Multiple sequence alignment - TraesCS1A01G169900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G169900 chr1A 100.000 3188 0 0 1 3188 302960148 302956961 0.000000e+00 5888.0
1 TraesCS1A01G169900 chr1A 95.658 1451 61 2 1560 3010 302968349 302966901 0.000000e+00 2329.0
2 TraesCS1A01G169900 chr1A 90.135 223 19 3 1017 1239 224723881 224724100 1.450000e-73 287.0
3 TraesCS1A01G169900 chr1A 89.686 223 20 3 1017 1239 226476931 226477150 6.730000e-72 281.0
4 TraesCS1A01G169900 chr1A 91.549 142 12 0 1560 1701 271133360 271133501 2.510000e-46 196.0
5 TraesCS1A01G169900 chr1A 96.154 104 4 0 2168 2271 115307564 115307461 1.520000e-38 171.0
6 TraesCS1A01G169900 chr1A 93.162 117 5 3 2314 2427 482113901 482113785 5.470000e-38 169.0
7 TraesCS1A01G169900 chr1A 94.118 102 4 2 1 101 221728032 221728132 1.530000e-33 154.0
8 TraesCS1A01G169900 chr1A 94.898 98 3 2 1 98 36240161 36240256 5.510000e-33 152.0
9 TraesCS1A01G169900 chr1A 94.845 97 5 0 1 97 500595820 500595916 5.510000e-33 152.0
10 TraesCS1A01G169900 chr1A 90.991 111 1 1 1195 1296 302968457 302968347 1.190000e-29 141.0
11 TraesCS1A01G169900 chr1A 86.458 96 4 1 1210 1296 271133267 271133362 2.620000e-16 97.1
12 TraesCS1A01G169900 chr1A 92.063 63 4 1 1565 1626 538179365 538179303 1.580000e-13 87.9
13 TraesCS1A01G169900 chr6A 95.529 1521 64 3 1560 3078 230539387 230540905 0.000000e+00 2429.0
14 TraesCS1A01G169900 chr6A 92.116 1522 87 10 1560 3080 239767586 239766097 0.000000e+00 2115.0
15 TraesCS1A01G169900 chr6A 93.546 1224 66 4 86 1296 230538166 230539389 0.000000e+00 1810.0
16 TraesCS1A01G169900 chr6A 92.892 1224 73 4 86 1296 239768806 239767584 0.000000e+00 1766.0
17 TraesCS1A01G169900 chr6A 94.015 518 28 3 2393 2909 356696275 356695760 0.000000e+00 782.0
18 TraesCS1A01G169900 chr6A 94.004 517 23 6 2393 2909 356783214 356782706 0.000000e+00 776.0
19 TraesCS1A01G169900 chr6A 92.070 517 27 5 2393 2909 356738376 356737874 0.000000e+00 715.0
20 TraesCS1A01G169900 chr6A 78.532 1076 136 55 83 1112 305860965 305859939 1.260000e-173 619.0
21 TraesCS1A01G169900 chr6A 96.337 273 8 2 1292 1563 100731949 100732220 6.270000e-122 448.0
22 TraesCS1A01G169900 chr6A 94.949 99 5 0 1 99 423918738 423918836 4.260000e-34 156.0
23 TraesCS1A01G169900 chr6A 97.701 87 2 0 1 87 536293225 536293311 1.980000e-32 150.0
24 TraesCS1A01G169900 chr4A 93.319 1362 62 6 1566 2927 357822582 357821250 0.000000e+00 1984.0
25 TraesCS1A01G169900 chr4A 90.106 1223 81 15 86 1295 357823782 357822587 0.000000e+00 1552.0
26 TraesCS1A01G169900 chr4A 85.535 954 104 24 86 1018 270683487 270684427 0.000000e+00 966.0
27 TraesCS1A01G169900 chr4A 81.574 1042 134 28 86 1109 405397345 405398346 0.000000e+00 808.0
28 TraesCS1A01G169900 chr4A 94.402 393 21 1 1705 2097 48170525 48170916 1.270000e-168 603.0
29 TraesCS1A01G169900 chr4A 92.060 403 31 1 1705 2106 48180054 48180456 1.660000e-157 566.0
30 TraesCS1A01G169900 chr4A 94.444 54 3 0 2120 2173 243222947 243223000 2.040000e-12 84.2
31 TraesCS1A01G169900 chr3A 88.508 1166 94 13 83 1239 522967371 522966237 0.000000e+00 1375.0
32 TraesCS1A01G169900 chr3A 93.994 666 34 4 579 1239 522974850 522974186 0.000000e+00 1003.0
33 TraesCS1A01G169900 chr3A 88.951 715 70 9 86 797 212802236 212802944 0.000000e+00 874.0
34 TraesCS1A01G169900 chr3A 77.438 851 121 40 86 920 364868585 364869380 2.920000e-120 442.0
35 TraesCS1A01G169900 chr3A 91.071 224 17 3 1017 1240 22053321 22053541 1.860000e-77 300.0
36 TraesCS1A01G169900 chr3A 90.090 222 19 3 1017 1238 369017588 369017370 5.200000e-73 285.0
37 TraesCS1A01G169900 chr3A 91.220 205 16 2 909 1112 453369888 453369685 8.710000e-71 278.0
38 TraesCS1A01G169900 chr3A 95.495 111 4 1 2318 2427 311710561 311710451 3.270000e-40 176.0
39 TraesCS1A01G169900 chr3A 94.845 97 3 1 1 97 658165702 658165608 1.980000e-32 150.0
40 TraesCS1A01G169900 chr3A 88.119 101 10 2 823 923 409576268 409576170 5.590000e-23 119.0
41 TraesCS1A01G169900 chr3A 93.750 64 3 1 1560 1622 347101690 347101753 9.410000e-16 95.3
42 TraesCS1A01G169900 chr3A 96.364 55 2 0 1242 1296 345536958 345536904 1.220000e-14 91.6
43 TraesCS1A01G169900 chr3A 96.226 53 2 0 1244 1296 347101640 347101692 1.580000e-13 87.9
44 TraesCS1A01G169900 chr2A 92.435 846 54 5 86 923 359936806 359935963 0.000000e+00 1199.0
45 TraesCS1A01G169900 chr2A 95.517 513 21 2 2393 2905 48954994 48954484 0.000000e+00 819.0
46 TraesCS1A01G169900 chr2A 91.811 403 31 2 1671 2072 239341126 239341527 7.720000e-156 560.0
47 TraesCS1A01G169900 chr2A 97.348 264 7 0 1297 1560 337557589 337557852 1.740000e-122 449.0
48 TraesCS1A01G169900 chr2A 77.542 472 62 28 2620 3081 527004575 527005012 8.830000e-61 244.0
49 TraesCS1A01G169900 chr2A 93.805 113 6 1 2316 2427 312429080 312429192 5.470000e-38 169.0
50 TraesCS1A01G169900 chr2A 94.000 100 5 1 1 99 576188019 576187920 1.980000e-32 150.0
51 TraesCS1A01G169900 chr2A 72.089 541 96 48 2559 3078 344381871 344382377 9.350000e-21 111.0
52 TraesCS1A01G169900 chr2A 94.030 67 3 1 1560 1626 578885185 578885120 2.020000e-17 100.0
53 TraesCS1A01G169900 chr5A 86.416 957 100 19 86 1021 57275203 57274256 0.000000e+00 1020.0
54 TraesCS1A01G169900 chr5A 85.042 956 115 22 86 1021 57315945 57314998 0.000000e+00 948.0
55 TraesCS1A01G169900 chr5A 85.262 821 94 24 86 897 282681543 282682345 0.000000e+00 821.0
56 TraesCS1A01G169900 chr5A 93.284 402 27 0 1705 2106 166985401 166985802 7.610000e-166 593.0
57 TraesCS1A01G169900 chr5A 93.250 400 26 1 1707 2106 166968395 166968793 3.540000e-164 588.0
58 TraesCS1A01G169900 chr5A 96.691 272 7 2 1289 1560 605695035 605695304 4.850000e-123 451.0
59 TraesCS1A01G169900 chr5A 89.623 212 15 6 2089 2296 293903767 293903975 2.440000e-66 263.0
60 TraesCS1A01G169900 chr5A 89.151 212 16 6 2089 2296 293910785 293910993 1.130000e-64 257.0
61 TraesCS1A01G169900 chr5A 94.690 113 5 1 2316 2427 429187249 429187137 1.180000e-39 174.0
62 TraesCS1A01G169900 chr5A 88.298 94 2 3 1210 1294 429217598 429217505 1.560000e-18 104.0
63 TraesCS1A01G169900 chr5A 87.500 96 3 1 1210 1296 429188088 429187993 5.630000e-18 102.0
64 TraesCS1A01G169900 chr5A 85.417 96 5 1 1210 1296 382442299 382442394 1.220000e-14 91.6
65 TraesCS1A01G169900 chr5A 92.982 57 3 1 2047 2103 245884409 245884354 7.330000e-12 82.4
