Multiple sequence alignment - TraesCS1A01G172900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G172900 chr1A 100.000 3671 0 0 1 3671 308807552 308803882 0.000000e+00 6780.0
1 TraesCS1A01G172900 chr1D 93.702 2366 76 30 646 2953 236856046 236858396 0.000000e+00 3476.0
2 TraesCS1A01G172900 chr1D 88.764 178 12 6 3 179 236855832 236856002 1.030000e-50 211.0
3 TraesCS1A01G172900 chr1D 92.683 82 3 1 564 642 236855983 236856064 8.330000e-22 115.0
4 TraesCS1A01G172900 chr1D 100.000 29 0 0 2959 2987 236858420 236858448 2.000000e-03 54.7
5 TraesCS1A01G172900 chr1B 93.786 2253 74 16 646 2839 342322121 342324366 0.000000e+00 3325.0
6 TraesCS1A01G172900 chr1B 91.228 114 6 2 70 179 342321967 342322080 6.350000e-33 152.0
7 TraesCS1A01G172900 chr1B 96.296 81 3 0 2873 2953 342326873 342326953 2.300000e-27 134.0
8 TraesCS1A01G172900 chr1B 94.937 79 4 0 564 642 342322061 342322139 1.380000e-24 124.0
9 TraesCS1A01G172900 chr2A 98.636 660 9 0 3012 3671 159629325 159629984 0.000000e+00 1170.0
10 TraesCS1A01G172900 chr2B 98.343 664 11 0 3008 3671 451915917 451916580 0.000000e+00 1166.0
11 TraesCS1A01G172900 chr2B 97.126 661 16 1 3013 3670 134567580 134566920 0.000000e+00 1112.0
12 TraesCS1A01G172900 chr2B 96.018 653 26 0 3018 3670 453073197 453072545 0.000000e+00 1062.0
13 TraesCS1A01G172900 chr4A 98.485 660 10 0 3012 3671 598443436 598444095 0.000000e+00 1164.0
14 TraesCS1A01G172900 chr6B 97.428 661 14 1 3011 3671 124645862 124645205 0.000000e+00 1123.0
15 TraesCS1A01G172900 chr6A 96.358 659 24 0 3013 3671 598880414 598879756 0.000000e+00 1085.0
16 TraesCS1A01G172900 chr4B 96.330 654 24 0 3018 3671 520272840 520273493 0.000000e+00 1075.0
17 TraesCS1A01G172900 chr7A 95.448 659 30 0 3013 3671 73770137 73769479 0.000000e+00 1051.0
18 TraesCS1A01G172900 chr7A 86.528 386 38 4 176 547 467848456 467848841 2.640000e-111 412.0
19 TraesCS1A01G172900 chr3A 81.081 851 136 18 1109 1952 143533245 143534077 0.000000e+00 656.0
20 TraesCS1A01G172900 chr3A 79.903 617 102 9 2055 2666 143534148 143534747 2.020000e-117 433.0
21 TraesCS1A01G172900 chr3A 79.226 491 91 10 2089 2571 143022848 143023335 7.600000e-87 331.0
22 TraesCS1A01G172900 chr3D 91.878 394 25 4 176 563 86005540 86005148 8.970000e-151 544.0
23 TraesCS1A01G172900 chr3D 80.875 617 99 9 2055 2666 131242472 131243074 5.550000e-128 468.0
24 TraesCS1A01G172900 chr3D 81.314 487 80 10 2089 2567 130999005 130999488 5.750000e-103 385.0
25 TraesCS1A01G172900 chr3D 76.142 197 40 6 370 562 461405489 461405296 3.020000e-16 97.1
26 TraesCS1A01G172900 chr3D 84.946 93 12 2 474 565 48157448 48157357 3.900000e-15 93.5
27 TraesCS1A01G172900 chr5D 89.447 398 36 2 176 567 410670821 410670424 7.080000e-137 497.0
28 TraesCS1A01G172900 chr6D 87.848 395 27 6 176 564 386524808 386524429 9.350000e-121 444.0
29 TraesCS1A01G172900 chr5B 80.563 391 68 6 176 558 307159604 307159994 9.970000e-76 294.0
30 TraesCS1A01G172900 chr2D 84.783 92 12 2 474 564 553908259 553908349 1.400000e-14 91.6
31 TraesCS1A01G172900 chr2D 79.389 131 19 7 449 576 433027922 433027797 6.530000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G172900 chr1A 308803882 308807552 3670 True 6780.000 6780 100.00000 1 3671 1 chr1A.!!$R1 3670
1 TraesCS1A01G172900 chr1D 236855832 236858448 2616 False 964.175 3476 93.78725 3 2987 4 chr1D.!!$F1 2984
2 TraesCS1A01G172900 chr1B 342321967 342326953 4986 False 933.750 3325 94.06175 70 2953 4 chr1B.!!$F1 2883
3 TraesCS1A01G172900 chr2A 159629325 159629984 659 False 1170.000 1170 98.63600 3012 3671 1 chr2A.!!$F1 659
4 TraesCS1A01G172900 chr2B 451915917 451916580 663 False 1166.000 1166 98.34300 3008 3671 1 chr2B.!!$F1 663
5 TraesCS1A01G172900 chr2B 134566920 134567580 660 True 1112.000 1112 97.12600 3013 3670 1 chr2B.!!$R1 657
6 TraesCS1A01G172900 chr2B 453072545 453073197 652 True 1062.000 1062 96.01800 3018 3670 1 chr2B.!!$R2 652
7 TraesCS1A01G172900 chr4A 598443436 598444095 659 False 1164.000 1164 98.48500 3012 3671 1 chr4A.!!$F1 659
8 TraesCS1A01G172900 chr6B 124645205 124645862 657 True 1123.000 1123 97.42800 3011 3671 1 chr6B.!!$R1 660
9 TraesCS1A01G172900 chr6A 598879756 598880414 658 True 1085.000 1085 96.35800 3013 3671 1 chr6A.!!$R1 658
10 TraesCS1A01G172900 chr4B 520272840 520273493 653 False 1075.000 1075 96.33000 3018 3671 1 chr4B.!!$F1 653
11 TraesCS1A01G172900 chr7A 73769479 73770137 658 True 1051.000 1051 95.44800 3013 3671 1 chr7A.!!$R1 658
12 TraesCS1A01G172900 chr3A 143533245 143534747 1502 False 544.500 656 80.49200 1109 2666 2 chr3A.!!$F2 1557
13 TraesCS1A01G172900 chr3D 131242472 131243074 602 False 468.000 468 80.87500 2055 2666 1 chr3D.!!$F2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 305 0.036010 ATACTTGCTGCTTGGTCGCT 60.036 50.0 0.00 0.00 0.00 4.93 F
480 484 0.108329 AGTGGCTAACGGGATGTTCG 60.108 55.0 0.00 0.00 42.09 3.95 F
2037 2102 0.446222 GTTGATCGGCGCTGCTAAAA 59.554 50.0 12.58 0.08 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2089 0.447801 ACTGATTTTTAGCAGCGCCG 59.552 50.000 2.29 0.00 35.57 6.46 R
2046 2111 1.132643 GCGAACATGTCCTACTCGAGT 59.867 52.381 23.66 23.66 0.00 4.18 R
2998 5595 0.466555 TCAAAACCTTCACCCCCACG 60.467 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.675633 AGTTTGACATGGTGGCTTGC 59.324 50.000 0.00 0.00 0.00 4.01
43 44 3.730215 TGGTGGCTTGCCTCTAAAATA 57.270 42.857 13.18 0.00 0.00 1.40
49 50 6.183360 GGTGGCTTGCCTCTAAAATATTTCAT 60.183 38.462 13.18 0.00 0.00 2.57
109 113 3.941483 GCTCATGCTAAGCAAAAGGAGTA 59.059 43.478 0.00 0.00 43.62 2.59
134 138 7.781548 AAAAATTATTGATCTAGTACGCCGT 57.218 32.000 0.00 0.00 0.00 5.68
175 179 0.585357 GCTCACATCAGCGGCTTATG 59.415 55.000 19.72 19.72 0.00 1.90
176 180 1.224075 CTCACATCAGCGGCTTATGG 58.776 55.000 23.71 14.63 0.00 2.74
177 181 0.829990 TCACATCAGCGGCTTATGGA 59.170 50.000 23.71 16.26 0.00 3.41
178 182 1.417517 TCACATCAGCGGCTTATGGAT 59.582 47.619 23.71 11.09 0.00 3.41
179 183 1.802960 CACATCAGCGGCTTATGGATC 59.197 52.381 23.71 0.00 0.00 3.36
180 184 1.417517 ACATCAGCGGCTTATGGATCA 59.582 47.619 23.71 0.00 0.00 2.92
181 185 2.074576 CATCAGCGGCTTATGGATCAG 58.925 52.381 14.85 0.00 0.00 2.90
182 186 0.250038 TCAGCGGCTTATGGATCAGC 60.250 55.000 0.00 0.00 35.07 4.26
183 187 1.301244 AGCGGCTTATGGATCAGCG 60.301 57.895 0.00 0.00 36.85 5.18
184 188 2.959357 GCGGCTTATGGATCAGCGC 61.959 63.158 0.00 0.00 36.85 5.92
185 189 2.320587 CGGCTTATGGATCAGCGCC 61.321 63.158 2.29 0.00 36.85 6.53
186 190 1.968540 GGCTTATGGATCAGCGCCC 60.969 63.158 2.29 0.00 36.85 6.13
187 191 1.968540 GCTTATGGATCAGCGCCCC 60.969 63.158 2.29 0.56 0.00 5.80
188 192 1.669115 CTTATGGATCAGCGCCCCG 60.669 63.158 2.29 0.00 0.00 5.73
199 203 2.499205 CGCCCCGCAACTAGATCA 59.501 61.111 0.00 0.00 0.00 2.92
200 204 1.069765 CGCCCCGCAACTAGATCAT 59.930 57.895 0.00 0.00 0.00 2.45
201 205 0.317160 CGCCCCGCAACTAGATCATA 59.683 55.000 0.00 0.00 0.00 2.15
202 206 1.797025 GCCCCGCAACTAGATCATAC 58.203 55.000 0.00 0.00 0.00 2.39
203 207 1.070134 GCCCCGCAACTAGATCATACA 59.930 52.381 0.00 0.00 0.00 2.29
204 208 2.755650 CCCCGCAACTAGATCATACAC 58.244 52.381 0.00 0.00 0.00 2.90
205 209 2.102420 CCCCGCAACTAGATCATACACA 59.898 50.000 0.00 0.00 0.00 3.72
206 210 3.123804 CCCGCAACTAGATCATACACAC 58.876 50.000 0.00 0.00 0.00 3.82
207 211 3.430236 CCCGCAACTAGATCATACACACA 60.430 47.826 0.00 0.00 0.00 3.72
208 212 3.551890 CCGCAACTAGATCATACACACAC 59.448 47.826 0.00 0.00 0.00 3.82
209 213 4.424626 CGCAACTAGATCATACACACACT 58.575 43.478 0.00 0.00 0.00 3.55
210 214 4.864806 CGCAACTAGATCATACACACACTT 59.135 41.667 0.00 0.00 0.00 3.16
211 215 5.348724 CGCAACTAGATCATACACACACTTT 59.651 40.000 0.00 0.00 0.00 2.66
212 216 6.128553 CGCAACTAGATCATACACACACTTTT 60.129 38.462 0.00 0.00 0.00 2.27
