Multiple sequence alignment - TraesCS1A01G172700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G172700 chr1A 100.000 4213 0 0 2405 6617 308574755 308570543 0.000000e+00 7781.0
1 TraesCS1A01G172700 chr1A 100.000 2156 0 0 1 2156 308577159 308575004 0.000000e+00 3982.0
2 TraesCS1A01G172700 chr1A 95.050 101 2 3 3567 3665 109415027 109415126 8.880000e-34 156.0
3 TraesCS1A01G172700 chr1D 96.975 1091 33 0 5527 6617 237145406 237144316 0.000000e+00 1832.0
4 TraesCS1A01G172700 chr1D 91.953 1106 69 13 4387 5487 237146860 237145770 0.000000e+00 1531.0
5 TraesCS1A01G172700 chr1D 86.100 1036 73 27 838 1851 237150072 237149086 0.000000e+00 1050.0
6 TraesCS1A01G172700 chr1D 86.441 649 77 6 2405 3048 237148524 237147882 0.000000e+00 701.0
7 TraesCS1A01G172700 chr1D 91.097 483 31 6 3920 4397 237147371 237146896 1.560000e-180 643.0
8 TraesCS1A01G172700 chr1D 93.427 213 11 2 3705 3915 237147627 237147416 4.980000e-81 313.0
9 TraesCS1A01G172700 chr1D 87.931 232 26 2 3217 3446 237147882 237147651 8.450000e-69 272.0
10 TraesCS1A01G172700 chr1B 93.548 1085 32 7 5538 6617 342647921 342648972 0.000000e+00 1581.0
11 TraesCS1A01G172700 chr1B 93.893 917 48 5 4584 5495 342647002 342647915 0.000000e+00 1376.0
12 TraesCS1A01G172700 chr1B 89.689 931 58 18 840 1758 342643465 342644369 0.000000e+00 1153.0
13 TraesCS1A01G172700 chr1B 85.000 1060 124 15 2405 3458 342644944 342645974 0.000000e+00 1044.0
14 TraesCS1A01G172700 chr1B 90.833 720 52 8 3683 4397 342645998 342646708 0.000000e+00 952.0
15 TraesCS1A01G172700 chr1B 88.350 206 22 2 4386 4589 342646744 342646949 5.120000e-61 246.0
16 TraesCS1A01G172700 chr1B 80.226 354 42 19 1782 2127 342644443 342644776 2.380000e-59 241.0
17 TraesCS1A01G172700 chr1B 88.000 75 8 1 3654 3728 451918606 451918533 3.290000e-13 87.9
18 TraesCS1A01G172700 chr1B 89.706 68 3 4 3654 3721 423590874 423590937 4.250000e-12 84.2
19 TraesCS1A01G172700 chr1B 91.837 49 4 0 171 219 656426043 656425995 1.190000e-07 69.4
20 TraesCS1A01G172700 chr2D 91.774 851 61 4 1 843 357974851 357974002 0.000000e+00 1175.0
21 TraesCS1A01G172700 chr2D 85.561 187 27 0 18 204 576965928 576966114 5.230000e-46 196.0
22 TraesCS1A01G172700 chr2D 100.000 29 0 0 3776 3804 19521977 19522005 3.000000e-03 54.7
23 TraesCS1A01G172700 chr5A 89.953 846 74 4 1 839 54468155 54468996 0.000000e+00 1081.0
24 TraesCS1A01G172700 chr5A 76.943 1132 171 54 4602 5690 551482485 551483569 4.480000e-156 562.0
25 TraesCS1A01G172700 chr5A 79.108 493 60 26 5218 5690 707724462 707723993 3.880000e-77 300.0
26 TraesCS1A01G172700 chr5A 87.149 249 27 3 3461 3706 436357169 436356923 1.820000e-70 278.0
27 TraesCS1A01G172700 chr2A 89.752 644 59 2 212 848 755047022 755046379 0.000000e+00 817.0
28 TraesCS1A01G172700 chr2A 93.860 114 6 1 3460 3573 342647398 342647510 3.170000e-38 171.0
29 TraesCS1A01G172700 chr2A 93.162 117 7 1 3461 3577 419206977 419206862 3.170000e-38 171.0
30 TraesCS1A01G172700 chr2A 90.141 71 5 2 3657 3726 1569673 1569604 2.540000e-14 91.6
31 TraesCS1A01G172700 chr2A 79.104 134 22 4 1819 1951 734343693 734343565 3.290000e-13 87.9
32 TraesCS1A01G172700 chr2A 86.842 76 9 1 3654 3729 374517294 374517368 4.250000e-12 84.2
33 TraesCS1A01G172700 chr7B 89.736 643 59 2 206 841 671022428 671021786 0.000000e+00 815.0
34 TraesCS1A01G172700 chr7B 93.197 147 10 0 3569 3715 414314451 414314597 4.020000e-52 217.0
35 TraesCS1A01G172700 chr7B 89.041 73 5 2 3654 3724 481070978 481070907 3.290000e-13 87.9
36 TraesCS1A01G172700 chrUn 89.441 644 60 3 206 841 147112019 147111376 0.000000e+00 806.0
37 TraesCS1A01G172700 chrUn 89.286 644 61 3 206 841 401084680 401085323 0.000000e+00 800.0
38 TraesCS1A01G172700 chrUn 89.130 644 62 3 206 841 410619618 410618975 0.000000e+00 795.0
39 TraesCS1A01G172700 chrUn 89.097 642 63 2 207 841 343348232 343347591 0.000000e+00 791.0
40 TraesCS1A01G172700 chrUn 90.141 71 5 2 3657 3726 11569663 11569594 2.540000e-14 91.6
41 TraesCS1A01G172700 chr4D 90.224 624 52 4 223 839 64724262 64724883 0.000000e+00 806.0
42 TraesCS1A01G172700 chr4D 88.166 169 19 1 1 169 438106425 438106592 4.050000e-47 200.0
43 TraesCS1A01G172700 chr4D 93.805 113 7 0 3461 3573 421405113 421405001 3.170000e-38 171.0
44 TraesCS1A01G172700 chr4D 90.323 124 12 0 3449 3572 77835458 77835581 5.310000e-36 163.0
45 TraesCS1A01G172700 chr4D 90.385 52 5 0 168 219 438106707 438106758 1.190000e-07 69.4
46 TraesCS1A01G172700 chr3B 86.467 702 91 2 1 701 17366591 17365893 0.000000e+00 767.0
47 TraesCS1A01G172700 chr3B 89.941 169 16 1 1 169 420406944 420406777 4.020000e-52 217.0
48 TraesCS1A01G172700 chr3B 88.806 134 11 3 3456 3588 257781946 257782076 1.910000e-35 161.0
49 TraesCS1A01G172700 chr3B 80.992 121 22 1 4386 4506 572249867 572249986 1.960000e-15 95.3
50 TraesCS1A01G172700 chr3B 93.878 49 3 0 171 219 420406659 420406611 2.560000e-09 75.0
51 TraesCS1A01G172700 chr3A 81.446 415 67 9 4602 5013 265370317 265370724 1.380000e-86 331.0
52 TraesCS1A01G172700 chr3A 89.837 246 21 2 3464 3706 750297335 750297091 4.980000e-81 313.0
53 TraesCS1A01G172700 chr3A 82.392 301 44 8 4716 5013 42681383 42681677 3.060000e-63 254.0
54 TraesCS1A01G172700 chr3A 92.958 71 5 0 3636 3706 636858685 636858755 3.260000e-18 104.0
55 TraesCS1A01G172700 chr3A 100.000 35 0 0 2525 2559 32163256 32163222 1.540000e-06 65.8
56 TraesCS1A01G172700 chr2B 86.634 202 26 1 18 218 693295572 693295773 8.640000e-54 222.0
57 TraesCS1A01G172700 chr2B 89.349 169 17 1 1 169 767765556 767765723 1.870000e-50 211.0
58 TraesCS1A01G172700 chr2B 89.855 138 14 0 3569 3706 677045425 677045562 1.900000e-40 178.0
59 TraesCS1A01G172700 chr2B 88.608 79 7 2 3654 3732 608226777 608226701 1.960000e-15 95.3
60 TraesCS1A01G172700 chr2B 89.855 69 6 1 3655 3723 504470137 504470070 3.290000e-13 87.9
61 TraesCS1A01G172700 chr5D 88.757 169 19 0 1 169 545982784 545982616 2.420000e-49 207.0
62 TraesCS1A01G172700 chr5D 87.770 139 13 2 3434 3572 562076323 562076189 6.870000e-35 159.0
63 TraesCS1A01G172700 chr5D 98.387 62 1 0 3645 3706 557210951 557210890 7.020000e-20 110.0
64 TraesCS1A01G172700 chr5B 83.173 208 33 2 3474 3681 478745838 478745633 8.760000e-44 189.0
65 TraesCS1A01G172700 chr5B 80.992 121 22 1 4386 4506 128359141 128359260 1.960000e-15 95.3
66 TraesCS1A01G172700 chr7A 97.849 93 2 0 3571 3663 126551903 126551995 1.910000e-35 161.0
67 TraesCS1A01G172700 chr7A 76.613 124 19 7 4388 4506 55017968 55018086 7.170000e-05 60.2
68 TraesCS1A01G172700 chr6A 93.519 108 5 2 3551 3656 1488507 1488400 6.870000e-35 159.0
69 TraesCS1A01G172700 chr3D 96.842 95 3 0 3569 3663 142089758 142089852 6.870000e-35 159.0
70 TraesCS1A01G172700 chr6B 91.667 72 5 1 3644 3715 533233236 533233166 1.520000e-16 99.0
71 TraesCS1A01G172700 chr6B 80.315 127 24 1 4386 4512 351230285 351230160 1.960000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G172700 chr1A 308570543 308577159 6616 True 5881.500000 7781 100.000000 1 6617 2 chr1A.!!$R1 6616
1 TraesCS1A01G172700 chr1D 237144316 237150072 5756 True 906.000000 1832 90.560571 838 6617 7 chr1D.!!$R1 5779
2 TraesCS1A01G172700 chr1B 342643465 342648972 5507 False 941.857143 1581 88.791286 840 6617 7 chr1B.!!$F2 5777
3 TraesCS1A01G172700 chr2D 357974002 357974851 849 True 1175.000000 1175 91.774000 1 843 1 chr2D.!!$R1 842
4 TraesCS1A01G172700 chr5A 54468155 54468996 841 False 1081.000000 1081 89.953000 1 839 1 chr5A.!!$F1 838
5 TraesCS1A01G172700 chr5A 551482485 551483569 1084 False 562.000000 562 76.943000 4602 5690 1 chr5A.!!$F2 1088
6 TraesCS1A01G172700 chr2A 755046379 755047022 643 True 817.000000 817 89.752000 212 848 1 chr2A.!!$R4 636
