Multiple sequence alignment - TraesCS1A01G171100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G171100 chr1A 100.000 9866 0 0 1 9866 306106034 306115899 0.000000e+00 18220.0
1 TraesCS1A01G171100 chr1A 92.857 126 9 0 5607 5732 306111522 306111647 6.090000e-42 183.0
2 TraesCS1A01G171100 chr1A 92.857 126 9 0 5489 5614 306111640 306111765 6.090000e-42 183.0
3 TraesCS1A01G171100 chr1D 94.936 5115 101 35 523 5622 241221888 241226859 0.000000e+00 7866.0
4 TraesCS1A01G171100 chr1D 97.669 2359 29 7 5669 8013 241226860 241229206 0.000000e+00 4028.0
5 TraesCS1A01G171100 chr1D 94.332 1482 31 8 8102 9554 241229201 241230658 0.000000e+00 2222.0
6 TraesCS1A01G171100 chr1D 85.828 501 62 7 2 497 431764057 431763561 3.160000e-144 523.0
7 TraesCS1A01G171100 chr1D 93.651 126 8 0 5607 5732 241226726 241226851 1.310000e-43 189.0
8 TraesCS1A01G171100 chr1D 93.846 65 3 1 9491 9554 241230715 241230779 8.160000e-16 97.1
9 TraesCS1A01G171100 chr1D 96.429 56 2 0 9551 9606 241230918 241230973 1.060000e-14 93.5
10 TraesCS1A01G171100 chr1D 100.000 41 0 0 5551 5591 241226860 241226900 1.060000e-09 76.8
11 TraesCS1A01G171100 chr1B 95.602 2706 75 11 5607 8284 332840662 332837973 0.000000e+00 4298.0
12 TraesCS1A01G171100 chr1B 93.884 2011 95 16 2434 4425 332843534 332841533 0.000000e+00 3007.0
13 TraesCS1A01G171100 chr1B 90.876 1666 81 24 523 2155 332845160 332843533 0.000000e+00 2169.0
14 TraesCS1A01G171100 chr1B 95.042 1311 32 15 8279 9571 332837894 332836599 0.000000e+00 2030.0
15 TraesCS1A01G171100 chr1B 96.680 994 24 7 4626 5614 332841526 332840537 0.000000e+00 1644.0
16 TraesCS1A01G171100 chr1B 90.476 210 17 3 9641 9848 332836578 332836370 3.510000e-69 274.0
17 TraesCS1A01G171100 chr1B 93.714 175 3 1 5731 5897 121347342 121347516 1.270000e-63 255.0
18 TraesCS1A01G171100 chr4A 87.377 507 58 6 1 504 571741327 571740824 2.390000e-160 577.0
19 TraesCS1A01G171100 chr4A 97.619 42 1 0 3273 3314 356552342 356552383 1.370000e-08 73.1
20 TraesCS1A01G171100 chr3D 87.226 501 58 5 1 497 562514474 562513976 5.170000e-157 566.0
21 TraesCS1A01G171100 chr3D 96.296 54 2 0 9515 9568 486745724 486745671 1.360000e-13 89.8
22 TraesCS1A01G171100 chr3D 94.643 56 2 1 9514 9568 79502030 79502085 1.770000e-12 86.1
23 TraesCS1A01G171100 chr3D 95.000 40 2 0 3276 3315 573740546 573740585 8.270000e-06 63.9
24 TraesCS1A01G171100 chr2A 87.026 501 57 7 1 497 66767337 66767833 8.650000e-155 558.0
25 TraesCS1A01G171100 chr2A 86.411 287 31 8 9584 9866 81015369 81015651 3.460000e-79 307.0
26 TraesCS1A01G171100 chr2A 84.669 287 35 8 9584 9866 459144723 459144442 2.710000e-70 278.0
27 TraesCS1A01G171100 chr2A 96.610 59 2 0 9510 9568 459145328 459145270 2.270000e-16 99.0
28 TraesCS1A01G171100 chr2A 98.182 55 1 0 9514 9568 81014768 81014822 8.160000e-16 97.1
29 TraesCS1A01G171100 chr2B 87.090 488 59 3 3 487 699213820 699213334 5.210000e-152 549.0
30 TraesCS1A01G171100 chr4B 85.658 509 66 6 1 504 183523250 183522744 6.790000e-146 529.0
31 TraesCS1A01G171100 chr4B 98.077 104 2 0 9306 9409 157013094 157013197 2.190000e-41 182.0
32 TraesCS1A01G171100 chr4B 96.364 55 2 0 9514 9568 273981545 273981599 3.790000e-14 91.6
33 TraesCS1A01G171100 chr7B 85.629 501 66 5 1 498 339619422 339618925 1.140000e-143 521.0
34 TraesCS1A01G171100 chr7B 92.683 41 3 0 3283 3323 418057526 418057486 1.070000e-04 60.2
35 TraesCS1A01G171100 chr5A 85.714 497 66 5 3 496 1773581 1774075 4.080000e-143 520.0
36 TraesCS1A01G171100 chr5A 94.000 50 3 0 3274 3323 185649746 185649795 1.060000e-09 76.8
37 TraesCS1A01G171100 chr3A 85.600 500 67 5 1 497 134257544 134257047 4.080000e-143 520.0
38 TraesCS1A01G171100 chr5D 91.667 60 5 0 9513 9572 518917275 518917334 6.350000e-12 84.2
39 TraesCS1A01G171100 chr5D 94.118 51 3 0 3273 3323 137975048 137974998 2.950000e-10 78.7
40 TraesCS1A01G171100 chr5B 94.000 50 3 0 3274 3323 187046404 187046355 1.060000e-09 76.8
41 TraesCS1A01G171100 chr5B 94.872 39 0 2 3278 3316 75335201 75335165 1.070000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G171100 chr1A 306106034 306115899 9865 False 18220.000000 18220 100.000000 1 9866 1 chr1A.!!$F1 9865
1 TraesCS1A01G171100 chr1D 241221888 241230973 9085 False 2081.771429 7866 95.837571 523 9606 7 chr1D.!!$F1 9083
2 TraesCS1A01G171100 chr1B 332836370 332845160 8790 True 2237.000000 4298 93.760000 523 9848 6 chr1B.!!$R1 9325
3 TraesCS1A01G171100 chr4A 571740824 571741327 503 True 577.000000 577 87.377000 1 504 1 chr4A.!!$R1 503
4 TraesCS1A01G171100 chr2A 81014768 81015651 883 False 202.050000 307 92.296500 9514 9866 2 chr2A.!!$F2 352
5 TraesCS1A01G171100 chr4B 183522744 183523250 506 True 529.000000 529 85.658000 1 504 1 chr4B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 277 0.042131 ACCGGAATGGGGACTAGACA 59.958 55.000 9.46 0.00 44.64 3.41 F
383 386 0.106419 AAAAACGAAGCCCTCCCACA 60.106 50.000 0.00 0.00 0.00 4.17 F
496 500 0.405585 TGCTTTTCTTGGGGAGGAGG 59.594 55.000 0.00 0.00 0.00 4.30 F
497 501 0.405973 GCTTTTCTTGGGGAGGAGGT 59.594 55.000 0.00 0.00 0.00 3.85 F
778 782 0.534412 CACAAAACCACCACCAGCAA 59.466 50.000 0.00 0.00 0.00 3.91 F
842 853 1.272554 AATTCGTCCCCTCCCAGTCC 61.273 60.000 0.00 0.00 0.00 3.85 F
2175 2218 1.065491 AGCGCAGTATTGAACCATGGA 60.065 47.619 21.47 0.00 0.00 3.41 F
2176 2219 1.331756 GCGCAGTATTGAACCATGGAG 59.668 52.381 21.47 0.00 0.00 3.86 F
2177 2220 2.632377 CGCAGTATTGAACCATGGAGT 58.368 47.619 21.47 5.42 0.00 3.85 F
3843 3898 2.773993 TTCTTGACCACGATTACCCC 57.226 50.000 0.00 0.00 0.00 4.95 F
4588 4663 2.163818 TTTCCACTACACAAGCCTCG 57.836 50.000 0.00 0.00 0.00 4.63 F
4830 4907 3.099905 CTCCACTCTGTCCTTGGACATA 58.900 50.000 21.09 13.98 34.35 2.29 F
5649 5729 2.222445 ACGCAAAACTATGACGTTCACC 59.778 45.455 0.00 0.00 32.10 4.02 F
6894 7003 0.178767 TCCATCCAGAGCGTGAATGG 59.821 55.000 1.48 1.48 35.30 3.16 F
7780 7890 3.601443 TCTGCTTCAGCTAGTTCCTTC 57.399 47.619 0.00 0.00 42.66 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 1895 0.895530 GTCAGTGGGGATTCTCGACA 59.104 55.000 1.33 0.0 0.00 4.35 R
2157 2200 2.632377 ACTCCATGGTTCAATACTGCG 58.368 47.619 12.58 0.0 0.00 5.18 R
2172 2215 3.519510 AGCTCAAATAGGTAGCAACTCCA 59.480 43.478 0.00 0.0 38.75 3.86 R
2173 2216 3.873952 CAGCTCAAATAGGTAGCAACTCC 59.126 47.826 0.00 0.0 38.75 3.85 R
2175 2218 4.020218 TCACAGCTCAAATAGGTAGCAACT 60.020 41.667 0.00 0.0 38.75 3.16 R
2176 2219 4.253685 TCACAGCTCAAATAGGTAGCAAC 58.746 43.478 0.00 0.0 38.75 4.17 R
3843 3898 3.491639 CGGTGAATGCAATAATGGCAATG 59.508 43.478 0.00 0.0 45.60 2.82 R
4235 4302 3.071479 GTTTATGTGAACCTCTGCCGAA 58.929 45.455 0.00 0.0 0.00 4.30 R
4242 4309 6.363357 GCTTGAATGTTGTTTATGTGAACCTC 59.637 38.462 0.00 0.0 0.00 3.85 R
5628 5708 2.222445 GGTGAACGTCATAGTTTTGCGT 59.778 45.455 0.00 0.0 37.38 5.24 R
5629 5709 2.478894 AGGTGAACGTCATAGTTTTGCG 59.521 45.455 0.00 0.0 34.00 4.85 R
5897 5985 2.508526 AGACTGGGAACAATCAAGTGC 58.491 47.619 0.00 0.0 39.57 4.40 R
6966 7075 1.068121 AGGCTGAGCACCTAAAACCT 58.932 50.000 6.82 0.0 35.10 3.50 R
8059 8169 0.179040 TTTGGAAACGAAGAGCGGGT 60.179 50.000 0.00 0.0 46.49 5.28 R