66 TraesCS1A01G169900 chr7A 95.761 519 18 4 2393 2909 423533348 423532832 0.000000e+00 833.0
67 TraesCS1A01G169900 chr7A 91.707 205 15 2 909 1112 335286289 335286086 1.870000e-72 283.0
68 TraesCS1A01G169900 chr7A 98.246 114 1 1 2315 2427 293823268 293823155 6.980000e-47 198.0
69 TraesCS1A01G169900 chr7A 92.806 139 4 5 2161 2296 202542264 202542129 2.510000e-46 196.0
70 TraesCS1A01G169900 chr7A 94.595 111 4 2 2188 2296 202549425 202549315 1.520000e-38 171.0
71 TraesCS1A01G169900 chr7A 92.105 114 8 1 2315 2427 293818408 293818295 3.290000e-35 159.0
72 TraesCS1A01G169900 chr7A 96.774 93 3 0 1 93 73863874 73863782 4.260000e-34 156.0
73 TraesCS1A01G169900 chr7A 93.269 104 3 4 1 102 527559616 527559717 1.980000e-32 150.0
74 TraesCS1A01G169900 chr3B 97.358 265 7 0 1296 1560 597797304 597797040 4.850000e-123 451.0
75 TraesCS1A01G169900 chr3B 96.981 265 8 0 1296 1560 585405592 585405856 2.260000e-121 446.0
76 TraesCS1A01G169900 chrUn 96.981 265 8 0 1296 1560 82631265 82631001 2.260000e-121 446.0
77 TraesCS1A01G169900 chr5B 96.981 265 8 0 1296 1560 547644203 547644467 2.260000e-121 446.0
78 TraesCS1A01G169900 chr5B 96.324 272 9 1 1296 1566 663641249 663641520 2.260000e-121 446.0
79 TraesCS1A01G169900 chr6B 95.636 275 11 1 1290 1564 181505211 181505484 1.050000e-119 440.0
80 TraesCS1A01G169900 chr7D 80.268 598 79 36 2379 2959 293518741 293519316 6.360000e-112 414.0
81 TraesCS1A01G169900 chr4D 94.340 53 3 0 2057 2109 135952086 135952034 7.330000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G169900 chr1A 302956961 302960148 3187 True 5888.0 5888 100.0000 1 3188 1 chr1A.!!$R2 3187
1 TraesCS1A01G169900 chr1A 302966901 302968457 1556 True 1235.0 2329 93.3245 1195 3010 2 chr1A.!!$R5 1815
2 TraesCS1A01G169900 chr6A 230538166 230540905 2739 False 2119.5 2429 94.5375 86 3078 2 chr6A.!!$F4 2992
3 TraesCS1A01G169900 chr6A 239766097 239768806 2709 True 1940.5 2115 92.5040 86 3080 2 chr6A.!!$R5 2994
4 TraesCS1A01G169900 chr6A 356695760 356696275 515 True 782.0 782 94.0150 2393 2909 1 chr6A.!!$R2 516
5 TraesCS1A01G169900 chr6A 356782706 356783214 508 True 776.0 776 94.0040 2393 2909 1 chr6A.!!$R4 516
6 TraesCS1A01G169900 chr6A 356737874 356738376 502 True 715.0 715 92.0700 2393 2909 1 chr6A.!!$R3 516
7 TraesCS1A01G169900 chr6A 305859939 305860965 1026 True 619.0 619 78.5320 83 1112 1 chr6A.!!$R1 1029
8 TraesCS1A01G169900 chr4A 357821250 357823782 2532 True 1768.0 1984 91.7125 86 2927 2 chr4A.!!$R1 2841
9 TraesCS1A01G169900 chr4A 270683487 270684427 940 False 966.0 966 85.5350 86 1018 1 chr4A.!!$F4 932
10 TraesCS1A01G169900 chr4A 405397345 405398346 1001 False 808.0 808 81.5740 86 1109 1 chr4A.!!$F5 1023
11 TraesCS1A01G169900 chr3A 522966237 522967371 1134 True 1375.0 1375 88.5080 83 1239 1 chr3A.!!$R6 1156
12 TraesCS1A01G169900 chr3A 522974186 522974850 664 True 1003.0 1003 93.9940 579 1239 1 chr3A.!!$R7 660
13 TraesCS1A01G169900 chr3A 212802236 212802944 708 False 874.0 874 88.9510 86 797 1 chr3A.!!$F2 711
14 TraesCS1A01G169900 chr3A 364868585 364869380 795 False 442.0 442 77.4380 86 920 1 chr3A.!!$F3 834
15 TraesCS1A01G169900 chr2A 359935963 359936806 843 True 1199.0 1199 92.4350 86 923 1 chr2A.!!$R2 837
16 TraesCS1A01G169900 chr2A 48954484 48954994 510 True 819.0 819 95.5170 2393 2905 1 chr2A.!!$R1 512
17 TraesCS1A01G169900 chr5A 57274256 57275203 947 True 1020.0 1020 86.4160 86 1021 1 chr5A.!!$R1 935
18 TraesCS1A01G169900 chr5A 57314998 57315945 947 True 948.0 948 85.0420 86 1021 1 chr5A.!!$R2 935
19 TraesCS1A01G169900 chr5A 282681543 282682345 802 False 821.0 821 85.2620 86 897 1 chr5A.!!$F3 811
20 TraesCS1A01G169900 chr7A 423532832 423533348 516 True 833.0 833 95.7610 2393 2909 1 chr7A.!!$R7 516
21 TraesCS1A01G169900 chr7D 293518741 293519316 575 False 414.0 414 80.2680 2379 2959 1 chr7D.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1076 0.398696 AAACACGGCATGGGTAGACA 59.601 50.0 0.0 0.0 0.00 3.41 F
1303 1397 0.038526 CGTGTACGTTCAGGCCTTCT 60.039 55.0 0.0 0.0 34.11 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2031 0.103208 GTCTTCATCGCGAGGTCCAT 59.897 55.0 21.22 0.0 0.00 3.41 R
3168 3282 0.035630 GCCACTGAGGTGAAGATGCT 60.036 55.0 0.00 0.0 45.61 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.340962 GGGTAATAAAGCCCAATAATGTCC 57.659 41.667 0.00 0.00 44.23 4.02
25 26 5.836358 GGGTAATAAAGCCCAATAATGTCCA 59.164 40.000 0.00 0.00 44.23 4.02
26 27 6.325286 GGGTAATAAAGCCCAATAATGTCCAA 59.675 38.462 0.00 0.00 44.23 3.53
27 28 7.147637 GGGTAATAAAGCCCAATAATGTCCAAA 60.148 37.037 0.00 0.00 44.23 3.28
28 29 8.261522 GGTAATAAAGCCCAATAATGTCCAAAA 58.738 33.333 0.00 0.00 0.00 2.44
29 30 9.093970 GTAATAAAGCCCAATAATGTCCAAAAC 57.906 33.333 0.00 0.00 0.00 2.43
30 31 5.559148 AAAGCCCAATAATGTCCAAAACA 57.441 34.783 0.00 0.00 43.51 2.83
31 32 4.806640 AGCCCAATAATGTCCAAAACAG 57.193 40.909 0.00 0.00 42.37 3.16
32 33 4.159557 AGCCCAATAATGTCCAAAACAGT 58.840 39.130 0.00 0.00 42.37 3.55
33 34 5.329399 AGCCCAATAATGTCCAAAACAGTA 58.671 37.500 0.00 0.00 42.17 2.74
34 35 5.418840 AGCCCAATAATGTCCAAAACAGTAG 59.581 40.000 0.00 0.00 41.35 2.57
35 36 5.417580 GCCCAATAATGTCCAAAACAGTAGA 59.582 40.000 0.00 0.00 41.35 2.59
36 37 6.096846 GCCCAATAATGTCCAAAACAGTAGAT 59.903 38.462 0.00 0.00 41.35 1.98
37 38 7.284489 GCCCAATAATGTCCAAAACAGTAGATA 59.716 37.037 0.00 0.00 41.35 1.98
38 39 9.184523 CCCAATAATGTCCAAAACAGTAGATAA 57.815 33.333 0.00 0.00 41.35 1.75
48 49 9.725019 TCCAAAACAGTAGATAATATAGCATGG 57.275 33.333 0.00 0.00 0.00 3.66
49 50 9.725019 CCAAAACAGTAGATAATATAGCATGGA 57.275 33.333 0.00 0.00 0.00 3.41
51 52 9.442047 AAAACAGTAGATAATATAGCATGGAGC 57.558 33.333 0.00 0.00 46.19 4.70
109 110 6.426633 CAGTATGATGCATGTCCGGTTTAATA 59.573 38.462 2.46 0.00 39.69 0.98
153 155 8.443937 GTGCAACAACCAAAACTACAAATTAAA 58.556 29.630 0.00 0.00 36.32 1.52
209 213 7.338196 TGACGGAACACCACATCAATTATTTAT 59.662 33.333 0.00 0.00 0.00 1.40
430 446 5.391843 CGGATGACATGTGCAAGTTTTATGA 60.392 40.000 1.15 0.00 0.00 2.15
789 818 1.945394 TCGTTCTCAGCGGTATACCTC 59.055 52.381 19.68 12.15 0.00 3.85
832 881 2.027377 AGTTCGTCGAGGGAAGTAGAGA 60.027 50.000 5.12 0.00 0.00 3.10
991 1076 0.398696 AAACACGGCATGGGTAGACA 59.601 50.000 0.00 0.00 0.00 3.41