7 TraesCS1A01G172700 chr7B 671021786 671022428 642 True 815.000000 815 89.736000 206 841 1 chr7B.!!$R2 635
8 TraesCS1A01G172700 chrUn 147111376 147112019 643 True 806.000000 806 89.441000 206 841 1 chrUn.!!$R2 635
9 TraesCS1A01G172700 chrUn 401084680 401085323 643 False 800.000000 800 89.286000 206 841 1 chrUn.!!$F1 635
10 TraesCS1A01G172700 chrUn 410618975 410619618 643 True 795.000000 795 89.130000 206 841 1 chrUn.!!$R4 635
11 TraesCS1A01G172700 chrUn 343347591 343348232 641 True 791.000000 791 89.097000 207 841 1 chrUn.!!$R3 634
12 TraesCS1A01G172700 chr4D 64724262 64724883 621 False 806.000000 806 90.224000 223 839 1 chr4D.!!$F1 616
13 TraesCS1A01G172700 chr3B 17365893 17366591 698 True 767.000000 767 86.467000 1 701 1 chr3B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 261 0.109723 AGCGGGAAAAGCTACAACCA 59.890 50.0 0.00 0.0 44.05 3.67 F
1453 1474 0.325933 TTGGTGGCAGATGAGGACAG 59.674 55.0 0.00 0.0 0.00 3.51 F
1464 1485 0.539669 TGAGGACAGGAGAAGTCGCA 60.540 55.0 0.00 0.0 36.87 5.10 F
2657 2865 0.181350 GGGACTTGCTGGACCTATGG 59.819 60.0 0.00 0.0 0.00 2.74 F
2783 2991 0.108585 AAGGTCACGATGCACAAGGT 59.891 50.0 0.00 0.0 0.00 3.50 F
2784 2992 0.603707 AGGTCACGATGCACAAGGTG 60.604 55.0 0.00 0.0 36.51 4.00 F
3471 3689 0.608640 CTGCAAGTTACTCCCTCCGT 59.391 55.0 0.00 0.0 0.00 4.69 F
4981 5361 0.323999 TCATTGCTGCATGGCTTCCT 60.324 50.0 1.84 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2337 0.039978 AGCGCTTCTACGATCCGATG 60.040 55.000 2.64 0.0 34.06 3.84 R
2657 2865 0.101219 GCGGCAAATCAATGGAGGTC 59.899 55.000 0.00 0.0 0.00 3.85 R
2764 2972 0.108585 ACCTTGTGCATCGTGACCTT 59.891 50.000 0.00 0.0 0.00 3.50 R
4118 4379 0.031857 TGAAAATTGCCACGCCACAG 59.968 50.000 0.00 0.0 0.00 3.66 R
4120 4381 0.031994 AGTGAAAATTGCCACGCCAC 59.968 50.000 5.23 0.0 38.26 5.01 R
4125 4386 1.340889 TCCTGCAGTGAAAATTGCCAC 59.659 47.619 13.81 3.1 39.54 5.01 R
5196 5581 1.218047 GGCACGGTCTATCACTGCA 59.782 57.895 0.00 0.0 34.19 4.41 R
6418 7165 0.687757 AGGCCAACTCGCTCATCCTA 60.688 55.000 5.01 0.0 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.109735 GTAAGCTTCAACCCGCAAGC 60.110 55.000 0.00 0.00 44.63 4.01
119 120 6.538945 TCAACCCTACTTTTGAAAAGCTTT 57.461 33.333 16.96 5.69 0.00 3.51
124 125 6.610020 ACCCTACTTTTGAAAAGCTTTAACCT 59.390 34.615 16.96 0.00 0.00 3.50
154 156 1.577736 AGCTAGAACTGGCACCTCAT 58.422 50.000 12.22 0.00 39.73 2.90
163 165 0.324614 TGGCACCTCATCGTTGATGT 59.675 50.000 6.68 0.00 40.55 3.06
169 171 4.191544 CACCTCATCGTTGATGTAATGGT 58.808 43.478 6.68 8.13 40.55 3.55
210 212 0.679002 CGACCTTCACCGGTAGGAGA 60.679 60.000 26.98 9.33 41.02 3.71
257 261 0.109723 AGCGGGAAAAGCTACAACCA 59.890 50.000 0.00 0.00 44.05 3.67
260 264 2.227194 CGGGAAAAGCTACAACCAGTT 58.773 47.619 0.00 0.00 0.00 3.16
319 323 1.452145 AAGCAAATTGTGGTCGCCGT 61.452 50.000 0.00 0.00 36.79 5.68
320 324 1.729131 GCAAATTGTGGTCGCCGTG 60.729 57.895 0.00 0.00 0.00 4.94
321 325 1.945522 CAAATTGTGGTCGCCGTGA 59.054 52.632 0.00 0.00 0.00 4.35
335 339 1.202256 GCCGTGATGACTGTCGACATA 60.202 52.381 20.40 9.20 0.00 2.29
346 350 5.636121 TGACTGTCGACATAAATGGTTGTAC 59.364 40.000 20.40 1.18 0.00 2.90
359 363 2.569853 TGGTTGTACCGATTCCTGTCAT 59.430 45.455 0.00 0.00 42.58 3.06
465 469 4.166011 GCGACATGGTTGCGGCTC 62.166 66.667 0.00 0.00 33.04 4.70
468 472 3.950794 GACATGGTTGCGGCTCGGA 62.951 63.158 0.00 0.00 0.00 4.55
503 507 1.972872 CAACCTGAGCTTCACCTGTT 58.027 50.000 0.00 0.00 0.00 3.16
519 523 2.072298 CTGTTGTTGCTGAGAGCTACC 58.928 52.381 7.53 0.00 44.40 3.18
686 691 2.839632 ATGGGAGAGGATGCGCGA 60.840 61.111 12.10 0.00 0.00 5.87
707 712 1.482593 ACCGAGTGGGAGATGTGATTC 59.517 52.381 0.00 0.00 40.75 2.52
714 720 1.134401 GGGAGATGTGATTCCAGCGAA 60.134 52.381 0.00 0.00 35.09 4.70
723 729 4.578516 TGTGATTCCAGCGAAAAGAAGAAA 59.421 37.500 0.00 0.00 0.00 2.52
740 746 1.685355 AAAAAGCTGCGGGGCAAACT 61.685 50.000 0.00 0.00 38.41 2.66
867 880 3.504520 ACTACTGTTGGCCATTTTTACCG 59.495 43.478 6.09 0.00 0.00 4.02
947 960 3.464828 AGCCTTGGGAGGATAAGAAAGA 58.535 45.455 0.00 0.00 46.74 2.52
949 962 3.685835 GCCTTGGGAGGATAAGAAAGACC 60.686 52.174 0.00 0.00 46.74 3.85
961 974 3.941704 AGAAAGACCATGATCCCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
1046 1062 2.026641 CTCTCTTCTCCTCTCAGCCAG 58.973 57.143 0.00 0.00 0.00 4.85
1326 1342 3.443045 CTCCACCACGGGCATTGC 61.443 66.667 0.00 0.00 34.36 3.56
1350 1366 4.813296 GATTCCAATCGCCTTCGTATTT 57.187 40.909 0.00 0.00 36.96 1.40
1351 1367 4.773510 GATTCCAATCGCCTTCGTATTTC 58.226 43.478 0.00 0.00 36.96 2.17
1352 1368 3.536956 TCCAATCGCCTTCGTATTTCT 57.463 42.857 0.00 0.00 36.96 2.52
1353 1369 3.869065 TCCAATCGCCTTCGTATTTCTT 58.131 40.909 0.00 0.00 36.96 2.52
1354 1370 5.013568 TCCAATCGCCTTCGTATTTCTTA 57.986 39.130 0.00 0.00 36.96 2.10
1355 1371 4.807304 TCCAATCGCCTTCGTATTTCTTAC 59.193 41.667 0.00 0.00 36.96 2.34
1356 1372 4.809426 CCAATCGCCTTCGTATTTCTTACT 59.191 41.667 0.00 0.00 36.96 2.24
1357 1373 5.293569 CCAATCGCCTTCGTATTTCTTACTT 59.706 40.000 0.00 0.00 36.96 2.24
1358 1374 6.477688 CCAATCGCCTTCGTATTTCTTACTTA 59.522 38.462 0.00 0.00 36.96 2.24
1362 1378 9.754382 ATCGCCTTCGTATTTCTTACTTAATTA 57.246 29.630 0.00 0.00 36.96 1.40
1387 1403 5.576563 TGAGAGGAAATTTGTAGAACCCA 57.423 39.130 0.00 0.00 0.00 4.51
1392 1408 5.321927 AGGAAATTTGTAGAACCCAACGAT 58.678 37.500 0.00 0.00 0.00 3.73
1398 1414 2.492881 TGTAGAACCCAACGATCGCTAA 59.507 45.455 16.60 0.00 0.00 3.09
1399 1415 2.295253 AGAACCCAACGATCGCTAAG 57.705 50.000 16.60 4.57 0.00 2.18
1429 1445 3.476295 AAATAGACTCACGTCGCGTTA 57.524 42.857 5.77 0.00 44.93 3.18
1430 1446 3.476295 AATAGACTCACGTCGCGTTAA 57.524 42.857 5.77 0.00 44.93 2.01
1446 1467 3.731867 GCGTTAAGATTTGGTGGCAGATG 60.732 47.826 0.00 0.00 0.00 2.90
1450 1471 1.918262 AGATTTGGTGGCAGATGAGGA 59.082 47.619 0.00 0.00 0.00 3.71
1451 1472 2.019984 GATTTGGTGGCAGATGAGGAC 58.980 52.381 0.00 0.00 0.00 3.85
1452 1473 0.770499 TTTGGTGGCAGATGAGGACA 59.230 50.000 0.00 0.00 0.00 4.02
1453 1474 0.325933 TTGGTGGCAGATGAGGACAG 59.674 55.000 0.00 0.00 0.00 3.51
1454 1475 1.222936 GGTGGCAGATGAGGACAGG 59.777 63.158 0.00 0.00 0.00 4.00
1455 1476 1.267574 GGTGGCAGATGAGGACAGGA 61.268 60.000 0.00 0.00 0.00 3.86
1464 1485 0.539669 TGAGGACAGGAGAAGTCGCA 60.540 55.000 0.00 0.00 36.87 5.10
1469 1490 2.814336 GGACAGGAGAAGTCGCAATTTT 59.186 45.455 0.00 0.00 36.87 1.82
1486 1507 6.035975 CGCAATTTTAGATGGAATTTTGGTCC 59.964 38.462 0.00 0.00 35.55 4.46
1498 1519 8.073467 TGGAATTTTGGTCCCTATAAAATGAC 57.927 34.615 0.00 0.00 35.05 3.06
1544 1565 8.495361 TTGCTCAAATTTGATATTGGGAAATG 57.505 30.769 20.76 6.35 36.46 2.32
1560 1581 5.604650 TGGGAAATGTATTGGGTTTCACTTT 59.395 36.000 0.00 0.00 36.48 2.66
1561 1582 6.100424 TGGGAAATGTATTGGGTTTCACTTTT 59.900 34.615 0.00 0.00 36.48 2.27
1562 1583 6.995686 GGGAAATGTATTGGGTTTCACTTTTT 59.004 34.615 0.00 0.00 33.57 1.94
1588 1610 6.813649 TGATTCGATCAAATATACTAGCCAGC 59.186 38.462 0.00 0.00 36.11 4.85
1589 1611 5.984695 TCGATCAAATATACTAGCCAGCT 57.015 39.130 0.00 0.00 0.00 4.24
1598 1620 9.066892 CAAATATACTAGCCAGCTGGAAAATTA 57.933 33.333 37.21 18.77 37.39 1.40
1635 1657 6.872920 TGGGTTTAATTCTCCATACAAATGC 58.127 36.000 0.00 0.00 0.00 3.56
1652 1674 4.756084 AATGCTACTCTTGAACAACTGC 57.244 40.909 0.00 0.00 0.00 4.40
1667 1689 5.365021 ACAACTGCTGGAGATTAGCTAAT 57.635 39.130 18.92 18.92 41.66 1.73
1693 1720 8.904834 TGAATAGTGATAGTCTGAAGAAGGTAC 58.095 37.037 0.00 0.00 0.00 3.34
1797 1874 6.655003 AGAAGGAAGACATTGAATTAGCGAAA 59.345 34.615 0.00 0.00 0.00 3.46
1805 1882 6.866480 ACATTGAATTAGCGAAACCATCAAT 58.134 32.000 0.00 0.00 36.70 2.57