9133 9476 0.167908 AAACACACACACGCACACAG 59.832 50.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 7.037438 ACTTGTTGTAGTAGACAGTCGAAAAA 58.963 34.615 0.00 0.00 39.88 1.94
162 164 4.082845 TCCAACCTGAAGAAACACAAACA 58.917 39.130 0.00 0.00 0.00 2.83
167 169 7.255590 CCAACCTGAAGAAACACAAACATAGAT 60.256 37.037 0.00 0.00 0.00 1.98
224 226 0.105039 GATCCATCGGAGACACACCC 59.895 60.000 0.00 0.00 42.51 4.61
225 227 0.325671 ATCCATCGGAGACACACCCT 60.326 55.000 0.00 0.00 42.51 4.34
244 246 3.063704 ACACGCCCACCGACGATA 61.064 61.111 0.00 0.00 41.02 2.92
263 265 1.640917 ACTAGACACACCACCGGAAT 58.359 50.000 9.46 0.00 0.00 3.01
275 277 0.042131 ACCGGAATGGGGACTAGACA 59.958 55.000 9.46 0.00 44.64 3.41
276 278 1.200519 CCGGAATGGGGACTAGACAA 58.799 55.000 0.00 0.00 0.00 3.18
283 285 3.491766 TGGGGACTAGACAAGGAGAAT 57.508 47.619 0.00 0.00 0.00 2.40
290 292 7.147461 GGGGACTAGACAAGGAGAATCTTATTT 60.147 40.741 0.00 0.00 33.73 1.40
301 303 7.516452 AGGAGAATCTTATTTCATCTTCAGGG 58.484 38.462 0.00 0.00 33.73 4.45
308 310 2.578163 TTCATCTTCAGGGAGCCGCG 62.578 60.000 0.00 0.00 0.00 6.46
309 311 4.537433 ATCTTCAGGGAGCCGCGC 62.537 66.667 0.00 0.00 0.00 6.86
338 341 3.627577 GTCTTCCTGAGCAGAACACAAAA 59.372 43.478 0.00 0.00 0.00 2.44
345 348 3.311322 TGAGCAGAACACAAAACCTAACG 59.689 43.478 0.00 0.00 0.00 3.18
371 374 9.498307 GAAAGTTGAAGAAACATCTAAAAACGA 57.502 29.630 0.00 0.00 41.61 3.85
383 386 0.106419 AAAAACGAAGCCCTCCCACA 60.106 50.000 0.00 0.00 0.00 4.17
424 427 2.683475 GTGCCATGGCCCTAAGGT 59.317 61.111 33.44 0.00 41.09 3.50
430 434 2.203877 TGGCCCTAAGGTCACCGT 60.204 61.111 0.00 0.00 45.08 4.83
431 435 2.267961 GGCCCTAAGGTCACCGTG 59.732 66.667 0.00 0.00 37.86 4.94
473 477 2.658548 CTGGGGAAGCAAAGGAACC 58.341 57.895 0.00 0.00 0.00 3.62
474 478 0.900182 CTGGGGAAGCAAAGGAACCC 60.900 60.000 0.00 0.00 39.79 4.11
475 479 1.368268 TGGGGAAGCAAAGGAACCCT 61.368 55.000 0.00 0.00 40.31 4.34
476 480 0.702316 GGGGAAGCAAAGGAACCCTA 59.298 55.000 0.00 0.00 40.31 3.53
477 481 1.288037 GGGGAAGCAAAGGAACCCTAT 59.712 52.381 0.00 0.00 40.31 2.57
478 482 2.379005 GGGAAGCAAAGGAACCCTATG 58.621 52.381 0.00 0.00 37.75 2.23
479 483 1.751351 GGAAGCAAAGGAACCCTATGC 59.249 52.381 0.00 0.00 31.13 3.14
480 484 2.621668 GGAAGCAAAGGAACCCTATGCT 60.622 50.000 8.94 8.94 31.13 3.79
481 485 2.907458 AGCAAAGGAACCCTATGCTT 57.093 45.000 8.94 0.00 31.13 3.91
482 486 3.175438 AGCAAAGGAACCCTATGCTTT 57.825 42.857 8.94 0.00 40.99 3.51
483 487 3.510459 AGCAAAGGAACCCTATGCTTTT 58.490 40.909 8.94 0.00 38.69 2.27
484 488 3.511540 AGCAAAGGAACCCTATGCTTTTC 59.488 43.478 8.94 0.00 38.69 2.29
485 489 3.511540 GCAAAGGAACCCTATGCTTTTCT 59.488 43.478 0.00 0.00 38.69 2.52
486 490 4.021104 GCAAAGGAACCCTATGCTTTTCTT 60.021 41.667 0.00 0.00 38.69 2.52
487 491 5.473039 CAAAGGAACCCTATGCTTTTCTTG 58.527 41.667 0.00 0.00 38.69 3.02
488 492 3.701664 AGGAACCCTATGCTTTTCTTGG 58.298 45.455 0.00 0.00 28.47 3.61
489 493 2.760650 GGAACCCTATGCTTTTCTTGGG 59.239 50.000 0.00 0.00 40.37 4.12
490 494 2.532250 ACCCTATGCTTTTCTTGGGG 57.468 50.000 0.00 0.00 43.60 4.96
491 495 2.000048 ACCCTATGCTTTTCTTGGGGA 59.000 47.619 0.00 0.00 41.45 4.81
492 496 2.024941 ACCCTATGCTTTTCTTGGGGAG 60.025 50.000 0.00 0.00 41.45 4.30
493 497 2.659428 CCTATGCTTTTCTTGGGGAGG 58.341 52.381 0.00 0.00 0.00 4.30
494 498 2.242196 CCTATGCTTTTCTTGGGGAGGA 59.758 50.000 0.00 0.00 0.00 3.71
495 499 2.521547 ATGCTTTTCTTGGGGAGGAG 57.478 50.000 0.00 0.00 0.00 3.69
496 500 0.405585 TGCTTTTCTTGGGGAGGAGG 59.594 55.000 0.00 0.00 0.00 4.30
497 501 0.405973 GCTTTTCTTGGGGAGGAGGT 59.594 55.000 0.00 0.00 0.00 3.85
498 502 1.888391 GCTTTTCTTGGGGAGGAGGTG 60.888 57.143 0.00 0.00 0.00 4.00
499 503 1.425448 CTTTTCTTGGGGAGGAGGTGT 59.575 52.381 0.00 0.00 0.00 4.16
500 504 1.529744 TTTCTTGGGGAGGAGGTGTT 58.470 50.000 0.00 0.00 0.00 3.32
501 505 1.529744 TTCTTGGGGAGGAGGTGTTT 58.470 50.000 0.00 0.00 0.00 2.83
502 506 1.064825 TCTTGGGGAGGAGGTGTTTC 58.935 55.000 0.00 0.00 0.00 2.78
503 507 1.068121 CTTGGGGAGGAGGTGTTTCT 58.932 55.000 0.00 0.00 0.00 2.52
504 508 2.158066 TCTTGGGGAGGAGGTGTTTCTA 60.158 50.000 0.00 0.00 0.00 2.10
505 509 1.952621 TGGGGAGGAGGTGTTTCTAG 58.047 55.000 0.00 0.00 0.00 2.43
506 510 0.542333 GGGGAGGAGGTGTTTCTAGC 59.458 60.000 0.00 0.00 0.00 3.42
507 511 0.542333 GGGAGGAGGTGTTTCTAGCC 59.458 60.000 0.00 0.00 0.00 3.93
508 512 1.276622 GGAGGAGGTGTTTCTAGCCA 58.723 55.000 0.00 0.00 0.00 4.75
509 513 1.628846 GGAGGAGGTGTTTCTAGCCAA 59.371 52.381 0.00 0.00 0.00 4.52
510 514 2.039879 GGAGGAGGTGTTTCTAGCCAAA 59.960 50.000 0.00 0.00 0.00 3.28
511 515 3.075148 GAGGAGGTGTTTCTAGCCAAAC 58.925 50.000 1.09 1.09 36.87 2.93
512 516 2.160205 GGAGGTGTTTCTAGCCAAACC 58.840 52.381 4.98 0.00 35.69 3.27
513 517 2.160205 GAGGTGTTTCTAGCCAAACCC 58.840 52.381 4.98 5.85 35.69 4.11
514 518 1.497286 AGGTGTTTCTAGCCAAACCCA 59.503 47.619 12.75 0.00 35.69 4.51
515 519 2.110011 AGGTGTTTCTAGCCAAACCCAT 59.890 45.455 12.75 0.00 35.69 4.00
516 520 3.332485 AGGTGTTTCTAGCCAAACCCATA 59.668 43.478 12.75 0.00 35.69 2.74
517 521 3.442625 GGTGTTTCTAGCCAAACCCATAC 59.557 47.826 4.98 0.00 35.69 2.39
518 522 3.126343 GTGTTTCTAGCCAAACCCATACG 59.874 47.826 4.98 0.00 35.69 3.06
519 523 2.032680 TTCTAGCCAAACCCATACGC 57.967 50.000 0.00 0.00 0.00 4.42
520 524 1.200519 TCTAGCCAAACCCATACGCT 58.799 50.000 0.00 0.00 0.00 5.07
521 525 1.557832 TCTAGCCAAACCCATACGCTT 59.442 47.619 0.00 0.00 0.00 4.68
534 538 5.304614 ACCCATACGCTTATGTCTACTCATT 59.695 40.000 9.16 0.00 34.27 2.57
535 539 6.183360 ACCCATACGCTTATGTCTACTCATTT 60.183 38.462 9.16 0.00 34.27 2.32
536 540 6.366332 CCCATACGCTTATGTCTACTCATTTC 59.634 42.308 9.16 0.00 34.27 2.17
537 541 6.923508 CCATACGCTTATGTCTACTCATTTCA 59.076 38.462 9.16 0.00 34.27 2.69
540 544 7.470289 ACGCTTATGTCTACTCATTTCATTC 57.530 36.000 0.00 0.00 0.00 2.67
554 558 7.921214 ACTCATTTCATTCATTCATGCTTGATC 59.079 33.333 2.75 0.00 0.00 2.92
556 560 9.127277 TCATTTCATTCATTCATGCTTGATCTA 57.873 29.630 2.75 0.00 0.00 1.98
558 562 9.967346 ATTTCATTCATTCATGCTTGATCTAAG 57.033 29.630 2.75 0.00 39.49 2.18
625 629 7.696872 CACAAGTGCTCTATCAAAATCAAGATG 59.303 37.037 0.00 0.00 0.00 2.90
687 691 3.426963 GCGGCCATTTCGATTCAAACTAA 60.427 43.478 2.24 0.00 0.00 2.24
688 692 4.095610 CGGCCATTTCGATTCAAACTAAC 58.904 43.478 2.24 0.00 0.00 2.34
689 693 4.142687 CGGCCATTTCGATTCAAACTAACT 60.143 41.667 2.24 0.00 0.00 2.24
690 694 5.064198 CGGCCATTTCGATTCAAACTAACTA 59.936 40.000 2.24 0.00 0.00 2.24
691 695 6.487103 GGCCATTTCGATTCAAACTAACTAG 58.513 40.000 0.00 0.00 0.00 2.57
692 696 6.458342 GGCCATTTCGATTCAAACTAACTAGG 60.458 42.308 0.00 0.00 0.00 3.02
716 720 6.090783 GCTGTGCTTTACCTTGGTTATTAAC 58.909 40.000 0.00 0.00 0.00 2.01
770 774 1.140804 AGCAACGCACAAAACCACC 59.859 52.632 0.00 0.00 0.00 4.61
771 775 1.153745 GCAACGCACAAAACCACCA 60.154 52.632 0.00 0.00 0.00 4.17
772 776 1.417577 GCAACGCACAAAACCACCAC 61.418 55.000 0.00 0.00 0.00 4.16
773 777 0.804156 CAACGCACAAAACCACCACC 60.804 55.000 0.00 0.00 0.00 4.61
774 778 1.251527 AACGCACAAAACCACCACCA 61.252 50.000 0.00 0.00 0.00 4.17
775 779 1.065600 CGCACAAAACCACCACCAG 59.934 57.895 0.00 0.00 0.00 4.00
