Multiple sequence alignment - TraesCS1A01G172400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G172400 chr1A 100.000 2552 0 0 1 2552 308247137 308244586 0.000000e+00 4713.0
1 TraesCS1A01G172400 chr1A 95.782 972 39 2 1 971 472208691 472207721 0.000000e+00 1567.0
2 TraesCS1A01G172400 chr1A 95.692 975 38 3 1 971 101690612 101691586 0.000000e+00 1565.0
3 TraesCS1A01G172400 chr1D 94.581 1587 78 7 971 2552 451672999 451671416 0.000000e+00 2447.0
4 TraesCS1A01G172400 chr1D 93.966 1591 81 12 971 2552 451655390 451653806 0.000000e+00 2392.0
5 TraesCS1A01G172400 chr1D 92.839 1592 67 18 971 2552 347252589 347251035 0.000000e+00 2265.0
6 TraesCS1A01G172400 chr1D 93.006 1344 66 8 971 2304 481625391 481624066 0.000000e+00 1936.0
7 TraesCS1A01G172400 chr1D 91.878 1342 80 9 971 2306 464037964 464039282 0.000000e+00 1847.0
8 TraesCS1A01G172400 chr1D 95.782 972 41 0 1 972 479553866 479554837 0.000000e+00 1568.0
9 TraesCS1A01G172400 chr1D 95.495 222 10 0 2331 2552 481624067 481623846 3.120000e-94 355.0
10 TraesCS1A01G172400 chr2D 92.888 1603 89 11 971 2552 12543719 12542121 0.000000e+00 2305.0
11 TraesCS1A01G172400 chr2D 91.773 1483 99 14 1084 2552 551247277 551248750 0.000000e+00 2041.0
12 TraesCS1A01G172400 chr2D 96.186 970 37 0 1 970 366071142 366070173 0.000000e+00 1587.0
13 TraesCS1A01G172400 chr2D 96.162 964 37 0 1 964 124835117 124836080 0.000000e+00 1576.0
14 TraesCS1A01G172400 chr2D 93.523 772 34 7 1795 2552 604092953 604093722 0.000000e+00 1134.0
15 TraesCS1A01G172400 chr6D 92.492 1585 83 6 971 2550 323167066 323168619 0.000000e+00 2235.0
16 TraesCS1A01G172400 chr6D 93.606 1345 68 9 971 2306 312543921 312542586 0.000000e+00 1991.0
17 TraesCS1A01G172400 chr6D 93.314 1346 72 8 971 2306 329896404 329895067 0.000000e+00 1971.0
18 TraesCS1A01G172400 chr6D 88.566 1618 113 23 971 2550 14243003 14244586 0.000000e+00 1897.0
19 TraesCS1A01G172400 chr6D 95.954 964 39 0 1 964 90910549 90911512 0.000000e+00 1565.0
20 TraesCS1A01G172400 chr6D 92.088 1087 57 13 1484 2552 459068893 459069968 0.000000e+00 1504.0
21 TraesCS1A01G172400 chr6D 94.771 306 15 1 2248 2552 25859457 25859762 2.300000e-130 475.0
22 TraesCS1A01G172400 chr6D 95.327 214 9 1 2339 2552 329895069 329894857 3.150000e-89 339.0
23 TraesCS1A01G172400 chr6D 95.652 161 7 0 2339 2499 448519215 448519375 2.520000e-65 259.0
24 TraesCS1A01G172400 chr6D 97.059 68 2 0 2485 2552 448519443 448519510 5.770000e-22 115.0
25 TraesCS1A01G172400 chr6A 91.895 1604 105 9 973 2552 574945653 574944051 0.000000e+00 2218.0
26 TraesCS1A01G172400 chr5D 91.630 1601 97 14 971 2552 353835248 353833666 0.000000e+00 2180.0