1807 1884 5.155509 TGAATTAGCGAAACCATCAATCG 57.844 39.130 0.00 0.00 39.47 3.34
1810 1887 1.297598 GCGAAACCATCAATCGGCG 60.298 57.895 0.00 0.00 37.08 6.46
1841 1918 2.568090 CACCAAGCAACATCGGCC 59.432 61.111 0.00 0.00 0.00 6.13
1868 2060 1.949799 ACAAGGGAGCTGACTGATCT 58.050 50.000 0.00 0.00 0.00 2.75
1883 2075 3.494626 ACTGATCTGCTTACAACACAACG 59.505 43.478 0.00 0.00 0.00 4.10
1894 2086 2.095213 ACAACACAACGCACACTACAAG 59.905 45.455 0.00 0.00 0.00 3.16
1895 2087 2.303163 ACACAACGCACACTACAAGA 57.697 45.000 0.00 0.00 0.00 3.02
1903 2095 3.063452 ACGCACACTACAAGAACACAAAG 59.937 43.478 0.00 0.00 0.00 2.77
1907 2099 6.090129 GCACACTACAAGAACACAAAGAAAA 58.910 36.000 0.00 0.00 0.00 2.29
1955 2149 3.890936 GAAGCCCGCTGCACTCTGT 62.891 63.158 0.00 0.00 44.83 3.41
1956 2150 3.482232 AAGCCCGCTGCACTCTGTT 62.482 57.895 0.00 0.00 44.83 3.16
1957 2151 2.047274 GCCCGCTGCACTCTGTTA 60.047 61.111 0.00 0.00 40.77 2.41
1958 2152 2.391389 GCCCGCTGCACTCTGTTAC 61.391 63.158 0.00 0.00 40.77 2.50
1959 2153 1.005037 CCCGCTGCACTCTGTTACA 60.005 57.895 0.00 0.00 0.00 2.41
1960 2154 0.602638 CCCGCTGCACTCTGTTACAA 60.603 55.000 0.00 0.00 0.00 2.41
1961 2155 1.225855 CCGCTGCACTCTGTTACAAA 58.774 50.000 0.00 0.00 0.00 2.83
1962 2156 1.601903 CCGCTGCACTCTGTTACAAAA 59.398 47.619 0.00 0.00 0.00 2.44
1963 2157 2.349817 CCGCTGCACTCTGTTACAAAAG 60.350 50.000 0.00 0.00 0.00 2.27
1964 2158 2.543848 CGCTGCACTCTGTTACAAAAGA 59.456 45.455 0.00 0.00 0.00 2.52
1965 2159 3.002246 CGCTGCACTCTGTTACAAAAGAA 59.998 43.478 0.00 0.00 0.00 2.52
1966 2160 4.531332 GCTGCACTCTGTTACAAAAGAAG 58.469 43.478 0.00 0.00 0.00 2.85
1967 2161 4.531332 CTGCACTCTGTTACAAAAGAAGC 58.469 43.478 2.06 5.85 0.00 3.86
1968 2162 3.944650 TGCACTCTGTTACAAAAGAAGCA 59.055 39.130 11.67 11.67 33.61 3.91
1969 2163 4.201910 TGCACTCTGTTACAAAAGAAGCAC 60.202 41.667 11.67 0.00 32.07 4.40
1970 2164 4.035675 GCACTCTGTTACAAAAGAAGCACT 59.964 41.667 2.06 0.00 0.00 4.40
1971 2165 5.742446 CACTCTGTTACAAAAGAAGCACTC 58.258 41.667 2.06 0.00 0.00 3.51
1972 2166 5.525378 CACTCTGTTACAAAAGAAGCACTCT 59.475 40.000 2.06 0.00 35.13 3.24
1973 2167 5.525378 ACTCTGTTACAAAAGAAGCACTCTG 59.475 40.000 2.06 0.00 33.37 3.35
1974 2168 5.428253 TCTGTTACAAAAGAAGCACTCTGT 58.572 37.500 0.00 0.00 33.37 3.41
1975 2169 5.880332 TCTGTTACAAAAGAAGCACTCTGTT 59.120 36.000 0.00 0.00 33.37 3.16
1978 2172 6.596106 TGTTACAAAAGAAGCACTCTGTTACA 59.404 34.615 10.63 10.63 28.94 2.41
2012 2209 4.833478 AGCAGAAGAAGCTTCAAGGATA 57.167 40.909 27.57 0.00 39.87 2.59
2052 2249 5.416952 AGAATCATGAACAAACCTGATCCAC 59.583 40.000 0.00 0.00 0.00 4.02
2053 2250 4.371624 TCATGAACAAACCTGATCCACT 57.628 40.909 0.00 0.00 0.00 4.00
2063 2260 0.829333 CTGATCCACTGGACTGGAGG 59.171 60.000 0.00 0.00 43.82 4.30
2072 2269 2.829384 GGACTGGAGGCACCCAACA 61.829 63.158 0.00 0.00 35.47 3.33
2074 2271 2.282462 CTGGAGGCACCCAACACC 60.282 66.667 0.00 0.00 35.47 4.16
2080 2283 1.903404 GGCACCCAACACCTCCTTG 60.903 63.158 0.00 0.00 0.00 3.61
2086 2289 1.978580 CCCAACACCTCCTTGTCTACT 59.021 52.381 0.00 0.00 0.00 2.57
2088 2291 2.368875 CCAACACCTCCTTGTCTACTGT 59.631 50.000 0.00 0.00 0.00 3.55
2108 2311 0.983378 CGAAGAGGAACCCCATCCCT 60.983 60.000 0.00 0.00 40.59 4.20
2110 2313 1.641192 GAAGAGGAACCCCATCCCTTT 59.359 52.381 0.00 0.00 40.59 3.11
2130 2333 2.415825 CCTAGGATCGAAGGCGTCA 58.584 57.895 1.05 0.00 38.98 4.35
2134 2337 1.810030 GGATCGAAGGCGTCACACC 60.810 63.158 0.55 0.00 38.98 4.16
2135 2338 1.080093 GATCGAAGGCGTCACACCA 60.080 57.895 0.55 0.00 38.98 4.17
2141 2344 1.899437 AAGGCGTCACACCATCGGAT 61.899 55.000 0.00 0.00 0.00 4.18
2148 2351 2.098607 GTCACACCATCGGATCGTAGAA 59.901 50.000 0.00 0.00 43.58 2.10
2482 2685 2.499289 CTGAGTATTGAGGCACAGACCT 59.501 50.000 0.00 0.00 45.04 3.85
2484 2687 4.290093 TGAGTATTGAGGCACAGACCTAT 58.710 43.478 0.00 0.00 41.32 2.57
2485 2688 4.342378 TGAGTATTGAGGCACAGACCTATC 59.658 45.833 0.00 0.00 41.32 2.08
2488 2691 2.073252 TGAGGCACAGACCTATCGAT 57.927 50.000 2.16 2.16 41.32 3.59
2511 2719 0.908656 AGAGCTCAGGCATCCACAGT 60.909 55.000 17.77 0.00 41.70 3.55
2532 2740 4.954970 CCCCACGTTGCTGCCACT 62.955 66.667 2.24 0.00 0.00 4.00
2561 2769 2.447765 CCCTATCCCCTTCCGCCA 60.448 66.667 0.00 0.00 0.00 5.69
2581 2789 4.090057 GCTCGAAGGCGTTGCACC 62.090 66.667 0.00 0.00 37.73 5.01
2583 2791 4.595538 TCGAAGGCGTTGCACCGT 62.596 61.111 5.30 0.00 38.98 4.83
2585 2793 2.665185 GAAGGCGTTGCACCGTCT 60.665 61.111 4.40 4.40 46.30 4.18
2594 2802 2.357517 GCACCGTCTGGACACAGG 60.358 66.667 1.63 0.00 44.99 4.00
2616 2824 2.266055 CTCCTGGCCACCGAAGAC 59.734 66.667 0.00 0.00 0.00 3.01
2657 2865 0.181350 GGGACTTGCTGGACCTATGG 59.819 60.000 0.00 0.00 0.00 2.74
2674 2882 1.851304 TGGACCTCCATTGATTTGCC 58.149 50.000 0.00 0.00 42.01 4.52
2679 2887 1.656818 CTCCATTGATTTGCCGCCGT 61.657 55.000 0.00 0.00 0.00 5.68
2692 2900 2.372690 CGCCGTTCGGACTCAACAG 61.373 63.158 15.69 0.00 33.78 3.16
2700 2908 1.374758 GGACTCAACAGCCACCGAG 60.375 63.158 0.00 0.00 0.00 4.63
2701 2909 1.367840 GACTCAACAGCCACCGAGT 59.632 57.895 0.00 0.00 41.32 4.18
2724 2932 0.467290 AACCAACCGCATCACCACTT 60.467 50.000 0.00 0.00 0.00 3.16
2742 2950 4.160626 CCACTTACCCAAAGAACCAAAACA 59.839 41.667 0.00 0.00 38.67 2.83
2744 2952 5.752955 CACTTACCCAAAGAACCAAAACATG 59.247 40.000 0.00 0.00 38.67 3.21
2747 2955 2.134346 CCAAAGAACCAAAACATGCCG 58.866 47.619 0.00 0.00 0.00 5.69
2764 2972 2.710902 CGAGACGGTGCCTCCATGA 61.711 63.158 0.00 0.00 35.57 3.07
2783 2991 0.108585 AAGGTCACGATGCACAAGGT 59.891 50.000 0.00 0.00 0.00 3.50
2784 2992 0.603707 AGGTCACGATGCACAAGGTG 60.604 55.000 0.00 0.00 36.51 4.00
2822 3033 1.070134 GAGGTGGGTTTTTGGGCTTTC 59.930 52.381 0.00 0.00 0.00 2.62
2823 3034 0.833949 GGTGGGTTTTTGGGCTTTCA 59.166 50.000 0.00 0.00 0.00 2.69
2867 3078 2.047179 AAAAGAGACCTCGGCGGC 60.047 61.111 7.21 0.00 35.61 6.53
2902 3113 0.890542 GGTGGCTCACTTGTGCATCA 60.891 55.000 5.70 0.00 36.36 3.07
2934 3145 2.747686 GGAGCAACCGACCAAGGA 59.252 61.111 0.00 0.00 34.73 3.36
2938 3149 2.617021 GGAGCAACCGACCAAGGATTTA 60.617 50.000 0.00 0.00 34.73 1.40
2944 3155 1.408266 CCGACCAAGGATTTACCCCTG 60.408 57.143 0.00 0.00 40.05 4.45
2987 3198 2.131709 CCCGCCTTCTCCGTATCCA 61.132 63.158 0.00 0.00 0.00 3.41
3029 3240 4.733725 AAGCCGGCAGGGGGAGTA 62.734 66.667 31.54 0.00 38.20 2.59
3031 3242 3.723922 GCCGGCAGGGGGAGTAAA 61.724 66.667 24.80 0.00 38.20 2.01
3058 3269 1.573108 GGAGATGACCCTGACCTTCA 58.427 55.000 0.00 0.00 0.00 3.02
3090 3301 3.490933 CGATAGAGAGAAAATCCGTGCCA 60.491 47.826 0.00 0.00 39.76 4.92
3094 3305 1.066143 AGAGAAAATCCGTGCCACGAT 60.066 47.619 20.57 7.57 46.05 3.73
3095 3306 1.737793 GAGAAAATCCGTGCCACGATT 59.262 47.619 20.57 13.21 46.05 3.34
3100 3311 2.503920 ATCCGTGCCACGATTACTAC 57.496 50.000 20.57 0.00 46.05 2.73
3113 3324 3.248125 CGATTACTACCTGTCGACTCCTC 59.752 52.174 17.92 0.43 36.25 3.71
3114 3325 3.708403 TTACTACCTGTCGACTCCTCA 57.292 47.619 17.92 0.00 0.00 3.86
3134 3345 2.221906 CTGCCCATGCACAAGGAAGC 62.222 60.000 2.73 0.34 44.23 3.86
3135 3346 3.010413 GCCCATGCACAAGGAAGCC 62.010 63.158 2.73 0.00 37.47 4.35
3140 3351 2.046314 GCACAAGGAAGCCGGCTA 60.046 61.111 33.07 0.00 0.00 3.93
3145 3356 2.294078 AAGGAAGCCGGCTAGCACT 61.294 57.895 33.07 21.75 34.23 4.40
3148 3359 1.815840 GAAGCCGGCTAGCACTTCC 60.816 63.158 33.07 7.77 33.90 3.46
3149 3360 2.521958 GAAGCCGGCTAGCACTTCCA 62.522 60.000 33.07 0.00 33.90 3.53
3151 3362 2.662596 CCGGCTAGCACTTCCACA 59.337 61.111 18.24 0.00 0.00 4.17
3153 3364 2.094659 CGGCTAGCACTTCCACACG 61.095 63.158 18.24 3.31 0.00 4.49
3154 3365 2.391389 GGCTAGCACTTCCACACGC 61.391 63.158 18.24 0.00 0.00 5.34