1124 1209 3.219052 ACTTGACGAATCCGAACTCTC 57.781 47.619 0.00 0.00 39.50 3.20
1125 1210 2.557056 ACTTGACGAATCCGAACTCTCA 59.443 45.455 0.00 0.00 39.50 3.27
1131 1216 2.379972 GAATCCGAACTCTCAGAGGGA 58.620 52.381 3.57 3.48 33.35 4.20
1293 1387 1.226916 TCGGTGTTGCGTGTACGTT 60.227 52.632 6.27 0.00 42.22 3.99
1294 1388 1.199859 CGGTGTTGCGTGTACGTTC 59.800 57.895 6.27 0.00 42.22 3.95
1295 1389 1.481019 CGGTGTTGCGTGTACGTTCA 61.481 55.000 6.27 0.00 42.22 3.18
1296 1390 0.231279 GGTGTTGCGTGTACGTTCAG 59.769 55.000 6.27 0.00 42.22 3.02
1297 1391 0.231279 GTGTTGCGTGTACGTTCAGG 59.769 55.000 10.11 10.11 42.22 3.86
1298 1392 1.203313 GTTGCGTGTACGTTCAGGC 59.797 57.895 26.48 26.48 45.54 4.85
1299 1393 1.957186 TTGCGTGTACGTTCAGGCC 60.957 57.895 28.82 16.02 44.99 5.19
1300 1394 2.048503 GCGTGTACGTTCAGGCCT 60.049 61.111 23.93 0.00 41.44 5.19
1301 1395 1.666872 GCGTGTACGTTCAGGCCTT 60.667 57.895 23.93 0.00 41.44 4.35
1302 1396 1.623973 GCGTGTACGTTCAGGCCTTC 61.624 60.000 23.93 0.00 41.44 3.46
1303 1397 0.038526 CGTGTACGTTCAGGCCTTCT 60.039 55.000 0.00 0.00 34.11 2.85
1304 1398 1.604693 CGTGTACGTTCAGGCCTTCTT 60.605 52.381 0.00 0.00 34.11 2.52
1305 1399 2.490991 GTGTACGTTCAGGCCTTCTTT 58.509 47.619 0.00 0.00 0.00 2.52
1306 1400 2.223377 GTGTACGTTCAGGCCTTCTTTG 59.777 50.000 0.00 0.00 0.00 2.77
1307 1401 1.804748 GTACGTTCAGGCCTTCTTTGG 59.195 52.381 0.00 0.00 0.00 3.28
1308 1402 0.472471 ACGTTCAGGCCTTCTTTGGA 59.528 50.000 0.00 0.00 0.00 3.53
1309 1403 1.073923 ACGTTCAGGCCTTCTTTGGAT 59.926 47.619 0.00 0.00 0.00 3.41
1310 1404 2.162681 CGTTCAGGCCTTCTTTGGATT 58.837 47.619 0.00 0.00 0.00 3.01
1311 1405 2.095059 CGTTCAGGCCTTCTTTGGATTG 60.095 50.000 0.00 0.00 0.00 2.67
1312 1406 2.220653 TCAGGCCTTCTTTGGATTGG 57.779 50.000 0.00 0.00 0.00 3.16
1313 1407 1.710244 TCAGGCCTTCTTTGGATTGGA 59.290 47.619 0.00 0.00 0.00 3.53
1314 1408 2.097825 CAGGCCTTCTTTGGATTGGAG 58.902 52.381 0.00 0.00 0.00 3.86
1315 1409 1.006400 AGGCCTTCTTTGGATTGGAGG 59.994 52.381 0.00 0.00 0.00 4.30
1316 1410 1.005924 GGCCTTCTTTGGATTGGAGGA 59.994 52.381 0.00 0.00 0.00 3.71
1317 1411 2.358615 GGCCTTCTTTGGATTGGAGGAT 60.359 50.000 0.00 0.00 0.00 3.24
1318 1412 3.369175 GCCTTCTTTGGATTGGAGGATT 58.631 45.455 0.00 0.00 0.00 3.01
1319 1413 3.771479 GCCTTCTTTGGATTGGAGGATTT 59.229 43.478 0.00 0.00 0.00 2.17
1320 1414 4.223700 GCCTTCTTTGGATTGGAGGATTTT 59.776 41.667 0.00 0.00 0.00 1.82
1321 1415 5.625426 GCCTTCTTTGGATTGGAGGATTTTC 60.625 44.000 0.00 0.00 0.00 2.29
1322 1416 5.481473 CCTTCTTTGGATTGGAGGATTTTCA 59.519 40.000 0.00 0.00 0.00 2.69
1323 1417 5.982890 TCTTTGGATTGGAGGATTTTCAC 57.017 39.130 0.00 0.00 0.00 3.18
1324 1418 5.392995 TCTTTGGATTGGAGGATTTTCACA 58.607 37.500 0.00 0.00 0.00 3.58
1325 1419 5.477984 TCTTTGGATTGGAGGATTTTCACAG 59.522 40.000 0.00 0.00 0.00 3.66
1326 1420 3.700538 TGGATTGGAGGATTTTCACAGG 58.299 45.455 0.00 0.00 0.00 4.00
1327 1421 3.333381 TGGATTGGAGGATTTTCACAGGA 59.667 43.478 0.00 0.00 0.00 3.86
1328 1422 4.017222 TGGATTGGAGGATTTTCACAGGAT 60.017 41.667 0.00 0.00 0.00 3.24
1329 1423 4.958581 GGATTGGAGGATTTTCACAGGATT 59.041 41.667 0.00 0.00 0.00 3.01
1330 1424 5.423290 GGATTGGAGGATTTTCACAGGATTT 59.577 40.000 0.00 0.00 0.00 2.17
1331 1425 6.070596 GGATTGGAGGATTTTCACAGGATTTT 60.071 38.462 0.00 0.00 0.00 1.82
1332 1426 5.982890 TGGAGGATTTTCACAGGATTTTC 57.017 39.130 0.00 0.00 0.00 2.29
1333 1427 5.392995 TGGAGGATTTTCACAGGATTTTCA 58.607 37.500 0.00 0.00 0.00 2.69
1334 1428 6.018469 TGGAGGATTTTCACAGGATTTTCAT 58.982 36.000 0.00 0.00 0.00 2.57
1335 1429 6.071221 TGGAGGATTTTCACAGGATTTTCATG 60.071 38.462 0.00 0.00 33.86 3.07
1336 1430 6.290294 AGGATTTTCACAGGATTTTCATGG 57.710 37.500 0.00 0.00 31.56 3.66
1337 1431 5.188359 AGGATTTTCACAGGATTTTCATGGG 59.812 40.000 0.00 0.00 31.96 4.00
1338 1432 5.187576 GGATTTTCACAGGATTTTCATGGGA 59.812 40.000 0.00 0.00 38.99 4.37
1339 1433 6.126968 GGATTTTCACAGGATTTTCATGGGAT 60.127 38.462 0.00 0.00 40.52 3.85
1340 1434 7.069826 GGATTTTCACAGGATTTTCATGGGATA 59.930 37.037 0.00 0.00 40.52 2.59
1341 1435 7.976414 TTTTCACAGGATTTTCATGGGATAT 57.024 32.000 0.00 0.00 40.52 1.63
1342 1436 7.587037 TTTCACAGGATTTTCATGGGATATC 57.413 36.000 0.00 0.00 40.52 1.63
1343 1437 6.264771 TCACAGGATTTTCATGGGATATCA 57.735 37.500 4.83 0.00 35.47 2.15
1344 1438 6.671605 TCACAGGATTTTCATGGGATATCAA 58.328 36.000 4.83 0.00 35.47 2.57
1345 1439 7.299896 TCACAGGATTTTCATGGGATATCAAT 58.700 34.615 4.83 0.00 35.47 2.57
1346 1440 7.449395 TCACAGGATTTTCATGGGATATCAATC 59.551 37.037 4.83 3.45 35.47 2.67
1347 1441 7.450634 CACAGGATTTTCATGGGATATCAATCT 59.549 37.037 4.83 0.00 32.51 2.40
1348 1442 8.008922 ACAGGATTTTCATGGGATATCAATCTT 58.991 33.333 4.83 0.00 31.56 2.40
1349 1443 8.521176 CAGGATTTTCATGGGATATCAATCTTC 58.479 37.037 4.83 0.00 32.29 2.87
1350 1444 8.229605 AGGATTTTCATGGGATATCAATCTTCA 58.770 33.333 4.83 0.00 32.29 3.02
1351 1445 8.521176 GGATTTTCATGGGATATCAATCTTCAG 58.479 37.037 4.83 0.00 32.29 3.02
1352 1446 7.828508 TTTTCATGGGATATCAATCTTCAGG 57.171 36.000 4.83 0.00 32.29 3.86
1353 1447 6.768641 TTCATGGGATATCAATCTTCAGGA 57.231 37.500 4.83 0.00 32.29 3.86
1354 1448 6.964876 TCATGGGATATCAATCTTCAGGAT 57.035 37.500 4.83 0.00 35.97 3.24
1355 1449 7.339177 TCATGGGATATCAATCTTCAGGATT 57.661 36.000 4.83 0.00 44.66 3.01
1379 1473 5.913137 TTTCCTATGAAACGCATTTGGAT 57.087 34.783 0.00 0.00 37.85 3.41
1380 1474 5.499139 TTCCTATGAAACGCATTTGGATC 57.501 39.130 0.00 0.00 37.85 3.36
1381 1475 4.522114 TCCTATGAAACGCATTTGGATCA 58.478 39.130 0.00 0.00 38.44 2.92
1382 1476 4.946772 TCCTATGAAACGCATTTGGATCAA 59.053 37.500 0.00 0.00 38.44 2.57
1383 1477 5.417266 TCCTATGAAACGCATTTGGATCAAA 59.583 36.000 0.00 0.00 38.44 2.69
1384 1478 5.745294 CCTATGAAACGCATTTGGATCAAAG 59.255 40.000 0.00 0.00 36.76 2.77
1385 1479 3.911868 TGAAACGCATTTGGATCAAAGG 58.088 40.909 0.00 1.33 36.76 3.11
1386 1480 3.571828 TGAAACGCATTTGGATCAAAGGA 59.428 39.130 8.87 0.00 37.32 3.36
1387 1481 4.220382 TGAAACGCATTTGGATCAAAGGAT 59.780 37.500 8.87 0.00 37.32 3.24
1388 1482 4.806640 AACGCATTTGGATCAAAGGATT 57.193 36.364 8.87 0.73 37.32 3.01
1389 1483 4.114058 ACGCATTTGGATCAAAGGATTG 57.886 40.909 8.87 0.00 37.32 2.67
1390 1484 3.119029 ACGCATTTGGATCAAAGGATTGG 60.119 43.478 8.87 0.00 37.32 3.16
1391 1485 3.738899 CGCATTTGGATCAAAGGATTGGG 60.739 47.826 8.87 2.85 37.32 4.12