27 TraesCS1A01G172400 chr5D 91.193 1601 105 17 974 2552 18407627 18406041 0.000000e+00 2143.0
28 TraesCS1A01G172400 chr5D 90.693 1601 123 16 966 2552 386170224 386171812 0.000000e+00 2108.0
29 TraesCS1A01G172400 chr5D 91.235 1506 97 16 971 2455 257136744 257138235 0.000000e+00 2017.0
30 TraesCS1A01G172400 chr5D 93.592 1342 73 6 971 2306 45518559 45517225 0.000000e+00 1989.0
31 TraesCS1A01G172400 chr5D 93.811 614 32 4 1943 2552 486704750 486704139 0.000000e+00 918.0
32 TraesCS1A01G172400 chr4D 92.165 1506 82 17 971 2459 43272364 43270878 0.000000e+00 2095.0
33 TraesCS1A01G172400 chr4D 93.274 1338 75 9 972 2302 78732397 78731068 0.000000e+00 1958.0
34 TraesCS1A01G172400 chr4D 94.971 517 23 3 2038 2552 495797668 495797153 0.000000e+00 808.0
35 TraesCS1A01G172400 chr3D 90.256 1601 123 16 971 2552 80249201 80250787 0.000000e+00 2061.0
36 TraesCS1A01G172400 chr7B 89.717 1624 118 14 969 2552 27463670 27465284 0.000000e+00 2028.0
37 TraesCS1A01G172400 chr7B 89.317 1507 102 26 971 2456 337148778 337150246 0.000000e+00 1836.0
38 TraesCS1A01G172400 chrUn 93.903 1345 63 10 971 2306 43408208 43409542 0.000000e+00 2012.0
39 TraesCS1A01G172400 chrUn 90.279 1543 93 21 971 2494 368601022 368602526 0.000000e+00 1965.0
40 TraesCS1A01G172400 chrUn 92.491 1345 81 11 971 2306 20573683 20575016 0.000000e+00 1906.0
41 TraesCS1A01G172400 chrUn 90.060 1509 91 22 971 2459 93726105 93724636 0.000000e+00 1901.0
42 TraesCS1A01G172400 chrUn 92.446 1337 84 11 971 2302 355014233 355015557 0.000000e+00 1893.0
43 TraesCS1A01G172400 chrUn 89.256 1545 108 23 971 2494 87140725 87142232 0.000000e+00 1881.0
44 TraesCS1A01G172400 chrUn 91.424 1376 68 18 1214 2552 110637310 110638672 0.000000e+00 1842.0
45 TraesCS1A01G172400 chrUn 88.371 1565 100 34 971 2494 43129130 43127607 0.000000e+00 1807.0
46 TraesCS1A01G172400 chrUn 88.388 1507 108 26 971 2456 88504710 88506170 0.000000e+00 1751.0
47 TraesCS1A01G172400 chrUn 92.799 986 53 9 1327 2306 270202856 270201883 0.000000e+00 1411.0
48 TraesCS1A01G172400 chrUn 88.257 1090 71 29 1389 2459 353552995 353551944 0.000000e+00 1251.0
49 TraesCS1A01G172400 chrUn 87.934 547 48 11 1919 2455 60559861 60560399 1.670000e-176 628.0
50 TraesCS1A01G172400 chrUn 95.763 118 5 0 2339 2456 43409540 43409657 9.320000e-45 191.0
51 TraesCS1A01G172400 chrUn 94.309 123 6 1 2339 2461 20575014 20575135 1.210000e-43 187.0
52 TraesCS1A01G172400 chrUn 83.708 178 6 3 2339 2493 302375561 302375738 2.050000e-31 147.0
53 TraesCS1A01G172400 chrUn 98.462 65 1 0 2435 2499 20575133 20575197 5.770000e-22 115.0
54 TraesCS1A01G172400 chrUn 96.970 66 2 0 2485 2550 368602601 368602666 7.460000e-21 111.0