3156 3367 2.048597 TAGCACTTCCACACGCCG 60.049 61.111 0.00 0.00 0.00 6.46
3159 3370 4.988598 CACTTCCACACGCCGCCT 62.989 66.667 0.00 0.00 0.00 5.52
3160 3371 4.988598 ACTTCCACACGCCGCCTG 62.989 66.667 0.00 0.00 0.00 4.85
3161 3372 4.988598 CTTCCACACGCCGCCTGT 62.989 66.667 0.00 0.00 0.00 4.00
3162 3373 4.980805 TTCCACACGCCGCCTGTC 62.981 66.667 0.00 0.00 0.00 3.51
3188 3399 2.124151 AATGCCACCTCGCCATCC 60.124 61.111 0.00 0.00 0.00 3.51
3189 3400 4.552365 ATGCCACCTCGCCATCCG 62.552 66.667 0.00 0.00 38.61 4.18
3215 3426 3.175710 ACCCCGGCAACCAGAGTT 61.176 61.111 0.00 0.00 36.33 3.01
3236 3447 2.485426 TCTTTGCGAAGGAATGAAGCAG 59.515 45.455 13.87 0.00 38.86 4.24
3270 3481 1.375396 CACCTTCATCGGCGTCCAA 60.375 57.895 6.85 0.00 0.00 3.53
3294 3505 1.978617 CTTGCCCGGCATTCACCTT 60.979 57.895 14.30 0.00 38.76 3.50
3324 3535 1.541168 AAGGGAGGGAGAGGGTGGAT 61.541 60.000 0.00 0.00 0.00 3.41
3329 3540 2.042930 GGAGAGGGTGGATGGGGT 59.957 66.667 0.00 0.00 0.00 4.95
3331 3542 2.286425 AGAGGGTGGATGGGGTGG 60.286 66.667 0.00 0.00 0.00 4.61
3362 3573 0.620700 AAACCCTAGTCGCCCCTGAT 60.621 55.000 0.00 0.00 0.00 2.90
3365 3576 1.364171 CCTAGTCGCCCCTGATTCG 59.636 63.158 0.00 0.00 0.00 3.34
3403 3615 3.782443 GGTCCCGGAAGCGTCCAT 61.782 66.667 19.13 0.00 45.26 3.41
3423 3635 4.489810 CATGAGGTCACAACAGAGTACTC 58.510 47.826 15.41 15.41 0.00 2.59
3470 3688 3.442996 CTGCAAGTTACTCCCTCCG 57.557 57.895 0.00 0.00 0.00 4.63
3471 3689 0.608640 CTGCAAGTTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
3472 3690 1.002087 CTGCAAGTTACTCCCTCCGTT 59.998 52.381 0.00 0.00 0.00 4.44
3473 3691 1.001633 TGCAAGTTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
3474 3692 1.675116 GCAAGTTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
3475 3693 1.900486 CAAGTTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
3476 3694 3.094572 CAAGTTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
3477 3695 3.463048 AGTTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3478 3696 3.782992 AGTTACTCCCTCCGTTCCTAAA 58.217 45.455 0.00 0.00 0.00 1.85
3479 3697 4.359996 AGTTACTCCCTCCGTTCCTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
3482 3700 7.300658 AGTTACTCCCTCCGTTCCTAAATATA 58.699 38.462 0.00 0.00 0.00 0.86
3484 3702 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3486 3704 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3489 3707 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3490 3708 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3522 3740 6.817184 TCCAATAAGGAACTACATACAGAGC 58.183 40.000 0.00 0.00 45.65 4.09
3523 3741 6.382859 TCCAATAAGGAACTACATACAGAGCA 59.617 38.462 0.00 0.00 45.65 4.26
3524 3742 7.047891 CCAATAAGGAACTACATACAGAGCAA 58.952 38.462 0.00 0.00 38.49 3.91
3525 3743 7.552687 CCAATAAGGAACTACATACAGAGCAAA 59.447 37.037 0.00 0.00 38.49 3.68
3526 3744 8.946085 CAATAAGGAACTACATACAGAGCAAAA 58.054 33.333 0.00 0.00 38.49 2.44
3527 3745 9.686683 AATAAGGAACTACATACAGAGCAAAAT 57.313 29.630 0.00 0.00 38.49 1.82
3528 3746 6.992063 AGGAACTACATACAGAGCAAAATG 57.008 37.500 0.00 0.00 36.02 2.32
3529 3747 6.711277 AGGAACTACATACAGAGCAAAATGA 58.289 36.000 0.00 0.00 36.02 2.57
3530 3748 7.168219 AGGAACTACATACAGAGCAAAATGAA 58.832 34.615 0.00 0.00 36.02 2.57
3531 3749 7.831193 AGGAACTACATACAGAGCAAAATGAAT 59.169 33.333 0.00 0.00 36.02 2.57
3532 3750 7.912250 GGAACTACATACAGAGCAAAATGAATG 59.088 37.037 0.00 0.00 0.00 2.67
3533 3751 8.565896 AACTACATACAGAGCAAAATGAATGA 57.434 30.769 0.00 0.00 0.00 2.57
3534 3752 8.565896 ACTACATACAGAGCAAAATGAATGAA 57.434 30.769 0.00 0.00 0.00 2.57
3535 3753 9.182214 ACTACATACAGAGCAAAATGAATGAAT 57.818 29.630 0.00 0.00 0.00 2.57
3536 3754 9.661187 CTACATACAGAGCAAAATGAATGAATC 57.339 33.333 0.00 0.00 0.00 2.52
3537 3755 8.289939 ACATACAGAGCAAAATGAATGAATCT 57.710 30.769 0.00 0.00 0.00 2.40
3538 3756 9.399797 ACATACAGAGCAAAATGAATGAATCTA 57.600 29.630 0.00 0.00 0.00 1.98
3539 3757 9.661187 CATACAGAGCAAAATGAATGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
3540 3758 7.692460 ACAGAGCAAAATGAATGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
3541 3759 7.533426 ACAGAGCAAAATGAATGAATCTACAC 58.467 34.615 0.00 0.00 0.00 2.90
3542 3760 7.392673 ACAGAGCAAAATGAATGAATCTACACT 59.607 33.333 0.00 0.00 0.00 3.55
3543 3761 7.909121 CAGAGCAAAATGAATGAATCTACACTC 59.091 37.037 0.00 0.00 0.00 3.51
3544 3762 7.828223 AGAGCAAAATGAATGAATCTACACTCT 59.172 33.333 0.00 0.00 0.00 3.24
3545 3763 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
3546 3764 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
3571 3789 9.565090 AAAATATGTCTACATACATCTGCATGT 57.435 29.630 4.98 0.00 45.73 3.21
3573 3791 9.645059 AATATGTCTACATACATCTGCATGTAC 57.355 33.333 4.98 0.00 46.23 2.90
3574 3792 6.715347 TGTCTACATACATCTGCATGTACT 57.285 37.500 2.32 0.00 46.23 2.73
3575 3793 6.739112 TGTCTACATACATCTGCATGTACTC 58.261 40.000 2.32 0.00 46.23 2.59
3576 3794 6.153067 GTCTACATACATCTGCATGTACTCC 58.847 44.000 2.32 0.00 46.23 3.85
3577 3795 4.342862 ACATACATCTGCATGTACTCCC 57.657 45.455 2.32 0.00 46.23 4.30
3578 3796 3.969976 ACATACATCTGCATGTACTCCCT 59.030 43.478 2.32 0.00 46.23 4.20
3579 3797 4.039730 ACATACATCTGCATGTACTCCCTC 59.960 45.833 2.32 0.00 46.23 4.30
3580 3798 2.756907 ACATCTGCATGTACTCCCTCT 58.243 47.619 0.00 0.00 41.81 3.69
3581 3799 2.433604 ACATCTGCATGTACTCCCTCTG 59.566 50.000 0.00 0.00 41.81 3.35
3582 3800 2.238084 TCTGCATGTACTCCCTCTGT 57.762 50.000 0.00 0.00 0.00 3.41
3583 3801 3.382083 TCTGCATGTACTCCCTCTGTA 57.618 47.619 0.00 0.00 0.00 2.74
3584 3802 3.708451 TCTGCATGTACTCCCTCTGTAA 58.292 45.455 0.00 0.00 0.00 2.41
3585 3803 4.093743 TCTGCATGTACTCCCTCTGTAAA 58.906 43.478 0.00 0.00 0.00 2.01
3586 3804 4.081642 TCTGCATGTACTCCCTCTGTAAAC 60.082 45.833 0.00 0.00 0.00 2.01
3587 3805 3.838317 TGCATGTACTCCCTCTGTAAACT 59.162 43.478 0.00 0.00 0.00 2.66
3588 3806 5.020795 TGCATGTACTCCCTCTGTAAACTA 58.979 41.667 0.00 0.00 0.00 2.24
3589 3807 5.482526 TGCATGTACTCCCTCTGTAAACTAA 59.517 40.000 0.00 0.00 0.00 2.24
3590 3808 6.156256 TGCATGTACTCCCTCTGTAAACTAAT 59.844 38.462 0.00 0.00 0.00 1.73
3591 3809 7.343574 TGCATGTACTCCCTCTGTAAACTAATA 59.656 37.037 0.00 0.00 0.00 0.98
3592 3810 8.368668 GCATGTACTCCCTCTGTAAACTAATAT 58.631 37.037 0.00 0.00 0.00 1.28
3598 3816 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3599 3817 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
3600 3818 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
3647 3865 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3648 3866 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3649 3867 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3650 3868 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3651 3869 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3652 3870 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3653 3871 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3654 3872 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3655 3873 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3656 3874 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
3657 3875 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
3658 3876 7.757941 ATATTAGTTTACGGAGGGAGTAGTC 57.242 40.000 0.00 0.00 0.00 2.59
3659 3877 2.732763 AGTTTACGGAGGGAGTAGTCC 58.267 52.381 8.22 8.22 43.05 3.85
3660 3878 2.042162 AGTTTACGGAGGGAGTAGTCCA 59.958 50.000 18.49 0.00 46.07 4.02
3661 3879 3.029570 GTTTACGGAGGGAGTAGTCCAT 58.970 50.000 18.49 11.60 46.07 3.41
3662 3880 4.079558 AGTTTACGGAGGGAGTAGTCCATA 60.080 45.833 18.49 0.00 46.07 2.74