1392 1486 3.800531 CATTTGGATCAAAGGATTGGGC 58.199 45.455 0.00 0.00 37.32 5.36
1393 1487 1.864669 TTGGATCAAAGGATTGGGCC 58.135 50.000 0.00 0.00 37.15 5.80
1394 1488 0.709397 TGGATCAAAGGATTGGGCCA 59.291 50.000 0.00 0.00 37.61 5.36
1395 1489 1.291637 TGGATCAAAGGATTGGGCCAT 59.708 47.619 7.26 0.00 36.15 4.40
1396 1490 2.293051 TGGATCAAAGGATTGGGCCATT 60.293 45.455 7.26 2.95 36.15 3.16
1397 1491 3.052262 TGGATCAAAGGATTGGGCCATTA 60.052 43.478 7.26 0.00 36.15 1.90
1398 1492 3.966665 GGATCAAAGGATTGGGCCATTAA 59.033 43.478 7.26 0.00 37.15 1.40
1399 1493 4.408596 GGATCAAAGGATTGGGCCATTAAA 59.591 41.667 7.26 0.00 37.15 1.52
1400 1494 5.104569 GGATCAAAGGATTGGGCCATTAAAA 60.105 40.000 7.26 0.00 37.15 1.52
1401 1495 6.409579 GGATCAAAGGATTGGGCCATTAAAAT 60.410 38.462 7.26 0.00 37.15 1.82
1402 1496 6.385766 TCAAAGGATTGGGCCATTAAAATT 57.614 33.333 7.26 0.00 37.15 1.82
1403 1497 6.413892 TCAAAGGATTGGGCCATTAAAATTC 58.586 36.000 7.26 0.00 37.15 2.17
1404 1498 5.372343 AAGGATTGGGCCATTAAAATTCC 57.628 39.130 7.26 5.69 0.00 3.01
1405 1499 4.634411 AGGATTGGGCCATTAAAATTCCT 58.366 39.130 7.26 7.94 0.00 3.36
1406 1500 4.655649 AGGATTGGGCCATTAAAATTCCTC 59.344 41.667 7.26 0.00 0.00 3.71
1407 1501 4.408596 GGATTGGGCCATTAAAATTCCTCA 59.591 41.667 7.26 0.00 0.00 3.86
1408 1502 5.453762 GGATTGGGCCATTAAAATTCCTCAG 60.454 44.000 7.26 0.00 0.00 3.35
1409 1503 3.373830 TGGGCCATTAAAATTCCTCAGG 58.626 45.455 0.00 0.00 0.00 3.86
1410 1504 3.012274 TGGGCCATTAAAATTCCTCAGGA 59.988 43.478 0.00 0.00 0.00 3.86
1411 1505 4.226384 GGGCCATTAAAATTCCTCAGGAT 58.774 43.478 4.39 0.00 0.00 3.24
1412 1506 4.655649 GGGCCATTAAAATTCCTCAGGATT 59.344 41.667 4.39 0.00 0.00 3.01
1413 1507 5.453762 GGGCCATTAAAATTCCTCAGGATTG 60.454 44.000 4.39 0.00 0.00 2.67
1414 1508 5.453762 GGCCATTAAAATTCCTCAGGATTGG 60.454 44.000 0.00 0.00 0.00 3.16
1415 1509 5.453762 GCCATTAAAATTCCTCAGGATTGGG 60.454 44.000 0.00 0.00 0.00 4.12
1416 1510 5.662657 CCATTAAAATTCCTCAGGATTGGGT 59.337 40.000 0.00 0.00 0.00 4.51
1417 1511 6.183360 CCATTAAAATTCCTCAGGATTGGGTC 60.183 42.308 0.00 0.00 0.00 4.46
1418 1512 4.682021 AAAATTCCTCAGGATTGGGTCT 57.318 40.909 0.00 0.00 0.00 3.85
1419 1513 3.941704 AATTCCTCAGGATTGGGTCTC 57.058 47.619 0.00 0.00 0.00 3.36
1420 1514 1.584724 TTCCTCAGGATTGGGTCTCC 58.415 55.000 0.00 0.00 0.00 3.71
1421 1515 0.417437 TCCTCAGGATTGGGTCTCCA 59.583 55.000 0.00 0.00 42.25 3.86
1430 1524 2.538790 TGGGTCTCCAAAGTGCTGA 58.461 52.632 0.00 0.00 40.73 4.26
1431 1525 1.067295 TGGGTCTCCAAAGTGCTGAT 58.933 50.000 0.00 0.00 40.73 2.90
1432 1526 1.425066 TGGGTCTCCAAAGTGCTGATT 59.575 47.619 0.00 0.00 40.73 2.57
1433 1527 2.087646 GGGTCTCCAAAGTGCTGATTC 58.912 52.381 0.00 0.00 0.00 2.52
1434 1528 2.087646 GGTCTCCAAAGTGCTGATTCC 58.912 52.381 0.00 0.00 0.00 3.01
1435 1529 2.553028 GGTCTCCAAAGTGCTGATTCCA 60.553 50.000 0.00 0.00 0.00 3.53
1436 1530 3.149196 GTCTCCAAAGTGCTGATTCCAA 58.851 45.455 0.00 0.00 0.00 3.53
1437 1531 3.569701 GTCTCCAAAGTGCTGATTCCAAA 59.430 43.478 0.00 0.00 0.00 3.28
1438 1532 3.822735 TCTCCAAAGTGCTGATTCCAAAG 59.177 43.478 0.00 0.00 0.00 2.77
1439 1533 2.892852 TCCAAAGTGCTGATTCCAAAGG 59.107 45.455 0.00 0.00 0.00 3.11
1440 1534 2.892852 CCAAAGTGCTGATTCCAAAGGA 59.107 45.455 0.00 0.00 0.00 3.36
1441 1535 3.321682 CCAAAGTGCTGATTCCAAAGGAA 59.678 43.478 0.30 0.30 46.39 3.36
1454 1548 6.588719 TTCCAAAGGAATTTACACATGAGG 57.411 37.500 0.00 0.00 36.71 3.86
1455 1549 5.640147 TCCAAAGGAATTTACACATGAGGT 58.360 37.500 0.00 0.00 0.00 3.85
1456 1550 5.710099 TCCAAAGGAATTTACACATGAGGTC 59.290 40.000 0.00 0.00 0.00 3.85
1457 1551 5.105756 CCAAAGGAATTTACACATGAGGTCC 60.106 44.000 0.00 0.00 0.00 4.46
1458 1552 3.873910 AGGAATTTACACATGAGGTCCG 58.126 45.455 0.00 0.00 0.00 4.79
1459 1553 3.517901 AGGAATTTACACATGAGGTCCGA 59.482 43.478 0.00 0.00 0.00 4.55
1460 1554 3.621715 GGAATTTACACATGAGGTCCGAC 59.378 47.826 0.00 0.00 0.00 4.79
1461 1555 4.504858 GAATTTACACATGAGGTCCGACT 58.495 43.478 0.00 0.00 0.00 4.18
1462 1556 4.553330 ATTTACACATGAGGTCCGACTT 57.447 40.909 0.00 0.00 0.00 3.01
1463 1557 3.587797 TTACACATGAGGTCCGACTTC 57.412 47.619 0.00 3.72 0.00 3.01
1464 1558 1.633774 ACACATGAGGTCCGACTTCT 58.366 50.000 11.55 0.00 0.00 2.85
1465 1559 1.273606 ACACATGAGGTCCGACTTCTG 59.726 52.381 11.55 9.45 0.00 3.02
1466 1560 1.546029 CACATGAGGTCCGACTTCTGA 59.454 52.381 11.55 0.00 0.00 3.27
1467 1561 2.029020 CACATGAGGTCCGACTTCTGAA 60.029 50.000 11.55 0.00 0.00 3.02
1468 1562 2.632996 ACATGAGGTCCGACTTCTGAAA 59.367 45.455 11.55 0.00 0.00 2.69
1469 1563 3.071023 ACATGAGGTCCGACTTCTGAAAA 59.929 43.478 11.55 0.00 0.00 2.29
1470 1564 3.830744 TGAGGTCCGACTTCTGAAAAA 57.169 42.857 11.55 0.00 0.00 1.94
1491 1585 6.610075 AAAAATCCACAGAATTGGCTATGT 57.390 33.333 0.00 0.00 36.48 2.29
1492 1586 5.841957 AAATCCACAGAATTGGCTATGTC 57.158 39.130 0.00 0.00 36.48 3.06
1493 1587 3.998913 TCCACAGAATTGGCTATGTCA 57.001 42.857 0.00 0.00 36.48 3.58
1494 1588 4.508551 TCCACAGAATTGGCTATGTCAT 57.491 40.909 0.00 0.00 36.48 3.06
1495 1589 4.201657 TCCACAGAATTGGCTATGTCATG 58.798 43.478 0.00 0.00 36.48 3.07
1496 1590 3.317149 CCACAGAATTGGCTATGTCATGG 59.683 47.826 0.00 0.00 0.00 3.66
1497 1591 2.954318 ACAGAATTGGCTATGTCATGGC 59.046 45.455 12.50 12.50 35.84 4.40
1498 1592 2.953648 CAGAATTGGCTATGTCATGGCA 59.046 45.455 21.17 0.60 38.67 4.92
1504 1598 5.929058 TTGGCTATGTCATGGCAATTAAA 57.071 34.783 21.17 6.08 42.41 1.52
1505 1599 6.482898 TTGGCTATGTCATGGCAATTAAAT 57.517 33.333 21.17 0.00 42.41 1.40
1506 1600 6.088016 TGGCTATGTCATGGCAATTAAATC 57.912 37.500 21.17 3.64 38.67 2.17
1507 1601 5.010922 TGGCTATGTCATGGCAATTAAATCC 59.989 40.000 21.17 0.00 38.67 3.01
1508 1602 5.244626 GGCTATGTCATGGCAATTAAATCCT 59.755 40.000 21.17 0.00 38.67 3.24
1509 1603 6.385033 GCTATGTCATGGCAATTAAATCCTC 58.615 40.000 15.68 0.00 36.68 3.71
1510 1604 5.796424 ATGTCATGGCAATTAAATCCTCC 57.204 39.130 3.01 0.00 0.00 4.30
1511 1605 4.608269 TGTCATGGCAATTAAATCCTCCA 58.392 39.130 0.00 0.00 0.00 3.86
1512 1606 5.210430 TGTCATGGCAATTAAATCCTCCAT 58.790 37.500 0.00 0.00 34.90 3.41
1513 1607 5.662208 TGTCATGGCAATTAAATCCTCCATT 59.338 36.000 0.00 0.00 32.48 3.16
1514 1608 6.156602 TGTCATGGCAATTAAATCCTCCATTT 59.843 34.615 0.00 0.00 38.35 2.32
1515 1609 7.049754 GTCATGGCAATTAAATCCTCCATTTT 58.950 34.615 0.00 0.00 36.09 1.82