55 TraesCS1A01G172400 chrUn 100.000 59 0 0 2441 2499 43409665 43409723 2.680000e-20 110.0
56 TraesCS1A01G172400 chrUn 95.588 68 3 0 2485 2552 43409793 43409860 2.680000e-20 110.0
57 TraesCS1A01G172400 chrUn 95.455 66 3 0 2485 2550 93724505 93724440 3.470000e-19 106.0
58 TraesCS1A01G172400 chrUn 95.455 66 3 0 2485 2550 270201627 270201562 3.470000e-19 106.0
59 TraesCS1A01G172400 chrUn 95.455 66 3 0 2485 2550 302375805 302375870 3.470000e-19 106.0
60 TraesCS1A01G172400 chrUn 92.424 66 4 1 2485 2550 353551814 353551750 2.700000e-15 93.5
61 TraesCS1A01G172400 chr4B 88.910 1614 132 18 971 2552 35634919 35636517 0.000000e+00 1945.0
62 TraesCS1A01G172400 chr2A 95.885 972 38 2 1 971 633676546 633677516 0.000000e+00 1572.0
63 TraesCS1A01G172400 chr3A 95.791 974 38 2 1 971 641570341 641571314 0.000000e+00 1568.0
64 TraesCS1A01G172400 chr3A 87.397 1333 147 13 971 2300 47852185 47853499 0.000000e+00 1511.0
65 TraesCS1A01G172400 chr5A 95.782 972 40 1 1 971 610144991 610145962 0.000000e+00 1567.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G172400 chr1A 308244586 308247137 2551 True 4713.00 4713 100.000000 1 2552 1 chr1A.!!$R1 2551
1 TraesCS1A01G172400 chr1A 472207721 472208691 970 True 1567.00 1567 95.782000 1 971 1 chr1A.!!$R2 970
2 TraesCS1A01G172400 chr1A 101690612 101691586 974 False 1565.00 1565 95.692000 1 971 1 chr1A.!!$F1 970
3 TraesCS1A01G172400 chr1D 451671416 451672999 1583 True 2447.00 2447 94.581000 971 2552 1 chr1D.!!$R3 1581
4 TraesCS1A01G172400 chr1D 451653806 451655390 1584 True 2392.00 2392 93.966000 971 2552 1 chr1D.!!$R2 1581
5 TraesCS1A01G172400 chr1D 347251035 347252589 1554 True 2265.00 2265 92.839000 971 2552 1 chr1D.!!$R1 1581
6 TraesCS1A01G172400 chr1D 464037964 464039282 1318 False 1847.00 1847 91.878000 971 2306 1 chr1D.!!$F1 1335
7 TraesCS1A01G172400 chr1D 479553866 479554837 971 False 1568.00 1568 95.782000 1 972 1 chr1D.!!$F2 971
8 TraesCS1A01G172400 chr1D 481623846 481625391 1545 True 1145.50 1936 94.250500 971 2552 2 chr1D.!!$R4 1581
9 TraesCS1A01G172400 chr2D 12542121 12543719 1598 True 2305.00 2305 92.888000 971 2552 1 chr2D.!!$R1 1581
10 TraesCS1A01G172400 chr2D 551247277 551248750 1473 False 2041.00 2041 91.773000 1084 2552 1 chr2D.!!$F2 1468
11 TraesCS1A01G172400 chr2D 366070173 366071142 969 True 1587.00 1587 96.186000 1 970 1 chr2D.!!$R2 969
12 TraesCS1A01G172400 chr2D 124835117 124836080 963 False 1576.00 1576 96.162000 1 964 1 chr2D.!!$F1 963
13 TraesCS1A01G172400 chr2D 604092953 604093722 769 False 1134.00 1134 93.523000 1795 2552 1 chr2D.!!$F3 757
14 TraesCS1A01G172400 chr6D 323167066 323168619 1553 False 2235.00 2235 92.492000 971 2550 1 chr6D.!!$F4 1579