3663 3881 2.660670 ACGGAGGGAGTAGTCCATAG 57.339 55.000 18.49 11.11 46.07 2.23
3664 3882 1.851653 ACGGAGGGAGTAGTCCATAGT 59.148 52.381 18.49 11.73 46.07 2.12
3665 3883 2.231529 CGGAGGGAGTAGTCCATAGTG 58.768 57.143 18.49 1.05 46.07 2.74
3666 3884 2.158652 CGGAGGGAGTAGTCCATAGTGA 60.159 54.545 18.49 0.00 46.07 3.41
3667 3885 3.687551 CGGAGGGAGTAGTCCATAGTGAA 60.688 52.174 18.49 0.00 46.07 3.18
3668 3886 4.287552 GGAGGGAGTAGTCCATAGTGAAA 58.712 47.826 18.49 0.00 46.07 2.69
3669 3887 4.902448 GGAGGGAGTAGTCCATAGTGAAAT 59.098 45.833 18.49 0.00 46.07 2.17
3670 3888 5.011227 GGAGGGAGTAGTCCATAGTGAAATC 59.989 48.000 18.49 0.00 46.07 2.17
3671 3889 5.782925 AGGGAGTAGTCCATAGTGAAATCT 58.217 41.667 18.49 0.00 46.07 2.40
3672 3890 5.836358 AGGGAGTAGTCCATAGTGAAATCTC 59.164 44.000 18.49 0.00 46.07 2.75
3673 3891 5.836358 GGGAGTAGTCCATAGTGAAATCTCT 59.164 44.000 18.49 0.00 46.07 3.10
3674 3892 7.005296 GGGAGTAGTCCATAGTGAAATCTCTA 58.995 42.308 18.49 0.00 46.07 2.43
3675 3893 7.506261 GGGAGTAGTCCATAGTGAAATCTCTAA 59.494 40.741 18.49 0.00 46.07 2.10
3676 3894 8.915036 GGAGTAGTCCATAGTGAAATCTCTAAA 58.085 37.037 12.02 0.00 43.31 1.85
3681 3899 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
3682 3900 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
3700 3918 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3701 3919 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3716 3934 3.094572 CGGAGGGAGTACTTACCAAGAA 58.905 50.000 16.93 0.00 0.00 2.52
3781 4001 9.439500 AAGGCGTATAAGTTGTCATAAGTAAAA 57.561 29.630 0.00 0.00 0.00 1.52
3806 4026 6.095021 AGTTTTCTGAGTTTGACCAGGTTTAC 59.905 38.462 0.00 0.00 0.00 2.01
3903 4123 8.978874 ATGTTGATTTGCTATTGTAGGTATCA 57.021 30.769 0.00 0.00 0.00 2.15
4007 4268 8.126385 AGAGGGTTATATGTTAATTTGGGGTTT 58.874 33.333 0.00 0.00 0.00 3.27
4037 4298 9.901172 TTGTATCTAGACTCAGTTACTGATACA 57.099 33.333 15.91 15.22 39.92 2.29
4038 4299 9.901172 TGTATCTAGACTCAGTTACTGATACAA 57.099 33.333 15.91 1.99 40.72 2.41
4056 4317 6.434340 TGATACAACTCAACTCTAGAGAAGCA 59.566 38.462 26.57 9.17 36.91 3.91
4091 4352 6.831769 TCTGTTTTAGAAATCATCGTCTTGC 58.168 36.000 0.00 0.00 30.84 4.01
4109 4370 6.183360 CGTCTTGCTGCATACTTTAATCAGAA 60.183 38.462 1.84 0.00 0.00 3.02
4125 4386 3.325870 TCAGAATTAACTGACTGTGGCG 58.674 45.455 0.00 0.00 41.21 5.69
4141 4402 1.284297 GGCGTGGCAATTTTCACTGC 61.284 55.000 0.00 12.08 37.86 4.40
4150 4411 4.082026 GGCAATTTTCACTGCAGGAATACT 60.082 41.667 19.93 1.44 40.46 2.12
4182 4443 7.036996 TGCTGATGTCTTTTGTATTGTGAAA 57.963 32.000 0.00 0.00 0.00 2.69
4186 4447 7.424803 TGATGTCTTTTGTATTGTGAAACCAG 58.575 34.615 0.00 0.00 34.36 4.00
4252 4514 7.750903 GCACTTCATTTTACAATCCTACAAGTC 59.249 37.037 0.00 0.00 0.00 3.01
4298 4560 6.311445 CAGTTTGGCACTATAGTACTGTTCTG 59.689 42.308 18.60 13.48 32.76 3.02
4340 4602 4.195225 AGAGCTTAACTTCCTTTCTCCG 57.805 45.455 0.00 0.00 0.00 4.63
4342 4604 4.040584 AGAGCTTAACTTCCTTTCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
4343 4605 4.715713 AGCTTAACTTCCTTTCTCCGTTT 58.284 39.130 0.00 0.00 0.00 3.60
4345 4607 6.293698 AGCTTAACTTCCTTTCTCCGTTTTA 58.706 36.000 0.00 0.00 0.00 1.52
4346 4608 6.427242 AGCTTAACTTCCTTTCTCCGTTTTAG 59.573 38.462 0.00 0.00 0.00 1.85
4347 4609 6.348295 GCTTAACTTCCTTTCTCCGTTTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
4430 4743 5.677319 TTCCTAAGGAATCCACTACACTG 57.323 43.478 0.61 0.00 36.71 3.66
4463 4776 7.881775 AGGAAATATTTACATCCACTCCAAC 57.118 36.000 12.97 0.00 34.30 3.77
4474 4787 4.715534 TCCACTCCAACCTCATGTAAAA 57.284 40.909 0.00 0.00 0.00 1.52
4519 4834 3.446873 ACAATCAAAGACACTTTGGTGCA 59.553 39.130 19.43 5.46 46.57 4.57
4522 4837 3.554934 TCAAAGACACTTTGGTGCAGAT 58.445 40.909 19.43 0.00 46.57 2.90
4527 4842 6.655078 AAGACACTTTGGTGCAGATAAAAT 57.345 33.333 0.00 0.00 46.57 1.82
4634 5011 8.308207 AGTAGGAAAAGTTCTCTGAGATAACAC 58.692 37.037 8.42 3.69 0.00 3.32
4981 5361 0.323999 TCATTGCTGCATGGCTTCCT 60.324 50.000 1.84 0.00 0.00 3.36
4991 5371 4.454678 TGCATGGCTTCCTAATACTTGAG 58.545 43.478 0.00 0.00 0.00 3.02
4993 5373 4.712476 CATGGCTTCCTAATACTTGAGCT 58.288 43.478 0.00 0.00 0.00 4.09
4994 5374 4.408182 TGGCTTCCTAATACTTGAGCTC 57.592 45.455 6.82 6.82 0.00 4.09
5021 5401 6.604396 TCAGATGTACCTTTGCATTGATCATT 59.396 34.615 0.00 0.00 0.00 2.57
5036 5416 7.520686 CATTGATCATTGCTACATTGCGTATA 58.479 34.615 4.75 0.00 35.36 1.47
5037 5417 6.466308 TGATCATTGCTACATTGCGTATAC 57.534 37.500 0.00 0.00 35.36 1.47
5041 5421 6.156519 TCATTGCTACATTGCGTATACTAGG 58.843 40.000 0.56 0.00 35.36 3.02
5087 5467 1.355210 CCACACCGAGTTGTTGCAC 59.645 57.895 0.00 0.00 0.00 4.57
5099 5479 0.459489 TGTTGCACTTGCTCCCAAAC 59.541 50.000 2.33 0.00 42.66 2.93
5105 5485 2.023673 CACTTGCTCCCAAACACTGAA 58.976 47.619 0.00 0.00 0.00 3.02
5112 5492 3.634910 GCTCCCAAACACTGAACCTTTTA 59.365 43.478 0.00 0.00 0.00 1.52
5113 5493 4.261614 GCTCCCAAACACTGAACCTTTTAG 60.262 45.833 0.00 0.00 0.00 1.85
5114 5494 5.118729 TCCCAAACACTGAACCTTTTAGA 57.881 39.130 0.00 0.00 0.00 2.10
5115 5495 5.701224 TCCCAAACACTGAACCTTTTAGAT 58.299 37.500 0.00 0.00 0.00 1.98
5122 5507 5.827797 ACACTGAACCTTTTAGATCTTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
5125 5510 6.128172 ACTGAACCTTTTAGATCTTTGCATCG 60.128 38.462 0.00 0.00 0.00 3.84
5196 5581 1.148310 CAGGCACGAACTTCACGAAT 58.852 50.000 0.00 0.00 34.70 3.34
5400 5813 0.182061 GATTGGAGCTGGGATGCAGA 59.818 55.000 0.00 0.00 34.99 4.26
5499 5912 1.589716 GCACCAGCAGGATGACAACC 61.590 60.000 0.35 0.00 39.69 3.77
5500 5913 0.962356 CACCAGCAGGATGACAACCC 60.962 60.000 0.35 0.00 39.69 4.11
5502 5915 1.379044 CAGCAGGATGACAACCCCC 60.379 63.158 0.00 0.00 39.69 5.40
5534 6271 7.716998 CCCTCTGAAAATATGTATGTACAAGCT 59.283 37.037 0.00 0.00 39.99 3.74
5599 6344 4.566360 GTGCAAACACAACTTACAGCAAAT 59.434 37.500 0.00 0.00 46.61 2.32
5603 6348 6.183360 GCAAACACAACTTACAGCAAATGAAA 60.183 34.615 0.00 0.00 0.00 2.69
5829 6574 1.066605 CACGCGCACCCTAGTATAACT 59.933 52.381 5.73 0.00 0.00 2.24
5853 6598 1.524621 CCTACAAGGGCCGATGCTG 60.525 63.158 11.63 5.54 37.74 4.41
6004 6749 1.375853 CCGGCGATTGGCTTCATTCA 61.376 55.000 9.30 0.00 42.94 2.57
6012 6757 2.254546 TGGCTTCATTCAGTGTCGTT 57.745 45.000 0.00 0.00 0.00 3.85
6021 6766 1.732941 TCAGTGTCGTTGTTGTTGCT 58.267 45.000 0.00 0.00 0.00 3.91
6120 6865 4.933064 CTCCTCGTCGATGGCGCC 62.933 72.222 22.73 22.73 37.46 6.53
6172 6917 2.747855 CGGGCTTGCCAGAGGAAC 60.748 66.667 14.04 0.00 0.00 3.62
6310 7055 6.591062 ACCATGACACGTACGTACAAATTAAT 59.409 34.615 22.34 8.42 0.00 1.40
6323 7068 6.688385 CGTACAAATTAATCAGGTGCATCTTG 59.312 38.462 0.00 0.00 0.00 3.02
6418 7165 1.519455 GAGCTGCGCGTAGTTGGAT 60.519 57.895 25.02 6.87 0.00 3.41
6610 7360 1.077501 CATCCCCACCAGCATCGTT 60.078 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.536233 TGCTTGCGGGTTGAAGCTTA 60.536 50.000 0.00 0.00 44.15 3.09
57 58 4.546081 CGATTGCAACTTTTTCGTTGTGTG 60.546 41.667 0.00 0.00 44.61 3.82
119 120 0.685097 AGCTTTCTGTCGCCAGGTTA 59.315 50.000 0.00 0.00 39.31 2.85
124 125 1.618837 AGTTCTAGCTTTCTGTCGCCA 59.381 47.619 0.00 0.00 0.00 5.69
132 133 2.289694 TGAGGTGCCAGTTCTAGCTTTC 60.290 50.000 0.00 0.00 0.00 2.62
154 156 2.080693 GTGCCACCATTACATCAACGA 58.919 47.619 0.00 0.00 0.00 3.85
163 165 0.981183 ACGAAGGAGTGCCACCATTA 59.019 50.000 0.00 0.00 36.29 1.90
169 171 2.599281 TCCGACGAAGGAGTGCCA 60.599 61.111 0.00 0.00 34.92 4.92
257 261 1.272769 GGAGTAGCAAGACGTGGAACT 59.727 52.381 0.00 0.00 31.75 3.01
260 264 1.592400 CGGGAGTAGCAAGACGTGGA 61.592 60.000 0.00 0.00 0.00 4.02
319 323 5.084818 ACCATTTATGTCGACAGTCATCA 57.915 39.130 24.41 4.85 0.00 3.07
320 324 5.351465 ACAACCATTTATGTCGACAGTCATC 59.649 40.000 24.41 0.00 0.00 2.92