1516 1610 7.553760 GTCATGGCAATTAAATCCTCCATTTTT 59.446 33.333 0.00 0.00 36.09 1.94
1517 1611 7.769970 TCATGGCAATTAAATCCTCCATTTTTC 59.230 33.333 0.00 0.00 36.09 2.29
1518 1612 6.413892 TGGCAATTAAATCCTCCATTTTTCC 58.586 36.000 0.00 0.00 36.09 3.13
1519 1613 6.215227 TGGCAATTAAATCCTCCATTTTTCCT 59.785 34.615 0.00 0.00 36.09 3.36
1520 1614 7.401493 TGGCAATTAAATCCTCCATTTTTCCTA 59.599 33.333 0.00 0.00 36.09 2.94
1521 1615 8.432013 GGCAATTAAATCCTCCATTTTTCCTAT 58.568 33.333 0.00 0.00 36.09 2.57
1522 1616 9.836864 GCAATTAAATCCTCCATTTTTCCTATT 57.163 29.630 0.00 0.00 36.09 1.73
1525 1619 9.958125 ATTAAATCCTCCATTTTTCCTATTCCT 57.042 29.630 0.00 0.00 36.09 3.36
1526 1620 9.782900 TTAAATCCTCCATTTTTCCTATTCCTT 57.217 29.630 0.00 0.00 36.09 3.36
1527 1621 8.685257 AAATCCTCCATTTTTCCTATTCCTTT 57.315 30.769 0.00 0.00 29.60 3.11
1528 1622 7.666063 ATCCTCCATTTTTCCTATTCCTTTG 57.334 36.000 0.00 0.00 0.00 2.77
1529 1623 6.561294 TCCTCCATTTTTCCTATTCCTTTGT 58.439 36.000 0.00 0.00 0.00 2.83
1530 1624 7.016296 TCCTCCATTTTTCCTATTCCTTTGTT 58.984 34.615 0.00 0.00 0.00 2.83
1531 1625 7.512402 TCCTCCATTTTTCCTATTCCTTTGTTT 59.488 33.333 0.00 0.00 0.00 2.83
1532 1626 8.156820 CCTCCATTTTTCCTATTCCTTTGTTTT 58.843 33.333 0.00 0.00 0.00 2.43
1533 1627 8.900983 TCCATTTTTCCTATTCCTTTGTTTTG 57.099 30.769 0.00 0.00 0.00 2.44
1534 1628 7.443879 TCCATTTTTCCTATTCCTTTGTTTTGC 59.556 33.333 0.00 0.00 0.00 3.68
1535 1629 7.228308 CCATTTTTCCTATTCCTTTGTTTTGCA 59.772 33.333 0.00 0.00 0.00 4.08
1536 1630 8.619546 CATTTTTCCTATTCCTTTGTTTTGCAA 58.380 29.630 0.00 0.00 34.87 4.08
1537 1631 8.567285 TTTTTCCTATTCCTTTGTTTTGCAAA 57.433 26.923 8.05 8.05 44.05 3.68
1538 1632 8.744568 TTTTCCTATTCCTTTGTTTTGCAAAT 57.255 26.923 13.65 0.00 45.00 2.32
1539 1633 7.961325 TTCCTATTCCTTTGTTTTGCAAATC 57.039 32.000 13.65 12.94 45.00 2.17
1540 1634 6.463360 TCCTATTCCTTTGTTTTGCAAATCC 58.537 36.000 13.65 7.53 45.00 3.01
1541 1635 6.269769 TCCTATTCCTTTGTTTTGCAAATCCT 59.730 34.615 13.65 0.00 45.00 3.24
1542 1636 6.369615 CCTATTCCTTTGTTTTGCAAATCCTG 59.630 38.462 13.65 5.22 45.00 3.86
1543 1637 4.751767 TCCTTTGTTTTGCAAATCCTGT 57.248 36.364 13.65 0.00 45.00 4.00
1544 1638 4.440880 TCCTTTGTTTTGCAAATCCTGTG 58.559 39.130 13.65 1.54 45.00 3.66
1545 1639 4.161189 TCCTTTGTTTTGCAAATCCTGTGA 59.839 37.500 13.65 3.95 45.00 3.58
1546 1640 5.058490 CCTTTGTTTTGCAAATCCTGTGAT 58.942 37.500 13.65 0.00 45.00 3.06
1547 1641 5.178067 CCTTTGTTTTGCAAATCCTGTGATC 59.822 40.000 13.65 0.00 45.00 2.92
1548 1642 4.255833 TGTTTTGCAAATCCTGTGATCC 57.744 40.909 13.65 0.00 0.00 3.36
1549 1643 3.640498 TGTTTTGCAAATCCTGTGATCCA 59.360 39.130 13.65 0.00 0.00 3.41
1550 1644 4.100653 TGTTTTGCAAATCCTGTGATCCAA 59.899 37.500 13.65 0.00 0.00 3.53
1551 1645 4.952071 TTTGCAAATCCTGTGATCCAAA 57.048 36.364 8.05 0.00 0.00 3.28
1552 1646 4.524316 TTGCAAATCCTGTGATCCAAAG 57.476 40.909 0.00 0.00 0.00 2.77
1553 1647 3.765381 TGCAAATCCTGTGATCCAAAGA 58.235 40.909 0.00 0.00 0.00 2.52
1554 1648 4.151121 TGCAAATCCTGTGATCCAAAGAA 58.849 39.130 0.00 0.00 0.00 2.52
1555 1649 4.219070 TGCAAATCCTGTGATCCAAAGAAG 59.781 41.667 0.00 0.00 0.00 2.85
1556 1650 4.741342 CAAATCCTGTGATCCAAAGAAGC 58.259 43.478 0.00 0.00 0.00 3.86
1557 1651 2.496899 TCCTGTGATCCAAAGAAGCC 57.503 50.000 0.00 0.00 0.00 4.35
1558 1652 1.004745 TCCTGTGATCCAAAGAAGCCC 59.995 52.381 0.00 0.00 0.00 5.19
1937 2031 3.777910 GGGAGGCGCCGGACTAAA 61.778 66.667 23.20 0.00 37.63 1.85
1982 2076 2.579684 GAAGCAGGGAACGAGGCGAT 62.580 60.000 0.00 0.00 33.05 4.58
2363 2457 2.123982 GCTGCTGCTGGGCCTTAT 60.124 61.111 8.53 0.00 36.03 1.73
2509 2612 6.584184 GCCTCTTTTCTATTTCTTCAAACAGC 59.416 38.462 0.00 0.00 0.00 4.40
2701 2804 7.801104 ACCTAACCAAAACATTTCCAAAAGAT 58.199 30.769 0.00 0.00 0.00 2.40
2702 2805 8.929487 ACCTAACCAAAACATTTCCAAAAGATA 58.071 29.630 0.00 0.00 0.00 1.98
2826 2934 1.575447 AAGGAAGGAGGGGGTGATGC 61.575 60.000 0.00 0.00 0.00 3.91
3043 3157 6.781943 TGGAGATCAACATGGATATAATGCA 58.218 36.000 0.00 0.00 34.26 3.96
3080 3194 4.919774 ACATATGGGGTGTTACAACTGA 57.080 40.909 7.80 0.00 0.00 3.41
3081 3195 4.585879 ACATATGGGGTGTTACAACTGAC 58.414 43.478 7.80 0.00 0.00 3.51
3082 3196 4.288626 ACATATGGGGTGTTACAACTGACT 59.711 41.667 7.80 0.00 0.00 3.41
3083 3197 2.631160 TGGGGTGTTACAACTGACTG 57.369 50.000 0.00 0.00 0.00 3.51
3084 3198 1.142060 TGGGGTGTTACAACTGACTGG 59.858 52.381 0.00 0.00 0.00 4.00
3085 3199 1.544759 GGGGTGTTACAACTGACTGGG 60.545 57.143 0.00 0.00 0.00 4.45
3086 3200 1.544759 GGGTGTTACAACTGACTGGGG 60.545 57.143 0.00 0.00 0.00 4.96
3087 3201 1.418637 GGTGTTACAACTGACTGGGGA 59.581 52.381 0.00 0.00 0.00 4.81
3088 3202 2.550208 GGTGTTACAACTGACTGGGGAG 60.550 54.545 0.00 0.00 0.00 4.30
3089 3203 1.697432 TGTTACAACTGACTGGGGAGG 59.303 52.381 0.00 0.00 0.00 4.30
3090 3204 1.975680 GTTACAACTGACTGGGGAGGA 59.024 52.381 0.00 0.00 0.00 3.71
3091 3205 2.572104 GTTACAACTGACTGGGGAGGAT 59.428 50.000 0.00 0.00 0.00 3.24
3092 3206 1.280457 ACAACTGACTGGGGAGGATC 58.720 55.000 0.00 0.00 0.00 3.36
3104 3218 2.388347 GAGGATCCAACGCTTGAGC 58.612 57.895 15.82 0.00 37.78 4.26
3105 3219 0.391661 GAGGATCCAACGCTTGAGCA 60.392 55.000 15.82 0.00 42.21 4.26
3106 3220 0.254178 AGGATCCAACGCTTGAGCAT 59.746 50.000 15.82 0.00 42.21 3.79
3107 3221 1.098050 GGATCCAACGCTTGAGCATT 58.902 50.000 6.95 0.00 42.21 3.56
3108 3222 2.092968 AGGATCCAACGCTTGAGCATTA 60.093 45.455 15.82 0.00 42.21 1.90
3109 3223 2.880890 GGATCCAACGCTTGAGCATTAT 59.119 45.455 6.95 0.00 42.21 1.28
3110 3224 3.316308 GGATCCAACGCTTGAGCATTATT 59.684 43.478 6.95 0.00 42.21 1.40
3111 3225 4.202050 GGATCCAACGCTTGAGCATTATTT 60.202 41.667 6.95 0.00 42.21 1.40
3112 3226 4.095410 TCCAACGCTTGAGCATTATTTG 57.905 40.909 3.65 0.00 42.21 2.32
3113 3227 3.119531 TCCAACGCTTGAGCATTATTTGG 60.120 43.478 3.65 7.22 42.21 3.28
3114 3228 3.119531 CCAACGCTTGAGCATTATTTGGA 60.120 43.478 3.65 0.00 42.21 3.53
3115 3229 3.764885 ACGCTTGAGCATTATTTGGAC 57.235 42.857 3.65 0.00 42.21 4.02
3116 3230 2.423538 ACGCTTGAGCATTATTTGGACC 59.576 45.455 3.65 0.00 42.21 4.46
3117 3231 2.223572 CGCTTGAGCATTATTTGGACCC 60.224 50.000 3.65 0.00 42.21 4.46
3118 3232 2.101415 GCTTGAGCATTATTTGGACCCC 59.899 50.000 0.00 0.00 41.59 4.95
3119 3233 3.364549 CTTGAGCATTATTTGGACCCCA 58.635 45.455 0.00 0.00 0.00 4.96