15 TraesCS1A01G172400 chr6D 312542586 312543921 1335 True 1991.00 1991 93.606000 971 2306 1 chr6D.!!$R1 1335
16 TraesCS1A01G172400 chr6D 14243003 14244586 1583 False 1897.00 1897 88.566000 971 2550 1 chr6D.!!$F1 1579
17 TraesCS1A01G172400 chr6D 90910549 90911512 963 False 1565.00 1565 95.954000 1 964 1 chr6D.!!$F3 963
18 TraesCS1A01G172400 chr6D 459068893 459069968 1075 False 1504.00 1504 92.088000 1484 2552 1 chr6D.!!$F5 1068
19 TraesCS1A01G172400 chr6D 329894857 329896404 1547 True 1155.00 1971 94.320500 971 2552 2 chr6D.!!$R2 1581
20 TraesCS1A01G172400 chr6A 574944051 574945653 1602 True 2218.00 2218 91.895000 973 2552 1 chr6A.!!$R1 1579
21 TraesCS1A01G172400 chr5D 353833666 353835248 1582 True 2180.00 2180 91.630000 971 2552 1 chr5D.!!$R3 1581
22 TraesCS1A01G172400 chr5D 18406041 18407627 1586 True 2143.00 2143 91.193000 974 2552 1 chr5D.!!$R1 1578
23 TraesCS1A01G172400 chr5D 386170224 386171812 1588 False 2108.00 2108 90.693000 966 2552 1 chr5D.!!$F2 1586
24 TraesCS1A01G172400 chr5D 257136744 257138235 1491 False 2017.00 2017 91.235000 971 2455 1 chr5D.!!$F1 1484
25 TraesCS1A01G172400 chr5D 45517225 45518559 1334 True 1989.00 1989 93.592000 971 2306 1 chr5D.!!$R2 1335
26 TraesCS1A01G172400 chr5D 486704139 486704750 611 True 918.00 918 93.811000 1943 2552 1 chr5D.!!$R4 609
27 TraesCS1A01G172400 chr4D 43270878 43272364 1486 True 2095.00 2095 92.165000 971 2459 1 chr4D.!!$R1 1488
28 TraesCS1A01G172400 chr4D 78731068 78732397 1329 True 1958.00 1958 93.274000 972 2302 1 chr4D.!!$R2 1330
29 TraesCS1A01G172400 chr4D 495797153 495797668 515 True 808.00 808 94.971000 2038 2552 1 chr4D.!!$R3 514
30 TraesCS1A01G172400 chr3D 80249201 80250787 1586 False 2061.00 2061 90.256000 971 2552 1 chr3D.!!$F1 1581
31 TraesCS1A01G172400 chr7B 27463670 27465284 1614 False 2028.00 2028 89.717000 969 2552 1 chr7B.!!$F1 1583
32 TraesCS1A01G172400 chr7B 337148778 337150246 1468 False 1836.00 1836 89.317000 971 2456 1 chr7B.!!$F2 1485
33 TraesCS1A01G172400 chrUn 355014233 355015557 1324 False 1893.00 1893 92.446000 971 2302 1 chrUn.!!$F5 1331
34 TraesCS1A01G172400 chrUn 87140725 87142232 1507 False 1881.00 1881 89.256000 971 2494 1 chrUn.!!$F2 1523
35 TraesCS1A01G172400 chrUn 110637310 110638672 1362 False 1842.00 1842 91.424000 1214 2552 1 chrUn.!!$F4 1338
36 TraesCS1A01G172400 chrUn 43127607 43129130 1523 True 1807.00 1807 88.371000 971 2494 1 chrUn.!!$R1 1523
37 TraesCS1A01G172400 chrUn 88504710 88506170 1460 False 1751.00 1751 88.388000 971 2456 1 chrUn.!!$F3 1485