321 325 5.245531 ACAACCATTTATGTCGACAGTCAT 58.754 37.500 24.41 11.86 0.00 3.06
335 339 4.007659 GACAGGAATCGGTACAACCATTT 58.992 43.478 0.00 0.00 38.47 2.32
359 363 2.481185 GGTTCATTTTTGCTACGACCGA 59.519 45.455 0.00 0.00 0.00 4.69
503 507 0.321671 GGTGGTAGCTCTCAGCAACA 59.678 55.000 11.87 0.00 45.56 3.33
532 536 2.643551 CGCCTTGACCCATGAAATAGT 58.356 47.619 0.00 0.00 0.00 2.12
670 675 3.074369 TTCGCGCATCCTCTCCCA 61.074 61.111 8.75 0.00 0.00 4.37
686 691 1.573108 ATCACATCTCCCACTCGGTT 58.427 50.000 0.00 0.00 0.00 4.44
707 712 3.732721 CAGCTTTTTCTTCTTTTCGCTGG 59.267 43.478 0.00 0.00 39.76 4.85
714 720 1.341209 CCCCGCAGCTTTTTCTTCTTT 59.659 47.619 0.00 0.00 0.00 2.52
723 729 2.521708 AGTTTGCCCCGCAGCTTT 60.522 55.556 0.00 0.00 40.61 3.51
758 765 0.323269 TGGATTTGAGCCGCCATTGA 60.323 50.000 0.00 0.00 0.00 2.57
817 830 1.883084 GGCACTAATCTGCGTCGGG 60.883 63.158 0.00 0.00 38.12 5.14
821 834 1.279271 AGAAAGGGCACTAATCTGCGT 59.721 47.619 3.51 0.00 38.12 5.24
947 960 2.061061 GGAGATGGAAGGGATCATGGT 58.939 52.381 0.00 0.00 0.00 3.55
949 962 1.353694 GGGGAGATGGAAGGGATCATG 59.646 57.143 0.00 0.00 0.00 3.07
1284 1300 1.456705 GAAACCACCAACCTGGCCA 60.457 57.895 4.71 4.71 42.67 5.36
1362 1378 7.010160 TGGGTTCTACAAATTTCCTCTCAATT 58.990 34.615 0.00 0.00 0.00 2.32
1398 1414 4.551388 GTGAGTCTATTTATGCTAGCGCT 58.449 43.478 17.26 17.26 36.97 5.92
1399 1415 3.362237 CGTGAGTCTATTTATGCTAGCGC 59.638 47.826 10.77 0.00 0.00 5.92
1429 1445 2.309755 TCCTCATCTGCCACCAAATCTT 59.690 45.455 0.00 0.00 0.00 2.40
1430 1446 1.918262 TCCTCATCTGCCACCAAATCT 59.082 47.619 0.00 0.00 0.00 2.40
1446 1467 0.603569 TTGCGACTTCTCCTGTCCTC 59.396 55.000 0.00 0.00 0.00 3.71
1450 1471 4.894784 TCTAAAATTGCGACTTCTCCTGT 58.105 39.130 0.00 0.00 0.00 4.00
1451 1472 5.220739 CCATCTAAAATTGCGACTTCTCCTG 60.221 44.000 0.00 0.00 0.00 3.86
1452 1473 4.878397 CCATCTAAAATTGCGACTTCTCCT 59.122 41.667 0.00 0.00 0.00 3.69
1453 1474 4.876107 TCCATCTAAAATTGCGACTTCTCC 59.124 41.667 0.00 0.00 0.00 3.71
1454 1475 6.422776 TTCCATCTAAAATTGCGACTTCTC 57.577 37.500 0.00 0.00 0.00 2.87
1455 1476 7.396540 AATTCCATCTAAAATTGCGACTTCT 57.603 32.000 0.00 0.00 0.00 2.85
1464 1485 7.813087 AGGGACCAAAATTCCATCTAAAATT 57.187 32.000 0.00 0.00 34.45 1.82
1513 1534 7.120138 CCCAATATCAAATTTGAGCAAAAGCTT 59.880 33.333 24.17 8.41 41.08 3.74
1519 1540 8.102047 ACATTTCCCAATATCAAATTTGAGCAA 58.898 29.630 24.17 13.55 41.08 3.91
1530 1551 7.621285 TGAAACCCAATACATTTCCCAATATCA 59.379 33.333 0.00 0.00 32.44 2.15
1535 1556 5.151454 AGTGAAACCCAATACATTTCCCAA 58.849 37.500 0.00 0.00 37.80 4.12
1562 1583 7.331934 GCTGGCTAGTATATTTGATCGAATCAA 59.668 37.037 11.62 0.00 46.77 2.57
1589 1611 9.816787 ACCCAGTATTTAGAAAGTAATTTTCCA 57.183 29.630 0.00 0.00 45.15 3.53
1635 1657 3.993081 CTCCAGCAGTTGTTCAAGAGTAG 59.007 47.826 0.00 0.00 0.00 2.57
1667 1689 7.962995 ACCTTCTTCAGACTATCACTATTCA 57.037 36.000 0.00 0.00 0.00 2.57
1693 1720 8.122472 ACCACTATTATTTTCTCCAAAACCAG 57.878 34.615 0.00 0.00 34.24 4.00
1762 1789 9.793259 TTCAATGTCTTCCTTCTAAAATACACT 57.207 29.630 0.00 0.00 0.00 3.55
1783 1860 6.201517 CGATTGATGGTTTCGCTAATTCAAT 58.798 36.000 0.00 0.00 35.63 2.57
1786 1863 4.527564 CCGATTGATGGTTTCGCTAATTC 58.472 43.478 0.00 0.00 0.00 2.17
1792 1869 1.297598 CGCCGATTGATGGTTTCGC 60.298 57.895 0.00 0.00 0.00 4.70
1797 1874 1.410850 ATCCCTCGCCGATTGATGGT 61.411 55.000 0.00 0.00 0.00 3.55
1805 1882 1.745890 CCATGTAATCCCTCGCCGA 59.254 57.895 0.00 0.00 0.00 5.54
1807 1884 1.148273 TGCCATGTAATCCCTCGCC 59.852 57.895 0.00 0.00 0.00 5.54
1810 1887 2.301346 CTTGGTGCCATGTAATCCCTC 58.699 52.381 0.00 0.00 0.00 4.30
1841 1918 3.118956 AGTCAGCTCCCTTGTATCTTTCG 60.119 47.826 0.00 0.00 0.00 3.46
1868 2060 1.087501 TGTGCGTTGTGTTGTAAGCA 58.912 45.000 0.00 0.00 0.00 3.91
1874 2066 2.350192 TCTTGTAGTGTGCGTTGTGTTG 59.650 45.455 0.00 0.00 0.00 3.33
1883 2075 4.875544 TCTTTGTGTTCTTGTAGTGTGC 57.124 40.909 0.00 0.00 0.00 4.57
1919 2113 3.511699 CTTCGACATTACTAGCAGTGCA 58.488 45.455 19.20 2.32 0.00 4.57
1955 2149 7.618502 TTGTAACAGAGTGCTTCTTTTGTAA 57.381 32.000 1.92 0.00 32.41 2.41
1956 2150 7.618502 TTTGTAACAGAGTGCTTCTTTTGTA 57.381 32.000 1.92 0.00 32.41 2.41
1957 2151 6.509418 TTTGTAACAGAGTGCTTCTTTTGT 57.491 33.333 1.92 0.17 32.41 2.83
1958 2152 7.250569 TCTTTTGTAACAGAGTGCTTCTTTTG 58.749 34.615 1.92 0.00 32.41 2.44
1959 2153 7.391148 TCTTTTGTAACAGAGTGCTTCTTTT 57.609 32.000 0.00 0.00 32.41 2.27
1960 2154 7.094377 TGTTCTTTTGTAACAGAGTGCTTCTTT 60.094 33.333 0.00 0.00 32.41 2.52
1961 2155 6.374333 TGTTCTTTTGTAACAGAGTGCTTCTT 59.626 34.615 0.00 0.00 32.41 2.52
1962 2156 5.880332 TGTTCTTTTGTAACAGAGTGCTTCT 59.120 36.000 0.00 0.00 36.25 2.85
1963 2157 6.119144 TGTTCTTTTGTAACAGAGTGCTTC 57.881 37.500 0.00 0.00 33.13 3.86
1972 2166 5.645929 TCTGCTTGTCTGTTCTTTTGTAACA 59.354 36.000 0.00 0.00 35.61 2.41
1973 2167 6.119144 TCTGCTTGTCTGTTCTTTTGTAAC 57.881 37.500 0.00 0.00 0.00 2.50
1974 2168 6.597672 TCTTCTGCTTGTCTGTTCTTTTGTAA 59.402 34.615 0.00 0.00 0.00 2.41
1975 2169 6.112734 TCTTCTGCTTGTCTGTTCTTTTGTA 58.887 36.000 0.00 0.00 0.00 2.41
1978 2172 5.449725 GCTTCTTCTGCTTGTCTGTTCTTTT 60.450 40.000 0.00 0.00 0.00 2.27
2012 2209 9.857656 TTCATGATTCTTTCAGATTATAGGCTT 57.142 29.630 0.00 0.00 37.89 4.35
2019 2216 9.300681 AGGTTTGTTCATGATTCTTTCAGATTA 57.699 29.630 0.00 0.00 37.89 1.75
2021 2218 7.449395 TCAGGTTTGTTCATGATTCTTTCAGAT 59.551 33.333 0.00 0.00 37.89 2.90
2034 2231 3.074390 TCCAGTGGATCAGGTTTGTTCAT 59.926 43.478 8.12 0.00 0.00 2.57
2036 2233 2.814336 GTCCAGTGGATCAGGTTTGTTC 59.186 50.000 16.67 0.00 32.73 3.18
2042 2239 0.117140 TCCAGTCCAGTGGATCAGGT 59.883 55.000 16.67 0.00 41.99 4.00
2052 2249 2.528818 TTGGGTGCCTCCAGTCCAG 61.529 63.158 0.00 0.00 38.17 3.86
2053 2250 2.449518 TTGGGTGCCTCCAGTCCA 60.450 61.111 0.00 0.00 38.17 4.02
2063 2260 1.152756 ACAAGGAGGTGTTGGGTGC 60.153 57.895 0.00 0.00 0.00 5.01
2072 2269 2.581216 TCGACAGTAGACAAGGAGGT 57.419 50.000 0.00 0.00 0.00 3.85
2074 2271 3.127895 CCTCTTCGACAGTAGACAAGGAG 59.872 52.174 5.11 1.83 0.00 3.69
2080 2283 2.164017 GGGTTCCTCTTCGACAGTAGAC 59.836 54.545 0.00 0.00 0.00 2.59
2086 2289 0.902531 GATGGGGTTCCTCTTCGACA 59.097 55.000 0.00 0.00 0.00 4.35
2088 2291 0.981277 GGGATGGGGTTCCTCTTCGA 60.981 60.000 0.00 0.00 35.97 3.71
2130 2333 1.067212 GCTTCTACGATCCGATGGTGT 59.933 52.381 6.31 0.00 0.00 4.16
2134 2337 0.039978 AGCGCTTCTACGATCCGATG 60.040 55.000 2.64 0.00 34.06 3.84
2135 2338 0.238817 GAGCGCTTCTACGATCCGAT 59.761 55.000 13.26 0.00 42.37 4.18
2412 2615 1.079750 AGCTTCCTTCTTCGGCGAC 60.080 57.895 10.16 0.00 0.00 5.19
2482 2685 0.877743 CCTGAGCTCTGCGATCGATA 59.122 55.000 21.57 5.76 0.00 2.92
2484 2687 3.114650 CCTGAGCTCTGCGATCGA 58.885 61.111 21.57 3.01 0.00 3.59
2485 2688 2.657944 GCCTGAGCTCTGCGATCG 60.658 66.667 16.19 11.69 35.50 3.69
2488 2691 2.498248 GATGCCTGAGCTCTGCGA 59.502 61.111 16.19 8.88 40.80 5.10
2515 2723 4.954970 AGTGGCAGCAACGTGGGG 62.955 66.667 0.00 0.00 0.00 4.96
2516 2724 3.663176 CAGTGGCAGCAACGTGGG 61.663 66.667 0.00 0.00 0.00 4.61
2561 2769 3.050275 GCAACGCCTTCGAGCCTT 61.050 61.111 0.00 0.00 39.41 4.35
2581 2789 1.956170 GTGTGCCTGTGTCCAGACG 60.956 63.158 0.00 0.00 41.50 4.18
2583 2791 1.748403 GAGTGTGCCTGTGTCCAGA 59.252 57.895 0.00 0.00 41.50 3.86
2585 2793 1.766059 AGGAGTGTGCCTGTGTCCA 60.766 57.895 0.00 0.00 36.76 4.02
2616 2824 2.446435 CACTTATCTTTGGGGTGGTGG 58.554 52.381 0.00 0.00 0.00 4.61
2657 2865 0.101219 GCGGCAAATCAATGGAGGTC 59.899 55.000 0.00 0.00 0.00 3.85
2674 2882 2.355363 TGTTGAGTCCGAACGGCG 60.355 61.111 4.80 4.80 40.47 6.46