776 780 1.227234 GCACAAAACCACCACCAGC 60.227 57.895 0.00 0.00 0.00 4.85
777 781 1.954362 GCACAAAACCACCACCAGCA 61.954 55.000 0.00 0.00 0.00 4.41
778 782 0.534412 CACAAAACCACCACCAGCAA 59.466 50.000 0.00 0.00 0.00 3.91
828 839 2.106332 CTCCCGTCCCCGAATTCG 59.894 66.667 20.92 20.92 35.63 3.34
842 853 1.272554 AATTCGTCCCCTCCCAGTCC 61.273 60.000 0.00 0.00 0.00 3.85
843 854 3.918328 TTCGTCCCCTCCCAGTCCC 62.918 68.421 0.00 0.00 0.00 4.46
844 855 4.715130 CGTCCCCTCCCAGTCCCA 62.715 72.222 0.00 0.00 0.00 4.37
845 856 2.689034 GTCCCCTCCCAGTCCCAG 60.689 72.222 0.00 0.00 0.00 4.45
846 857 4.024984 TCCCCTCCCAGTCCCAGG 62.025 72.222 0.00 0.00 0.00 4.45
955 966 2.902705 TCTCTCTCTCTCTACTCGCC 57.097 55.000 0.00 0.00 0.00 5.54
956 967 1.414919 TCTCTCTCTCTCTACTCGCCC 59.585 57.143 0.00 0.00 0.00 6.13
1534 1559 2.287608 GGTACACAAGTTGCCTTCTTGC 60.288 50.000 1.81 0.00 43.97 4.01
1610 1636 2.171209 AAATTGGGGCTTCTTGCGGC 62.171 55.000 0.00 0.00 44.05 6.53
1820 1862 4.510340 AGTTCGATTAGTTTGCTTTGTCGT 59.490 37.500 0.00 0.00 0.00 4.34
1853 1895 9.725019 TGTTGTAGAATCAAGACTTCACATATT 57.275 29.630 0.00 0.00 0.00 1.28
1856 1898 9.371136 TGTAGAATCAAGACTTCACATATTGTC 57.629 33.333 0.00 0.00 0.00 3.18
1923 1965 2.996621 GCACTTGAGTTATCTGCGTCTT 59.003 45.455 0.00 0.00 0.00 3.01
1957 2000 5.507482 GGTCTCTTTGTTTTTGCTAAGACCC 60.507 44.000 6.91 0.00 43.65 4.46
2012 2055 6.636705 CATGGTGATTGATTGGAAATGTCTT 58.363 36.000 0.00 0.00 0.00 3.01
2077 2120 7.327275 CCTATAGATACGTCTGAAGAACATTGC 59.673 40.741 0.00 0.00 35.87 3.56
2129 2172 7.200434 AGCCTAATATTTCTCCTCTGTTCAA 57.800 36.000 0.00 0.00 0.00 2.69
2170 2213 2.030274 ACCAAAAGCGCAGTATTGAACC 60.030 45.455 11.47 0.00 0.00 3.62
2171 2214 2.030363 CCAAAAGCGCAGTATTGAACCA 60.030 45.455 11.47 0.00 0.00 3.67
2172 2215 3.367292 CCAAAAGCGCAGTATTGAACCAT 60.367 43.478 11.47 0.00 0.00 3.55
2173 2216 3.492421 AAAGCGCAGTATTGAACCATG 57.508 42.857 11.47 0.00 0.00 3.66
2174 2217 1.382522 AGCGCAGTATTGAACCATGG 58.617 50.000 11.19 11.19 0.00 3.66
2175 2218 1.065491 AGCGCAGTATTGAACCATGGA 60.065 47.619 21.47 0.00 0.00 3.41
2176 2219 1.331756 GCGCAGTATTGAACCATGGAG 59.668 52.381 21.47 0.00 0.00 3.86
2177 2220 2.632377 CGCAGTATTGAACCATGGAGT 58.368 47.619 21.47 5.42 0.00 3.85
2178 2221 3.009723 CGCAGTATTGAACCATGGAGTT 58.990 45.455 21.47 2.22 0.00 3.01
2179 2222 3.181507 CGCAGTATTGAACCATGGAGTTG 60.182 47.826 21.47 6.11 0.00 3.16
2239 2282 6.929049 CACTCTTAACTCACTGTCATACCAAA 59.071 38.462 0.00 0.00 0.00 3.28
2359 2402 6.237915 GCCAGTCTTCAAATTTGTTGTTTCTG 60.238 38.462 17.47 16.48 0.00 3.02
2406 2449 6.844696 ATAATAAGCGTACTGAACATGTGG 57.155 37.500 0.00 0.00 0.00 4.17
2442 2485 4.374399 ACTGGGTAAGTTCAACGTTAGTG 58.626 43.478 0.00 0.00 34.57 2.74
2673 2718 7.595819 ACCTCTGGAATTACTAGATCTTGAG 57.404 40.000 11.29 0.82 35.64 3.02
2856 2905 9.123709 TCATTTGTTTCTTCAAATATTACACGC 57.876 29.630 4.69 0.00 43.37 5.34
2904 2953 6.072728 TGCATGTTTTGTTATGTCCTGTAGAC 60.073 38.462 0.00 0.00 46.51 2.59
3633 3688 8.593945 TGTTTAATGGCTCAAATAAGGATTCT 57.406 30.769 0.00 0.00 0.00 2.40
3648 3703 3.975312 AGGATTCTGATTCCAGCTCAGAT 59.025 43.478 18.05 0.00 46.26 2.90
3843 3898 2.773993 TTCTTGACCACGATTACCCC 57.226 50.000 0.00 0.00 0.00 4.95
3989 4052 3.825328 CTTGCCTAGCCCAGAATTATGT 58.175 45.455 0.00 0.00 0.00 2.29
4588 4663 2.163818 TTTCCACTACACAAGCCTCG 57.836 50.000 0.00 0.00 0.00 4.63
4616 4691 6.064717 AGAGTTTAAGTGAATTGAAGCCACT 58.935 36.000 0.00 0.00 42.34 4.00
4618 4693 7.719633 AGAGTTTAAGTGAATTGAAGCCACTTA 59.280 33.333 14.21 14.21 45.86 2.24
4624 4699 3.126858 TGAATTGAAGCCACTTATCGTGC 59.873 43.478 0.00 0.00 42.42 5.34
4706 4783 8.394121 CAGTGAATTATTCTGCTAGTCCTTTTC 58.606 37.037 6.50 0.00 0.00 2.29
4830 4907 3.099905 CTCCACTCTGTCCTTGGACATA 58.900 50.000 21.09 13.98 34.35 2.29
5597 5677 7.739498 ACAAGTTTAATATGGTCTCACGTTT 57.261 32.000 0.00 0.00 0.00 3.60
5599 5679 7.442969 ACAAGTTTAATATGGTCTCACGTTTGA 59.557 33.333 0.00 0.00 0.00 2.69
5622 5702 6.762187 TGAAATTCTCATGTGCACAAATGTTT 59.238 30.769 25.72 18.40 0.00 2.83
5623 5703 7.924947 TGAAATTCTCATGTGCACAAATGTTTA 59.075 29.630 25.72 6.76 0.00 2.01
5624 5704 7.642071 AATTCTCATGTGCACAAATGTTTAC 57.358 32.000 25.72 0.00 0.00 2.01
5625 5705 6.389830 TTCTCATGTGCACAAATGTTTACT 57.610 33.333 25.72 0.00 0.00 2.24
5626 5706 5.761003 TCTCATGTGCACAAATGTTTACTG 58.239 37.500 25.72 14.08 0.00 2.74
5627 5707 5.299028 TCTCATGTGCACAAATGTTTACTGT 59.701 36.000 25.72 0.00 0.00 3.55
5628 5708 6.484977 TCTCATGTGCACAAATGTTTACTGTA 59.515 34.615 25.72 4.56 0.00 2.74
5629 5709 6.434596 TCATGTGCACAAATGTTTACTGTAC 58.565 36.000 25.72 0.00 0.00 2.90
5630 5710 4.838681 TGTGCACAAATGTTTACTGTACG 58.161 39.130 19.28 0.00 0.00 3.67
5631 5711 3.662186 GTGCACAAATGTTTACTGTACGC 59.338 43.478 13.17 0.00 0.00 4.42
5632 5712 3.312697 TGCACAAATGTTTACTGTACGCA 59.687 39.130 0.00 0.00 0.00 5.24
5633 5713 4.201920 TGCACAAATGTTTACTGTACGCAA 60.202 37.500 0.00 0.00 0.00 4.85
5634 5714 4.735822 GCACAAATGTTTACTGTACGCAAA 59.264 37.500 0.00 0.00 0.00 3.68
5635 5715 5.230306 GCACAAATGTTTACTGTACGCAAAA 59.770 36.000 0.00 0.00 0.00 2.44
5636 5716 6.623633 CACAAATGTTTACTGTACGCAAAAC 58.376 36.000 8.86 8.86 33.46 2.43
5637 5717 6.470877 CACAAATGTTTACTGTACGCAAAACT 59.529 34.615 14.17 2.72 33.89 2.66
5638 5718 7.640630 CACAAATGTTTACTGTACGCAAAACTA 59.359 33.333 14.17 5.49 33.89 2.24
5639 5719 8.347035 ACAAATGTTTACTGTACGCAAAACTAT 58.653 29.630 14.17 6.91 33.89 2.12
5640 5720 8.626576 CAAATGTTTACTGTACGCAAAACTATG 58.373 33.333 14.17 8.89 33.89 2.23
5641 5721 7.661127 ATGTTTACTGTACGCAAAACTATGA 57.339 32.000 14.17 0.41 33.89 2.15
5642 5722 6.879962 TGTTTACTGTACGCAAAACTATGAC 58.120 36.000 14.17 0.00 33.89 3.06
5643 5723 5.750484 TTACTGTACGCAAAACTATGACG 57.250 39.130 0.00 0.00 0.00 4.35
5644 5724 3.645884 ACTGTACGCAAAACTATGACGT 58.354 40.909 0.00 0.00 37.08 4.34
5645 5725 4.053295 ACTGTACGCAAAACTATGACGTT 58.947 39.130 0.00 0.00 35.66 3.99
5646 5726 4.149396 ACTGTACGCAAAACTATGACGTTC 59.851 41.667 0.00 0.00 35.66 3.95
5647 5727 4.049869 TGTACGCAAAACTATGACGTTCA 58.950 39.130 0.00 0.00 35.66 3.18
5648 5728 3.515071 ACGCAAAACTATGACGTTCAC 57.485 42.857 0.00 0.00 32.10 3.18
5649 5729 2.222445 ACGCAAAACTATGACGTTCACC 59.778 45.455 0.00 0.00 32.10 4.02
5650 5730 2.478894 CGCAAAACTATGACGTTCACCT 59.521 45.455 0.00 0.00 0.00 4.00
5651 5731 3.059188 CGCAAAACTATGACGTTCACCTT 60.059 43.478 0.00 0.00 0.00 3.50
5652 5732 4.464112 GCAAAACTATGACGTTCACCTTC 58.536 43.478 0.00 0.00 0.00 3.46
5653 5733 4.213482 GCAAAACTATGACGTTCACCTTCT 59.787 41.667 0.00 0.00 0.00 2.85
5654 5734 5.407387 GCAAAACTATGACGTTCACCTTCTA 59.593 40.000 0.00 0.00 0.00 2.10
5655 5735 6.401153 GCAAAACTATGACGTTCACCTTCTAG 60.401 42.308 0.00 0.00 0.00 2.43
5656 5736 5.979288 AACTATGACGTTCACCTTCTAGT 57.021 39.130 0.00 0.00 0.00 2.57
5657 5737 5.564048 ACTATGACGTTCACCTTCTAGTC 57.436 43.478 0.00 0.00 0.00 2.59
5658 5738 5.254901 ACTATGACGTTCACCTTCTAGTCT 58.745 41.667 0.00 0.00 0.00 3.24
5659 5739 4.705337 ATGACGTTCACCTTCTAGTCTC 57.295 45.455 0.00 0.00 0.00 3.36
5660 5740 3.483421 TGACGTTCACCTTCTAGTCTCA 58.517 45.455 0.00 0.00 0.00 3.27