213 217 7.062956 CGCAACTAGATCATACACACACTTTTA 59.937 37.037 0.00 0.00 0.00 1.52
214 218 8.169268 GCAACTAGATCATACACACACTTTTAC 58.831 37.037 0.00 0.00 0.00 2.01
215 219 9.203421 CAACTAGATCATACACACACTTTTACA 57.797 33.333 0.00 0.00 0.00 2.41
216 220 9.944376 AACTAGATCATACACACACTTTTACAT 57.056 29.630 0.00 0.00 0.00 2.29
217 221 9.587772 ACTAGATCATACACACACTTTTACATC 57.412 33.333 0.00 0.00 0.00 3.06
218 222 9.809096 CTAGATCATACACACACTTTTACATCT 57.191 33.333 0.00 0.00 0.00 2.90
220 224 8.939929 AGATCATACACACACTTTTACATCTTG 58.060 33.333 0.00 0.00 0.00 3.02
221 225 7.433708 TCATACACACACTTTTACATCTTGG 57.566 36.000 0.00 0.00 0.00 3.61
222 226 6.995686 TCATACACACACTTTTACATCTTGGT 59.004 34.615 0.00 0.00 0.00 3.67
223 227 5.499139 ACACACACTTTTACATCTTGGTG 57.501 39.130 0.00 0.00 0.00 4.17
224 228 4.338118 ACACACACTTTTACATCTTGGTGG 59.662 41.667 0.00 0.00 0.00 4.61
225 229 3.317993 ACACACTTTTACATCTTGGTGGC 59.682 43.478 0.00 0.00 0.00 5.01
226 230 3.317711 CACACTTTTACATCTTGGTGGCA 59.682 43.478 0.00 0.00 0.00 4.92
227 231 3.317993 ACACTTTTACATCTTGGTGGCAC 59.682 43.478 9.70 9.70 0.00 5.01
228 232 3.317711 CACTTTTACATCTTGGTGGCACA 59.682 43.478 20.82 2.61 0.00 4.57
229 233 3.957497 ACTTTTACATCTTGGTGGCACAA 59.043 39.130 20.82 4.91 44.16 3.33
230 234 4.404073 ACTTTTACATCTTGGTGGCACAAA 59.596 37.500 20.82 14.17 44.16 2.83
231 235 4.582701 TTTACATCTTGGTGGCACAAAG 57.417 40.909 25.75 25.75 44.16 2.77
232 236 2.071778 ACATCTTGGTGGCACAAAGT 57.928 45.000 29.03 16.62 44.16 2.66
233 237 3.222173 ACATCTTGGTGGCACAAAGTA 57.778 42.857 29.03 18.42 44.16 2.24
234 238 2.884639 ACATCTTGGTGGCACAAAGTAC 59.115 45.455 29.03 8.36 44.16 2.73
235 239 1.588674 TCTTGGTGGCACAAAGTACG 58.411 50.000 29.03 9.65 44.16 3.67
236 240 0.040425 CTTGGTGGCACAAAGTACGC 60.040 55.000 23.87 3.12 44.16 4.42
237 241 0.748367 TTGGTGGCACAAAGTACGCA 60.748 50.000 20.82 2.18 44.16 5.24
238 242 0.748367 TGGTGGCACAAAGTACGCAA 60.748 50.000 20.82 0.00 44.16 4.85
239 243 0.040425 GGTGGCACAAAGTACGCAAG 60.040 55.000 20.82 0.00 44.16 4.01
240 244 0.040425 GTGGCACAAAGTACGCAAGG 60.040 55.000 13.86 0.00 44.16 3.61
241 245 0.464735 TGGCACAAAGTACGCAAGGT 60.465 50.000 0.00 0.00 37.08 3.50
242 246 0.237498 GGCACAAAGTACGCAAGGTC 59.763 55.000 0.00 0.00 46.39 3.85
243 247 0.941542 GCACAAAGTACGCAAGGTCA 59.058 50.000 0.00 0.00 46.39 4.02
244 248 1.535462 GCACAAAGTACGCAAGGTCAT 59.465 47.619 0.00 0.00 46.39 3.06
245 249 2.031157 GCACAAAGTACGCAAGGTCATT 60.031 45.455 0.00 0.00 46.39 2.57
246 250 3.810373 CACAAAGTACGCAAGGTCATTC 58.190 45.455 0.00 0.00 46.39 2.67
247 251 2.812011 ACAAAGTACGCAAGGTCATTCC 59.188 45.455 0.00 0.00 46.39 3.01
248 252 1.722011 AAGTACGCAAGGTCATTCCG 58.278 50.000 0.00 0.00 46.39 4.30
249 253 0.892755 AGTACGCAAGGTCATTCCGA 59.107 50.000 0.00 0.00 46.39 4.55
250 254 0.997196 GTACGCAAGGTCATTCCGAC 59.003 55.000 0.00 0.00 44.57 4.79
251 255 0.892755 TACGCAAGGTCATTCCGACT 59.107 50.000 0.00 0.00 44.70 4.18
252 256 0.892755 ACGCAAGGTCATTCCGACTA 59.107 50.000 0.00 0.00 44.70 2.59
253 257 1.135083 ACGCAAGGTCATTCCGACTAG 60.135 52.381 0.00 0.00 44.70 2.57
254 258 1.802880 CGCAAGGTCATTCCGACTAGG 60.803 57.143 0.00 0.00 44.70 3.02
255 259 1.941325 CAAGGTCATTCCGACTAGGC 58.059 55.000 0.00 0.00 44.70 3.93
256 260 1.207089 CAAGGTCATTCCGACTAGGCA 59.793 52.381 0.00 0.00 44.70 4.75
257 261 1.794714 AGGTCATTCCGACTAGGCAT 58.205 50.000 0.00 0.00 44.70 4.40
258 262 2.958818 AGGTCATTCCGACTAGGCATA 58.041 47.619 0.00 0.00 44.70 3.14
259 263 2.894126 AGGTCATTCCGACTAGGCATAG 59.106 50.000 3.34 3.34 44.70 2.23
260 264 2.028930 GGTCATTCCGACTAGGCATAGG 60.029 54.545 10.60 0.00 44.70 2.57
261 265 1.618837 TCATTCCGACTAGGCATAGGC 59.381 52.381 10.60 5.63 40.77 3.93
265 269 2.049063 GACTAGGCATAGGCGCGG 60.049 66.667 8.83 0.00 42.47 6.46
266 270 4.301027 ACTAGGCATAGGCGCGGC 62.301 66.667 27.06 27.06 42.47 6.53
267 271 3.996124 CTAGGCATAGGCGCGGCT 61.996 66.667 37.69 37.69 42.47 5.52
268 272 3.521529 CTAGGCATAGGCGCGGCTT 62.522 63.158 40.51 24.19 42.47 4.35
269 273 3.515316 TAGGCATAGGCGCGGCTTC 62.515 63.158 40.51 26.79 42.47 3.86
272 276 2.356313 CATAGGCGCGGCTTCGAT 60.356 61.111 40.51 24.91 35.61 3.59
273 277 1.956170 CATAGGCGCGGCTTCGATT 60.956 57.895 40.51 18.10 35.61 3.34
274 278 1.664965 ATAGGCGCGGCTTCGATTC 60.665 57.895 40.51 2.74 35.61 2.52
275 279 2.363711 ATAGGCGCGGCTTCGATTCA 62.364 55.000 40.51 21.21 35.61 2.57
276 280 2.363711 TAGGCGCGGCTTCGATTCAT 62.364 55.000 40.51 15.67 35.61 2.57
277 281 2.709475 GCGCGGCTTCGATTCATT 59.291 55.556 8.83 0.00 35.61 2.57
278 282 1.368137 GCGCGGCTTCGATTCATTC 60.368 57.895 8.83 0.00 35.61 2.67
279 283 2.005995 CGCGGCTTCGATTCATTCA 58.994 52.632 0.00 0.00 35.61 2.57
280 284 0.583438 CGCGGCTTCGATTCATTCAT 59.417 50.000 0.00 0.00 35.61 2.57
281 285 1.397693 CGCGGCTTCGATTCATTCATC 60.398 52.381 0.00 0.00 35.61 2.92
282 286 1.599071 GCGGCTTCGATTCATTCATCA 59.401 47.619 0.00 0.00 35.61 3.07
283 287 2.225019 GCGGCTTCGATTCATTCATCAT 59.775 45.455 0.00 0.00 35.61 2.45
284 288 3.433274 GCGGCTTCGATTCATTCATCATA 59.567 43.478 0.00 0.00 35.61 2.15
285 289 4.667668 GCGGCTTCGATTCATTCATCATAC 60.668 45.833 0.00 0.00 35.61 2.39
286 290 4.687948 CGGCTTCGATTCATTCATCATACT 59.312 41.667 0.00 0.00 35.61 2.12
287 291 5.178252 CGGCTTCGATTCATTCATCATACTT 59.822 40.000 0.00 0.00 35.61 2.24
288 292 6.369005 GGCTTCGATTCATTCATCATACTTG 58.631 40.000 0.00 0.00 0.00 3.16
289 293 5.850128 GCTTCGATTCATTCATCATACTTGC 59.150 40.000 0.00 0.00 0.00 4.01
290 294 6.293298 GCTTCGATTCATTCATCATACTTGCT 60.293 38.462 0.00 0.00 0.00 3.91
291 295 6.535274 TCGATTCATTCATCATACTTGCTG 57.465 37.500 0.00 0.00 0.00 4.41
292 296 5.049886 TCGATTCATTCATCATACTTGCTGC 60.050 40.000 0.00 0.00 0.00 5.25
293 297 5.049612 CGATTCATTCATCATACTTGCTGCT 60.050 40.000 0.00 0.00 0.00 4.24
294 298 6.512903 CGATTCATTCATCATACTTGCTGCTT 60.513 38.462 0.00 0.00 0.00 3.91
295 299 5.494632 TCATTCATCATACTTGCTGCTTG 57.505 39.130 0.00 0.00 0.00 4.01
296 300 4.337274 TCATTCATCATACTTGCTGCTTGG 59.663 41.667 0.00 0.00 0.00 3.61
297 301 3.354948 TCATCATACTTGCTGCTTGGT 57.645 42.857 0.00 0.00 0.00 3.67
298 302 3.273434 TCATCATACTTGCTGCTTGGTC 58.727 45.455 0.00 0.00 0.00 4.02
299 303 1.725641 TCATACTTGCTGCTTGGTCG 58.274 50.000 0.00 0.00 0.00 4.79
300 304 0.097674 CATACTTGCTGCTTGGTCGC 59.902 55.000 0.00 0.00 0.00 5.19
301 305 0.036010 ATACTTGCTGCTTGGTCGCT 60.036 50.000 0.00 0.00 0.00 4.93
302 306 0.606096 TACTTGCTGCTTGGTCGCTA 59.394 50.000 0.00 0.00 0.00 4.26
303 307 0.036010 ACTTGCTGCTTGGTCGCTAT 60.036 50.000 0.00 0.00 0.00 2.97
304 308 0.376152 CTTGCTGCTTGGTCGCTATG 59.624 55.000 0.00 0.00 0.00 2.23
305 309 1.026182 TTGCTGCTTGGTCGCTATGG 61.026 55.000 0.00 0.00 0.00 2.74
306 310 1.153369 GCTGCTTGGTCGCTATGGA 60.153 57.895 0.00 0.00 0.00 3.41
307 311 0.744414 GCTGCTTGGTCGCTATGGAA 60.744 55.000 0.00 0.00 0.00 3.53
308 312 1.737838 CTGCTTGGTCGCTATGGAAA 58.262 50.000 0.00 0.00 0.00 3.13
309 313 1.398390 CTGCTTGGTCGCTATGGAAAC 59.602 52.381 0.00 0.00 0.00 2.78
325 329 4.479158 TGGAAACAAAGAAATGCTAGGGT 58.521 39.130 0.00 0.00 37.44 4.34
326 330 4.280677 TGGAAACAAAGAAATGCTAGGGTG 59.719 41.667 0.00 0.00 37.44 4.61
327 331 4.280929 GGAAACAAAGAAATGCTAGGGTGT 59.719 41.667 0.00 0.00 0.00 4.16
328 332 5.453567 AAACAAAGAAATGCTAGGGTGTC 57.546 39.130 0.00 0.00 0.00 3.67
329 333 4.373156 ACAAAGAAATGCTAGGGTGTCT 57.627 40.909 0.00 0.00 0.00 3.41
330 334 4.074970 ACAAAGAAATGCTAGGGTGTCTG 58.925 43.478 0.00 0.00 0.00 3.51
331 335 3.356529 AAGAAATGCTAGGGTGTCTGG 57.643 47.619 0.00 0.00 0.00 3.86
332 336 2.551270 AGAAATGCTAGGGTGTCTGGA 58.449 47.619 0.00 0.00 0.00 3.86
333 337 2.237392 AGAAATGCTAGGGTGTCTGGAC 59.763 50.000 0.00 0.00 0.00 4.02
334 338 0.537188 AATGCTAGGGTGTCTGGACG 59.463 55.000 0.00 0.00 0.00 4.79
335 339 1.961180 ATGCTAGGGTGTCTGGACGC 61.961 60.000 5.80 5.80 40.87 5.19