2679 2887 1.070786 GGTGGCTGTTGAGTCCGAA 59.929 57.895 0.00 0.00 0.00 4.30
2700 2908 2.258286 GATGCGGTTGGTTGGCAC 59.742 61.111 0.00 0.00 39.84 5.01
2701 2909 2.203408 TGATGCGGTTGGTTGGCA 60.203 55.556 0.00 0.00 41.48 4.92
2724 2932 3.070302 GGCATGTTTTGGTTCTTTGGGTA 59.930 43.478 0.00 0.00 0.00 3.69
2747 2955 0.460987 CTTCATGGAGGCACCGTCTC 60.461 60.000 0.00 0.00 42.61 3.36
2764 2972 0.108585 ACCTTGTGCATCGTGACCTT 59.891 50.000 0.00 0.00 0.00 3.50
2799 3010 1.152631 CCCAAAAACCCACCTCGGT 60.153 57.895 0.00 0.00 37.93 4.69
2806 3017 0.833949 GGTGAAAGCCCAAAAACCCA 59.166 50.000 0.00 0.00 0.00 4.51
2822 3033 2.272146 CATCCCAGTTCCCGGGTG 59.728 66.667 22.86 11.95 44.81 4.61
2823 3034 3.015145 CCATCCCAGTTCCCGGGT 61.015 66.667 22.86 0.00 44.81 5.28
2867 3078 2.437359 CCTTCCTCCTTGCAGGCG 60.437 66.667 0.00 0.00 34.61 5.52
2872 3083 1.377856 GAGCCACCTTCCTCCTTGC 60.378 63.158 0.00 0.00 0.00 4.01
2875 3086 0.474660 AAGTGAGCCACCTTCCTCCT 60.475 55.000 2.18 0.00 34.49 3.69
2885 3096 0.109153 AGTGATGCACAAGTGAGCCA 59.891 50.000 4.04 0.00 36.74 4.75
2908 3119 4.424711 GGTTGCTCCGGCCATGGA 62.425 66.667 18.40 0.31 37.74 3.41
2934 3145 1.285078 GGCTTGAGACCAGGGGTAAAT 59.715 52.381 0.00 0.00 35.25 1.40
2938 3149 0.910088 GTAGGCTTGAGACCAGGGGT 60.910 60.000 0.00 0.00 39.44 4.95
2944 3155 1.071699 TGGTTGTGTAGGCTTGAGACC 59.928 52.381 0.00 0.00 0.00 3.85
3020 3231 1.274825 CCCCCTTAGTTTACTCCCCCT 60.275 57.143 0.00 0.00 0.00 4.79
3029 3240 2.206223 GGGTCATCTCCCCCTTAGTTT 58.794 52.381 0.00 0.00 41.54 2.66
3031 3242 3.656869 GGGTCATCTCCCCCTTAGT 57.343 57.895 0.00 0.00 41.54 2.24
3049 3260 1.202394 CGCTCCAGATCTGAAGGTCAG 60.202 57.143 24.62 10.10 45.59 3.51
3054 3265 4.071423 TCTCTATCGCTCCAGATCTGAAG 58.929 47.826 24.62 15.13 32.39 3.02
3058 3269 4.365514 TTCTCTCTATCGCTCCAGATCT 57.634 45.455 0.00 0.00 32.39 2.75
3060 3271 5.047377 GGATTTTCTCTCTATCGCTCCAGAT 60.047 44.000 0.00 0.00 34.79 2.90
3068 3279 3.053455 GGCACGGATTTTCTCTCTATCG 58.947 50.000 0.00 0.00 0.00 2.92
3090 3301 2.941720 GGAGTCGACAGGTAGTAATCGT 59.058 50.000 19.50 0.00 36.03 3.73
3094 3305 3.008813 AGTGAGGAGTCGACAGGTAGTAA 59.991 47.826 19.50 0.00 0.00 2.24
3095 3306 2.570752 AGTGAGGAGTCGACAGGTAGTA 59.429 50.000 19.50 0.00 0.00 1.82
3100 3311 1.214062 GCAGTGAGGAGTCGACAGG 59.786 63.158 19.50 0.00 0.00 4.00
3134 3345 1.741770 GTGTGGAAGTGCTAGCCGG 60.742 63.158 13.29 0.00 0.00 6.13
3135 3346 2.094659 CGTGTGGAAGTGCTAGCCG 61.095 63.158 13.29 0.65 0.00 5.52
3145 3356 4.980805 GACAGGCGGCGTGTGGAA 62.981 66.667 30.28 0.00 32.46 3.53
3157 3368 3.197790 CATTGCCTCCGCGACAGG 61.198 66.667 17.30 17.30 38.08 4.00
3158 3369 3.869272 GCATTGCCTCCGCGACAG 61.869 66.667 8.23 2.21 38.08 3.51
3201 3412 0.593128 CAAAGAACTCTGGTTGCCGG 59.407 55.000 0.00 0.00 35.58 6.13
3215 3426 2.485426 CTGCTTCATTCCTTCGCAAAGA 59.515 45.455 0.00 0.00 34.14 2.52
3236 3447 4.373116 TGGCGGTGAGGTTCTCGC 62.373 66.667 0.00 0.00 46.35 5.03
3294 3505 3.579302 CTCCCTTGCCACCACCCA 61.579 66.667 0.00 0.00 0.00 4.51
3388 3600 2.682136 TCATGGACGCTTCCGGGA 60.682 61.111 0.00 1.69 46.37 5.14
3392 3604 0.741221 GTGACCTCATGGACGCTTCC 60.741 60.000 1.37 1.37 43.19 3.46
3403 3615 2.891580 GGAGTACTCTGTTGTGACCTCA 59.108 50.000 21.88 0.00 0.00 3.86
3423 3635 5.064707 GCACATTACATACTGTGGTAAGTGG 59.935 44.000 20.93 13.45 42.37 4.00
3458 3676 4.750021 ATTTAGGAACGGAGGGAGTAAC 57.250 45.455 0.00 0.00 0.00 2.50
3461 3679 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3462 3680 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3464 3682 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3465 3683 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3498 3716 6.382859 TGCTCTGTATGTAGTTCCTTATTGGA 59.617 38.462 0.00 0.00 44.51 3.53
3499 3717 6.582636 TGCTCTGTATGTAGTTCCTTATTGG 58.417 40.000 0.00 0.00 37.10 3.16
3500 3718 8.492673 TTTGCTCTGTATGTAGTTCCTTATTG 57.507 34.615 0.00 0.00 0.00 1.90
3501 3719 9.686683 ATTTTGCTCTGTATGTAGTTCCTTATT 57.313 29.630 0.00 0.00 0.00 1.40
3502 3720 9.113838 CATTTTGCTCTGTATGTAGTTCCTTAT 57.886 33.333 0.00 0.00 0.00 1.73
3503 3721 8.318412 TCATTTTGCTCTGTATGTAGTTCCTTA 58.682 33.333 0.00 0.00 0.00 2.69
3504 3722 7.168219 TCATTTTGCTCTGTATGTAGTTCCTT 58.832 34.615 0.00 0.00 0.00 3.36
3505 3723 6.711277 TCATTTTGCTCTGTATGTAGTTCCT 58.289 36.000 0.00 0.00 0.00 3.36
3506 3724 6.985188 TCATTTTGCTCTGTATGTAGTTCC 57.015 37.500 0.00 0.00 0.00 3.62
3507 3725 8.668353 TCATTCATTTTGCTCTGTATGTAGTTC 58.332 33.333 0.00 0.00 0.00 3.01
3508 3726 8.565896 TCATTCATTTTGCTCTGTATGTAGTT 57.434 30.769 0.00 0.00 0.00 2.24
3509 3727 8.565896 TTCATTCATTTTGCTCTGTATGTAGT 57.434 30.769 0.00 0.00 0.00 2.73
3510 3728 9.661187 GATTCATTCATTTTGCTCTGTATGTAG 57.339 33.333 0.00 0.00 0.00 2.74
3511 3729 9.399797 AGATTCATTCATTTTGCTCTGTATGTA 57.600 29.630 0.00 0.00 0.00 2.29
3512 3730 8.289939 AGATTCATTCATTTTGCTCTGTATGT 57.710 30.769 0.00 0.00 0.00 2.29
3513 3731 9.661187 GTAGATTCATTCATTTTGCTCTGTATG 57.339 33.333 0.00 0.00 0.00 2.39
3514 3732 9.399797 TGTAGATTCATTCATTTTGCTCTGTAT 57.600 29.630 0.00 0.00 0.00 2.29
3515 3733 8.668353 GTGTAGATTCATTCATTTTGCTCTGTA 58.332 33.333 0.00 0.00 0.00 2.74
3516 3734 7.392673 AGTGTAGATTCATTCATTTTGCTCTGT 59.607 33.333 0.00 0.00 0.00 3.41
3517 3735 7.759465 AGTGTAGATTCATTCATTTTGCTCTG 58.241 34.615 0.00 0.00 0.00 3.35
3518 3736 7.828223 AGAGTGTAGATTCATTCATTTTGCTCT 59.172 33.333 0.00 0.00 0.00 4.09
3519 3737 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
3520 3738 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
3545 3763 9.565090 ACATGCAGATGTATGTAGACATATTTT 57.435 29.630 13.88 0.00 46.83 1.82
3555 3773 5.147767 AGGGAGTACATGCAGATGTATGTA 58.852 41.667 16.64 16.64 46.83 2.29
3557 3775 4.282957 AGAGGGAGTACATGCAGATGTATG 59.717 45.833 9.06 9.06 44.95 2.39
3558 3776 4.282957 CAGAGGGAGTACATGCAGATGTAT 59.717 45.833 3.59 0.00 44.95 2.29
3559 3777 3.638627 CAGAGGGAGTACATGCAGATGTA 59.361 47.826 0.00 0.00 41.27 2.29
3560 3778 2.433604 CAGAGGGAGTACATGCAGATGT 59.566 50.000 0.00 0.00 45.24 3.06
3561 3779 2.433604 ACAGAGGGAGTACATGCAGATG 59.566 50.000 0.00 0.00 35.49 2.90
3562 3780 2.756907 ACAGAGGGAGTACATGCAGAT 58.243 47.619 0.00 0.00 0.00 2.90
3563 3781 2.238084 ACAGAGGGAGTACATGCAGA 57.762 50.000 0.00 0.00 0.00 4.26
3564 3782 4.081420 AGTTTACAGAGGGAGTACATGCAG 60.081 45.833 0.00 0.00 0.00 4.41
3565 3783 3.838317 AGTTTACAGAGGGAGTACATGCA 59.162 43.478 0.00 0.00 0.00 3.96
3566 3784 4.473477 AGTTTACAGAGGGAGTACATGC 57.527 45.455 0.00 0.00 0.00 4.06
3572 3790 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3573 3791 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
3574 3792 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
3621 3839 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3622 3840 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3623 3841 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3624 3842 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3625 3843 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3626 3844 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3627 3845 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3628 3846 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3629 3847 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3630 3848 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
3631 3849 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3632 3850 9.289782 GACTACTCCCTCCGTAAACTAATATAA 57.710 37.037 0.00 0.00 0.00 0.98
3633 3851 7.885399 GGACTACTCCCTCCGTAAACTAATATA 59.115 40.741 0.00 0.00 0.00 0.86
3634 3852 6.718912 GGACTACTCCCTCCGTAAACTAATAT 59.281 42.308 0.00 0.00 0.00 1.28