5661 5741 4.079970 TGACGTTCACCTTCTAGTCTCAT 58.920 43.478 0.00 0.00 0.00 2.90
5662 5742 5.250982 TGACGTTCACCTTCTAGTCTCATA 58.749 41.667 0.00 0.00 0.00 2.15
5663 5743 5.886474 TGACGTTCACCTTCTAGTCTCATAT 59.114 40.000 0.00 0.00 0.00 1.78
5664 5744 7.052248 TGACGTTCACCTTCTAGTCTCATATA 58.948 38.462 0.00 0.00 0.00 0.86
5665 5745 7.555195 TGACGTTCACCTTCTAGTCTCATATAA 59.445 37.037 0.00 0.00 0.00 0.98
5666 5746 8.289939 ACGTTCACCTTCTAGTCTCATATAAA 57.710 34.615 0.00 0.00 0.00 1.40
5667 5747 8.407064 ACGTTCACCTTCTAGTCTCATATAAAG 58.593 37.037 0.00 0.00 0.00 1.85
5708 5796 8.246430 TCCTCGATACAAGTTTAATATGGTCT 57.754 34.615 0.00 0.00 0.00 3.85
5709 5797 8.358148 TCCTCGATACAAGTTTAATATGGTCTC 58.642 37.037 0.00 0.00 0.00 3.36
5710 5798 8.141909 CCTCGATACAAGTTTAATATGGTCTCA 58.858 37.037 0.00 0.00 0.00 3.27
5711 5799 9.698309 CTCGATACAAGTTTAATATGGTCTCAT 57.302 33.333 0.00 0.00 37.40 2.90
5712 5800 9.476202 TCGATACAAGTTTAATATGGTCTCATG 57.524 33.333 0.00 0.00 34.96 3.07
5713 5801 9.261180 CGATACAAGTTTAATATGGTCTCATGT 57.739 33.333 0.00 0.00 34.96 3.21
5897 5985 3.700539 TGATGTTGGCCTATCACAAATGG 59.299 43.478 3.32 0.00 0.00 3.16
6276 6364 0.460284 GACGATCGTGGGATTGCTGT 60.460 55.000 28.12 0.00 37.54 4.40
6483 6571 9.083422 TGAAATAGGTTTGTCCATTTGTGAATA 57.917 29.630 0.00 0.00 39.02 1.75
6579 6677 7.722285 ACCATTTATACCACACAGTAACTGTTT 59.278 33.333 0.00 0.00 42.59 2.83
6894 7003 0.178767 TCCATCCAGAGCGTGAATGG 59.821 55.000 1.48 1.48 35.30 3.16
6937 7046 4.196971 CCAATTGTGATCAGCTCAGATGA 58.803 43.478 0.00 0.00 33.51 2.92
6966 7075 8.927675 TCTAAGCTTATTGACCACCTTTAAAA 57.072 30.769 6.64 0.00 0.00 1.52
7495 7604 3.847671 TCATGTGGTGGACTTAACACA 57.152 42.857 0.00 0.00 46.44 3.72
7588 7697 3.604875 TTACAAGACCTCACCGATTCC 57.395 47.619 0.00 0.00 0.00 3.01
7780 7890 3.601443 TCTGCTTCAGCTAGTTCCTTC 57.399 47.619 0.00 0.00 42.66 3.46
8009 8119 8.488308 ACTATATCACCGGTAATTCTAACCTT 57.512 34.615 6.87 0.00 34.66 3.50
8010 8120 9.592196 ACTATATCACCGGTAATTCTAACCTTA 57.408 33.333 6.87 0.00 34.66 2.69
8015 8125 8.866970 TCACCGGTAATTCTAACCTTAATTTT 57.133 30.769 6.87 0.00 34.66 1.82
8016 8126 9.299465 TCACCGGTAATTCTAACCTTAATTTTT 57.701 29.630 6.87 0.00 34.66 1.94
8041 8151 7.944729 ATCTACATTGAAACATGGTAAAGCT 57.055 32.000 0.00 0.00 0.00 3.74
8043 8153 8.492673 TCTACATTGAAACATGGTAAAGCTAG 57.507 34.615 0.00 0.00 0.00 3.42
8044 8154 8.318412 TCTACATTGAAACATGGTAAAGCTAGA 58.682 33.333 0.00 0.00 0.00 2.43
8045 8155 7.944729 ACATTGAAACATGGTAAAGCTAGAT 57.055 32.000 0.00 0.00 0.00 1.98
8046 8156 7.765307 ACATTGAAACATGGTAAAGCTAGATG 58.235 34.615 0.00 0.00 0.00 2.90
8047 8157 7.394359 ACATTGAAACATGGTAAAGCTAGATGT 59.606 33.333 0.00 0.00 0.00 3.06
8048 8158 6.741992 TGAAACATGGTAAAGCTAGATGTG 57.258 37.500 0.00 0.00 0.00 3.21
8049 8159 6.237901 TGAAACATGGTAAAGCTAGATGTGT 58.762 36.000 0.00 0.00 0.00 3.72
8050 8160 7.390823 TGAAACATGGTAAAGCTAGATGTGTA 58.609 34.615 0.00 0.00 0.00 2.90
8051 8161 8.046708 TGAAACATGGTAAAGCTAGATGTGTAT 58.953 33.333 0.00 0.00 0.00 2.29
8052 8162 8.807948 AAACATGGTAAAGCTAGATGTGTATT 57.192 30.769 0.00 0.00 0.00 1.89
8053 8163 9.899661 AAACATGGTAAAGCTAGATGTGTATTA 57.100 29.630 0.00 0.00 0.00 0.98
8054 8164 8.888579 ACATGGTAAAGCTAGATGTGTATTAC 57.111 34.615 0.00 0.00 0.00 1.89
8055 8165 8.705594 ACATGGTAAAGCTAGATGTGTATTACT 58.294 33.333 0.00 0.00 0.00 2.24
8063 8173 8.053026 AGCTAGATGTGTATTACTATTACCCG 57.947 38.462 0.00 0.00 0.00 5.28
8064 8174 6.750963 GCTAGATGTGTATTACTATTACCCGC 59.249 42.308 0.00 0.00 0.00 6.13
8065 8175 6.912951 AGATGTGTATTACTATTACCCGCT 57.087 37.500 0.00 0.00 0.00 5.52
8066 8176 6.921914 AGATGTGTATTACTATTACCCGCTC 58.078 40.000 0.00 0.00 0.00 5.03
8067 8177 6.720288 AGATGTGTATTACTATTACCCGCTCT 59.280 38.462 0.00 0.00 0.00 4.09
8068 8178 6.720112 TGTGTATTACTATTACCCGCTCTT 57.280 37.500 0.00 0.00 0.00 2.85
8069 8179 6.742109 TGTGTATTACTATTACCCGCTCTTC 58.258 40.000 0.00 0.00 0.00 2.87
8070 8180 5.855395 GTGTATTACTATTACCCGCTCTTCG 59.145 44.000 0.00 0.00 38.08 3.79
8071 8181 5.532406 TGTATTACTATTACCCGCTCTTCGT 59.468 40.000 0.00 0.00 36.19 3.85
8072 8182 4.989279 TTACTATTACCCGCTCTTCGTT 57.011 40.909 0.00 0.00 36.19 3.85
8073 8183 3.881937 ACTATTACCCGCTCTTCGTTT 57.118 42.857 0.00 0.00 36.19 3.60
8074 8184 3.778618 ACTATTACCCGCTCTTCGTTTC 58.221 45.455 0.00 0.00 36.19 2.78
8075 8185 2.019948 ATTACCCGCTCTTCGTTTCC 57.980 50.000 0.00 0.00 36.19 3.13
8076 8186 0.680618 TTACCCGCTCTTCGTTTCCA 59.319 50.000 0.00 0.00 36.19 3.53
8077 8187 0.680618 TACCCGCTCTTCGTTTCCAA 59.319 50.000 0.00 0.00 36.19 3.53
8078 8188 0.179040 ACCCGCTCTTCGTTTCCAAA 60.179 50.000 0.00 0.00 36.19 3.28
8079 8189 0.517316 CCCGCTCTTCGTTTCCAAAG 59.483 55.000 0.00 0.00 36.19 2.77
8080 8190 1.226746 CCGCTCTTCGTTTCCAAAGT 58.773 50.000 0.00 0.00 36.19 2.66
8081 8191 2.409975 CCGCTCTTCGTTTCCAAAGTA 58.590 47.619 0.00 0.00 36.19 2.24
8082 8192 2.157085 CCGCTCTTCGTTTCCAAAGTAC 59.843 50.000 0.00 0.00 36.19 2.73
8083 8193 2.157085 CGCTCTTCGTTTCCAAAGTACC 59.843 50.000 0.00 0.00 0.00 3.34
8084 8194 3.400255 GCTCTTCGTTTCCAAAGTACCT 58.600 45.455 0.00 0.00 0.00 3.08
8085 8195 3.813724 GCTCTTCGTTTCCAAAGTACCTT 59.186 43.478 0.00 0.00 0.00 3.50
8086 8196 4.083961 GCTCTTCGTTTCCAAAGTACCTTC 60.084 45.833 0.00 0.00 0.00 3.46
8087 8197 5.286267 TCTTCGTTTCCAAAGTACCTTCT 57.714 39.130 0.00 0.00 0.00 2.85
8088 8198 5.054477 TCTTCGTTTCCAAAGTACCTTCTG 58.946 41.667 0.00 0.00 0.00 3.02
8089 8199 4.411256 TCGTTTCCAAAGTACCTTCTGT 57.589 40.909 0.00 0.00 0.00 3.41
8090 8200 4.773013 TCGTTTCCAAAGTACCTTCTGTT 58.227 39.130 0.00 0.00 0.00 3.16
8091 8201 5.187687 TCGTTTCCAAAGTACCTTCTGTTT 58.812 37.500 0.00 0.00 0.00 2.83
8092 8202 5.648960 TCGTTTCCAAAGTACCTTCTGTTTT 59.351 36.000 0.00 0.00 0.00 2.43
8093 8203 5.741982 CGTTTCCAAAGTACCTTCTGTTTTG 59.258 40.000 0.00 0.00 0.00 2.44
8094 8204 4.911514 TCCAAAGTACCTTCTGTTTTGC 57.088 40.909 0.00 0.00 0.00 3.68
8095 8205 4.532834 TCCAAAGTACCTTCTGTTTTGCT 58.467 39.130 0.00 0.00 0.00 3.91
8096 8206 4.338118 TCCAAAGTACCTTCTGTTTTGCTG 59.662 41.667 0.00 0.00 0.00 4.41
8097 8207 3.990318 AAGTACCTTCTGTTTTGCTGC 57.010 42.857 0.00 0.00 0.00 5.25
8098 8208 2.930950 AGTACCTTCTGTTTTGCTGCA 58.069 42.857 0.00 0.00 0.00 4.41
8099 8209 3.490348 AGTACCTTCTGTTTTGCTGCAT 58.510 40.909 1.84 0.00 0.00 3.96
8100 8210 4.651778 AGTACCTTCTGTTTTGCTGCATA 58.348 39.130 1.84 0.00 0.00 3.14
8101 8211 5.256474 AGTACCTTCTGTTTTGCTGCATAT 58.744 37.500 1.84 0.00 0.00 1.78
8262 8580 2.545106 GACCTTTGTTGCAAATGCCTTG 59.455 45.455 0.00 0.00 41.18 3.61
8263 8581 2.093021 ACCTTTGTTGCAAATGCCTTGT 60.093 40.909 0.00 0.00 41.18 3.16
8264 8582 3.133721 ACCTTTGTTGCAAATGCCTTGTA 59.866 39.130 0.00 0.00 41.18 2.41
8265 8583 4.202346 ACCTTTGTTGCAAATGCCTTGTAT 60.202 37.500 0.00 0.00 41.18 2.29
8266 8584 4.152759 CCTTTGTTGCAAATGCCTTGTATG 59.847 41.667 0.00 0.00 41.18 2.39
8267 8585 4.597404 TTGTTGCAAATGCCTTGTATGA 57.403 36.364 0.00 0.00 41.18 2.15
8268 8586 4.804868 TGTTGCAAATGCCTTGTATGAT 57.195 36.364 0.00 0.00 41.18 2.45
8269 8587 4.496360 TGTTGCAAATGCCTTGTATGATG 58.504 39.130 0.00 0.00 41.18 3.07
8270 8588 4.021280 TGTTGCAAATGCCTTGTATGATGT 60.021 37.500 0.00 0.00 41.18 3.06
