 46.80 2.32
2037 5817 4.895297 CCCAGGCCTCATGTAATGTTATTT 59.105 41.667 0.00 0.00 46.80 1.40
2038 5818 4.473444 CCCAGGCCTCATGTAATGTTATT 58.527 43.478 0.00 0.00 46.80 1.40
2039 5819 3.751893 GCCCAGGCCTCATGTAATGTTAT 60.752 47.826 0.00 0.00 39.44 1.89
2040 5820 2.422803 GCCCAGGCCTCATGTAATGTTA 60.423 50.000 0.00 0.00 39.44 2.41
2041 5821 1.686115 GCCCAGGCCTCATGTAATGTT 60.686 52.381 0.00 0.00 39.44 2.71
2042 5822 0.106519 GCCCAGGCCTCATGTAATGT 60.107 55.000 0.00 0.00 39.44 2.71
2043 5823 0.106569 TGCCCAGGCCTCATGTAATG 60.107 55.000 0.00 0.00 43.01 1.90
2044 5824 0.630673 TTGCCCAGGCCTCATGTAAT 59.369 50.000 0.00 0.00 41.09 1.89
2045 5825 0.034186 CTTGCCCAGGCCTCATGTAA 60.034 55.000 0.00 0.00 41.09 2.41
2046 5826 1.609239 CTTGCCCAGGCCTCATGTA 59.391 57.895 0.00 0.00 41.09 2.29
2047 5827 2.357836 CTTGCCCAGGCCTCATGT 59.642 61.111 0.00 0.00 41.09 3.21
2048 5828 3.145551 GCTTGCCCAGGCCTCATG 61.146 66.667 0.00 1.39 41.09 3.07
2049 5829 4.809496 CGCTTGCCCAGGCCTCAT 62.809 66.667 0.00 0.00 41.09 2.90
2051 5831 3.106986 TATCGCTTGCCCAGGCCTC 62.107 63.158 0.00 0.00 41.09 4.70
2052 5832 3.089874 TATCGCTTGCCCAGGCCT 61.090 61.111 0.00 0.00 41.09 5.19
2053 5833 2.893682 AAGTATCGCTTGCCCAGGCC 62.894 60.000 6.14 0.00 41.09 5.19
2054 5834 1.440145 GAAGTATCGCTTGCCCAGGC 61.440 60.000 0.38 0.38 37.59 4.85
2055 5835 0.107703 TGAAGTATCGCTTGCCCAGG 60.108 55.000 0.00 0.00 37.59 4.45
2056 5836 1.667724 CTTGAAGTATCGCTTGCCCAG 59.332 52.381 0.00 0.00 37.59 4.45
2057 5837 1.003118 ACTTGAAGTATCGCTTGCCCA 59.997 47.619 0.00 0.00 37.59 5.36
2058 5838 1.739067 ACTTGAAGTATCGCTTGCCC 58.261 50.000 0.00 0.00 37.59 5.36
2059 5839 3.552294 GTCTACTTGAAGTATCGCTTGCC 59.448 47.826 5.39 0.00 37.59 4.52
2060 5840 4.266502 CAGTCTACTTGAAGTATCGCTTGC 59.733 45.833 5.39 0.00 37.59 4.01
2061 5841 4.266502 GCAGTCTACTTGAAGTATCGCTTG 59.733 45.833 5.39 2.63 37.59 4.01
2062 5842 4.158764 AGCAGTCTACTTGAAGTATCGCTT 59.841 41.667 5.39 0.00 40.76 4.68
2063 5843 3.697045 AGCAGTCTACTTGAAGTATCGCT 59.303 43.478 5.39 8.46 29.08 4.93
2064 5844 3.794028 CAGCAGTCTACTTGAAGTATCGC 59.206 47.826 5.39 6.45 29.08 4.58
2065 5845 4.142359 ACCAGCAGTCTACTTGAAGTATCG 60.142 45.833 5.39 0.00 29.08 2.92
2066 5846 5.331876 ACCAGCAGTCTACTTGAAGTATC 57.668 43.478 5.39 2.97 29.08 2.24
2067 5847 6.852420 TTACCAGCAGTCTACTTGAAGTAT 57.148 37.500 5.39 0.00 29.08 2.12
2068 5848 6.492429 TCTTTACCAGCAGTCTACTTGAAGTA 59.508 38.462 4.81 4.81 0.00 2.24
2069 5849 5.304614 TCTTTACCAGCAGTCTACTTGAAGT 59.695 40.000 2.37 2.37 0.00 3.01
2075 5855 7.224297 TCAATTTTCTTTACCAGCAGTCTACT 58.776 34.615 0.00 0.00 0.00 2.57
2139 5919 8.568676 TTACCAAATTATACTGCAACTAAGCA 57.431 30.769 0.00 0.00 43.35 3.91
2140 5920 9.665264 GATTACCAAATTATACTGCAACTAAGC 57.335 33.333 0.00 0.00 0.00 3.09
2145 5925 9.893305 GGTATGATTACCAAATTATACTGCAAC 57.107 33.333 10.82 0.00 46.24 4.17
2165 6620 5.163343 GGCAACAACTCTAGGTATGGTATGA 60.163 44.000 0.00 0.00 0.00 2.15
2179 6634 4.922791 GTCGCAAGGCAACAACTC 57.077 55.556 0.00 0.00 45.31 3.01
2239 6694 2.831685 TGTGTGCTCCTAATCAACGT 57.168 45.000 0.00 0.00 0.00 3.99
2242 6697 4.574674 AAGGATGTGTGCTCCTAATCAA 57.425 40.909 0.00 0.00 42.42 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.