336 340 2.646175 GCTAGGGTGTCTGGACGCA 61.646 63.158 14.83 0.00 43.22 5.24
337 341 1.215647 CTAGGGTGTCTGGACGCAC 59.784 63.158 14.83 11.78 45.10 5.34
340 344 3.986006 GGTGTCTGGACGCACGGA 61.986 66.667 14.83 0.00 43.22 4.69
341 345 2.028484 GTGTCTGGACGCACGGAA 59.972 61.111 9.10 0.00 41.22 4.30
342 346 2.028484 TGTCTGGACGCACGGAAC 59.972 61.111 0.00 0.00 0.00 3.62
343 347 2.028484 GTCTGGACGCACGGAACA 59.972 61.111 0.00 0.00 0.00 3.18
344 348 1.593209 GTCTGGACGCACGGAACAA 60.593 57.895 0.00 0.00 0.00 2.83
345 349 1.593209 TCTGGACGCACGGAACAAC 60.593 57.895 0.00 0.00 0.00 3.32
346 350 1.885388 CTGGACGCACGGAACAACA 60.885 57.895 0.00 0.00 0.00 3.33
347 351 1.433053 CTGGACGCACGGAACAACAA 61.433 55.000 0.00 0.00 0.00 2.83
348 352 1.025113 TGGACGCACGGAACAACAAA 61.025 50.000 0.00 0.00 0.00 2.83
349 353 0.590481 GGACGCACGGAACAACAAAC 60.590 55.000 0.00 0.00 0.00 2.93
350 354 0.375803 GACGCACGGAACAACAAACT 59.624 50.000 0.00 0.00 0.00 2.66
351 355 0.375803 ACGCACGGAACAACAAACTC 59.624 50.000 0.00 0.00 0.00 3.01
352 356 0.375454 CGCACGGAACAACAAACTCA 59.625 50.000 0.00 0.00 0.00 3.41
353 357 1.202087 CGCACGGAACAACAAACTCAA 60.202 47.619 0.00 0.00 0.00 3.02
354 358 2.182014 GCACGGAACAACAAACTCAAC 58.818 47.619 0.00 0.00 0.00 3.18
355 359 2.414824 GCACGGAACAACAAACTCAACA 60.415 45.455 0.00 0.00 0.00 3.33
356 360 3.827625 CACGGAACAACAAACTCAACAA 58.172 40.909 0.00 0.00 0.00 2.83
357 361 3.606346 CACGGAACAACAAACTCAACAAC 59.394 43.478 0.00 0.00 0.00 3.32
358 362 3.504520 ACGGAACAACAAACTCAACAACT 59.495 39.130 0.00 0.00 0.00 3.16
359 363 4.095610 CGGAACAACAAACTCAACAACTC 58.904 43.478 0.00 0.00 0.00 3.01
360 364 4.378978 CGGAACAACAAACTCAACAACTCA 60.379 41.667 0.00 0.00 0.00 3.41
361 365 4.857037 GGAACAACAAACTCAACAACTCAC 59.143 41.667 0.00 0.00 0.00 3.51
362 366 5.335661 GGAACAACAAACTCAACAACTCACT 60.336 40.000 0.00 0.00 0.00 3.41
363 367 5.705609 ACAACAAACTCAACAACTCACTT 57.294 34.783 0.00 0.00 0.00 3.16
364 368 5.699839 ACAACAAACTCAACAACTCACTTC 58.300 37.500 0.00 0.00 0.00 3.01
365 369 5.473504 ACAACAAACTCAACAACTCACTTCT 59.526 36.000 0.00 0.00 0.00 2.85
366 370 5.803020 ACAAACTCAACAACTCACTTCTC 57.197 39.130 0.00 0.00 0.00 2.87
367 371 5.245531 ACAAACTCAACAACTCACTTCTCA 58.754 37.500 0.00 0.00 0.00 3.27
368 372 5.352569 ACAAACTCAACAACTCACTTCTCAG 59.647 40.000 0.00 0.00 0.00 3.35
369 373 5.344743 AACTCAACAACTCACTTCTCAGA 57.655 39.130 0.00 0.00 0.00 3.27
370 374 5.543507 ACTCAACAACTCACTTCTCAGAT 57.456 39.130 0.00 0.00 0.00 2.90
371 375 5.537188 ACTCAACAACTCACTTCTCAGATC 58.463 41.667 0.00 0.00 0.00 2.75
372 376 5.069648 ACTCAACAACTCACTTCTCAGATCA 59.930 40.000 0.00 0.00 0.00 2.92
373 377 6.106648 TCAACAACTCACTTCTCAGATCAT 57.893 37.500 0.00 0.00 0.00 2.45
374 378 5.930569 TCAACAACTCACTTCTCAGATCATG 59.069 40.000 0.00 0.00 0.00 3.07
375 379 4.829968 ACAACTCACTTCTCAGATCATGG 58.170 43.478 0.00 0.00 0.00 3.66
376 380 4.529769 ACAACTCACTTCTCAGATCATGGA 59.470 41.667 0.00 0.00 0.00 3.41
377 381 5.012458 ACAACTCACTTCTCAGATCATGGAA 59.988 40.000 0.00 0.00 0.00 3.53
378 382 5.341872 ACTCACTTCTCAGATCATGGAAG 57.658 43.478 15.26 15.26 39.84 3.46
379 383 5.022122 ACTCACTTCTCAGATCATGGAAGA 58.978 41.667 20.48 4.28 37.93 2.87
380 384 5.127519 ACTCACTTCTCAGATCATGGAAGAG 59.872 44.000 20.48 15.35 37.93 2.85
381 385 5.022122 TCACTTCTCAGATCATGGAAGAGT 58.978 41.667 20.48 8.73 37.93 3.24
382 386 5.483231 TCACTTCTCAGATCATGGAAGAGTT 59.517 40.000 20.48 4.15 37.93 3.01
383 387 5.581479 CACTTCTCAGATCATGGAAGAGTTG 59.419 44.000 20.48 10.22 37.93 3.16
384 388 4.134379 TCTCAGATCATGGAAGAGTTGC 57.866 45.455 0.00 0.00 0.00 4.17
385 389 2.864946 CTCAGATCATGGAAGAGTTGCG 59.135 50.000 0.00 0.00 0.00 4.85
386 390 2.497273 TCAGATCATGGAAGAGTTGCGA 59.503 45.455 0.00 0.00 0.00 5.10
387 391 2.864946 CAGATCATGGAAGAGTTGCGAG 59.135 50.000 0.00 0.00 0.00 5.03
388 392 2.762887 AGATCATGGAAGAGTTGCGAGA 59.237 45.455 0.00 0.00 0.00 4.04
389 393 2.662006 TCATGGAAGAGTTGCGAGAG 57.338 50.000 0.00 0.00 0.00 3.20
390 394 1.895798 TCATGGAAGAGTTGCGAGAGT 59.104 47.619 0.00 0.00 0.00 3.24
391 395 1.998315 CATGGAAGAGTTGCGAGAGTG 59.002 52.381 0.00 0.00 0.00 3.51
392 396 0.318441 TGGAAGAGTTGCGAGAGTGG 59.682 55.000 0.00 0.00 0.00 4.00
393 397 1.016653 GGAAGAGTTGCGAGAGTGGC 61.017 60.000 0.00 0.00 0.00 5.01
394 398 0.319900 GAAGAGTTGCGAGAGTGGCA 60.320 55.000 0.00 0.00 38.93 4.92
395 399 0.601311 AAGAGTTGCGAGAGTGGCAC 60.601 55.000 10.29 10.29 40.71 5.01
396 400 1.300931 GAGTTGCGAGAGTGGCACA 60.301 57.895 21.41 0.00 40.71 4.57
407 411 2.112928 TGGCACACCGCATGAGTT 59.887 55.556 0.00 0.00 45.17 3.01
408 412 2.260154 TGGCACACCGCATGAGTTG 61.260 57.895 0.00 0.00 45.17 3.16
409 413 2.562912 GCACACCGCATGAGTTGG 59.437 61.111 0.00 0.00 41.79 3.77
410 414 1.965930 GCACACCGCATGAGTTGGA 60.966 57.895 0.00 0.00 41.79 3.53
411 415 1.868997 CACACCGCATGAGTTGGAC 59.131 57.895 0.00 0.00 0.00 4.02
412 416 1.667830 ACACCGCATGAGTTGGACG 60.668 57.895 0.00 0.00 0.00 4.79
413 417 1.667830 CACCGCATGAGTTGGACGT 60.668 57.895 0.00 0.00 0.00 4.34
414 418 1.070786 ACCGCATGAGTTGGACGTT 59.929 52.632 0.00 0.00 0.00 3.99
415 419 0.534203 ACCGCATGAGTTGGACGTTT 60.534 50.000 0.00 0.00 0.00 3.60
416 420 1.270412 ACCGCATGAGTTGGACGTTTA 60.270 47.619 0.00 0.00 0.00 2.01
417 421 1.127951 CCGCATGAGTTGGACGTTTAC 59.872 52.381 0.00 0.00 0.00 2.01
418 422 1.795872 CGCATGAGTTGGACGTTTACA 59.204 47.619 0.00 0.00 0.00 2.41
419 423 2.415168 CGCATGAGTTGGACGTTTACAT 59.585 45.455 0.00 0.00 0.00 2.29
420 424 3.483574 CGCATGAGTTGGACGTTTACATC 60.484 47.826 0.00 0.00 0.00 3.06
421 425 3.435327 GCATGAGTTGGACGTTTACATCA 59.565 43.478 0.00 0.00 0.00 3.07
422 426 4.094887 GCATGAGTTGGACGTTTACATCAT 59.905 41.667 0.00 0.00 0.00 2.45
423 427 5.391950 GCATGAGTTGGACGTTTACATCATT 60.392 40.000 0.00 0.00 0.00 2.57
424 428 6.611381 CATGAGTTGGACGTTTACATCATTT 58.389 36.000 0.00 0.00 0.00 2.32
425 429 6.627395 TGAGTTGGACGTTTACATCATTTT 57.373 33.333 0.00 0.00 0.00 1.82
426 430 7.731882 TGAGTTGGACGTTTACATCATTTTA 57.268 32.000 0.00 0.00 0.00 1.52
427 431 8.330466 TGAGTTGGACGTTTACATCATTTTAT 57.670 30.769 0.00 0.00 0.00 1.40
428 432 8.233868 TGAGTTGGACGTTTACATCATTTTATG 58.766 33.333 0.00 0.00 0.00 1.90
429 433 8.330466 AGTTGGACGTTTACATCATTTTATGA 57.670 30.769 0.00 0.00 44.55 2.15
430 434 8.450964 AGTTGGACGTTTACATCATTTTATGAG 58.549 33.333 0.00 0.00 43.53 2.90
431 435 8.447833 GTTGGACGTTTACATCATTTTATGAGA 58.552 33.333 0.00 0.00 43.53 3.27
432 436 8.196802 TGGACGTTTACATCATTTTATGAGAG 57.803 34.615 0.00 0.00 43.53 3.20
433 437 8.038351 TGGACGTTTACATCATTTTATGAGAGA 58.962 33.333 0.00 0.00 43.53 3.10
434 438 9.046296 GGACGTTTACATCATTTTATGAGAGAT 57.954 33.333 0.00 0.00 43.53 2.75
446 450 9.855361 CATTTTATGAGAGATTAGTTTAGTGCG 57.145 33.333 0.00 0.00 0.00 5.34
447 451 8.997621 TTTTATGAGAGATTAGTTTAGTGCGT 57.002 30.769 0.00 0.00 0.00 5.24
448 452 7.987268 TTATGAGAGATTAGTTTAGTGCGTG 57.013 36.000 0.00 0.00 0.00 5.34
449 453 5.386958 TGAGAGATTAGTTTAGTGCGTGT 57.613 39.130 0.00 0.00 0.00 4.49
450 454 5.161358 TGAGAGATTAGTTTAGTGCGTGTG 58.839 41.667 0.00 0.00 0.00 3.82
451 455 5.135508 AGAGATTAGTTTAGTGCGTGTGT 57.864 39.130 0.00 0.00 0.00 3.72
452 456 5.539048 AGAGATTAGTTTAGTGCGTGTGTT 58.461 37.500 0.00 0.00 0.00 3.32
453 457 5.405571 AGAGATTAGTTTAGTGCGTGTGTTG 59.594 40.000 0.00 0.00 0.00 3.33
454 458 4.451096 AGATTAGTTTAGTGCGTGTGTTGG 59.549 41.667 0.00 0.00 0.00 3.77
455 459 2.032680 AGTTTAGTGCGTGTGTTGGT 57.967 45.000 0.00 0.00 0.00 3.67
456 460 1.668751 AGTTTAGTGCGTGTGTTGGTG 59.331 47.619 0.00 0.00 0.00 4.17
457 461 0.378962 TTTAGTGCGTGTGTTGGTGC 59.621 50.000 0.00 0.00 0.00 5.01
458 462 0.462937 TTAGTGCGTGTGTTGGTGCT 60.463 50.000 0.00 0.00 0.00 4.40
459 463 1.157257 TAGTGCGTGTGTTGGTGCTG 61.157 55.000 0.00 0.00 0.00 4.41