3635 3853 6.064717 GGACTACTCCCTCCGTAAACTAATA 58.935 44.000 0.00 0.00 0.00 0.98
3636 3854 4.892345 GGACTACTCCCTCCGTAAACTAAT 59.108 45.833 0.00 0.00 0.00 1.73
3637 3855 4.263905 TGGACTACTCCCTCCGTAAACTAA 60.264 45.833 0.00 0.00 35.34 2.24
3638 3856 3.266772 TGGACTACTCCCTCCGTAAACTA 59.733 47.826 0.00 0.00 35.34 2.24
3639 3857 2.042162 TGGACTACTCCCTCCGTAAACT 59.958 50.000 0.00 0.00 35.34 2.66
3640 3858 2.450476 TGGACTACTCCCTCCGTAAAC 58.550 52.381 0.00 0.00 35.34 2.01
3641 3859 2.905415 TGGACTACTCCCTCCGTAAA 57.095 50.000 0.00 0.00 35.34 2.01
3642 3860 3.461085 ACTATGGACTACTCCCTCCGTAA 59.539 47.826 0.00 0.00 35.34 3.18
3643 3861 3.051581 ACTATGGACTACTCCCTCCGTA 58.948 50.000 0.00 0.00 35.34 4.02
3644 3862 1.851653 ACTATGGACTACTCCCTCCGT 59.148 52.381 0.00 0.00 35.34 4.69
3645 3863 2.158652 TCACTATGGACTACTCCCTCCG 60.159 54.545 0.00 0.00 35.34 4.63
3646 3864 3.596940 TCACTATGGACTACTCCCTCC 57.403 52.381 0.00 0.00 35.34 4.30
3647 3865 5.836358 AGATTTCACTATGGACTACTCCCTC 59.164 44.000 0.00 0.00 35.34 4.30
3648 3866 5.782925 AGATTTCACTATGGACTACTCCCT 58.217 41.667 0.00 0.00 35.34 4.20
3649 3867 5.836358 AGAGATTTCACTATGGACTACTCCC 59.164 44.000 0.00 0.00 35.34 4.30
3650 3868 6.969993 AGAGATTTCACTATGGACTACTCC 57.030 41.667 0.00 0.00 37.04 3.85
3655 3873 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
3656 3874 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
3674 3892 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3675 3893 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3676 3894 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3677 3895 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3678 3896 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3679 3897 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3680 3898 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3681 3899 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3682 3900 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3683 3901 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3684 3902 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3685 3903 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3686 3904 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3687 3905 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3688 3906 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3689 3907 3.372025 GGTAAGTACTCCCTCCGTTCCTA 60.372 52.174 0.00 0.00 0.00 2.94
3690 3908 2.622714 GGTAAGTACTCCCTCCGTTCCT 60.623 54.545 0.00 0.00 0.00 3.36
3691 3909 1.753649 GGTAAGTACTCCCTCCGTTCC 59.246 57.143 0.00 0.00 0.00 3.62
3692 3910 2.450476 TGGTAAGTACTCCCTCCGTTC 58.550 52.381 11.62 0.00 0.00 3.95
3693 3911 2.610438 TGGTAAGTACTCCCTCCGTT 57.390 50.000 11.62 0.00 0.00 4.44
3694 3912 2.042162 TCTTGGTAAGTACTCCCTCCGT 59.958 50.000 11.62 0.00 0.00 4.69
3695 3913 2.731572 TCTTGGTAAGTACTCCCTCCG 58.268 52.381 11.62 2.61 0.00 4.63
3696 3914 4.095211 AGTTCTTGGTAAGTACTCCCTCC 58.905 47.826 11.62 6.04 34.53 4.30
3697 3915 5.327616 GAGTTCTTGGTAAGTACTCCCTC 57.672 47.826 13.92 2.00 45.04 4.30
3716 3934 9.998106 ACAAGATAGTAACAAATACAACAGAGT 57.002 29.630 0.00 0.00 36.94 3.24
3781 4001 4.236527 ACCTGGTCAAACTCAGAAAACT 57.763 40.909 0.00 0.00 33.11 2.66
3945 4205 8.919777 ATAAGACATATAAGGTTTGCCCTAAC 57.080 34.615 0.00 0.00 45.47 2.34
3975 4235 7.460214 AATTAACATATAACCCTCTGTCCCA 57.540 36.000 0.00 0.00 0.00 4.37
4007 4268 9.462606 TCAGTAACTGAGTCTAGATACAAATGA 57.537 33.333 0.00 0.00 35.39 2.57
4036 4297 4.219507 TCCTGCTTCTCTAGAGTTGAGTTG 59.780 45.833 19.21 11.53 33.59 3.16
4037 4298 4.411927 TCCTGCTTCTCTAGAGTTGAGTT 58.588 43.478 19.21 0.00 33.59 3.01
4038 4299 4.040936 TCCTGCTTCTCTAGAGTTGAGT 57.959 45.455 19.21 0.00 33.59 3.41
4039 4300 5.398603 TTTCCTGCTTCTCTAGAGTTGAG 57.601 43.478 19.21 15.47 0.00 3.02
4040 4301 6.127310 GGTATTTCCTGCTTCTCTAGAGTTGA 60.127 42.308 19.21 6.39 0.00 3.18
4056 4317 9.753674 TGATTTCTAAAACAGATGGTATTTCCT 57.246 29.630 0.00 0.00 37.07 3.36
4109 4370 1.808411 CCACGCCACAGTCAGTTAAT 58.192 50.000 0.00 0.00 0.00 1.40
4118 4379 0.031857 TGAAAATTGCCACGCCACAG 59.968 50.000 0.00 0.00 0.00 3.66
4120 4381 0.031994 AGTGAAAATTGCCACGCCAC 59.968 50.000 5.23 0.00 38.26 5.01
4125 4386 1.340889 TCCTGCAGTGAAAATTGCCAC 59.659 47.619 13.81 3.10 39.54 5.01
4265 4527 4.737855 ATAGTGCCAAACTGACGACTAT 57.262 40.909 0.00 0.00 40.26 2.12
4298 4560 5.186198 TCTAATGCTAGAAGGCAGTTTTCC 58.814 41.667 0.00 0.00 45.75 3.13
4376 4641 4.890988 TGGGATTCAGTCCTCCACTATAA 58.109 43.478 0.00 0.00 46.91 0.98
4377 4642 4.552883 TGGGATTCAGTCCTCCACTATA 57.447 45.455 0.00 0.00 46.91 1.31
4446 4759 4.927267 TGAGGTTGGAGTGGATGTAAAT 57.073 40.909 0.00 0.00 0.00 1.40
4489 4804 7.390440 CCAAAGTGTCTTTGATTGTACCATAGA 59.610 37.037 19.55 0.00 0.00 1.98
4588 4965 8.528643 TCCTACTCGACAAATTATCTCAGAAAA 58.471 33.333 0.00 0.00 0.00 2.29
4589 4966 8.063200 TCCTACTCGACAAATTATCTCAGAAA 57.937 34.615 0.00 0.00 0.00 2.52
4600 4977 6.647067 CAGAGAACTTTTCCTACTCGACAAAT 59.353 38.462 0.00 0.00 33.53 2.32
4634 5011 1.756538 ACCAAAGCAAACAGGGAACAG 59.243 47.619 0.00 0.00 0.00 3.16
4675 5052 2.485814 GCATCTCTTTGGGTCTGTTGAC 59.514 50.000 0.00 0.00 42.22 3.18
4786 5163 9.171877 AGAGTCTTGCCTTTAAGATTATCTTTG 57.828 33.333 13.00 4.43 38.79 2.77
4968 5347 4.454678 TCAAGTATTAGGAAGCCATGCAG 58.545 43.478 0.00 0.00 0.00 4.41
4981 5361 7.561722 AGGTACATCTGAAGAGCTCAAGTATTA 59.438 37.037 17.77 0.00 32.17 0.98
4991 5371 3.338249 TGCAAAGGTACATCTGAAGAGC 58.662 45.455 0.00 0.00 0.00 4.09
4993 5373 5.559770 TCAATGCAAAGGTACATCTGAAGA 58.440 37.500 0.00 0.00 0.00 2.87
4994 5374 5.885230 TCAATGCAAAGGTACATCTGAAG 57.115 39.130 0.00 0.00 0.00 3.02
5021 5401 3.319689 TGCCTAGTATACGCAATGTAGCA 59.680 43.478 1.93 0.32 36.25 3.49
5036 5416 2.308866 AGCATTTTACACCCTGCCTAGT 59.691 45.455 0.00 0.00 35.21 2.57
5037 5417 3.004752 AGCATTTTACACCCTGCCTAG 57.995 47.619 0.00 0.00 35.21 3.02
5041 5421 2.035832 ACACAAGCATTTTACACCCTGC 59.964 45.455 0.00 0.00 34.85 4.85
5087 5467 1.338020 GGTTCAGTGTTTGGGAGCAAG 59.662 52.381 0.00 0.00 0.00 4.01
5099 5479 6.317789 TGCAAAGATCTAAAAGGTTCAGTG 57.682 37.500 0.00 0.00 0.00 3.66
5105 5485 4.333926 GCTCGATGCAAAGATCTAAAAGGT 59.666 41.667 0.00 0.00 42.31 3.50
5122 5507 5.787380 TGTTCATAATCTAGCATGCTCGAT 58.213 37.500 26.57 25.52 31.04 3.59
5125 5510 9.212641 TCTTTATGTTCATAATCTAGCATGCTC 57.787 33.333 26.57 6.09 0.00 4.26
5196 5581 1.218047 GGCACGGTCTATCACTGCA 59.782 57.895 0.00 0.00 34.19 4.41
5507 5920 7.041098 GCTTGTACATACATATTTTCAGAGGGG 60.041 40.741 0.00 0.00 35.89 4.79
5508 5921 7.716998 AGCTTGTACATACATATTTTCAGAGGG 59.283 37.037 0.00 0.00 35.89 4.30
5509 5922 8.668510 AGCTTGTACATACATATTTTCAGAGG 57.331 34.615 0.00 0.00 35.89 3.69
5599 6344 9.941325 ACAATATGAAATGCATAAGGTTTTTCA 57.059 25.926 10.78 10.78 42.45 2.69
5993 6738 1.872952 CAACGACACTGAATGAAGCCA 59.127 47.619 0.00 0.00 0.00 4.75
6004 6749 0.732571 CCAGCAACAACAACGACACT 59.267 50.000 0.00 0.00 0.00 3.55
6012 6757 1.069978 TCATCGACTCCAGCAACAACA 59.930 47.619 0.00 0.00 0.00 3.33
6021 6766 1.934220 GACCTGCGTCATCGACTCCA 61.934 60.000 0.00 0.00 38.99 3.86
6120 6865 2.100631 GCGGAGGACATGTTCACCG 61.101 63.158 31.72 31.72 43.84 4.94
6220 6965 2.346803 GAGGACTATTTCAAGCGTGCA 58.653 47.619 0.00 0.00 0.00 4.57
6253 6998 1.088340 TCTCGATCGACCTCGGTGAC 61.088 60.000 15.15 0.00 39.13 3.67
6310 7055 2.046023 CCGCCAAGATGCACCTGA 60.046 61.111 0.00 0.00 0.00 3.86
6323 7068 1.311859 TGATTCTCATGCATTCCGCC 58.688 50.000 0.00 0.00 41.33 6.13
6418 7165 0.687757 AGGCCAACTCGCTCATCCTA 60.688 55.000 5.01 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.