38 TraesCS1A01G172400 chrUn 368601022 368602666 1644 False 1038.00 1965 93.624500 971 2550 2 chrUn.!!$F9 1579
39 TraesCS1A01G172400 chrUn 93724440 93726105 1665 True 1003.50 1901 92.757500 971 2550 2 chrUn.!!$R2 1579
40 TraesCS1A01G172400 chrUn 270201562 270202856 1294 True 758.50 1411 94.127000 1327 2550 2 chrUn.!!$R3 1223
41 TraesCS1A01G172400 chrUn 20573683 20575197 1514 False 736.00 1906 95.087333 971 2499 3 chrUn.!!$F6 1528
42 TraesCS1A01G172400 chrUn 353551750 353552995 1245 True 672.25 1251 90.340500 1389 2550 2 chrUn.!!$R4 1161
43 TraesCS1A01G172400 chrUn 60559861 60560399 538 False 628.00 628 87.934000 1919 2455 1 chrUn.!!$F1 536
44 TraesCS1A01G172400 chrUn 43408208 43409860 1652 False 605.75 2012 96.313500 971 2552 4 chrUn.!!$F7 1581
45 TraesCS1A01G172400 chr4B 35634919 35636517 1598 False 1945.00 1945 88.910000 971 2552 1 chr4B.!!$F1 1581
46 TraesCS1A01G172400 chr2A 633676546 633677516 970 False 1572.00 1572 95.885000 1 971 1 chr2A.!!$F1 970
47 TraesCS1A01G172400 chr3A 641570341 641571314 973 False 1568.00 1568 95.791000 1 971 1 chr3A.!!$F2 970
48 TraesCS1A01G172400 chr3A 47852185 47853499 1314 False 1511.00 1511 87.397000 971 2300 1 chr3A.!!$F1 1329
49 TraesCS1A01G172400 chr5A 610144991 610145962 971 False 1567.00 1567 95.782000 1 971 1 chr5A.!!$F1 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 466 0.034089 GTGCATTACCAAGAGGGCCT 60.034 55.0 5.25 5.25 42.05 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1898 1.484038 TGCATTTGGCCCATTAGTCC 58.516 50.0 0.0 0.0 43.89 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.903045 TCTTTACTTCCGGACCATTCTT 57.097 40.909 1.83 0.00 0.00 2.52
54 55 5.914898 TTCTTGAGTTCCTCGTCATATCA 57.085 39.130 0.00 0.00 32.35 2.15
85 86 4.993029 TCCAAAACTCCGAACAACATTT 57.007 36.364 0.00 0.00 0.00 2.32
263 268 6.879276 TCTACGAAGATCTTTATCGGTCAT 57.121 37.500 17.21 1.93 40.71 3.06
321 326 4.750098 CGATATGTTACTTGCCCGAGATTT 59.250 41.667 0.00 0.00 0.00 2.17
438 444 3.248266 CAATGCTTGCAAGGCTTAAGTC 58.752 45.455 27.10 8.86 0.00 3.01
460 466 0.034089 GTGCATTACCAAGAGGGCCT 60.034 55.000 5.25 5.25 42.05 5.19
643 649 7.315890 TGCATAATCTCATAGTCATAGGAACG 58.684 38.462 0.00 0.00 0.00 3.95
697 704 6.704493 ACAAACTAAACGATCAAGTGCTAAGA 59.296 34.615 0.00 0.00 0.00 2.10
748 755 3.129262 TCTCCTAATGATGTGACCCCA 57.871 47.619 0.00 0.00 0.00 4.96
770 777 6.477688 CCCATTAATCAAATGACAACTCATGC 59.522 38.462 0.00 0.00 46.81 4.06
839 846 3.292460 AGAGGCATACTAGTGACACTCC 58.708 50.000 12.39 6.00 0.00 3.85
1008 1015 1.206610 GCTCTGAGCTCCATGTCTTCA 59.793 52.381 21.93 0.00 38.45 3.02
1011 1018 3.372897 TCTGAGCTCCATGTCTTCATCT 58.627 45.455 12.15 0.00 31.15 2.90