460 464 3.208383 TGCGTGTGTTGGTGCTGG 61.208 61.111 0.00 0.00 0.00 4.85
461 465 2.899838 GCGTGTGTTGGTGCTGGA 60.900 61.111 0.00 0.00 0.00 3.86
462 466 2.896801 GCGTGTGTTGGTGCTGGAG 61.897 63.158 0.00 0.00 0.00 3.86
463 467 1.523711 CGTGTGTTGGTGCTGGAGT 60.524 57.895 0.00 0.00 0.00 3.85
464 468 1.775039 CGTGTGTTGGTGCTGGAGTG 61.775 60.000 0.00 0.00 0.00 3.51
465 469 1.152984 TGTGTTGGTGCTGGAGTGG 60.153 57.895 0.00 0.00 0.00 4.00
466 470 2.203337 TGTTGGTGCTGGAGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
467 471 2.113986 GTTGGTGCTGGAGTGGCT 59.886 61.111 0.00 0.00 0.00 4.75
468 472 1.374947 GTTGGTGCTGGAGTGGCTA 59.625 57.895 0.00 0.00 0.00 3.93
469 473 0.250727 GTTGGTGCTGGAGTGGCTAA 60.251 55.000 0.00 0.00 0.00 3.09
470 474 0.250727 TTGGTGCTGGAGTGGCTAAC 60.251 55.000 0.00 0.00 0.00 2.34
471 475 1.741770 GGTGCTGGAGTGGCTAACG 60.742 63.158 0.00 0.00 0.00 3.18
472 476 1.741770 GTGCTGGAGTGGCTAACGG 60.742 63.158 0.00 0.00 0.00 4.44
473 477 2.125106 GCTGGAGTGGCTAACGGG 60.125 66.667 0.00 0.00 0.00 5.28
474 478 2.656069 GCTGGAGTGGCTAACGGGA 61.656 63.158 0.00 0.00 0.00 5.14
475 479 1.972660 GCTGGAGTGGCTAACGGGAT 61.973 60.000 0.00 0.00 0.00 3.85
476 480 0.179073 CTGGAGTGGCTAACGGGATG 60.179 60.000 0.00 0.00 0.00 3.51
477 481 0.907704 TGGAGTGGCTAACGGGATGT 60.908 55.000 0.00 0.00 0.00 3.06
478 482 0.252197 GGAGTGGCTAACGGGATGTT 59.748 55.000 0.00 0.00 44.78 2.71
479 483 1.653151 GAGTGGCTAACGGGATGTTC 58.347 55.000 0.00 0.00 42.09 3.18
480 484 0.108329 AGTGGCTAACGGGATGTTCG 60.108 55.000 0.00 0.00 42.09 3.95
481 485 1.448893 TGGCTAACGGGATGTTCGC 60.449 57.895 0.00 0.00 45.73 4.70
482 486 4.195308 GCTAACGGGATGTTCGCA 57.805 55.556 0.15 0.00 45.75 5.10
483 487 2.690326 GCTAACGGGATGTTCGCAT 58.310 52.632 0.15 0.00 45.75 4.73
493 497 3.122937 GATGTTCGCATCCTTGTTCAC 57.877 47.619 0.00 0.00 46.22 3.18
494 498 1.234821 TGTTCGCATCCTTGTTCACC 58.765 50.000 0.00 0.00 0.00 4.02
495 499 1.202758 TGTTCGCATCCTTGTTCACCT 60.203 47.619 0.00 0.00 0.00 4.00
496 500 1.880027 GTTCGCATCCTTGTTCACCTT 59.120 47.619 0.00 0.00 0.00 3.50
497 501 1.808411 TCGCATCCTTGTTCACCTTC 58.192 50.000 0.00 0.00 0.00 3.46
498 502 1.347707 TCGCATCCTTGTTCACCTTCT 59.652 47.619 0.00 0.00 0.00 2.85
499 503 2.154462 CGCATCCTTGTTCACCTTCTT 58.846 47.619 0.00 0.00 0.00 2.52
500 504 3.007506 TCGCATCCTTGTTCACCTTCTTA 59.992 43.478 0.00 0.00 0.00 2.10
501 505 3.941483 CGCATCCTTGTTCACCTTCTTAT 59.059 43.478 0.00 0.00 0.00 1.73
502 506 5.105106 TCGCATCCTTGTTCACCTTCTTATA 60.105 40.000 0.00 0.00 0.00 0.98
503 507 5.584649 CGCATCCTTGTTCACCTTCTTATAA 59.415 40.000 0.00 0.00 0.00 0.98
504 508 6.093495 CGCATCCTTGTTCACCTTCTTATAAA 59.907 38.462 0.00 0.00 0.00 1.40
505 509 7.201732 CGCATCCTTGTTCACCTTCTTATAAAT 60.202 37.037 0.00 0.00 0.00 1.40
506 510 9.120538 GCATCCTTGTTCACCTTCTTATAAATA 57.879 33.333 0.00 0.00 0.00 1.40
538 542 9.485206 TTCTCTTCTATAAAAATATGGTACGCC 57.515 33.333 0.00 0.00 0.00 5.68
553 557 1.710013 ACGCCATTGACGTACTCTTG 58.290 50.000 0.00 0.00 43.02 3.02
554 558 1.271379 ACGCCATTGACGTACTCTTGA 59.729 47.619 0.00 0.00 43.02 3.02
555 559 2.288579 ACGCCATTGACGTACTCTTGAA 60.289 45.455 0.00 0.00 43.02 2.69
556 560 2.734606 CGCCATTGACGTACTCTTGAAA 59.265 45.455 0.00 0.00 0.00 2.69
557 561 3.185594 CGCCATTGACGTACTCTTGAAAA 59.814 43.478 0.00 0.00 0.00 2.29
558 562 7.029822 ACGCCATTGACGTACTCTTGAAAAG 62.030 44.000 0.00 0.00 43.73 2.27
575 579 7.903995 TTGAAAAGAAAAACATCAACAGCTT 57.096 28.000 0.00 0.00 0.00 3.74
576 580 8.994429 TTGAAAAGAAAAACATCAACAGCTTA 57.006 26.923 0.00 0.00 0.00 3.09
577 581 9.598517 TTGAAAAGAAAAACATCAACAGCTTAT 57.401 25.926 0.00 0.00 0.00 1.73
630 637 7.040409 TCCTAGAAAATTCAGGAGCTTTTTGTC 60.040 37.037 9.06 0.00 32.98 3.18
631 638 5.523369 AGAAAATTCAGGAGCTTTTTGTCG 58.477 37.500 0.00 0.00 0.00 4.35
632 639 2.997485 ATTCAGGAGCTTTTTGTCGC 57.003 45.000 0.00 0.00 0.00 5.19
633 640 1.967319 TTCAGGAGCTTTTTGTCGCT 58.033 45.000 0.00 0.00 39.61 4.93
637 644 3.755697 GAGCTTTTTGTCGCTCCAC 57.244 52.632 0.00 0.00 45.21 4.02
638 645 0.944386 GAGCTTTTTGTCGCTCCACA 59.056 50.000 0.00 0.00 45.21 4.17
639 646 0.663153 AGCTTTTTGTCGCTCCACAC 59.337 50.000 0.00 0.00 0.00 3.82
640 647 0.663153 GCTTTTTGTCGCTCCACACT 59.337 50.000 0.00 0.00 0.00 3.55
641 648 1.065551 GCTTTTTGTCGCTCCACACTT 59.934 47.619 0.00 0.00 0.00 3.16
642 649 2.479560 GCTTTTTGTCGCTCCACACTTT 60.480 45.455 0.00 0.00 0.00 2.66
643 650 3.363178 CTTTTTGTCGCTCCACACTTTC 58.637 45.455 0.00 0.00 0.00 2.62
644 651 2.325583 TTTGTCGCTCCACACTTTCT 57.674 45.000 0.00 0.00 0.00 2.52
645 652 2.325583 TTGTCGCTCCACACTTTCTT 57.674 45.000 0.00 0.00 0.00 2.52
646 653 2.325583 TGTCGCTCCACACTTTCTTT 57.674 45.000 0.00 0.00 0.00 2.52
647 654 2.639065 TGTCGCTCCACACTTTCTTTT 58.361 42.857 0.00 0.00 0.00 2.27
648 655 3.013921 TGTCGCTCCACACTTTCTTTTT 58.986 40.909 0.00 0.00 0.00 1.94
936 964 3.124636 GCTTGTTTAAATCTTCTCGCGGA 59.875 43.478 6.13 0.00 0.00 5.54
980 1008 1.227853 ACTGGTGTCGAAAGGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
1057 1085 1.409427 CCACCTTGGTCGTATCTCTCC 59.591 57.143 0.00 0.00 31.35 3.71
1101 1132 1.444895 CAGCAACAATGGGAAGCGC 60.445 57.895 0.00 0.00 0.00 5.92
1104 1135 1.865788 GCAACAATGGGAAGCGCAGA 61.866 55.000 11.47 0.00 0.00 4.26
1542 1585 2.262183 CGAGCTCCTCATCGCCTAT 58.738 57.895 8.47 0.00 31.42 2.57
1719 1762 3.311110 GTGGACTCTGTGCGGGGA 61.311 66.667 0.00 0.00 0.00 4.81
1920 1963 2.257676 GGCGTTCGTCTCGGAACT 59.742 61.111 4.21 0.00 43.20 3.01
2016 2081 1.213094 GGCGTGCGCGTGATATAGTT 61.213 55.000 22.18 0.00 43.06 2.24
2022 2087 3.061563 GTGCGCGTGATATAGTTTGTTGA 59.938 43.478 8.43 0.00 0.00 3.18
2024 2089 4.026062 TGCGCGTGATATAGTTTGTTGATC 60.026 41.667 8.43 0.00 0.00 2.92
2025 2090 4.677960 CGCGTGATATAGTTTGTTGATCG 58.322 43.478 0.00 0.00 0.00 3.69
2026 2091 4.375005 CGCGTGATATAGTTTGTTGATCGG 60.375 45.833 0.00 0.00 0.00 4.18
2027 2092 4.608445 GCGTGATATAGTTTGTTGATCGGC 60.608 45.833 0.00 0.00 0.00 5.54
2028 2093 4.375005 CGTGATATAGTTTGTTGATCGGCG 60.375 45.833 0.00 0.00 0.00 6.46
2029 2094 3.493129 TGATATAGTTTGTTGATCGGCGC 59.507 43.478 0.00 0.00 0.00 6.53
2030 2095 2.024176 ATAGTTTGTTGATCGGCGCT 57.976 45.000 7.64 0.00 0.00 5.92
2031 2096 1.075542 TAGTTTGTTGATCGGCGCTG 58.924 50.000 10.86 10.86 0.00 5.18
2032 2097 1.797537 GTTTGTTGATCGGCGCTGC 60.798 57.895 12.58 0.00 0.00 5.25
2033 2098 1.965930 TTTGTTGATCGGCGCTGCT 60.966 52.632 12.58 0.00 0.00 4.24
2035 2100 0.672091 TTGTTGATCGGCGCTGCTAA 60.672 50.000 12.58 3.34 0.00 3.09
2036 2101 0.672091 TGTTGATCGGCGCTGCTAAA 60.672 50.000 12.58 0.00 0.00 1.85
2037 2102 0.446222 GTTGATCGGCGCTGCTAAAA 59.554 50.000 12.58 0.08 0.00 1.52
2038 2103 1.135803 GTTGATCGGCGCTGCTAAAAA 60.136 47.619 12.58 0.00 0.00 1.94
2039 2104 1.378531 TGATCGGCGCTGCTAAAAAT 58.621 45.000 12.58 0.00 0.00 1.82
2042 2107 0.726827 TCGGCGCTGCTAAAAATCAG 59.273 50.000 12.58 0.00 0.00 2.90
2043 2108 0.447801 CGGCGCTGCTAAAAATCAGT 59.552 50.000 7.64 0.00 33.09 3.41
2044 2109 1.529826 CGGCGCTGCTAAAAATCAGTC 60.530 52.381 7.64 0.00 33.09 3.51
2045 2110 1.529826 GGCGCTGCTAAAAATCAGTCG 60.530 52.381 7.64 0.00 35.01 4.18
2046 2111 1.393539 GCGCTGCTAAAAATCAGTCGA 59.606 47.619 0.00 0.00 34.35 4.20
2047 2112 2.784665 GCGCTGCTAAAAATCAGTCGAC 60.785 50.000 7.70 7.70 34.35 4.20
2053 2125 4.167268 GCTAAAAATCAGTCGACTCGAGT 58.833 43.478 20.18 20.18 40.36 4.18
2458 2533 2.125350 GCCAGGACTTCGAGCTGG 60.125 66.667 0.00 0.00 38.17 4.85
2679 2757 4.503910 CGTGGTTTCCATAGACATGAAGA 58.496 43.478 0.00 0.00 35.28 2.87
2725 2826 4.456280 TCATATATGGCTCACGGATCAC 57.544 45.455 12.78 0.00 0.00 3.06
2769 2870 3.895656 CCCTACCTACATAGTTGCTGCTA 59.104 47.826 0.00 0.00 0.00 3.49
2828 2929 4.087510 AGATGCAAACATTGACATGACG 57.912 40.909 0.00 0.00 36.35 4.35