3120 3234 3.686227 TGAGCATTATTTGGACCCCAT 57.314 42.857 0.00 0.00 31.53 4.00
3121 3235 3.992999 TGAGCATTATTTGGACCCCATT 58.007 40.909 0.00 0.00 31.53 3.16
3122 3236 5.136068 TGAGCATTATTTGGACCCCATTA 57.864 39.130 0.00 0.00 31.53 1.90
3123 3237 5.139727 TGAGCATTATTTGGACCCCATTAG 58.860 41.667 0.00 0.00 31.53 1.73
3124 3238 5.140454 GAGCATTATTTGGACCCCATTAGT 58.860 41.667 0.00 0.00 31.53 2.24
3125 3239 5.140454 AGCATTATTTGGACCCCATTAGTC 58.860 41.667 0.00 0.00 31.53 2.59
3126 3240 4.892934 GCATTATTTGGACCCCATTAGTCA 59.107 41.667 0.00 0.00 35.89 3.41
3127 3241 5.362430 GCATTATTTGGACCCCATTAGTCAA 59.638 40.000 0.00 0.00 35.89 3.18
3128 3242 6.041979 GCATTATTTGGACCCCATTAGTCAAT 59.958 38.462 0.00 0.00 35.89 2.57
3129 3243 7.418942 GCATTATTTGGACCCCATTAGTCAATT 60.419 37.037 0.00 0.00 35.89 2.32
3130 3244 8.485392 CATTATTTGGACCCCATTAGTCAATTT 58.515 33.333 0.00 0.00 35.89 1.82
3131 3245 5.736951 TTTGGACCCCATTAGTCAATTTG 57.263 39.130 0.00 0.00 35.89 2.32
3132 3246 3.707316 TGGACCCCATTAGTCAATTTGG 58.293 45.455 0.00 0.00 35.89 3.28
3133 3247 3.076785 TGGACCCCATTAGTCAATTTGGT 59.923 43.478 0.00 0.00 35.89 3.67
3134 3248 3.447229 GGACCCCATTAGTCAATTTGGTG 59.553 47.826 0.00 0.00 35.89 4.17
3135 3249 2.831526 ACCCCATTAGTCAATTTGGTGC 59.168 45.455 0.00 0.00 28.70 5.01
3136 3250 2.168313 CCCCATTAGTCAATTTGGTGCC 59.832 50.000 0.00 0.00 0.00 5.01
3137 3251 2.159254 CCCATTAGTCAATTTGGTGCCG 60.159 50.000 0.00 0.00 0.00 5.69
3138 3252 2.159254 CCATTAGTCAATTTGGTGCCGG 60.159 50.000 0.00 0.00 0.00 6.13
3139 3253 2.279935 TTAGTCAATTTGGTGCCGGT 57.720 45.000 1.90 0.00 0.00 5.28
3140 3254 1.816074 TAGTCAATTTGGTGCCGGTC 58.184 50.000 1.90 0.00 0.00 4.79
3141 3255 0.110486 AGTCAATTTGGTGCCGGTCT 59.890 50.000 1.90 0.00 0.00 3.85
3142 3256 0.521735 GTCAATTTGGTGCCGGTCTC 59.478 55.000 1.90 0.00 0.00 3.36
3143 3257 0.608035 TCAATTTGGTGCCGGTCTCC 60.608 55.000 1.90 6.68 0.00 3.71
3144 3258 0.893270 CAATTTGGTGCCGGTCTCCA 60.893 55.000 13.43 13.43 36.62 3.86
3145 3259 0.039618 AATTTGGTGCCGGTCTCCAT 59.960 50.000 16.75 4.56 38.08 3.41
3146 3260 0.394352 ATTTGGTGCCGGTCTCCATC 60.394 55.000 16.75 2.31 38.08 3.51
3147 3261 1.773856 TTTGGTGCCGGTCTCCATCA 61.774 55.000 16.75 4.81 38.08 3.07
3148 3262 2.125106 GGTGCCGGTCTCCATCAC 60.125 66.667 1.90 0.00 0.00 3.06
3149 3263 2.509336 GTGCCGGTCTCCATCACG 60.509 66.667 1.90 0.00 0.00 4.35
3150 3264 4.451150 TGCCGGTCTCCATCACGC 62.451 66.667 1.90 0.00 0.00 5.34
3151 3265 4.148825 GCCGGTCTCCATCACGCT 62.149 66.667 1.90 0.00 0.00 5.07
3152 3266 2.782222 GCCGGTCTCCATCACGCTA 61.782 63.158 1.90 0.00 0.00 4.26
3153 3267 1.360551 CCGGTCTCCATCACGCTAG 59.639 63.158 0.00 0.00 0.00 3.42
3154 3268 1.299468 CGGTCTCCATCACGCTAGC 60.299 63.158 4.06 4.06 0.00 3.42
3155 3269 1.299468 GGTCTCCATCACGCTAGCG 60.299 63.158 34.27 34.27 46.03 4.26
3156 3270 1.725557 GGTCTCCATCACGCTAGCGA 61.726 60.000 41.33 22.43 42.83 4.93
3157 3271 0.312416 GTCTCCATCACGCTAGCGAT 59.688 55.000 41.33 23.70 42.83 4.58
3158 3272 0.312102 TCTCCATCACGCTAGCGATG 59.688 55.000 41.33 31.78 42.83 3.84
3159 3273 0.031314 CTCCATCACGCTAGCGATGT 59.969 55.000 41.33 22.98 42.83 3.06
3160 3274 0.249031 TCCATCACGCTAGCGATGTG 60.249 55.000 41.33 30.58 42.83 3.21
3161 3275 1.561730 CATCACGCTAGCGATGTGC 59.438 57.895 41.33 0.01 46.98 4.57
3182 3296 3.935315 CTTCTCAAGCATCTTCACCTCA 58.065 45.455 0.00 0.00 0.00 3.86
3183 3297 3.606595 TCTCAAGCATCTTCACCTCAG 57.393 47.619 0.00 0.00 0.00 3.35
3184 3298 2.902486 TCTCAAGCATCTTCACCTCAGT 59.098 45.455 0.00 0.00 0.00 3.41
3185 3299 3.001414 CTCAAGCATCTTCACCTCAGTG 58.999 50.000 0.00 0.00 46.00 3.66
3186 3300 2.082231 CAAGCATCTTCACCTCAGTGG 58.918 52.381 0.00 0.00 44.64 4.00
3187 3301 0.035630 AGCATCTTCACCTCAGTGGC 60.036 55.000 0.00 0.00 44.64 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.969993 TGGACATTATTGGGCTTTATTACC 57.030 37.500 0.00 0.00 0.00 2.85
3 4 9.093970 GTTTTGGACATTATTGGGCTTTATTAC 57.906 33.333 0.00 0.00 0.00 1.89
4 5 8.816894 TGTTTTGGACATTATTGGGCTTTATTA 58.183 29.630 0.00 0.00 32.00 0.98
5 6 7.684529 TGTTTTGGACATTATTGGGCTTTATT 58.315 30.769 0.00 0.00 32.00 1.40
6 7 7.038373 ACTGTTTTGGACATTATTGGGCTTTAT 60.038 33.333 0.00 0.00 37.69 1.40
7 8 6.268847 ACTGTTTTGGACATTATTGGGCTTTA 59.731 34.615 0.00 0.00 37.69 1.85
8 9 5.071653 ACTGTTTTGGACATTATTGGGCTTT 59.928 36.000 0.00 0.00 37.69 3.51
9 10 4.592778 ACTGTTTTGGACATTATTGGGCTT 59.407 37.500 0.00 0.00 37.69 4.35
10 11 4.159557 ACTGTTTTGGACATTATTGGGCT 58.840 39.130 0.00 0.00 37.69 5.19
11 12 4.535526 ACTGTTTTGGACATTATTGGGC 57.464 40.909 0.00 0.00 37.69 5.36
12 13 7.645058 ATCTACTGTTTTGGACATTATTGGG 57.355 36.000 0.00 0.00 37.69 4.12
22 23 9.725019 CCATGCTATATTATCTACTGTTTTGGA 57.275 33.333 0.00 0.00 0.00 3.53
23 24 9.725019 TCCATGCTATATTATCTACTGTTTTGG 57.275 33.333 0.00 0.00 0.00 3.28
25 26 9.442047 GCTCCATGCTATATTATCTACTGTTTT 57.558 33.333 0.00 0.00 38.95 2.43
26 27 8.597167 TGCTCCATGCTATATTATCTACTGTTT 58.403 33.333 0.00 0.00 43.37 2.83
27 28 8.138928 TGCTCCATGCTATATTATCTACTGTT 57.861 34.615 0.00 0.00 43.37 3.16
28 29 7.724490 TGCTCCATGCTATATTATCTACTGT 57.276 36.000 0.00 0.00 43.37 3.55
61 62 9.516546 ACTGATACATCTCCAACGTATCTATAA 57.483 33.333 9.46 0.00 41.27 0.98
63 64 9.688091 ATACTGATACATCTCCAACGTATCTAT 57.312 33.333 9.46 2.16 41.27 1.98
64 65 8.947115 CATACTGATACATCTCCAACGTATCTA 58.053 37.037 9.46 0.00 41.27 1.98
65 66 7.665974 TCATACTGATACATCTCCAACGTATCT 59.334 37.037 9.46 0.00 41.27 1.98
66 67 7.817641 TCATACTGATACATCTCCAACGTATC 58.182 38.462 0.00 0.00 41.14 2.24
67 68 7.761038 TCATACTGATACATCTCCAACGTAT 57.239 36.000 0.00 0.00 0.00 3.06
68 69 7.593825 CATCATACTGATACATCTCCAACGTA 58.406 38.462 0.00 0.00 34.28 3.57
69 70 6.450545 CATCATACTGATACATCTCCAACGT 58.549 40.000 0.00 0.00 34.28 3.99
70 71 5.347093 GCATCATACTGATACATCTCCAACG 59.653 44.000 0.00 0.00 34.28 4.10
71 72 6.226052 TGCATCATACTGATACATCTCCAAC 58.774 40.000 0.00 0.00 34.28 3.77
72 73 6.423776 TGCATCATACTGATACATCTCCAA 57.576 37.500 0.00 0.00 34.28 3.53
73 74 6.013984 ACATGCATCATACTGATACATCTCCA 60.014 38.462 0.00 0.00 38.45 3.86
74 75 6.404708 ACATGCATCATACTGATACATCTCC 58.595 40.000 0.00 0.00 38.45 3.71
75 76 6.534436 GGACATGCATCATACTGATACATCTC 59.466 42.308 0.00 0.25 38.45 2.75
76 77 6.404708 GGACATGCATCATACTGATACATCT 58.595 40.000 0.00 0.00 38.45 2.90