8271 8589 4.804868 TGCAAATGCCTTGTATGATGTT 57.195 36.364 2.46 0.00 41.18 2.71
8272 8590 4.746729 TGCAAATGCCTTGTATGATGTTC 58.253 39.130 2.46 0.00 41.18 3.18
8273 8591 4.463539 TGCAAATGCCTTGTATGATGTTCT 59.536 37.500 2.46 0.00 41.18 3.01
8274 8592 4.802039 GCAAATGCCTTGTATGATGTTCTG 59.198 41.667 0.00 0.00 37.36 3.02
8275 8593 5.622914 GCAAATGCCTTGTATGATGTTCTGT 60.623 40.000 0.00 0.00 37.36 3.41
8276 8594 6.404623 GCAAATGCCTTGTATGATGTTCTGTA 60.405 38.462 0.00 0.00 37.36 2.74
8277 8595 7.682741 GCAAATGCCTTGTATGATGTTCTGTAT 60.683 37.037 0.00 0.00 37.36 2.29
8278 8596 8.839343 CAAATGCCTTGTATGATGTTCTGTATA 58.161 33.333 0.00 0.00 0.00 1.47
8279 8597 8.613060 AATGCCTTGTATGATGTTCTGTATAG 57.387 34.615 0.00 0.00 0.00 1.31
8280 8598 7.124573 TGCCTTGTATGATGTTCTGTATAGT 57.875 36.000 0.00 0.00 0.00 2.12
8281 8599 8.245195 TGCCTTGTATGATGTTCTGTATAGTA 57.755 34.615 0.00 0.00 0.00 1.82
8282 8600 8.141909 TGCCTTGTATGATGTTCTGTATAGTAC 58.858 37.037 0.00 0.00 0.00 2.73
8283 8601 8.361139 GCCTTGTATGATGTTCTGTATAGTACT 58.639 37.037 0.00 0.00 0.00 2.73
8298 8616 9.218440 CTGTATAGTACTTTCTACCTAGTAGCC 57.782 40.741 0.00 0.00 36.22 3.93
8519 8845 4.142622 ACGGTGAGTTGATTGCATAATGTG 60.143 41.667 0.00 0.00 0.00 3.21
8520 8846 4.142622 CGGTGAGTTGATTGCATAATGTGT 60.143 41.667 0.00 0.00 0.00 3.72
8521 8847 5.335127 GGTGAGTTGATTGCATAATGTGTC 58.665 41.667 0.00 0.00 0.00 3.67
8617 8955 3.119137 ACAACTTGAAAGTTCTTGTGCCC 60.119 43.478 5.46 0.00 45.65 5.36
8760 9098 8.831550 TGCGTATAGAGATAGAGCATGTAATAG 58.168 37.037 0.00 0.00 31.27 1.73
8916 9254 3.308014 GACTGGCCTCTTCGCAGCT 62.308 63.158 3.32 0.00 0.00 4.24
8948 9286 0.612453 AGTGTTCCTCCTCGTCTCCC 60.612 60.000 0.00 0.00 0.00 4.30
9245 9588 1.372872 GTTGCCATGCCGTTTGGTC 60.373 57.895 0.00 0.00 36.57 4.02
9262 9605 0.394565 GTCTGTGCCTCCTGTGTCTT 59.605 55.000 0.00 0.00 0.00 3.01
9301 9647 4.460263 TGCTTGATACTGTTCCAAACACT 58.540 39.130 0.00 0.00 36.25 3.55
9504 9854 5.445964 AGTGACACATTGAAAAGGGTAGTT 58.554 37.500 8.59 0.00 0.00 2.24
9607 10752 0.107831 TTCTCTGTTCGGTTGGGTGG 59.892 55.000 0.00 0.00 0.00 4.61
9613 10758 0.179012 GTTCGGTTGGGTGGGAAAGA 60.179 55.000 0.00 0.00 0.00 2.52
9627 10772 1.066787 GGAAAGAACGAGGTGGAGGAG 60.067 57.143 0.00 0.00 0.00 3.69
9629 10774 1.551452 AAGAACGAGGTGGAGGAGAG 58.449 55.000 0.00 0.00 0.00 3.20
9652 10798 1.004277 TGGCGTTAGAGGAAATTGGCT 59.996 47.619 0.00 0.00 0.00 4.75
9659 10805 2.039462 GGAAATTGGCTGGGGGCT 59.961 61.111 0.00 0.00 41.46 5.19
9695 10841 2.889045 CGTAATAACGGGGAGGAGATGA 59.111 50.000 0.00 0.00 45.50 2.92
9702 10848 3.436243 ACGGGGAGGAGATGATCTATTC 58.564 50.000 0.00 0.00 0.00 1.75
9731 10877 1.095807 GGATAAGTGGCAACTCGGGC 61.096 60.000 0.00 0.00 34.77 6.13
9753 10899 4.826183 GCATCTAGGGAATCAGCAAATTCT 59.174 41.667 9.95 0.00 36.19 2.40
9802 10948 5.600696 AGCACAATTTCAGAACCGATTTTT 58.399 33.333 0.00 0.00 0.00 1.94
9816 10964 9.010029 AGAACCGATTTTTGAAAGCTAAGATAA 57.990 29.630 0.00 0.00 0.00 1.75
9854 11003 5.010922 TGTTTGAGATTCTGTTTTGGATGGG 59.989 40.000 0.00 0.00 0.00 4.00
9855 11004 4.387026 TGAGATTCTGTTTTGGATGGGT 57.613 40.909 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.598064 ACTGTCTACTACAACAAGTTTTGCTT 59.402 34.615 0.00 0.00 37.74 3.91
28 29 6.113411 ACTGTCTACTACAACAAGTTTTGCT 58.887 36.000 0.00 0.00 37.74 3.91
59 60 6.040955 TCCTATGAGATCTTAGCACGACAATT 59.959 38.462 0.00 0.00 0.00 2.32
60 61 5.536538 TCCTATGAGATCTTAGCACGACAAT 59.463 40.000 0.00 0.00 0.00 2.71
61 62 4.887655 TCCTATGAGATCTTAGCACGACAA 59.112 41.667 0.00 0.00 0.00 3.18
62 63 4.276183 GTCCTATGAGATCTTAGCACGACA 59.724 45.833 0.00 0.00 0.00 4.35
96 98 3.081061 TCATCAGCGGCAGTTGTTATTT 58.919 40.909 1.45 0.00 0.00 1.40
99 101 2.076100 CTTCATCAGCGGCAGTTGTTA 58.924 47.619 1.45 0.00 0.00 2.41
106 108 0.179100 GCTACTCTTCATCAGCGGCA 60.179 55.000 1.45 0.00 0.00 5.69
162 164 6.699366 TCGGATCTAGTCGTAGTTCATCTAT 58.301 40.000 0.00 0.00 29.57 1.98
167 169 2.871022 GCTCGGATCTAGTCGTAGTTCA 59.129 50.000 0.00 0.00 29.57 3.18
210 212 0.541998 TGTGAGGGTGTGTCTCCGAT 60.542 55.000 0.00 0.00 0.00 4.18
211 213 1.152631 TGTGAGGGTGTGTCTCCGA 60.153 57.895 0.00 0.00 0.00 4.55
238 240 2.223203 CGGTGGTGTGTCTAGTATCGTC 60.223 54.545 0.00 0.00 0.00 4.20
244 246 1.275291 CATTCCGGTGGTGTGTCTAGT 59.725 52.381 0.00 0.00 0.00 2.57
263 265 3.012959 AGATTCTCCTTGTCTAGTCCCCA 59.987 47.826 0.00 0.00 0.00 4.96
273 275 9.393512 CTGAAGATGAAATAAGATTCTCCTTGT 57.606 33.333 0.00 0.00 0.00 3.16
275 277 7.997803 CCCTGAAGATGAAATAAGATTCTCCTT 59.002 37.037 0.00 0.00 0.00 3.36
276 278 7.349330 TCCCTGAAGATGAAATAAGATTCTCCT 59.651 37.037 0.00 0.00 0.00 3.69
283 285 4.443457 CGGCTCCCTGAAGATGAAATAAGA 60.443 45.833 0.00 0.00 0.00 2.10
290 292 2.903357 GCGGCTCCCTGAAGATGA 59.097 61.111 0.00 0.00 0.00 2.92
308 310 1.137825 CTCAGGAAGACGAGACGGC 59.862 63.158 0.00 0.00 33.59 5.68
309 311 1.137825 GCTCAGGAAGACGAGACGG 59.862 63.158 0.00 0.00 0.00 4.79
338 341 6.766467 AGATGTTTCTTCAACTTTCGTTAGGT 59.234 34.615 0.00 0.00 36.21 3.08
345 348 9.498307 TCGTTTTTAGATGTTTCTTCAACTTTC 57.502 29.630 0.00 0.00 36.21 2.62
408 411 1.928046 TGACCTTAGGGCCATGGCA 60.928 57.895 36.56 15.51 44.11 4.92
456 460 1.155155 GGGTTCCTTTGCTTCCCCA 59.845 57.895 0.00 0.00 32.66 4.96
464 468 5.473039 CAAGAAAAGCATAGGGTTCCTTTG 58.527 41.667 0.00 0.00 36.03 2.77
465 469 4.528206 CCAAGAAAAGCATAGGGTTCCTTT 59.472 41.667 0.00 0.00 34.61 3.11
466 470 4.089361 CCAAGAAAAGCATAGGGTTCCTT 58.911 43.478 0.00 0.00 34.61 3.36
467 471 3.564352 CCCAAGAAAAGCATAGGGTTCCT 60.564 47.826 0.00 0.00 37.71 3.36
468 472 2.760650 CCCAAGAAAAGCATAGGGTTCC 59.239 50.000 0.00 0.00 32.58 3.62
469 473 2.760650 CCCCAAGAAAAGCATAGGGTTC 59.239 50.000 0.00 0.00 34.44 3.62
470 474 2.381961 TCCCCAAGAAAAGCATAGGGTT 59.618 45.455 0.00 0.00 34.44 4.11
471 475 2.000048 TCCCCAAGAAAAGCATAGGGT 59.000 47.619 0.00 0.00 34.44 4.34
472 476 2.659428 CTCCCCAAGAAAAGCATAGGG 58.341 52.381 0.00 0.00 36.04 3.53
473 477 2.242196 TCCTCCCCAAGAAAAGCATAGG 59.758 50.000 0.00 0.00 0.00 2.57
474 478 3.549794 CTCCTCCCCAAGAAAAGCATAG 58.450 50.000 0.00 0.00 0.00 2.23
475 479 2.242196 CCTCCTCCCCAAGAAAAGCATA 59.758 50.000 0.00 0.00 0.00 3.14
476 480 1.006400 CCTCCTCCCCAAGAAAAGCAT 59.994 52.381 0.00 0.00 0.00 3.79
477 481 0.405585 CCTCCTCCCCAAGAAAAGCA 59.594 55.000 0.00 0.00 0.00 3.91
478 482 0.405973 ACCTCCTCCCCAAGAAAAGC 59.594 55.000 0.00 0.00 0.00 3.51
479 483 1.425448 ACACCTCCTCCCCAAGAAAAG 59.575 52.381 0.00 0.00 0.00 2.27
480 484 1.529744 ACACCTCCTCCCCAAGAAAA 58.470 50.000 0.00 0.00 0.00 2.29
481 485 1.529744 AACACCTCCTCCCCAAGAAA 58.470 50.000 0.00 0.00 0.00 2.52
482 486 1.423921 GAAACACCTCCTCCCCAAGAA 59.576 52.381 0.00 0.00 0.00 2.52
483 487 1.064825 GAAACACCTCCTCCCCAAGA 58.935 55.000 0.00 0.00 0.00 3.02
484 488 1.068121 AGAAACACCTCCTCCCCAAG 58.932 55.000 0.00 0.00 0.00 3.61
485 489 2.266279 CTAGAAACACCTCCTCCCCAA 58.734 52.381 0.00 0.00 0.00 4.12
486 490 1.952621 CTAGAAACACCTCCTCCCCA 58.047 55.000 0.00 0.00 0.00 4.96
487 491 0.542333 GCTAGAAACACCTCCTCCCC 59.458 60.000 0.00 0.00 0.00 4.81
488 492 0.542333 GGCTAGAAACACCTCCTCCC 59.458 60.000 0.00 0.00 0.00 4.30