2835 2936 1.806542 ACATTGACATGACGCCTTCAC 59.193 47.619 0.00 0.00 36.92 3.18
2836 2937 1.131126 CATTGACATGACGCCTTCACC 59.869 52.381 0.00 0.00 36.92 4.02
2837 2938 0.396435 TTGACATGACGCCTTCACCT 59.604 50.000 0.00 0.00 36.92 4.00
2838 2939 0.320683 TGACATGACGCCTTCACCTG 60.321 55.000 0.00 0.00 36.92 4.00
2839 2940 0.037326 GACATGACGCCTTCACCTGA 60.037 55.000 0.00 0.00 36.92 3.86
2899 5478 1.135859 GCGCATTCTCACAAGGTTGAG 60.136 52.381 0.30 0.00 43.93 3.02
2905 5484 5.874810 GCATTCTCACAAGGTTGAGTACATA 59.125 40.000 0.00 0.00 43.19 2.29
2954 5551 9.555727 TTTGACTCTTAAAAGTACTAGCATGTT 57.444 29.630 0.00 0.00 0.00 2.71
2957 5554 9.372369 GACTCTTAAAAGTACTAGCATGTTCAT 57.628 33.333 0.00 0.00 0.00 2.57
2995 5592 8.031864 AGATCTACATTAGCCATTGTATCTTCG 58.968 37.037 0.00 0.00 0.00 3.79
2996 5593 6.455647 TCTACATTAGCCATTGTATCTTCGG 58.544 40.000 0.00 0.00 0.00 4.30
2997 5594 4.389374 ACATTAGCCATTGTATCTTCGGG 58.611 43.478 0.00 0.00 0.00 5.14
2998 5595 2.543777 TAGCCATTGTATCTTCGGGC 57.456 50.000 0.00 0.00 41.65 6.13
2999 5596 0.532862 AGCCATTGTATCTTCGGGCG 60.533 55.000 0.00 0.00 45.79 6.13
3000 5597 0.814010 GCCATTGTATCTTCGGGCGT 60.814 55.000 0.00 0.00 0.00 5.68
3001 5598 0.937304 CCATTGTATCTTCGGGCGTG 59.063 55.000 0.00 0.00 0.00 5.34
3002 5599 0.937304 CATTGTATCTTCGGGCGTGG 59.063 55.000 0.00 0.00 0.00 4.94
3003 5600 0.179056 ATTGTATCTTCGGGCGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
3004 5601 2.108362 GTATCTTCGGGCGTGGGG 59.892 66.667 0.00 0.00 0.00 4.96
3005 5602 3.158648 TATCTTCGGGCGTGGGGG 61.159 66.667 0.00 0.00 0.00 5.40
3006 5603 3.988050 TATCTTCGGGCGTGGGGGT 62.988 63.158 0.00 0.00 0.00 4.95
3322 5919 3.520862 CGCTAACGTCGGGGCCTA 61.521 66.667 0.84 0.00 33.53 3.93
3390 5987 3.749064 GCGGTCGAGGTCAGAGCA 61.749 66.667 1.66 0.00 36.03 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.895100 GAGGCAAGCCACCATGTCAA 60.895 55.000 14.40 0.00 38.92 3.18
28 29 6.275335 TGCATGAAATATTTTAGAGGCAAGC 58.725 36.000 1.43 4.21 0.00 4.01
33 34 9.590451 ACAATGTTGCATGAAATATTTTAGAGG 57.410 29.630 5.69 0.00 0.00 3.69
49 50 9.481529 ACAGTGTATTCGAACAACAATGTTGCA 62.482 37.037 28.60 9.87 46.64 4.08
134 138 4.212847 GCGATGATAACTACACTCGACCTA 59.787 45.833 0.00 0.00 0.00 3.08
182 186 0.317160 TATGATCTAGTTGCGGGGCG 59.683 55.000 0.00 0.00 0.00 6.13
183 187 1.070134 TGTATGATCTAGTTGCGGGGC 59.930 52.381 0.00 0.00 0.00 5.80
184 188 2.102420 TGTGTATGATCTAGTTGCGGGG 59.898 50.000 0.00 0.00 0.00 5.73
185 189 3.123804 GTGTGTATGATCTAGTTGCGGG 58.876 50.000 0.00 0.00 0.00 6.13
186 190 3.551890 GTGTGTGTATGATCTAGTTGCGG 59.448 47.826 0.00 0.00 0.00 5.69
187 191 4.424626 AGTGTGTGTATGATCTAGTTGCG 58.575 43.478 0.00 0.00 0.00 4.85
188 192 6.727824 AAAGTGTGTGTATGATCTAGTTGC 57.272 37.500 0.00 0.00 0.00 4.17
189 193 9.203421 TGTAAAAGTGTGTGTATGATCTAGTTG 57.797 33.333 0.00 0.00 0.00 3.16
190 194 9.944376 ATGTAAAAGTGTGTGTATGATCTAGTT 57.056 29.630 0.00 0.00 0.00 2.24
191 195 9.587772 GATGTAAAAGTGTGTGTATGATCTAGT 57.412 33.333 0.00 0.00 0.00 2.57
192 196 9.809096 AGATGTAAAAGTGTGTGTATGATCTAG 57.191 33.333 0.00 0.00 0.00 2.43
194 198 8.939929 CAAGATGTAAAAGTGTGTGTATGATCT 58.060 33.333 0.00 0.00 0.00 2.75
195 199 8.177663 CCAAGATGTAAAAGTGTGTGTATGATC 58.822 37.037 0.00 0.00 0.00 2.92
196 200 7.665559 ACCAAGATGTAAAAGTGTGTGTATGAT 59.334 33.333 0.00 0.00 0.00 2.45
197 201 6.995686 ACCAAGATGTAAAAGTGTGTGTATGA 59.004 34.615 0.00 0.00 0.00 2.15
198 202 7.077605 CACCAAGATGTAAAAGTGTGTGTATG 58.922 38.462 0.00 0.00 0.00 2.39
199 203 6.206634 CCACCAAGATGTAAAAGTGTGTGTAT 59.793 38.462 0.00 0.00 0.00 2.29
200 204 5.529430 CCACCAAGATGTAAAAGTGTGTGTA 59.471 40.000 0.00 0.00 0.00 2.90
201 205 4.338118 CCACCAAGATGTAAAAGTGTGTGT 59.662 41.667 0.00 0.00 0.00 3.72
202 206 4.792704 GCCACCAAGATGTAAAAGTGTGTG 60.793 45.833 0.00 0.00 0.00 3.82
203 207 3.317993 GCCACCAAGATGTAAAAGTGTGT 59.682 43.478 0.00 0.00 0.00 3.72
204 208 3.317711 TGCCACCAAGATGTAAAAGTGTG 59.682 43.478 0.00 0.00 0.00 3.82
205 209 3.317993 GTGCCACCAAGATGTAAAAGTGT 59.682 43.478 0.00 0.00 0.00 3.55
206 210 3.317711 TGTGCCACCAAGATGTAAAAGTG 59.682 43.478 0.00 0.00 0.00 3.16
207 211 3.561143 TGTGCCACCAAGATGTAAAAGT 58.439 40.909 0.00 0.00 0.00 2.66
208 212 4.582701 TTGTGCCACCAAGATGTAAAAG 57.417 40.909 0.00 0.00 0.00 2.27
209 213 4.404073 ACTTTGTGCCACCAAGATGTAAAA 59.596 37.500 14.91 0.00 0.00 1.52
210 214 3.957497 ACTTTGTGCCACCAAGATGTAAA 59.043 39.130 14.91 0.00 0.00 2.01
211 215 3.561143 ACTTTGTGCCACCAAGATGTAA 58.439 40.909 14.91 0.00 0.00 2.41
212 216 3.222173 ACTTTGTGCCACCAAGATGTA 57.778 42.857 14.91 0.00 0.00 2.29
213 217 2.071778 ACTTTGTGCCACCAAGATGT 57.928 45.000 14.91 0.00 0.00 3.06
214 218 2.095768 CGTACTTTGTGCCACCAAGATG 60.096 50.000 14.91 1.44 0.00 2.90
215 219 2.151202 CGTACTTTGTGCCACCAAGAT 58.849 47.619 14.91 3.07 0.00 2.40
216 220 1.588674 CGTACTTTGTGCCACCAAGA 58.411 50.000 14.91 0.00 0.00 3.02
217 221 0.040425 GCGTACTTTGTGCCACCAAG 60.040 55.000 7.09 7.09 0.00 3.61
218 222 0.748367 TGCGTACTTTGTGCCACCAA 60.748 50.000 0.00 0.00 0.00 3.67
219 223 0.748367 TTGCGTACTTTGTGCCACCA 60.748 50.000 0.00 0.00 0.00 4.17
220 224 0.040425 CTTGCGTACTTTGTGCCACC 60.040 55.000 0.00 0.00 0.00 4.61
221 225 0.040425 CCTTGCGTACTTTGTGCCAC 60.040 55.000 0.00 0.00 0.00 5.01
222 226 0.464735 ACCTTGCGTACTTTGTGCCA 60.465 50.000 0.00 0.00 0.00 4.92
223 227 0.237498 GACCTTGCGTACTTTGTGCC 59.763 55.000 0.00 0.00 0.00 5.01
224 228 0.941542 TGACCTTGCGTACTTTGTGC 59.058 50.000 0.00 0.00 0.00 4.57
225 229 3.364964 GGAATGACCTTGCGTACTTTGTG 60.365 47.826 0.00 0.00 35.41 3.33
226 230 2.812011 GGAATGACCTTGCGTACTTTGT 59.188 45.455 0.00 0.00 35.41 2.83
227 231 2.159707 CGGAATGACCTTGCGTACTTTG 60.160 50.000 0.00 0.00 42.96 2.77
228 232 2.073816 CGGAATGACCTTGCGTACTTT 58.926 47.619 0.00 0.00 42.96 2.66
229 233 1.722011 CGGAATGACCTTGCGTACTT 58.278 50.000 0.00 0.00 42.96 2.24
230 234 3.436001 CGGAATGACCTTGCGTACT 57.564 52.632 0.00 0.00 42.96 2.73
241 245 1.618837 GCCTATGCCTAGTCGGAATGA 59.381 52.381 0.00 0.00 31.53 2.57
242 246 1.670087 CGCCTATGCCTAGTCGGAATG 60.670 57.143 0.00 0.00 31.53 2.67
243 247 0.603569 CGCCTATGCCTAGTCGGAAT 59.396 55.000 0.00 0.00 34.45 3.01
244 248 2.038690 CGCCTATGCCTAGTCGGAA 58.961 57.895 0.00 0.00 33.16 4.30
245 249 2.561956 GCGCCTATGCCTAGTCGGA 61.562 63.158 0.00 0.00 33.16 4.55
246 250 2.049063 GCGCCTATGCCTAGTCGG 60.049 66.667 0.00 0.00 27.41 4.79
247 251 2.429236 CGCGCCTATGCCTAGTCG 60.429 66.667 0.00 0.00 29.78 4.18
248 252 2.049063 CCGCGCCTATGCCTAGTC 60.049 66.667 0.00 0.00 0.00 2.59
249 253 4.301027 GCCGCGCCTATGCCTAGT 62.301 66.667 0.00 0.00 0.00 2.57
250 254 3.521529 AAGCCGCGCCTATGCCTAG 62.522 63.158 0.00 0.00 0.00 3.02
251 255 3.515316 GAAGCCGCGCCTATGCCTA 62.515 63.158 0.00 0.00 0.00 3.93
252 256 4.918201 GAAGCCGCGCCTATGCCT 62.918 66.667 0.00 0.00 0.00 4.75
255 259 1.891060 GAATCGAAGCCGCGCCTATG 61.891 60.000 0.00 0.00 35.37 2.23
256 260 1.664965 GAATCGAAGCCGCGCCTAT 60.665 57.895 0.00 0.00 35.37 2.57
257 261 2.279252 GAATCGAAGCCGCGCCTA 60.279 61.111 0.00 0.00 35.37 3.93
258 262 3.740128 ATGAATCGAAGCCGCGCCT 62.740 57.895 0.00 0.00 35.37 5.52
259 263 2.701878 GAATGAATCGAAGCCGCGCC 62.702 60.000 0.00 0.00 35.37 6.53
260 264 1.368137 GAATGAATCGAAGCCGCGC 60.368 57.895 0.00 0.00 35.37 6.86
261 265 0.583438 ATGAATGAATCGAAGCCGCG 59.417 50.000 0.00 0.00 35.37 6.46
262 266 1.599071 TGATGAATGAATCGAAGCCGC 59.401 47.619 0.00 0.00 35.37 6.53
263 267 4.687948 AGTATGATGAATGAATCGAAGCCG 59.312 41.667 0.00 0.00 37.07 5.52
264 268 6.369005 CAAGTATGATGAATGAATCGAAGCC 58.631 40.000 0.00 0.00 0.00 4.35
265 269 5.850128 GCAAGTATGATGAATGAATCGAAGC 59.150 40.000 0.00 0.00 0.00 3.86
266 270 7.070183 CAGCAAGTATGATGAATGAATCGAAG 58.930 38.462 0.00 0.00 45.81 3.79
267 271 6.512253 GCAGCAAGTATGATGAATGAATCGAA 60.512 38.462 0.00 0.00 45.81 3.71