77 78 5.290400 CGGACATGCATCATACTGATACATC 59.710 44.000 0.00 0.00 38.45 3.06
78 79 5.173664 CGGACATGCATCATACTGATACAT 58.826 41.667 0.00 0.00 40.49 2.29
79 80 4.559153 CGGACATGCATCATACTGATACA 58.441 43.478 0.00 0.00 34.28 2.29
80 81 3.928992 CCGGACATGCATCATACTGATAC 59.071 47.826 0.00 0.00 34.28 2.24
81 82 3.578282 ACCGGACATGCATCATACTGATA 59.422 43.478 9.46 0.00 34.28 2.15
82 83 2.369860 ACCGGACATGCATCATACTGAT 59.630 45.455 9.46 0.00 37.65 2.90
83 84 1.762370 ACCGGACATGCATCATACTGA 59.238 47.619 9.46 0.00 0.00 3.41
84 85 2.245159 ACCGGACATGCATCATACTG 57.755 50.000 9.46 0.00 0.00 2.74
109 110 1.826720 CACTTTGCCATGCCATACCTT 59.173 47.619 0.00 0.00 0.00 3.50
153 155 1.203052 CCGTTGCATTTTGAGCTCCAT 59.797 47.619 12.15 0.00 0.00 3.41
209 213 8.190326 TGTTGAGTACCTAAATGAGAGAGAAA 57.810 34.615 0.00 0.00 0.00 2.52
291 298 1.543802 CCGGCCTCATTTAAACTTGCA 59.456 47.619 0.00 0.00 0.00 4.08
602 623 2.933906 GACACACTTCCGTCACTTTTCA 59.066 45.455 0.00 0.00 32.24 2.69
789 818 2.159572 CGAACCGTCCCATTTGCTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
974 1059 0.618458 AATGTCTACCCATGCCGTGT 59.382 50.000 0.00 0.00 0.00 4.49
981 1066 3.070159 CCATCGAGTGAATGTCTACCCAT 59.930 47.826 0.00 0.00 0.00 4.00
991 1076 1.471676 GCCGAAGACCATCGAGTGAAT 60.472 52.381 0.00 0.00 45.48 2.57
1069 1154 1.332997 GTACGACTACACATCCGGGAG 59.667 57.143 0.00 0.00 0.00 4.30
1124 1209 2.258591 CACCACGACGTCCCTCTG 59.741 66.667 10.58 0.00 0.00 3.35
1125 1210 3.681835 GCACCACGACGTCCCTCT 61.682 66.667 10.58 0.00 0.00 3.69
1131 1216 2.354305 GAACGAGCACCACGACGT 60.354 61.111 0.00 0.00 40.64 4.34
1293 1387 1.710244 TCCAATCCAAAGAAGGCCTGA 59.290 47.619 5.69 0.00 0.00 3.86
1294 1388 2.097825 CTCCAATCCAAAGAAGGCCTG 58.902 52.381 5.69 0.00 0.00 4.85
1295 1389 1.006400 CCTCCAATCCAAAGAAGGCCT 59.994 52.381 0.00 0.00 0.00 5.19
1296 1390 1.005924 TCCTCCAATCCAAAGAAGGCC 59.994 52.381 0.00 0.00 0.00 5.19
1297 1391 2.514458 TCCTCCAATCCAAAGAAGGC 57.486 50.000 0.00 0.00 0.00 4.35
1298 1392 5.481473 TGAAAATCCTCCAATCCAAAGAAGG 59.519 40.000 0.00 0.00 0.00 3.46
1299 1393 6.015180 TGTGAAAATCCTCCAATCCAAAGAAG 60.015 38.462 0.00 0.00 0.00 2.85
1300 1394 5.837979 TGTGAAAATCCTCCAATCCAAAGAA 59.162 36.000 0.00 0.00 0.00 2.52
1301 1395 5.392995 TGTGAAAATCCTCCAATCCAAAGA 58.607 37.500 0.00 0.00 0.00 2.52
1302 1396 5.337009 CCTGTGAAAATCCTCCAATCCAAAG 60.337 44.000 0.00 0.00 0.00 2.77
1303 1397 4.527816 CCTGTGAAAATCCTCCAATCCAAA 59.472 41.667 0.00 0.00 0.00 3.28
1304 1398 4.088634 CCTGTGAAAATCCTCCAATCCAA 58.911 43.478 0.00 0.00 0.00 3.53
1305 1399 3.333381 TCCTGTGAAAATCCTCCAATCCA 59.667 43.478 0.00 0.00 0.00 3.41
1306 1400 3.968265 TCCTGTGAAAATCCTCCAATCC 58.032 45.455 0.00 0.00 0.00 3.01
1307 1401 6.535963 AAATCCTGTGAAAATCCTCCAATC 57.464 37.500 0.00 0.00 0.00 2.67
1308 1402 6.497954 TGAAAATCCTGTGAAAATCCTCCAAT 59.502 34.615 0.00 0.00 0.00 3.16
1309 1403 5.837979 TGAAAATCCTGTGAAAATCCTCCAA 59.162 36.000 0.00 0.00 0.00 3.53
1310 1404 5.392995 TGAAAATCCTGTGAAAATCCTCCA 58.607 37.500 0.00 0.00 0.00 3.86
1311 1405 5.982890 TGAAAATCCTGTGAAAATCCTCC 57.017 39.130 0.00 0.00 0.00 4.30
1312 1406 6.335777 CCATGAAAATCCTGTGAAAATCCTC 58.664 40.000 0.00 0.00 0.00 3.71
1313 1407 5.188359 CCCATGAAAATCCTGTGAAAATCCT 59.812 40.000 0.00 0.00 0.00 3.24
1314 1408 5.187576 TCCCATGAAAATCCTGTGAAAATCC 59.812 40.000 0.00 0.00 0.00 3.01
1315 1409 6.284891 TCCCATGAAAATCCTGTGAAAATC 57.715 37.500 0.00 0.00 0.00 2.17
1316 1410 6.879367 ATCCCATGAAAATCCTGTGAAAAT 57.121 33.333 0.00 0.00 0.00 1.82
1317 1411 7.618907 TGATATCCCATGAAAATCCTGTGAAAA 59.381 33.333 0.00 0.00 0.00 2.29
1318 1412 7.124721 TGATATCCCATGAAAATCCTGTGAAA 58.875 34.615 0.00 0.00 0.00 2.69
1319 1413 6.671605 TGATATCCCATGAAAATCCTGTGAA 58.328 36.000 0.00 0.00 0.00 3.18
1320 1414 6.264771 TGATATCCCATGAAAATCCTGTGA 57.735 37.500 0.00 0.00 0.00 3.58
1321 1415 6.964807 TTGATATCCCATGAAAATCCTGTG 57.035 37.500 0.00 0.00 0.00 3.66
1322 1416 7.533083 AGATTGATATCCCATGAAAATCCTGT 58.467 34.615 0.00 0.00 0.00 4.00
1323 1417 8.418597 AAGATTGATATCCCATGAAAATCCTG 57.581 34.615 0.00 0.00 0.00 3.86
1324 1418 8.229605 TGAAGATTGATATCCCATGAAAATCCT 58.770 33.333 0.00 0.00 0.00 3.24
1325 1419 8.413309 TGAAGATTGATATCCCATGAAAATCC 57.587 34.615 0.00 0.00 0.00 3.01
1326 1420 8.521176 CCTGAAGATTGATATCCCATGAAAATC 58.479 37.037 0.00 1.35 0.00 2.17
1327 1421 8.229605 TCCTGAAGATTGATATCCCATGAAAAT 58.770 33.333 0.00 0.00 0.00 1.82
1328 1422 7.585440 TCCTGAAGATTGATATCCCATGAAAA 58.415 34.615 0.00 0.00 0.00 2.29
1329 1423 7.152942 TCCTGAAGATTGATATCCCATGAAA 57.847 36.000 0.00 0.00 0.00 2.69
1330 1424 6.768641 TCCTGAAGATTGATATCCCATGAA 57.231 37.500 0.00 0.00 0.00 2.57
1331 1425 6.964876 ATCCTGAAGATTGATATCCCATGA 57.035 37.500 0.00 0.00 0.00 3.07
1357 1451 5.417266 TGATCCAAATGCGTTTCATAGGAAA 59.583 36.000 11.09 0.00 40.57 3.13
1358 1452 4.946772 TGATCCAAATGCGTTTCATAGGAA 59.053 37.500 11.09 0.00 40.57 3.36
1359 1453 4.522114 TGATCCAAATGCGTTTCATAGGA 58.478 39.130 9.83 9.83 41.08 2.94
1360 1454 4.898829 TGATCCAAATGCGTTTCATAGG 57.101 40.909 0.00 0.00 34.33 2.57
1361 1455 5.745294 CCTTTGATCCAAATGCGTTTCATAG 59.255 40.000 0.00 1.77 32.70 2.23
1362 1456 5.417266 TCCTTTGATCCAAATGCGTTTCATA 59.583 36.000 0.00 0.00 32.70 2.15
1363 1457 4.220382 TCCTTTGATCCAAATGCGTTTCAT 59.780 37.500 0.00 0.00 32.70 2.57
1364 1458 3.571828 TCCTTTGATCCAAATGCGTTTCA 59.428 39.130 0.00 0.00 32.70 2.69
1365 1459 4.173036 TCCTTTGATCCAAATGCGTTTC 57.827 40.909 0.00 0.00 32.70 2.78
1366 1460 4.806640 ATCCTTTGATCCAAATGCGTTT 57.193 36.364 0.00 0.00 32.70 3.60
1367 1461 4.497300 CAATCCTTTGATCCAAATGCGTT 58.503 39.130 0.00 0.00 34.60 4.84
1368 1462 3.119029 CCAATCCTTTGATCCAAATGCGT 60.119 43.478 0.00 0.00 34.60 5.24
1369 1463 3.450578 CCAATCCTTTGATCCAAATGCG 58.549 45.455 0.00 0.00 34.60 4.73
1370 1464 3.800531 CCCAATCCTTTGATCCAAATGC 58.199 45.455 0.00 0.00 34.60 3.56
1371 1465 3.432608 GGCCCAATCCTTTGATCCAAATG 60.433 47.826 0.00 0.00 34.60 2.32
1372 1466 2.773661 GGCCCAATCCTTTGATCCAAAT 59.226 45.455 0.00 0.00 34.60 2.32
1373 1467 2.187100 GGCCCAATCCTTTGATCCAAA 58.813 47.619 0.00 0.00 34.60 3.28
1374 1468 1.078490 TGGCCCAATCCTTTGATCCAA 59.922 47.619 0.00 0.00 33.82 3.53
1375 1469 0.709397 TGGCCCAATCCTTTGATCCA 59.291 50.000 0.00 0.00 34.60 3.41