489 493 1.276622 TGGCTAGAAACACCTCCTCC 58.723 55.000 0.00 0.00 0.00 4.30
490 494 3.075148 GTTTGGCTAGAAACACCTCCTC 58.925 50.000 0.00 0.00 36.11 3.71
491 495 2.224793 GGTTTGGCTAGAAACACCTCCT 60.225 50.000 8.75 0.00 37.53 3.69
492 496 2.160205 GGTTTGGCTAGAAACACCTCC 58.840 52.381 8.75 0.00 37.53 4.30
493 497 2.160205 GGGTTTGGCTAGAAACACCTC 58.840 52.381 8.75 0.00 37.53 3.85
494 498 1.497286 TGGGTTTGGCTAGAAACACCT 59.503 47.619 6.79 0.00 38.29 4.00
495 499 1.989706 TGGGTTTGGCTAGAAACACC 58.010 50.000 6.79 7.04 38.29 4.16
496 500 3.126343 CGTATGGGTTTGGCTAGAAACAC 59.874 47.826 8.75 6.01 39.33 3.32
497 501 3.340034 CGTATGGGTTTGGCTAGAAACA 58.660 45.455 8.75 0.00 37.53 2.83
498 502 2.096980 GCGTATGGGTTTGGCTAGAAAC 59.903 50.000 0.00 0.00 35.45 2.78
499 503 2.026636 AGCGTATGGGTTTGGCTAGAAA 60.027 45.455 0.00 0.00 31.03 2.52
500 504 1.557832 AGCGTATGGGTTTGGCTAGAA 59.442 47.619 0.00 0.00 31.03 2.10
501 505 1.200519 AGCGTATGGGTTTGGCTAGA 58.799 50.000 0.00 0.00 31.03 2.43
502 506 2.038387 AAGCGTATGGGTTTGGCTAG 57.962 50.000 0.00 0.00 30.69 3.42
503 507 3.118186 ACATAAGCGTATGGGTTTGGCTA 60.118 43.478 21.32 0.00 41.37 3.93
504 508 2.297701 CATAAGCGTATGGGTTTGGCT 58.702 47.619 11.38 0.00 37.56 4.75
505 509 2.021457 ACATAAGCGTATGGGTTTGGC 58.979 47.619 21.32 0.00 41.37 4.52
506 510 3.541632 AGACATAAGCGTATGGGTTTGG 58.458 45.455 21.32 0.00 41.37 3.28
507 511 5.357257 AGTAGACATAAGCGTATGGGTTTG 58.643 41.667 21.32 0.00 41.37 2.93
508 512 5.128171 TGAGTAGACATAAGCGTATGGGTTT 59.872 40.000 21.32 2.77 41.37 3.27
509 513 4.647853 TGAGTAGACATAAGCGTATGGGTT 59.352 41.667 21.32 10.22 41.37 4.11
510 514 4.212716 TGAGTAGACATAAGCGTATGGGT 58.787 43.478 21.32 11.59 41.37 4.51
511 515 4.848562 TGAGTAGACATAAGCGTATGGG 57.151 45.455 21.32 0.56 41.37 4.00
512 516 6.923508 TGAAATGAGTAGACATAAGCGTATGG 59.076 38.462 21.32 6.17 41.37 2.74
513 517 7.930513 TGAAATGAGTAGACATAAGCGTATG 57.069 36.000 16.80 16.80 42.55 2.39
514 518 9.197694 GAATGAAATGAGTAGACATAAGCGTAT 57.802 33.333 0.00 0.00 0.00 3.06
515 519 8.194769 TGAATGAAATGAGTAGACATAAGCGTA 58.805 33.333 0.00 0.00 0.00 4.42
516 520 7.041721 TGAATGAAATGAGTAGACATAAGCGT 58.958 34.615 0.00 0.00 0.00 5.07
517 521 7.468922 TGAATGAAATGAGTAGACATAAGCG 57.531 36.000 0.00 0.00 0.00 4.68
518 522 9.875675 GAATGAATGAAATGAGTAGACATAAGC 57.124 33.333 0.00 0.00 0.00 3.09
554 558 0.386113 GGTCAGCGTCTAGGGCTTAG 59.614 60.000 6.49 0.00 39.08 2.18
556 560 1.608717 CTGGTCAGCGTCTAGGGCTT 61.609 60.000 6.49 0.00 39.08 4.35
558 562 2.052690 TCTGGTCAGCGTCTAGGGC 61.053 63.158 0.00 0.00 0.00 5.19
625 629 1.676014 CCACGGTCAGATTGTTCCTCC 60.676 57.143 0.00 0.00 0.00 4.30
687 691 2.290323 CCAAGGTAAAGCACAGCCTAGT 60.290 50.000 0.00 0.00 0.00 2.57
688 692 2.290323 ACCAAGGTAAAGCACAGCCTAG 60.290 50.000 0.00 0.00 0.00 3.02
689 693 1.702957 ACCAAGGTAAAGCACAGCCTA 59.297 47.619 0.00 0.00 0.00 3.93
690 694 0.478507 ACCAAGGTAAAGCACAGCCT 59.521 50.000 0.00 0.00 0.00 4.58
691 695 1.328279 AACCAAGGTAAAGCACAGCC 58.672 50.000 0.00 0.00 0.00 4.85
692 696 4.783764 AATAACCAAGGTAAAGCACAGC 57.216 40.909 0.00 0.00 0.00 4.40
770 774 0.593128 GGTTACTGCTGTTGCTGGTG 59.407 55.000 0.09 0.00 41.57 4.17
771 775 0.182537 TGGTTACTGCTGTTGCTGGT 59.817 50.000 0.09 0.00 41.57 4.00
772 776 1.001378 GTTGGTTACTGCTGTTGCTGG 60.001 52.381 0.09 0.00 41.57 4.85
773 777 1.334059 CGTTGGTTACTGCTGTTGCTG 60.334 52.381 0.09 0.00 42.70 4.41
774 778 0.944386 CGTTGGTTACTGCTGTTGCT 59.056 50.000 0.09 0.00 40.48 3.91
775 779 0.660300 GCGTTGGTTACTGCTGTTGC 60.660 55.000 0.09 0.00 40.20 4.17
776 780 0.660488 TGCGTTGGTTACTGCTGTTG 59.340 50.000 0.09 0.00 0.00 3.33
777 781 0.661020 GTGCGTTGGTTACTGCTGTT 59.339 50.000 0.09 0.00 0.00 3.16
778 782 1.495584 CGTGCGTTGGTTACTGCTGT 61.496 55.000 0.66 0.66 0.00 4.40
816 826 2.188731 GGGGACGAATTCGGGGAC 59.811 66.667 29.79 16.89 44.95 4.46
817 827 2.039951 AGGGGACGAATTCGGGGA 59.960 61.111 29.79 0.00 44.95 4.81
828 839 2.689034 CTGGGACTGGGAGGGGAC 60.689 72.222 0.00 0.00 0.00 4.46
846 857 2.837031 TTTCGGGATTCTGGCCTGGC 62.837 60.000 11.05 11.05 32.48 4.85
862 873 1.382522 TTGCAGCTGATCCGGATTTC 58.617 50.000 20.22 8.43 0.00 2.17
877 888 2.264109 TTCGAACGTTTTGCTTTGCA 57.736 40.000 0.46 0.00 36.47 4.08
1610 1636 2.744202 CCAATCTTTGAACCGAGGTCAG 59.256 50.000 0.00 0.00 0.00 3.51
1721 1747 4.811555 TCATCACAAGACAAAGGAAACG 57.188 40.909 0.00 0.00 0.00 3.60
1820 1862 7.639113 AGTCTTGATTCTACAACAAAAACCA 57.361 32.000 0.00 0.00 0.00 3.67
1853 1895 0.895530 GTCAGTGGGGATTCTCGACA 59.104 55.000 1.33 0.00 0.00 4.35
1856 1898 2.761208 AGTTAGTCAGTGGGGATTCTCG 59.239 50.000 0.00 0.00 0.00 4.04
1923 1965 4.640771 AACAAAGAGACCATCCTGCTTA 57.359 40.909 0.00 0.00 0.00 3.09
1957 2000 6.005823 TCTTATGGAATCATGGCATACTTGG 58.994 40.000 0.00 0.00 34.96 3.61
2012 2055 7.601705 AATTCAAAAGGGAAGATGTCTTTCA 57.398 32.000 3.61 0.00 36.11 2.69
2077 2120 2.947652 CAATGGATGGCACTTCTACCAG 59.052 50.000 0.00 0.00 39.88 4.00
2157 2200 2.632377 ACTCCATGGTTCAATACTGCG 58.368 47.619 12.58 0.00 0.00 5.18
2170 2213 4.274459 GCTCAAATAGGTAGCAACTCCATG 59.726 45.833 0.00 0.00 36.26 3.66
2171 2214 4.164988 AGCTCAAATAGGTAGCAACTCCAT 59.835 41.667 0.00 0.00 38.75 3.41
2172 2215 3.519510 AGCTCAAATAGGTAGCAACTCCA 59.480 43.478 0.00 0.00 38.75 3.86
2173 2216 3.873952 CAGCTCAAATAGGTAGCAACTCC 59.126 47.826 0.00 0.00 38.75 3.85
2174 2217 4.331168 CACAGCTCAAATAGGTAGCAACTC 59.669 45.833 0.00 0.00 38.75 3.01
2175 2218 4.020218 TCACAGCTCAAATAGGTAGCAACT 60.020 41.667 0.00 0.00 38.75 3.16
2176 2219 4.253685 TCACAGCTCAAATAGGTAGCAAC 58.746 43.478 0.00 0.00 38.75 4.17
2177 2220 4.551702 TCACAGCTCAAATAGGTAGCAA 57.448 40.909 0.00 0.00 38.75 3.91
2178 2221 4.253685 GTTCACAGCTCAAATAGGTAGCA 58.746 43.478 0.00 0.00 38.75 3.49
2179 2222 4.253685 TGTTCACAGCTCAAATAGGTAGC 58.746 43.478 0.00 0.00 33.59 3.58
2406 2449 9.569167 GAACTTACCCAGTTTAAATAAGCATTC 57.431 33.333 5.73 1.65 46.53 2.67
2442 2485 4.404715 TGAGCTATAGACACACCCCTAAAC 59.595 45.833 3.21 0.00 0.00 2.01
2483 2526 6.317140 TGGCTATCAATGTTGACTGAGAAATC 59.683 38.462 0.00 0.00 40.49 2.17
2562 2605 8.087982 CTGAGTCACAGCTAAAAATAGTTTCA 57.912 34.615 0.00 0.00 39.86 2.69
2673 2718 8.281212 ACAGATGTAGAAATGGGTAAAACATC 57.719 34.615 0.00 0.00 41.14 3.06
2840 2889 7.642669 AGATGGAATGCGTGTAATATTTGAAG 58.357 34.615 0.00 0.00 0.00 3.02
2856 2905 7.066163 TGCACTTGTGAGTAATAAGATGGAATG 59.934 37.037 4.79 0.00 33.90 2.67
3146 3196 5.907197 TTAGTGTTGAGAAAGAAAGCGAG 57.093 39.130 0.00 0.00 0.00 5.03
3148 3198 4.848299 GCATTAGTGTTGAGAAAGAAAGCG 59.152 41.667 0.00 0.00 0.00 4.68
3454 3509 8.740123 TCTTGTACCTGAATAACAACAAGAAA 57.260 30.769 11.99 0.00 44.09 2.52
3455 3510 8.208224 TCTCTTGTACCTGAATAACAACAAGAA 58.792 33.333 14.47 5.82 45.19 2.52
3456 3511 7.732025 TCTCTTGTACCTGAATAACAACAAGA 58.268 34.615 13.30 13.30 44.47 3.02
3457 3512 7.962964 TCTCTTGTACCTGAATAACAACAAG 57.037 36.000 6.67 6.67 41.94 3.16
3633 3688 6.622427 ATGATATCATCTGAGCTGGAATCA 57.378 37.500 12.62 0.00 28.78 2.57
3843 3898 3.491639 CGGTGAATGCAATAATGGCAATG 59.508 43.478 0.00 0.00 45.60 2.82
4235 4302 3.071479 GTTTATGTGAACCTCTGCCGAA 58.929 45.455 0.00 0.00 0.00 4.30