268 272 5.049886 GCAGCAAGTATGATGAATGAATCGA 60.050 40.000 0.00 0.00 45.81 3.59
269 273 5.049612 AGCAGCAAGTATGATGAATGAATCG 60.050 40.000 0.00 0.00 45.81 3.34
270 274 6.315091 AGCAGCAAGTATGATGAATGAATC 57.685 37.500 0.00 0.00 45.81 2.52
271 275 6.461092 CCAAGCAGCAAGTATGATGAATGAAT 60.461 38.462 0.00 0.00 45.81 2.57
272 276 5.163591 CCAAGCAGCAAGTATGATGAATGAA 60.164 40.000 0.00 0.00 45.81 2.57
273 277 4.337274 CCAAGCAGCAAGTATGATGAATGA 59.663 41.667 0.00 0.00 45.81 2.57
274 278 4.097437 ACCAAGCAGCAAGTATGATGAATG 59.903 41.667 0.00 0.00 45.81 2.67
275 279 4.275810 ACCAAGCAGCAAGTATGATGAAT 58.724 39.130 0.00 0.00 45.81 2.57
276 280 3.689347 ACCAAGCAGCAAGTATGATGAA 58.311 40.909 0.00 0.00 45.81 2.57
277 281 3.273434 GACCAAGCAGCAAGTATGATGA 58.727 45.455 0.00 0.00 45.81 2.92
278 282 2.031314 CGACCAAGCAGCAAGTATGATG 59.969 50.000 0.00 0.00 45.70 3.07
279 283 2.283298 CGACCAAGCAGCAAGTATGAT 58.717 47.619 0.00 0.00 0.00 2.45
280 284 1.725641 CGACCAAGCAGCAAGTATGA 58.274 50.000 0.00 0.00 0.00 2.15
281 285 0.097674 GCGACCAAGCAGCAAGTATG 59.902 55.000 0.00 0.00 37.05 2.39
282 286 0.036010 AGCGACCAAGCAGCAAGTAT 60.036 50.000 0.00 0.00 40.15 2.12
283 287 0.606096 TAGCGACCAAGCAGCAAGTA 59.394 50.000 0.00 0.00 40.15 2.24
284 288 0.036010 ATAGCGACCAAGCAGCAAGT 60.036 50.000 0.00 0.00 40.15 3.16
285 289 0.376152 CATAGCGACCAAGCAGCAAG 59.624 55.000 0.00 0.00 40.15 4.01
286 290 1.026182 CCATAGCGACCAAGCAGCAA 61.026 55.000 0.00 0.00 40.15 3.91
287 291 1.450134 CCATAGCGACCAAGCAGCA 60.450 57.895 0.00 0.00 40.15 4.41
288 292 0.744414 TTCCATAGCGACCAAGCAGC 60.744 55.000 0.00 0.00 40.15 5.25
289 293 1.398390 GTTTCCATAGCGACCAAGCAG 59.602 52.381 0.00 0.00 40.15 4.24
290 294 1.271108 TGTTTCCATAGCGACCAAGCA 60.271 47.619 0.00 0.00 40.15 3.91
291 295 1.448985 TGTTTCCATAGCGACCAAGC 58.551 50.000 0.00 0.00 37.41 4.01
292 296 3.751175 TCTTTGTTTCCATAGCGACCAAG 59.249 43.478 0.00 0.00 0.00 3.61
293 297 3.745799 TCTTTGTTTCCATAGCGACCAA 58.254 40.909 0.00 0.00 0.00 3.67
294 298 3.410631 TCTTTGTTTCCATAGCGACCA 57.589 42.857 0.00 0.00 0.00 4.02
295 299 4.759516 TTTCTTTGTTTCCATAGCGACC 57.240 40.909 0.00 0.00 0.00 4.79
296 300 4.558860 GCATTTCTTTGTTTCCATAGCGAC 59.441 41.667 0.00 0.00 0.00 5.19
297 301 4.458989 AGCATTTCTTTGTTTCCATAGCGA 59.541 37.500 0.00 0.00 0.00 4.93
298 302 4.737054 AGCATTTCTTTGTTTCCATAGCG 58.263 39.130 0.00 0.00 0.00 4.26
299 303 6.268566 CCTAGCATTTCTTTGTTTCCATAGC 58.731 40.000 0.00 0.00 0.00 2.97
300 304 6.378280 ACCCTAGCATTTCTTTGTTTCCATAG 59.622 38.462 0.00 0.00 0.00 2.23
301 305 6.152661 CACCCTAGCATTTCTTTGTTTCCATA 59.847 38.462 0.00 0.00 0.00 2.74
302 306 5.047092 CACCCTAGCATTTCTTTGTTTCCAT 60.047 40.000 0.00 0.00 0.00 3.41
303 307 4.280677 CACCCTAGCATTTCTTTGTTTCCA 59.719 41.667 0.00 0.00 0.00 3.53
304 308 4.280929 ACACCCTAGCATTTCTTTGTTTCC 59.719 41.667 0.00 0.00 0.00 3.13
305 309 5.241728 AGACACCCTAGCATTTCTTTGTTTC 59.758 40.000 0.00 0.00 0.00 2.78
306 310 5.010012 CAGACACCCTAGCATTTCTTTGTTT 59.990 40.000 0.00 0.00 0.00 2.83
307 311 4.520492 CAGACACCCTAGCATTTCTTTGTT 59.480 41.667 0.00 0.00 0.00 2.83
308 312 4.074970 CAGACACCCTAGCATTTCTTTGT 58.925 43.478 0.00 0.00 0.00 2.83
309 313 3.441572 CCAGACACCCTAGCATTTCTTTG 59.558 47.826 0.00 0.00 0.00 2.77
310 314 3.330701 TCCAGACACCCTAGCATTTCTTT 59.669 43.478 0.00 0.00 0.00 2.52
311 315 2.912956 TCCAGACACCCTAGCATTTCTT 59.087 45.455 0.00 0.00 0.00 2.52
312 316 2.237392 GTCCAGACACCCTAGCATTTCT 59.763 50.000 0.00 0.00 0.00 2.52
313 317 2.633488 GTCCAGACACCCTAGCATTTC 58.367 52.381 0.00 0.00 0.00 2.17
314 318 1.066143 CGTCCAGACACCCTAGCATTT 60.066 52.381 0.00 0.00 0.00 2.32
315 319 0.537188 CGTCCAGACACCCTAGCATT 59.463 55.000 0.00 0.00 0.00 3.56
316 320 1.961180 GCGTCCAGACACCCTAGCAT 61.961 60.000 0.00 0.00 0.00 3.79
317 321 2.646175 GCGTCCAGACACCCTAGCA 61.646 63.158 0.00 0.00 0.00 3.49
318 322 2.184579 GCGTCCAGACACCCTAGC 59.815 66.667 0.00 0.00 0.00 3.42
319 323 1.215647 GTGCGTCCAGACACCCTAG 59.784 63.158 0.00 0.00 0.00 3.02
320 324 2.632544 CGTGCGTCCAGACACCCTA 61.633 63.158 0.00 0.00 33.09 3.53
321 325 3.991051 CGTGCGTCCAGACACCCT 61.991 66.667 0.00 0.00 33.09 4.34
323 327 3.509137 TTCCGTGCGTCCAGACACC 62.509 63.158 0.00 0.00 33.09 4.16
324 328 2.028484 TTCCGTGCGTCCAGACAC 59.972 61.111 0.00 0.00 0.00 3.67
325 329 2.028484 GTTCCGTGCGTCCAGACA 59.972 61.111 0.00 0.00 0.00 3.41
326 330 1.593209 TTGTTCCGTGCGTCCAGAC 60.593 57.895 0.00 0.00 0.00 3.51
327 331 1.593209 GTTGTTCCGTGCGTCCAGA 60.593 57.895 0.00 0.00 0.00 3.86
328 332 1.433053 TTGTTGTTCCGTGCGTCCAG 61.433 55.000 0.00 0.00 0.00 3.86
329 333 1.025113 TTTGTTGTTCCGTGCGTCCA 61.025 50.000 0.00 0.00 0.00 4.02
330 334 0.590481 GTTTGTTGTTCCGTGCGTCC 60.590 55.000 0.00 0.00 0.00 4.79
331 335 0.375803 AGTTTGTTGTTCCGTGCGTC 59.624 50.000 0.00 0.00 0.00 5.19
332 336 0.375803 GAGTTTGTTGTTCCGTGCGT 59.624 50.000 0.00 0.00 0.00 5.24
333 337 0.375454 TGAGTTTGTTGTTCCGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
334 338 2.182014 GTTGAGTTTGTTGTTCCGTGC 58.818 47.619 0.00 0.00 0.00 5.34
335 339 3.479505 TGTTGAGTTTGTTGTTCCGTG 57.520 42.857 0.00 0.00 0.00 4.94
336 340 3.504520 AGTTGTTGAGTTTGTTGTTCCGT 59.495 39.130 0.00 0.00 0.00 4.69
337 341 4.091453 AGTTGTTGAGTTTGTTGTTCCG 57.909 40.909 0.00 0.00 0.00 4.30
338 342 4.857037 GTGAGTTGTTGAGTTTGTTGTTCC 59.143 41.667 0.00 0.00 0.00 3.62
339 343 5.699839 AGTGAGTTGTTGAGTTTGTTGTTC 58.300 37.500 0.00 0.00 0.00 3.18
340 344 5.705609 AGTGAGTTGTTGAGTTTGTTGTT 57.294 34.783 0.00 0.00 0.00 2.83
341 345 5.473504 AGAAGTGAGTTGTTGAGTTTGTTGT 59.526 36.000 0.00 0.00 0.00 3.32
342 346 5.942872 AGAAGTGAGTTGTTGAGTTTGTTG 58.057 37.500 0.00 0.00 0.00 3.33
343 347 5.705441 TGAGAAGTGAGTTGTTGAGTTTGTT 59.295 36.000 0.00 0.00 0.00 2.83
344 348 5.245531 TGAGAAGTGAGTTGTTGAGTTTGT 58.754 37.500 0.00 0.00 0.00 2.83
345 349 5.582269 TCTGAGAAGTGAGTTGTTGAGTTTG 59.418 40.000 0.00 0.00 0.00 2.93
346 350 5.734720 TCTGAGAAGTGAGTTGTTGAGTTT 58.265 37.500 0.00 0.00 0.00 2.66
347 351 5.344743 TCTGAGAAGTGAGTTGTTGAGTT 57.655 39.130 0.00 0.00 0.00 3.01
348 352 5.069648 TGATCTGAGAAGTGAGTTGTTGAGT 59.930 40.000 0.00 0.00 0.00 3.41
349 353 5.536260 TGATCTGAGAAGTGAGTTGTTGAG 58.464 41.667 0.00 0.00 0.00 3.02
350 354 5.535753 TGATCTGAGAAGTGAGTTGTTGA 57.464 39.130 0.00 0.00 0.00 3.18
351 355 5.121925 CCATGATCTGAGAAGTGAGTTGTTG 59.878 44.000 0.00 0.00 0.00 3.33
352 356 5.012458 TCCATGATCTGAGAAGTGAGTTGTT 59.988 40.000 0.00 0.00 0.00 2.83
353 357 4.529769 TCCATGATCTGAGAAGTGAGTTGT 59.470 41.667 0.00 0.00 0.00 3.32
354 358 5.082251 TCCATGATCTGAGAAGTGAGTTG 57.918 43.478 0.00 0.00 0.00 3.16
355 359 5.483231 TCTTCCATGATCTGAGAAGTGAGTT 59.517 40.000 14.63 0.00 35.43 3.01
356 360 5.022122 TCTTCCATGATCTGAGAAGTGAGT 58.978 41.667 14.63 0.00 35.43 3.41
357 361 5.127519 ACTCTTCCATGATCTGAGAAGTGAG 59.872 44.000 19.05 12.96 35.43 3.51
358 362 5.022122 ACTCTTCCATGATCTGAGAAGTGA 58.978 41.667 19.05 5.35 35.43 3.41
359 363 5.341872 ACTCTTCCATGATCTGAGAAGTG 57.658 43.478 14.63 14.45 35.43 3.16
360 364 5.732633 CAACTCTTCCATGATCTGAGAAGT 58.267 41.667 14.63 5.60 35.43 3.01
361 365 4.571580 GCAACTCTTCCATGATCTGAGAAG 59.428 45.833 10.93 10.93 35.32 2.85
362 366 4.511527 GCAACTCTTCCATGATCTGAGAA 58.488 43.478 0.00 0.00 0.00 2.87
363 367 3.429960 CGCAACTCTTCCATGATCTGAGA 60.430 47.826 0.00 0.00 0.00 3.27
364 368 2.864946 CGCAACTCTTCCATGATCTGAG 59.135 50.000 0.00 0.00 0.00 3.35
365 369 2.497273 TCGCAACTCTTCCATGATCTGA 59.503 45.455 0.00 0.00 0.00 3.27
366 370 2.864946 CTCGCAACTCTTCCATGATCTG 59.135 50.000 0.00 0.00 0.00 2.90
367 371 2.762887 TCTCGCAACTCTTCCATGATCT 59.237 45.455 0.00 0.00 0.00 2.75
368 372 3.122297 CTCTCGCAACTCTTCCATGATC 58.878 50.000 0.00 0.00 0.00 2.92
369 373 2.499289 ACTCTCGCAACTCTTCCATGAT 59.501 45.455 0.00 0.00 0.00 2.45