1025 1032 2.919856 ATCTAGCTCCCGCGCCAT 60.920 61.111 0.00 0.00 42.32 4.40
1128 1136 0.105964 CTCACACACCGAGGAACCAA 59.894 55.000 0.00 0.00 0.00 3.67
1142 1151 3.250040 AGGAACCAAAATCGTTCGTTCTG 59.750 43.478 0.00 0.00 40.46 3.02
1258 1270 4.233005 GCAGGTGAAATGCTTCTTTCTTC 58.767 43.478 7.96 0.00 40.59 2.87
1406 1420 0.100325 CGCACTGACAGAGAGCTAGG 59.900 60.000 10.08 0.00 36.21 3.02
1501 1515 6.291377 TGCAATTACTTTTGGGCATTTGTAA 58.709 32.000 0.00 0.00 0.00 2.41
1505 1519 9.482627 CAATTACTTTTGGGCATTTGTAAGTAA 57.517 29.630 0.00 0.00 40.34 2.24
1924 2058 5.232202 GCTGAAACTTTTTGTGGAAGCTAAC 59.768 40.000 0.00 0.00 0.00 2.34
2240 2410 2.084546 GTTTAGGGCTGCACTGGTAAG 58.915 52.381 16.10 0.00 0.00 2.34
2379 2585 6.403855 CGTGAGAGTGGTTTTCCTTTGTTTTA 60.404 38.462 0.00 0.00 41.38 1.52
2535 2934 2.131972 GTTTGGGCACGGACATTTTTC 58.868 47.619 0.00 0.00 0.00 2.29
2537 2936 0.958091 TGGGCACGGACATTTTTCAG 59.042 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.852282 TCATTGATATGACGAGGAACTCA 57.148 39.130 0.00 0.0 45.13 3.41
54 55 5.102953 TCGGAGTTTTGGATGAGATCATT 57.897 39.130 0.00 0.0 36.57 2.57
85 86 5.491323 TGAGTTATGTATGTTGGTGACCA 57.509 39.130 0.00 0.0 0.00 4.02
144 149 4.543689 ACATAGTTCTCGAACCCATAGGA 58.456 43.478 6.20 0.0 42.06 2.94
321 326 4.761235 GGTATTGAGATACCGACGATCA 57.239 45.455 0.00 0.0 46.13 2.92
438 444 1.406539 GCCCTCTTGGTAATGCACATG 59.593 52.381 0.00 0.0 36.04 3.21
697 704 7.015098 TGTGATTGACTTGACCCATTTTGTTAT 59.985 33.333 0.00 0.0 0.00 1.89
748 755 7.414222 AGGCATGAGTTGTCATTTGATTAAT 57.586 32.000 0.00 0.0 40.84 1.40
839 846 7.060600 ACATGTGTGAATACATAGACAAACG 57.939 36.000 0.00 0.0 39.17 3.60
964 971 0.036388 GGGGATCTCAACGCTGAACA 60.036 55.000 0.00 0.0 0.00 3.18
965 972 0.250513 AGGGGATCTCAACGCTGAAC 59.749 55.000 0.00 0.0 0.00 3.18
1025 1032 1.683707 AGGCTCTGCATCCACGAGA 60.684 57.895 4.21 0.0 0.00 4.04
1142 1151 0.179156 CCCATTCTCATTGCACACGC 60.179 55.000 0.00 0.0 39.24 5.34
1258 1270 4.899239 GGCCAGAGCATCGACCCG 62.899 72.222 0.00 0.0 42.67 5.28
1406 1420 4.997395 TCTTCAACATCCTAAGCTCAACAC 59.003 41.667 0.00 0.0 0.00 3.32
1501 1515 2.093658 CACCCAGTGCGATTACCTTACT 60.094 50.000 0.00 0.0 0.00 2.24
1505 1519 1.563924 TACACCCAGTGCGATTACCT 58.436 50.000 0.00 0.0 36.98 3.08
1683 1780 9.485206 CATTGATCAAAAGTTTCTGAATTCCTT 57.515 29.630 13.09 0.0 0.00 3.36
1793 1898 1.484038 TGCATTTGGCCCATTAGTCC 58.516 50.000 0.00 0.0 43.89 3.85
1808 1913 2.708037 ATGGGCCTAATTGGATGCAT 57.292 45.000 4.53 0.0 38.35 3.96
2240 2410 3.707102 AGTCTTTCCATCTACCCTAGTGC 59.293 47.826 0.00 0.0 0.00 4.40
2379 2585 8.541899 TTTCTAACCCTCCAAAATTTTAGTGT 57.458 30.769 2.44 0.0 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.