4242 4309 6.363357 GCTTGAATGTTGTTTATGTGAACCTC 59.637 38.462 0.00 0.00 0.00 3.85
4512 4579 3.202818 TCTCCATGCCATGAAACCTATGT 59.797 43.478 6.18 0.00 0.00 2.29
4588 4663 7.024171 GGCTTCAATTCACTTAAACTCTAAGC 58.976 38.462 0.00 0.00 35.03 3.09
4616 4691 3.472652 ACACAAACCAGAAGCACGATAA 58.527 40.909 0.00 0.00 0.00 1.75
4618 4693 1.967319 ACACAAACCAGAAGCACGAT 58.033 45.000 0.00 0.00 0.00 3.73
4624 4699 6.710744 AGGTCATAAACTACACAAACCAGAAG 59.289 38.462 0.00 0.00 0.00 2.85
4706 4783 5.362556 CATTAAGTATGCGAAATGGGGAG 57.637 43.478 0.00 0.00 0.00 4.30
4730 4807 8.767478 TTCTGTTAGCTTAACTGGTGTATAAC 57.233 34.615 0.00 0.00 39.38 1.89
4830 4907 5.129320 ACTTTGCAAAGATGTTCCTTCCTTT 59.871 36.000 38.78 13.71 39.31 3.11
5501 5581 8.621532 ACATCATAGTTTTGTGTACAGTGAAT 57.378 30.769 0.00 0.00 0.00 2.57
5597 5677 5.845103 ACATTTGTGCACATGAGAATTTCA 58.155 33.333 23.70 2.04 40.85 2.69
5599 5679 7.927629 AGTAAACATTTGTGCACATGAGAATTT 59.072 29.630 23.70 18.52 0.00 1.82
5622 5702 4.797471 ACGTCATAGTTTTGCGTACAGTA 58.203 39.130 0.00 0.00 33.85 2.74
5623 5703 3.645884 ACGTCATAGTTTTGCGTACAGT 58.354 40.909 0.00 0.00 33.85 3.55
5624 5704 4.149221 TGAACGTCATAGTTTTGCGTACAG 59.851 41.667 0.00 0.00 35.22 2.74
5625 5705 4.049869 TGAACGTCATAGTTTTGCGTACA 58.950 39.130 0.00 0.00 35.22 2.90
5626 5706 4.380290 GTGAACGTCATAGTTTTGCGTAC 58.620 43.478 0.00 0.00 35.22 3.67
5627 5707 3.429543 GGTGAACGTCATAGTTTTGCGTA 59.570 43.478 0.00 0.00 35.22 4.42
5628 5708 2.222445 GGTGAACGTCATAGTTTTGCGT 59.778 45.455 0.00 0.00 37.38 5.24
5629 5709 2.478894 AGGTGAACGTCATAGTTTTGCG 59.521 45.455 0.00 0.00 34.00 4.85
5630 5710 4.213482 AGAAGGTGAACGTCATAGTTTTGC 59.787 41.667 0.00 0.00 34.00 3.68
5631 5711 5.924475 AGAAGGTGAACGTCATAGTTTTG 57.076 39.130 0.00 0.00 34.00 2.44
5632 5712 6.756221 ACTAGAAGGTGAACGTCATAGTTTT 58.244 36.000 0.00 0.00 34.00 2.43
5633 5713 6.208994 AGACTAGAAGGTGAACGTCATAGTTT 59.791 38.462 0.00 0.00 34.00 2.66
5634 5714 5.711036 AGACTAGAAGGTGAACGTCATAGTT 59.289 40.000 0.00 0.00 36.99 2.24
5635 5715 5.254901 AGACTAGAAGGTGAACGTCATAGT 58.745 41.667 0.00 0.00 30.64 2.12
5636 5716 5.354513 TGAGACTAGAAGGTGAACGTCATAG 59.645 44.000 0.00 0.00 0.00 2.23
5637 5717 5.250982 TGAGACTAGAAGGTGAACGTCATA 58.749 41.667 0.00 0.00 0.00 2.15
5638 5718 4.079970 TGAGACTAGAAGGTGAACGTCAT 58.920 43.478 0.00 0.00 0.00 3.06
5639 5719 3.483421 TGAGACTAGAAGGTGAACGTCA 58.517 45.455 0.00 0.00 0.00 4.35
5640 5720 4.705337 ATGAGACTAGAAGGTGAACGTC 57.295 45.455 0.00 0.00 0.00 4.34
5641 5721 7.876936 TTATATGAGACTAGAAGGTGAACGT 57.123 36.000 0.00 0.00 0.00 3.99
5642 5722 7.380065 GCTTTATATGAGACTAGAAGGTGAACG 59.620 40.741 0.00 0.00 0.00 3.95
5643 5723 8.198109 TGCTTTATATGAGACTAGAAGGTGAAC 58.802 37.037 0.00 0.00 0.00 3.18
5644 5724 8.198109 GTGCTTTATATGAGACTAGAAGGTGAA 58.802 37.037 0.00 0.00 0.00 3.18
5645 5725 7.342026 TGTGCTTTATATGAGACTAGAAGGTGA 59.658 37.037 0.00 0.00 0.00 4.02
5646 5726 7.492524 TGTGCTTTATATGAGACTAGAAGGTG 58.507 38.462 0.00 0.00 0.00 4.00
5647 5727 7.661536 TGTGCTTTATATGAGACTAGAAGGT 57.338 36.000 0.00 0.00 0.00 3.50
5648 5728 7.168302 CGTTGTGCTTTATATGAGACTAGAAGG 59.832 40.741 0.00 0.00 0.00 3.46
5649 5729 7.915923 TCGTTGTGCTTTATATGAGACTAGAAG 59.084 37.037 0.00 0.00 0.00 2.85
5650 5730 7.768240 TCGTTGTGCTTTATATGAGACTAGAA 58.232 34.615 0.00 0.00 0.00 2.10
5651 5731 7.329588 TCGTTGTGCTTTATATGAGACTAGA 57.670 36.000 0.00 0.00 0.00 2.43
5652 5732 9.847706 ATATCGTTGTGCTTTATATGAGACTAG 57.152 33.333 0.00 0.00 0.00 2.57
5662 5742 9.302345 CGAGGAATATATATCGTTGTGCTTTAT 57.698 33.333 0.00 0.00 0.00 1.40
5663 5743 8.517056 TCGAGGAATATATATCGTTGTGCTTTA 58.483 33.333 12.11 0.00 36.58 1.85
5664 5744 7.375834 TCGAGGAATATATATCGTTGTGCTTT 58.624 34.615 12.11 0.00 36.58 3.51
5665 5745 6.920817 TCGAGGAATATATATCGTTGTGCTT 58.079 36.000 12.11 0.00 36.58 3.91
5666 5746 6.510879 TCGAGGAATATATATCGTTGTGCT 57.489 37.500 12.11 0.00 36.58 4.40
5667 5747 7.913821 TGTATCGAGGAATATATATCGTTGTGC 59.086 37.037 12.11 6.74 36.58 4.57
5708 5796 6.348786 GCTGCACAAGAGAATTTAGAACATGA 60.349 38.462 0.00 0.00 0.00 3.07
5709 5797 5.798934 GCTGCACAAGAGAATTTAGAACATG 59.201 40.000 0.00 0.00 0.00 3.21
5710 5798 5.474532 TGCTGCACAAGAGAATTTAGAACAT 59.525 36.000 0.00 0.00 0.00 2.71
5711 5799 4.821260 TGCTGCACAAGAGAATTTAGAACA 59.179 37.500 0.00 0.00 0.00 3.18
5712 5800 5.180117 TCTGCTGCACAAGAGAATTTAGAAC 59.820 40.000 0.00 0.00 0.00 3.01
5713 5801 5.180117 GTCTGCTGCACAAGAGAATTTAGAA 59.820 40.000 0.00 0.00 0.00 2.10
5714 5802 4.692625 GTCTGCTGCACAAGAGAATTTAGA 59.307 41.667 0.00 0.00 0.00 2.10
5715 5803 4.453478 TGTCTGCTGCACAAGAGAATTTAG 59.547 41.667 0.00 0.00 0.00 1.85
5812 5900 5.413523 GGAAGATGAGCAATTTTGGCATTTT 59.586 36.000 0.00 0.00 0.00 1.82
5897 5985 2.508526 AGACTGGGAACAATCAAGTGC 58.491 47.619 0.00 0.00 39.57 4.40
6224 6312 3.252944 TCATTCGCTGATTTTGCTTGACA 59.747 39.130 0.00 0.00 0.00 3.58
6276 6364 7.140522 TGATATGATTCCTGACTTCCAATCA 57.859 36.000 0.00 0.00 39.09 2.57
6309 6397 7.005902 TGTTGCACCCAGATGATGATTATTAT 58.994 34.615 0.00 0.00 0.00 1.28
6310 6398 6.363882 TGTTGCACCCAGATGATGATTATTA 58.636 36.000 0.00 0.00 0.00 0.98
6311 6399 5.202765 TGTTGCACCCAGATGATGATTATT 58.797 37.500 0.00 0.00 0.00 1.40
6483 6571 6.622427 AAGGTTTAACAGCCTATACTGAGT 57.378 37.500 0.00 0.00 40.25 3.41
6694 6803 6.952935 ACTGAACTCTAAACTTAAGCATCG 57.047 37.500 1.29 0.00 0.00 3.84
6894 7003 3.445857 GGACTTACCATACGAGCAAGTC 58.554 50.000 4.57 4.57 42.72 3.01
6937 7046 8.422577 AAAGGTGGTCAATAAGCTTAGAAAAT 57.577 30.769 12.54 0.00 33.19 1.82
6966 7075 1.068121 AGGCTGAGCACCTAAAACCT 58.932 50.000 6.82 0.00 35.10 3.50
7366 7475 2.058057 CCATTGCAAAAGTAACACCGC 58.942 47.619 1.71 0.00 0.00 5.68
7495 7604 3.675348 TTGATGATCAAGGAGGCCATT 57.325 42.857 5.01 0.00 31.83 3.16
7780 7890 1.043816 ATATGACTGCTCCAGACCCG 58.956 55.000 0.00 0.00 35.18 5.28
8015 8125 9.461312 AGCTTTACCATGTTTCAATGTAGATAA 57.539 29.630 0.00 0.00 0.00 1.75
8017 8127 7.944729 AGCTTTACCATGTTTCAATGTAGAT 57.055 32.000 0.00 0.00 0.00 1.98
8018 8128 8.318412 TCTAGCTTTACCATGTTTCAATGTAGA 58.682 33.333 0.00 0.00 0.00 2.59
8019 8129 8.492673 TCTAGCTTTACCATGTTTCAATGTAG 57.507 34.615 0.00 0.00 0.00 2.74
8020 8130 8.892723 CATCTAGCTTTACCATGTTTCAATGTA 58.107 33.333 0.00 0.00 0.00 2.29
8021 8131 7.394359 ACATCTAGCTTTACCATGTTTCAATGT 59.606 33.333 0.00 0.00 0.00 2.71
8022 8132 7.699391 CACATCTAGCTTTACCATGTTTCAATG 59.301 37.037 0.00 0.00 0.00 2.82
8023 8133 7.394359 ACACATCTAGCTTTACCATGTTTCAAT 59.606 33.333 0.00 0.00 0.00 2.57
8024 8134 6.714810 ACACATCTAGCTTTACCATGTTTCAA 59.285 34.615 0.00 0.00 0.00 2.69
8025 8135 6.237901 ACACATCTAGCTTTACCATGTTTCA 58.762 36.000 0.00 0.00 0.00 2.69
8026 8136 6.743575 ACACATCTAGCTTTACCATGTTTC 57.256 37.500 0.00 0.00 0.00 2.78
8027 8137 8.807948 AATACACATCTAGCTTTACCATGTTT 57.192 30.769 0.00 0.00 0.00 2.83
8028 8138 9.326413 GTAATACACATCTAGCTTTACCATGTT 57.674 33.333 0.00 0.00 0.00 2.71
8029 8139 8.705594 AGTAATACACATCTAGCTTTACCATGT 58.294 33.333 0.00 0.00 0.00 3.21
8037 8147 8.521176 CGGGTAATAGTAATACACATCTAGCTT 58.479 37.037 0.00 0.00 0.00 3.74