370 374 1.895798 ACTCTCGCAACTCTTCCATGA 59.104 47.619 0.00 0.00 0.00 3.07
371 375 1.998315 CACTCTCGCAACTCTTCCATG 59.002 52.381 0.00 0.00 0.00 3.66
372 376 1.066573 CCACTCTCGCAACTCTTCCAT 60.067 52.381 0.00 0.00 0.00 3.41
373 377 0.318441 CCACTCTCGCAACTCTTCCA 59.682 55.000 0.00 0.00 0.00 3.53
374 378 1.016653 GCCACTCTCGCAACTCTTCC 61.017 60.000 0.00 0.00 0.00 3.46
375 379 0.319900 TGCCACTCTCGCAACTCTTC 60.320 55.000 0.00 0.00 32.05 2.87
376 380 0.601311 GTGCCACTCTCGCAACTCTT 60.601 55.000 0.00 0.00 38.13 2.85
377 381 1.005630 GTGCCACTCTCGCAACTCT 60.006 57.895 0.00 0.00 38.13 3.24
378 382 1.300931 TGTGCCACTCTCGCAACTC 60.301 57.895 0.00 0.00 38.13 3.01
379 383 1.595382 GTGTGCCACTCTCGCAACT 60.595 57.895 0.00 0.00 38.13 3.16
380 384 2.607892 GGTGTGCCACTCTCGCAAC 61.608 63.158 0.00 0.00 38.13 4.17
381 385 2.280797 GGTGTGCCACTCTCGCAA 60.281 61.111 0.00 0.00 38.13 4.85
382 386 4.662961 CGGTGTGCCACTCTCGCA 62.663 66.667 0.00 0.00 34.40 5.10
384 388 3.939837 ATGCGGTGTGCCACTCTCG 62.940 63.158 0.00 0.19 45.60 4.04
385 389 2.046892 ATGCGGTGTGCCACTCTC 60.047 61.111 0.00 0.00 45.60 3.20
386 390 2.359107 CATGCGGTGTGCCACTCT 60.359 61.111 0.00 0.00 45.60 3.24
387 391 2.358615 TCATGCGGTGTGCCACTC 60.359 61.111 0.00 0.00 45.60 3.51
388 392 2.359107 CTCATGCGGTGTGCCACT 60.359 61.111 0.00 0.00 45.60 4.00
389 393 2.260869 AACTCATGCGGTGTGCCAC 61.261 57.895 0.00 0.00 45.60 5.01
390 394 2.112928 AACTCATGCGGTGTGCCA 59.887 55.556 0.00 0.00 45.60 4.92
391 395 2.562912 CAACTCATGCGGTGTGCC 59.437 61.111 0.00 0.00 45.60 5.01
392 396 1.965930 TCCAACTCATGCGGTGTGC 60.966 57.895 0.00 0.00 46.70 4.57
393 397 1.868997 GTCCAACTCATGCGGTGTG 59.131 57.895 0.00 0.00 0.00 3.82
394 398 1.667830 CGTCCAACTCATGCGGTGT 60.668 57.895 0.00 0.00 0.00 4.16
395 399 1.227999 AACGTCCAACTCATGCGGTG 61.228 55.000 0.00 0.00 0.00 4.94
396 400 0.534203 AAACGTCCAACTCATGCGGT 60.534 50.000 0.00 0.00 0.00 5.68
397 401 1.127951 GTAAACGTCCAACTCATGCGG 59.872 52.381 0.00 0.00 0.00 5.69
398 402 1.795872 TGTAAACGTCCAACTCATGCG 59.204 47.619 0.00 0.00 0.00 4.73
399 403 3.435327 TGATGTAAACGTCCAACTCATGC 59.565 43.478 0.00 0.00 0.00 4.06
400 404 5.801350 ATGATGTAAACGTCCAACTCATG 57.199 39.130 0.00 0.00 0.00 3.07
401 405 6.817765 AAATGATGTAAACGTCCAACTCAT 57.182 33.333 0.00 0.00 0.00 2.90
402 406 6.627395 AAAATGATGTAAACGTCCAACTCA 57.373 33.333 0.00 0.00 0.00 3.41
403 407 8.447833 TCATAAAATGATGTAAACGTCCAACTC 58.552 33.333 0.00 0.00 33.59 3.01
404 408 8.330466 TCATAAAATGATGTAAACGTCCAACT 57.670 30.769 0.00 0.00 33.59 3.16
405 409 8.447833 TCTCATAAAATGATGTAAACGTCCAAC 58.552 33.333 0.00 0.00 38.85 3.77
406 410 8.554835 TCTCATAAAATGATGTAAACGTCCAA 57.445 30.769 0.00 0.00 38.85 3.53
407 411 8.038351 TCTCTCATAAAATGATGTAAACGTCCA 58.962 33.333 0.00 0.00 38.85 4.02
408 412 8.420374 TCTCTCATAAAATGATGTAAACGTCC 57.580 34.615 0.00 0.00 38.85 4.79
420 424 9.855361 CGCACTAAACTAATCTCTCATAAAATG 57.145 33.333 0.00 0.00 0.00 2.32
421 425 9.601217 ACGCACTAAACTAATCTCTCATAAAAT 57.399 29.630 0.00 0.00 0.00 1.82
422 426 8.869897 CACGCACTAAACTAATCTCTCATAAAA 58.130 33.333 0.00 0.00 0.00 1.52
423 427 8.033038 ACACGCACTAAACTAATCTCTCATAAA 58.967 33.333 0.00 0.00 0.00 1.40
424 428 7.488150 CACACGCACTAAACTAATCTCTCATAA 59.512 37.037 0.00 0.00 0.00 1.90
425 429 6.972901 CACACGCACTAAACTAATCTCTCATA 59.027 38.462 0.00 0.00 0.00 2.15
426 430 5.807520 CACACGCACTAAACTAATCTCTCAT 59.192 40.000 0.00 0.00 0.00 2.90
427 431 5.161358 CACACGCACTAAACTAATCTCTCA 58.839 41.667 0.00 0.00 0.00 3.27
428 432 5.162075 ACACACGCACTAAACTAATCTCTC 58.838 41.667 0.00 0.00 0.00 3.20
429 433 5.135508 ACACACGCACTAAACTAATCTCT 57.864 39.130 0.00 0.00 0.00 3.10
430 434 5.389516 CCAACACACGCACTAAACTAATCTC 60.390 44.000 0.00 0.00 0.00 2.75
431 435 4.451096 CCAACACACGCACTAAACTAATCT 59.549 41.667 0.00 0.00 0.00 2.40
432 436 4.212636 ACCAACACACGCACTAAACTAATC 59.787 41.667 0.00 0.00 0.00 1.75
433 437 4.024387 CACCAACACACGCACTAAACTAAT 60.024 41.667 0.00 0.00 0.00 1.73
434 438 3.310227 CACCAACACACGCACTAAACTAA 59.690 43.478 0.00 0.00 0.00 2.24
435 439 2.867368 CACCAACACACGCACTAAACTA 59.133 45.455 0.00 0.00 0.00 2.24
436 440 1.668751 CACCAACACACGCACTAAACT 59.331 47.619 0.00 0.00 0.00 2.66
437 441 1.858399 GCACCAACACACGCACTAAAC 60.858 52.381 0.00 0.00 0.00 2.01
438 442 0.378962 GCACCAACACACGCACTAAA 59.621 50.000 0.00 0.00 0.00 1.85
439 443 0.462937 AGCACCAACACACGCACTAA 60.463 50.000 0.00 0.00 0.00 2.24
440 444 1.145156 AGCACCAACACACGCACTA 59.855 52.632 0.00 0.00 0.00 2.74
441 445 2.124736 AGCACCAACACACGCACT 60.125 55.556 0.00 0.00 0.00 4.40
442 446 2.024588 CAGCACCAACACACGCAC 59.975 61.111 0.00 0.00 0.00 5.34
443 447 3.208383 CCAGCACCAACACACGCA 61.208 61.111 0.00 0.00 0.00 5.24
444 448 2.896801 CTCCAGCACCAACACACGC 61.897 63.158 0.00 0.00 0.00 5.34
445 449 1.523711 ACTCCAGCACCAACACACG 60.524 57.895 0.00 0.00 0.00 4.49
446 450 1.447317 CCACTCCAGCACCAACACAC 61.447 60.000 0.00 0.00 0.00 3.82
447 451 1.152984 CCACTCCAGCACCAACACA 60.153 57.895 0.00 0.00 0.00 3.72
448 452 2.555547 GCCACTCCAGCACCAACAC 61.556 63.158 0.00 0.00 0.00 3.32
449 453 1.414866 TAGCCACTCCAGCACCAACA 61.415 55.000 0.00 0.00 0.00 3.33
450 454 0.250727 TTAGCCACTCCAGCACCAAC 60.251 55.000 0.00 0.00 0.00 3.77
451 455 0.250727 GTTAGCCACTCCAGCACCAA 60.251 55.000 0.00 0.00 0.00 3.67
452 456 1.374947 GTTAGCCACTCCAGCACCA 59.625 57.895 0.00 0.00 0.00 4.17
453 457 1.741770 CGTTAGCCACTCCAGCACC 60.742 63.158 0.00 0.00 0.00 5.01
454 458 1.741770 CCGTTAGCCACTCCAGCAC 60.742 63.158 0.00 0.00 0.00 4.40
455 459 2.662596 CCGTTAGCCACTCCAGCA 59.337 61.111 0.00 0.00 0.00 4.41
456 460 1.972660 ATCCCGTTAGCCACTCCAGC 61.973 60.000 0.00 0.00 0.00 4.85
457 461 0.179073 CATCCCGTTAGCCACTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
458 462 0.907704 ACATCCCGTTAGCCACTCCA 60.908 55.000 0.00 0.00 0.00 3.86
459 463 0.252197 AACATCCCGTTAGCCACTCC 59.748 55.000 0.00 0.00 35.52 3.85
460 464 1.653151 GAACATCCCGTTAGCCACTC 58.347 55.000 0.00 0.00 38.19 3.51
461 465 0.108329 CGAACATCCCGTTAGCCACT 60.108 55.000 0.00 0.00 38.19 4.00
462 466 1.702491 GCGAACATCCCGTTAGCCAC 61.702 60.000 0.00 0.00 46.92 5.01
463 467 1.448893 GCGAACATCCCGTTAGCCA 60.449 57.895 0.00 0.00 46.92 4.75
464 468 3.406559 GCGAACATCCCGTTAGCC 58.593 61.111 0.00 0.00 46.92 3.93
474 478 1.812571 GGTGAACAAGGATGCGAACAT 59.187 47.619 0.00 0.00 39.98 2.71
475 479 1.202758 AGGTGAACAAGGATGCGAACA 60.203 47.619 0.00 0.00 0.00 3.18
476 480 1.523758 AGGTGAACAAGGATGCGAAC 58.476 50.000 0.00 0.00 0.00 3.95
477 481 2.151202 GAAGGTGAACAAGGATGCGAA 58.849 47.619 0.00 0.00 0.00 4.70
478 482 1.347707 AGAAGGTGAACAAGGATGCGA 59.652 47.619 0.00 0.00 0.00 5.10
479 483 1.813513 AGAAGGTGAACAAGGATGCG 58.186 50.000 0.00 0.00 0.00 4.73
480 484 7.391148 TTTATAAGAAGGTGAACAAGGATGC 57.609 36.000 0.00 0.00 0.00 3.91
512 516 9.485206 GGCGTACCATATTTTTATAGAAGAGAA 57.515 33.333 0.00 0.00 35.26 2.87
513 517 8.644216 TGGCGTACCATATTTTTATAGAAGAGA 58.356 33.333 0.00 0.00 42.67 3.10
514 518 8.827177 TGGCGTACCATATTTTTATAGAAGAG 57.173 34.615 0.00 0.00 42.67 2.85
533 537 2.488937 TCAAGAGTACGTCAATGGCGTA 59.511 45.455 16.56 16.56 42.85 4.42
534 538 1.271379 TCAAGAGTACGTCAATGGCGT 59.729 47.619 19.02 19.02 45.11 5.68
535 539 1.990799 TCAAGAGTACGTCAATGGCG 58.009 50.000 5.42 5.42 0.00 5.69
536 540 4.451096 TCTTTTCAAGAGTACGTCAATGGC 59.549 41.667 0.00 0.00 32.71 4.40
537 541 6.539649 TTCTTTTCAAGAGTACGTCAATGG 57.460 37.500 0.00 0.00 39.03 3.16
538 542 8.734030 GTTTTTCTTTTCAAGAGTACGTCAATG 58.266 33.333 0.00 0.00 39.03 2.82
539 543 8.455682 TGTTTTTCTTTTCAAGAGTACGTCAAT 58.544 29.630 0.00 0.00 39.03 2.57
540 544 7.808672 TGTTTTTCTTTTCAAGAGTACGTCAA 58.191 30.769 0.00 0.00 39.03 3.18
541 545 7.367159 TGTTTTTCTTTTCAAGAGTACGTCA 57.633 32.000 0.00 0.00 39.03 4.35
542 546 8.120465 TGATGTTTTTCTTTTCAAGAGTACGTC 58.880 33.333 0.00 0.00 39.03 4.34
543 547 7.981142 TGATGTTTTTCTTTTCAAGAGTACGT 58.019 30.769 0.00 0.00 39.03 3.57
544 548 8.734030 GTTGATGTTTTTCTTTTCAAGAGTACG 58.266 33.333 0.00 0.00 39.03 3.67
545 549 9.567848 TGTTGATGTTTTTCTTTTCAAGAGTAC 57.432 29.630 0.00 0.00 39.03 2.73
546 550 9.787532 CTGTTGATGTTTTTCTTTTCAAGAGTA 57.212 29.630 0.00 0.00 39.03 2.59
547 551 7.276438 GCTGTTGATGTTTTTCTTTTCAAGAGT 59.724 33.333 9.07 0.00 38.94 3.24
548 552 7.490402 AGCTGTTGATGTTTTTCTTTTCAAGAG 59.510 33.333 0.00 0.00 39.41 2.85
549 553 7.322664 AGCTGTTGATGTTTTTCTTTTCAAGA 58.677 30.769 0.00 0.00 35.26 3.02
550 554 7.529880 AGCTGTTGATGTTTTTCTTTTCAAG 57.470 32.000 0.00 0.00 0.00 3.02
551 555 7.903995 AAGCTGTTGATGTTTTTCTTTTCAA 57.096 28.000 0.00 0.00 0.00 2.69
552 556 9.033481 CATAAGCTGTTGATGTTTTTCTTTTCA 57.967 29.630 0.00 0.00 0.00 2.69
553 557 8.006027 GCATAAGCTGTTGATGTTTTTCTTTTC 58.994 33.333 0.00 0.00 37.91 2.29
554 558 7.306749 CGCATAAGCTGTTGATGTTTTTCTTTT 60.307 33.333 0.00 0.00 39.10 2.27
555 559 6.144402 CGCATAAGCTGTTGATGTTTTTCTTT 59.856 34.615 0.00 0.00 39.10 2.52
556 560 5.630680 CGCATAAGCTGTTGATGTTTTTCTT 59.369 36.000 0.00 0.00 39.10 2.52
557 561 5.048782 TCGCATAAGCTGTTGATGTTTTTCT 60.049 36.000 0.00 0.00 39.10 2.52
558 562 5.153513 TCGCATAAGCTGTTGATGTTTTTC 58.846 37.500 0.00 0.00 39.10 2.29
559 563 5.119931 TCGCATAAGCTGTTGATGTTTTT 57.880 34.783 0.00 0.00 39.10 1.94
560 564 4.764679 TCGCATAAGCTGTTGATGTTTT 57.235 36.364 0.00 0.00 39.10 2.43
561 565 4.665212 CATCGCATAAGCTGTTGATGTTT 58.335 39.130 0.00 0.00 36.21 2.83
562 566 3.488047 GCATCGCATAAGCTGTTGATGTT 60.488 43.478 13.04 0.00 39.77 2.71
563 567 2.032550 GCATCGCATAAGCTGTTGATGT 59.967 45.455 13.04 0.00 39.77 3.06
564 568 2.289820 AGCATCGCATAAGCTGTTGATG 59.710 45.455 9.19 9.19 40.18 3.07
565 569 2.569059 AGCATCGCATAAGCTGTTGAT 58.431 42.857 0.00 0.00 37.20 2.57
566 570 2.028420 AGCATCGCATAAGCTGTTGA 57.972 45.000 0.00 0.00 37.20 3.18
567 571 5.791367 ATATAGCATCGCATAAGCTGTTG 57.209 39.130 0.00 0.00 39.30 3.33
568 572 7.604164 AGTTAATATAGCATCGCATAAGCTGTT 59.396 33.333 0.00 0.00 39.30 3.16
569 573 7.099764 AGTTAATATAGCATCGCATAAGCTGT 58.900 34.615 0.00 0.00 39.30 4.40
570 574 7.531280 AGTTAATATAGCATCGCATAAGCTG 57.469 36.000 0.00 0.00 39.30 4.24
571 575 9.469807 GATAGTTAATATAGCATCGCATAAGCT 57.530 33.333 0.00 0.00 42.14 3.74
572 576 9.469807 AGATAGTTAATATAGCATCGCATAAGC 57.530 33.333 0.00 0.00 37.42 3.09
576 580 9.307121 GTCAAGATAGTTAATATAGCATCGCAT 57.693 33.333 0.00 0.00 0.00 4.73
577 581 7.759886 GGTCAAGATAGTTAATATAGCATCGCA 59.240 37.037 0.00 0.00 0.00 5.10
645 652 1.202245 GCAAGTGTGGAGCGACAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
646 653 0.380378 GCAAGTGTGGAGCGACAAAA 59.620 50.000 0.00 0.00 0.00 2.44
647 654 0.463654 AGCAAGTGTGGAGCGACAAA 60.464 50.000 0.00 0.00 0.00 2.83
648 655 1.146041 AGCAAGTGTGGAGCGACAA 59.854 52.632 0.00 0.00 0.00 3.18
649 656 1.595109 CAGCAAGTGTGGAGCGACA 60.595 57.895 0.00 0.00 0.00 4.35
650 657 2.320587 CCAGCAAGTGTGGAGCGAC 61.321 63.158 0.00 0.00 37.23 5.19
651 658 2.031012 CCAGCAAGTGTGGAGCGA 59.969 61.111 0.00 0.00 37.23 4.93
768 789 4.022589 CACATTTGATCAGAACACTTGCCT 60.023 41.667 0.00 0.00 0.00 4.75
936 964 0.675633 GTGTGAAGCAAATGGTGGCT 59.324 50.000 0.00 0.00 43.46 4.75
944 972 2.938451 CAGTGAGTGAGTGTGAAGCAAA 59.062 45.455 0.00 0.00 0.00 3.68
980 1008 1.493950 GGATGCTGGCTTGACGATCG 61.494 60.000 14.88 14.88 0.00 3.69
1027 1055 2.127708 GACCAAGGTGGGGATGAGTAT 58.872 52.381 0.00 0.00 43.37 2.12
1057 1085 3.838565 TCTTGCCAGAGAGGAGGTATAG 58.161 50.000 0.00 0.00 41.22 1.31
1088 1119 0.813184 CAATCTGCGCTTCCCATTGT 59.187 50.000 9.73 0.00 0.00 2.71
1266 1297 1.539065 CGGGATTTCATCACCTCCTCG 60.539 57.143 0.00 0.00 0.00 4.63
1509 1552 1.285950 CTCGCTCAGGTCAACGACA 59.714 57.895 0.00 0.00 33.68 4.35
1719 1762 1.609783 CCTCGCCTTCCCTTCCAAT 59.390 57.895 0.00 0.00 0.00 3.16
1752 1795 2.758327 TCGACCATCCCGTCCAGG 60.758 66.667 0.00 0.00 40.63 4.45
1835 1878 2.525248 CGGTGATCATTGCCGTCGG 61.525 63.158 13.60 6.99 40.53 4.79
1920 1963 6.039270 CCAAGATAATGGCCTTAATTTCGACA 59.961 38.462 3.32 0.00 32.78 4.35
1964 2009 9.932699 ATAGTACTATATCAATTCGTGCGATAC 57.067 33.333 13.88 0.00 0.00 2.24
2016 2081 0.672091 TTAGCAGCGCCGATCAACAA 60.672 50.000 2.29 0.00 0.00 2.83
2022 2087 1.331756 CTGATTTTTAGCAGCGCCGAT 59.668 47.619 2.29 0.00 0.00 4.18
2024 2089 0.447801 ACTGATTTTTAGCAGCGCCG 59.552 50.000 2.29 0.00 35.57 6.46
2025 2090 1.529826 CGACTGATTTTTAGCAGCGCC 60.530 52.381 2.29 0.00 35.57 6.53
2026 2091 1.393539 TCGACTGATTTTTAGCAGCGC 59.606 47.619 0.00 0.00 35.57 5.92
2027 2092 2.668457 AGTCGACTGATTTTTAGCAGCG 59.332 45.455 19.30 0.00 35.57 5.18
2028 2093 3.241804 CGAGTCGACTGATTTTTAGCAGC 60.242 47.826 25.58 2.16 35.57 5.25
2029 2094 4.166523 TCGAGTCGACTGATTTTTAGCAG 58.833 43.478 25.58 2.20 38.10 4.24
2030 2095 4.166523 CTCGAGTCGACTGATTTTTAGCA 58.833 43.478 25.58 0.00 0.00 3.49
2031 2096 4.167268 ACTCGAGTCGACTGATTTTTAGC 58.833 43.478 25.58 3.76 0.00 3.09
2032 2097 5.966503 CCTACTCGAGTCGACTGATTTTTAG 59.033 44.000 25.58 14.19 0.00 1.85
2033 2098 5.645067 TCCTACTCGAGTCGACTGATTTTTA 59.355 40.000 25.58 5.51 0.00 1.52
2035 2100 4.008330 TCCTACTCGAGTCGACTGATTTT 58.992 43.478 25.58 5.67 0.00 1.82
2036 2101 3.374678 GTCCTACTCGAGTCGACTGATTT 59.625 47.826 25.58 12.24 0.00 2.17
2037 2102 2.937799 GTCCTACTCGAGTCGACTGATT 59.062 50.000 25.58 16.10 0.00 2.57
2038 2103 2.093606 TGTCCTACTCGAGTCGACTGAT 60.094 50.000 30.54 7.73 32.08 2.90
2039 2104 1.274447 TGTCCTACTCGAGTCGACTGA 59.726 52.381 30.54 18.53 32.08 3.41
2042 2107 2.008329 ACATGTCCTACTCGAGTCGAC 58.992 52.381 27.06 27.06 0.00 4.20
2043 2108 2.398252 ACATGTCCTACTCGAGTCGA 57.602 50.000 23.89 16.01 0.00 4.20
2044 2109 2.537128 CGAACATGTCCTACTCGAGTCG 60.537 54.545 23.89 16.32 0.00 4.18
2045 2110 2.791849 GCGAACATGTCCTACTCGAGTC 60.792 54.545 23.89 8.30 0.00 3.36
2046 2111 1.132643 GCGAACATGTCCTACTCGAGT 59.867 52.381 23.66 23.66 0.00 4.18
2047 2112 1.828832 GCGAACATGTCCTACTCGAG 58.171 55.000 18.45 11.84 0.00 4.04
2053 2125 2.185867 GCCCGCGAACATGTCCTA 59.814 61.111 8.23 0.00 0.00 2.94
2575 2653 4.790962 CAGCAGCGTCCCTGGCAT 62.791 66.667 0.00 0.00 42.03 4.40
2679 2757 4.321675 GGTCAACATTTATTTTGGGACGCT 60.322 41.667 0.00 0.00 0.00 5.07
2794 2895 4.698780 TGTTTGCATCTTCTCTTCTCATGG 59.301 41.667 0.00 0.00 0.00 3.66
2828 2929 2.360475 GCCAGGTCAGGTGAAGGC 60.360 66.667 4.25 4.25 33.65 4.35
2835 2936 4.504916 CGAGCGAGCCAGGTCAGG 62.505 72.222 8.59 0.00 38.44 3.86
2838 2939 4.863925 GAGCGAGCGAGCCAGGTC 62.864 72.222 2.87 4.43 38.01 3.85
2910 5489 9.289782 AGAGTCAAAATGTAGCTAGTTCAAAAT 57.710 29.630 0.00 0.00 0.00 1.82
2987 5584 2.108362 CCCCACGCCCGAAGATAC 59.892 66.667 0.00 0.00 0.00 2.24
2988 5585 3.158648 CCCCCACGCCCGAAGATA 61.159 66.667 0.00 0.00 0.00 1.98
2996 5593 3.802852 AAACCTTCACCCCCACGCC 62.803 63.158 0.00 0.00 0.00 5.68
2997 5594 1.830847 AAAACCTTCACCCCCACGC 60.831 57.895 0.00 0.00 0.00 5.34
2998 5595 0.466555 TCAAAACCTTCACCCCCACG 60.467 55.000 0.00 0.00 0.00 4.94
2999 5596 1.783071 TTCAAAACCTTCACCCCCAC 58.217 50.000 0.00 0.00 0.00 4.61
3000 5597 2.552093 TTTCAAAACCTTCACCCCCA 57.448 45.000 0.00 0.00 0.00 4.96
3001 5598 2.969262 TCATTTCAAAACCTTCACCCCC 59.031 45.455 0.00 0.00 0.00 5.40
3002 5599 3.554960 GCTCATTTCAAAACCTTCACCCC 60.555 47.826 0.00 0.00 0.00 4.95
3003 5600 3.653344 GCTCATTTCAAAACCTTCACCC 58.347 45.455 0.00 0.00 0.00 4.61
3004 5601 3.308530 CGCTCATTTCAAAACCTTCACC 58.691 45.455 0.00 0.00 0.00 4.02
3005 5602 3.004315 TCCGCTCATTTCAAAACCTTCAC 59.996 43.478 0.00 0.00 0.00 3.18
3006 5603 3.004315 GTCCGCTCATTTCAAAACCTTCA 59.996 43.478 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.