8038 8148 7.362747 GCGGGTAATAGTAATACACATCTAGCT 60.363 40.741 0.00 0.00 0.00 3.32
8039 8149 6.750963 GCGGGTAATAGTAATACACATCTAGC 59.249 42.308 0.00 0.00 0.00 3.42
8040 8150 8.053026 AGCGGGTAATAGTAATACACATCTAG 57.947 38.462 0.00 0.00 0.00 2.43
8041 8151 7.886970 AGAGCGGGTAATAGTAATACACATCTA 59.113 37.037 0.00 0.00 0.00 1.98
8042 8152 6.720288 AGAGCGGGTAATAGTAATACACATCT 59.280 38.462 0.00 0.00 0.00 2.90
8043 8153 6.921914 AGAGCGGGTAATAGTAATACACATC 58.078 40.000 0.00 0.00 0.00 3.06
8044 8154 6.912951 AGAGCGGGTAATAGTAATACACAT 57.087 37.500 0.00 0.00 0.00 3.21
8045 8155 6.513884 CGAAGAGCGGGTAATAGTAATACACA 60.514 42.308 0.00 0.00 36.03 3.72
8046 8156 5.855395 CGAAGAGCGGGTAATAGTAATACAC 59.145 44.000 0.00 0.00 36.03 2.90
8047 8157 5.532406 ACGAAGAGCGGGTAATAGTAATACA 59.468 40.000 0.00 0.00 46.49 2.29
8048 8158 6.006759 ACGAAGAGCGGGTAATAGTAATAC 57.993 41.667 0.00 0.00 46.49 1.89
8049 8159 6.639632 AACGAAGAGCGGGTAATAGTAATA 57.360 37.500 0.00 0.00 46.49 0.98
8050 8160 5.526506 AACGAAGAGCGGGTAATAGTAAT 57.473 39.130 0.00 0.00 46.49 1.89
8051 8161 4.989279 AACGAAGAGCGGGTAATAGTAA 57.011 40.909 0.00 0.00 46.49 2.24
8052 8162 4.202050 GGAAACGAAGAGCGGGTAATAGTA 60.202 45.833 0.00 0.00 46.49 1.82
8053 8163 3.429960 GGAAACGAAGAGCGGGTAATAGT 60.430 47.826 0.00 0.00 46.49 2.12
8054 8164 3.121544 GGAAACGAAGAGCGGGTAATAG 58.878 50.000 0.00 0.00 46.49 1.73
8055 8165 2.496871 TGGAAACGAAGAGCGGGTAATA 59.503 45.455 0.00 0.00 46.49 0.98
8056 8166 1.276989 TGGAAACGAAGAGCGGGTAAT 59.723 47.619 0.00 0.00 46.49 1.89
8057 8167 0.680618 TGGAAACGAAGAGCGGGTAA 59.319 50.000 0.00 0.00 46.49 2.85
8058 8168 0.680618 TTGGAAACGAAGAGCGGGTA 59.319 50.000 0.00 0.00 46.49 3.69
8059 8169 0.179040 TTTGGAAACGAAGAGCGGGT 60.179 50.000 0.00 0.00 46.49 5.28
8060 8170 2.624169 TTTGGAAACGAAGAGCGGG 58.376 52.632 0.00 0.00 46.49 6.13
8079 8189 3.923017 ATGCAGCAAAACAGAAGGTAC 57.077 42.857 0.00 0.00 0.00 3.34
8080 8190 5.709631 TCAATATGCAGCAAAACAGAAGGTA 59.290 36.000 0.00 0.00 0.00 3.08
8081 8191 4.523943 TCAATATGCAGCAAAACAGAAGGT 59.476 37.500 0.00 0.00 0.00 3.50
8082 8192 5.063180 TCAATATGCAGCAAAACAGAAGG 57.937 39.130 0.00 0.00 0.00 3.46
8083 8193 6.255020 GGATTCAATATGCAGCAAAACAGAAG 59.745 38.462 0.00 0.00 0.00 2.85
8084 8194 6.101332 GGATTCAATATGCAGCAAAACAGAA 58.899 36.000 0.00 1.05 0.00 3.02
8085 8195 5.394443 GGGATTCAATATGCAGCAAAACAGA 60.394 40.000 0.00 0.00 0.00 3.41
8086 8196 4.807304 GGGATTCAATATGCAGCAAAACAG 59.193 41.667 0.00 0.00 0.00 3.16
8087 8197 4.467082 AGGGATTCAATATGCAGCAAAACA 59.533 37.500 0.00 0.00 0.00 2.83
8088 8198 5.014808 AGGGATTCAATATGCAGCAAAAC 57.985 39.130 0.00 0.00 0.00 2.43
8089 8199 5.680594 AAGGGATTCAATATGCAGCAAAA 57.319 34.783 0.00 0.00 0.00 2.44
8090 8200 5.893255 ACTAAGGGATTCAATATGCAGCAAA 59.107 36.000 0.00 0.00 0.00 3.68
8091 8201 5.448654 ACTAAGGGATTCAATATGCAGCAA 58.551 37.500 0.00 0.00 0.00 3.91
8092 8202 5.052693 ACTAAGGGATTCAATATGCAGCA 57.947 39.130 0.00 0.00 0.00 4.41
8093 8203 6.396829 AAACTAAGGGATTCAATATGCAGC 57.603 37.500 0.00 0.00 0.00 5.25
8101 8211 9.540538 TCATGGATTTTAAACTAAGGGATTCAA 57.459 29.630 0.00 0.00 0.00 2.69
8243 8453 2.563702 ACAAGGCATTTGCAACAAAGG 58.436 42.857 0.00 0.64 44.36 3.11
8265 8583 9.696572 AGGTAGAAAGTACTATACAGAACATCA 57.303 33.333 0.00 0.00 0.00 3.07
8271 8589 9.995003 GCTACTAGGTAGAAAGTACTATACAGA 57.005 37.037 8.66 0.00 38.29 3.41
8272 8590 9.218440 GGCTACTAGGTAGAAAGTACTATACAG 57.782 40.741 8.66 0.00 38.29 2.74
8273 8591 8.717717 TGGCTACTAGGTAGAAAGTACTATACA 58.282 37.037 8.66 0.00 38.29 2.29
8274 8592 9.218440 CTGGCTACTAGGTAGAAAGTACTATAC 57.782 40.741 8.66 0.02 38.29 1.47
8275 8593 7.882271 GCTGGCTACTAGGTAGAAAGTACTATA 59.118 40.741 8.66 0.00 38.29 1.31
8276 8594 6.716173 GCTGGCTACTAGGTAGAAAGTACTAT 59.284 42.308 8.66 0.00 38.29 2.12
8277 8595 6.060788 GCTGGCTACTAGGTAGAAAGTACTA 58.939 44.000 8.66 0.00 38.29 1.82
8278 8596 4.888823 GCTGGCTACTAGGTAGAAAGTACT 59.111 45.833 8.66 0.00 38.29 2.73
8279 8597 4.643784 TGCTGGCTACTAGGTAGAAAGTAC 59.356 45.833 8.66 0.00 38.29 2.73
8280 8598 4.863548 TGCTGGCTACTAGGTAGAAAGTA 58.136 43.478 8.66 2.51 38.29 2.24
8281 8599 3.709587 TGCTGGCTACTAGGTAGAAAGT 58.290 45.455 8.66 0.00 38.29 2.66
8282 8600 4.737855 TTGCTGGCTACTAGGTAGAAAG 57.262 45.455 8.66 5.99 38.29 2.62
8283 8601 5.396436 GGATTTGCTGGCTACTAGGTAGAAA 60.396 44.000 8.66 1.29 38.29 2.52
8284 8602 4.101119 GGATTTGCTGGCTACTAGGTAGAA 59.899 45.833 8.66 0.00 38.29 2.10
8285 8603 3.641906 GGATTTGCTGGCTACTAGGTAGA 59.358 47.826 8.66 0.00 38.29 2.59
8294 8612 6.186420 TCATACAATAGGATTTGCTGGCTA 57.814 37.500 0.00 0.00 0.00 3.93
8298 8616 6.713903 AGGACATCATACAATAGGATTTGCTG 59.286 38.462 0.00 0.00 28.66 4.41
8519 8845 6.912591 CAGACAAAATGTTAACAAGTCCAGAC 59.087 38.462 13.23 2.11 0.00 3.51
8520 8846 6.459573 GCAGACAAAATGTTAACAAGTCCAGA 60.460 38.462 13.23 0.00 0.00 3.86
8521 8847 5.687285 GCAGACAAAATGTTAACAAGTCCAG 59.313 40.000 13.23 13.35 0.00 3.86
8617 8955 5.727791 GCATACCACAAATTTCTCTAGCACG 60.728 44.000 0.00 0.00 0.00 5.34
8760 9098 5.453648 TGCACATGTAACAAATAAACGGAC 58.546 37.500 0.00 0.00 0.00 4.79
9001 9343 5.376625 GGGGCAAAAGGAAAAGAAAAGAAT 58.623 37.500 0.00 0.00 0.00 2.40
9133 9476 0.167908 AAACACACACACGCACACAG 59.832 50.000 0.00 0.00 0.00 3.66
9229 9572 2.115052 AGACCAAACGGCATGGCA 59.885 55.556 20.37 0.00 41.89 4.92
9245 9588 2.808543 GTTTAAGACACAGGAGGCACAG 59.191 50.000 0.00 0.00 0.00 3.66
9301 9647 4.776435 TCCATCTGCTGAATGTAATCCA 57.224 40.909 0.00 0.00 0.00 3.41
9445 9795 2.035961 TGAGCGATGCTATTCCTACCAC 59.964 50.000 0.00 0.00 39.88 4.16
9504 9854 1.681229 AGGGGGCCTAAGAAATGACA 58.319 50.000 0.84 0.00 28.47 3.58
9607 10752 0.974383 TCCTCCACCTCGTTCTTTCC 59.026 55.000 0.00 0.00 0.00 3.13
9613 10758 1.985116 GGCTCTCCTCCACCTCGTT 60.985 63.158 0.00 0.00 0.00 3.85
9627 10772 0.249398 TTTCCTCTAACGCCAGGCTC 59.751 55.000 10.54 0.00 0.00 4.70
9629 10774 1.401905 CAATTTCCTCTAACGCCAGGC 59.598 52.381 0.00 0.00 0.00 4.85
9637 10782 1.287739 CCCCCAGCCAATTTCCTCTAA 59.712 52.381 0.00 0.00 0.00 2.10
9639 10784 1.699752 CCCCCAGCCAATTTCCTCT 59.300 57.895 0.00 0.00 0.00 3.69
9652 10798 1.214305 AGAAATGCCACTAGCCCCCA 61.214 55.000 0.00 0.00 42.71 4.96
9659 10805 5.688621 CGTTATTACGCTAGAAATGCCACTA 59.311 40.000 0.00 0.00 41.41 2.74
9689 10835 3.835395 AGGTTCCGGGAATAGATCATCTC 59.165 47.826 13.48 0.00 0.00 2.75
9690 10836 3.580458 CAGGTTCCGGGAATAGATCATCT 59.420 47.826 13.48 0.00 0.00 2.90
9692 10838 2.639839 CCAGGTTCCGGGAATAGATCAT 59.360 50.000 13.48 0.00 0.00 2.45
9695 10841 2.489528 TCCAGGTTCCGGGAATAGAT 57.510 50.000 13.48 0.00 0.00 1.98
9702 10848 0.180406 CCACTTATCCAGGTTCCGGG 59.820 60.000 0.00 1.62 0.00 5.73
9731 10877 6.060136 TGAGAATTTGCTGATTCCCTAGATG 58.940 40.000 8.41 0.00 36.84 2.90
9768 10914 2.796483 AATTGTGCTACGCCGAGGCA 62.796 55.000 15.03 0.00 42.06 4.75
9791 10937 9.620660 TTTATCTTAGCTTTCAAAAATCGGTTC 57.379 29.630 0.00 0.00 0.00 3.62
9802 10948 9.507329 ACACTCAGATTTTTATCTTAGCTTTCA 57.493 29.630 0.00 0.00 0.00 2.69
9816 10964 8.689972 AGAATCTCAAACAAACACTCAGATTTT 58.310 29.630 0.00 0.00 30.92 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.