1376 1470 2.092598 ATGGCCCAATCCTTTGATCC 57.907 50.000 0.00 0.00 34.60 3.36
1377 1471 5.612725 TTTAATGGCCCAATCCTTTGATC 57.387 39.130 0.00 0.00 34.60 2.92
1378 1472 6.579850 ATTTTAATGGCCCAATCCTTTGAT 57.420 33.333 0.00 0.00 34.60 2.57
1379 1473 6.385766 AATTTTAATGGCCCAATCCTTTGA 57.614 33.333 0.00 0.00 34.60 2.69
1380 1474 5.589855 GGAATTTTAATGGCCCAATCCTTTG 59.410 40.000 0.00 0.00 0.00 2.77
1381 1475 5.492162 AGGAATTTTAATGGCCCAATCCTTT 59.508 36.000 0.00 0.00 0.00 3.11
1382 1476 5.038962 AGGAATTTTAATGGCCCAATCCTT 58.961 37.500 0.00 0.00 0.00 3.36
1383 1477 4.634411 AGGAATTTTAATGGCCCAATCCT 58.366 39.130 0.00 0.00 0.00 3.24
1384 1478 4.408596 TGAGGAATTTTAATGGCCCAATCC 59.591 41.667 0.00 0.00 0.00 3.01
1385 1479 5.453762 CCTGAGGAATTTTAATGGCCCAATC 60.454 44.000 0.00 0.00 0.00 2.67
1386 1480 4.409901 CCTGAGGAATTTTAATGGCCCAAT 59.590 41.667 0.00 0.00 0.00 3.16
1387 1481 3.774216 CCTGAGGAATTTTAATGGCCCAA 59.226 43.478 0.00 0.00 0.00 4.12
1388 1482 3.012274 TCCTGAGGAATTTTAATGGCCCA 59.988 43.478 0.00 0.00 0.00 5.36
1389 1483 3.642141 TCCTGAGGAATTTTAATGGCCC 58.358 45.455 0.00 0.00 0.00 5.80
1390 1484 5.453762 CCAATCCTGAGGAATTTTAATGGCC 60.454 44.000 4.76 0.00 34.34 5.36
1391 1485 5.453762 CCCAATCCTGAGGAATTTTAATGGC 60.454 44.000 4.76 0.00 34.34 4.40
1392 1486 5.662657 ACCCAATCCTGAGGAATTTTAATGG 59.337 40.000 4.76 5.74 34.34 3.16
1393 1487 6.608808 AGACCCAATCCTGAGGAATTTTAATG 59.391 38.462 4.76 0.00 34.34 1.90
1394 1488 6.745857 AGACCCAATCCTGAGGAATTTTAAT 58.254 36.000 4.76 0.00 34.34 1.40
1395 1489 6.152638 AGACCCAATCCTGAGGAATTTTAA 57.847 37.500 4.76 0.00 34.34 1.52
1396 1490 5.340027 GGAGACCCAATCCTGAGGAATTTTA 60.340 44.000 4.76 0.00 34.34 1.52
1397 1491 4.570719 GGAGACCCAATCCTGAGGAATTTT 60.571 45.833 4.76 0.00 34.34 1.82
1398 1492 3.053320 GGAGACCCAATCCTGAGGAATTT 60.053 47.826 4.76 0.00 34.34 1.82
1399 1493 2.511637 GGAGACCCAATCCTGAGGAATT 59.488 50.000 4.76 0.00 34.34 2.17
1400 1494 2.131023 GGAGACCCAATCCTGAGGAAT 58.869 52.381 4.76 0.00 34.34 3.01
1401 1495 1.203428 TGGAGACCCAATCCTGAGGAA 60.203 52.381 4.76 0.00 40.09 3.36
1402 1496 0.417437 TGGAGACCCAATCCTGAGGA 59.583 55.000 2.43 2.43 40.09 3.71
1403 1497 1.289160 TTGGAGACCCAATCCTGAGG 58.711 55.000 0.00 0.00 46.94 3.86
1412 1506 1.067295 ATCAGCACTTTGGAGACCCA 58.933 50.000 0.00 0.00 41.64 4.51
1413 1507 2.087646 GAATCAGCACTTTGGAGACCC 58.912 52.381 0.00 0.00 0.00 4.46
1414 1508 2.087646 GGAATCAGCACTTTGGAGACC 58.912 52.381 0.00 0.00 0.00 3.85
1415 1509 2.783135 TGGAATCAGCACTTTGGAGAC 58.217 47.619 0.00 0.00 0.00 3.36
1416 1510 3.507162 TTGGAATCAGCACTTTGGAGA 57.493 42.857 0.00 0.00 0.00 3.71
1417 1511 3.057033 CCTTTGGAATCAGCACTTTGGAG 60.057 47.826 0.00 0.00 0.00 3.86
1418 1512 2.892852 CCTTTGGAATCAGCACTTTGGA 59.107 45.455 0.00 0.00 0.00 3.53
1419 1513 2.892852 TCCTTTGGAATCAGCACTTTGG 59.107 45.455 0.00 0.00 0.00 3.28
1420 1514 4.589216 TTCCTTTGGAATCAGCACTTTG 57.411 40.909 0.00 0.00 36.71 2.77
1431 1525 6.074648 ACCTCATGTGTAAATTCCTTTGGAA 58.925 36.000 1.24 1.24 46.39 3.53
1432 1526 5.640147 ACCTCATGTGTAAATTCCTTTGGA 58.360 37.500 0.00 0.00 0.00 3.53
1433 1527 5.105756 GGACCTCATGTGTAAATTCCTTTGG 60.106 44.000 0.00 0.00 0.00 3.28
1434 1528 5.391950 CGGACCTCATGTGTAAATTCCTTTG 60.392 44.000 0.00 0.00 0.00 2.77
1435 1529 4.700213 CGGACCTCATGTGTAAATTCCTTT 59.300 41.667 0.00 0.00 0.00 3.11
1436 1530 4.019681 TCGGACCTCATGTGTAAATTCCTT 60.020 41.667 0.00 0.00 0.00 3.36
1437 1531 3.517901 TCGGACCTCATGTGTAAATTCCT 59.482 43.478 0.00 0.00 0.00 3.36
1438 1532 3.621715 GTCGGACCTCATGTGTAAATTCC 59.378 47.826 0.00 0.00 0.00 3.01
1439 1533 4.504858 AGTCGGACCTCATGTGTAAATTC 58.495 43.478 4.14 0.00 0.00 2.17
1440 1534 4.553330 AGTCGGACCTCATGTGTAAATT 57.447 40.909 4.14 0.00 0.00 1.82
1441 1535 4.223032 AGAAGTCGGACCTCATGTGTAAAT 59.777 41.667 9.28 0.00 0.00 1.40
1442 1536 3.576982 AGAAGTCGGACCTCATGTGTAAA 59.423 43.478 9.28 0.00 0.00 2.01
1443 1537 3.056821 CAGAAGTCGGACCTCATGTGTAA 60.057 47.826 9.28 0.00 0.00 2.41
1444 1538 2.492088 CAGAAGTCGGACCTCATGTGTA 59.508 50.000 9.28 0.00 0.00 2.90
1445 1539 1.273606 CAGAAGTCGGACCTCATGTGT 59.726 52.381 9.28 0.00 0.00 3.72
1446 1540 1.546029 TCAGAAGTCGGACCTCATGTG 59.454 52.381 9.28 0.00 0.00 3.21
1447 1541 1.924731 TCAGAAGTCGGACCTCATGT 58.075 50.000 9.28 0.00 0.00 3.21
1448 1542 3.319137 TTTCAGAAGTCGGACCTCATG 57.681 47.619 9.28 5.10 0.00 3.07
1449 1543 4.351874 TTTTTCAGAAGTCGGACCTCAT 57.648 40.909 9.28 0.00 0.00 2.90
1450 1544 3.830744 TTTTTCAGAAGTCGGACCTCA 57.169 42.857 9.28 0.00 0.00 3.86
1468 1562 6.211184 TGACATAGCCAATTCTGTGGATTTTT 59.789 34.615 0.00 0.00 41.65 1.94
1469 1563 5.716228 TGACATAGCCAATTCTGTGGATTTT 59.284 36.000 0.00 0.00 41.65 1.82
1470 1564 5.263599 TGACATAGCCAATTCTGTGGATTT 58.736 37.500 0.00 0.00 41.65 2.17
1471 1565 4.858850 TGACATAGCCAATTCTGTGGATT 58.141 39.130 0.00 0.00 41.65 3.01
1472 1566 4.508551 TGACATAGCCAATTCTGTGGAT 57.491 40.909 0.00 0.00 41.65 3.41
1473 1567 3.998913 TGACATAGCCAATTCTGTGGA 57.001 42.857 0.00 0.00 41.65 4.02
1474 1568 3.317149 CCATGACATAGCCAATTCTGTGG 59.683 47.826 0.00 0.00 42.05 4.17
1475 1569 3.243301 GCCATGACATAGCCAATTCTGTG 60.243 47.826 0.00 0.00 0.00 3.66
1476 1570 2.954318 GCCATGACATAGCCAATTCTGT 59.046 45.455 0.00 0.00 0.00 3.41
1477 1571 2.953648 TGCCATGACATAGCCAATTCTG 59.046 45.455 3.31 0.00 0.00 3.02
1478 1572 3.301794 TGCCATGACATAGCCAATTCT 57.698 42.857 3.31 0.00 0.00 2.40
1479 1573 4.595762 ATTGCCATGACATAGCCAATTC 57.404 40.909 3.31 0.00 0.00 2.17
1480 1574 6.482898 TTAATTGCCATGACATAGCCAATT 57.517 33.333 17.15 17.15 0.00 2.32
1481 1575 6.482898 TTTAATTGCCATGACATAGCCAAT 57.517 33.333 3.31 3.15 0.00 3.16
1482 1576 5.929058 TTTAATTGCCATGACATAGCCAA 57.071 34.783 3.31 0.99 0.00 4.52
1483 1577 5.010922 GGATTTAATTGCCATGACATAGCCA 59.989 40.000 3.31 0.00 0.00 4.75
1484 1578 5.244626 AGGATTTAATTGCCATGACATAGCC 59.755 40.000 3.31 0.00 0.00 3.93
1485 1579 6.336842 AGGATTTAATTGCCATGACATAGC 57.663 37.500 0.00 0.00 0.00 2.97
1486 1580 6.491062 TGGAGGATTTAATTGCCATGACATAG 59.509 38.462 0.00 0.00 0.00 2.23
1487 1581 6.372104 TGGAGGATTTAATTGCCATGACATA 58.628 36.000 0.00 0.00 0.00 2.29
1488 1582 5.210430 TGGAGGATTTAATTGCCATGACAT 58.790 37.500 0.00 0.00 0.00 3.06
1489 1583 4.608269 TGGAGGATTTAATTGCCATGACA 58.392 39.130 0.00 0.00 0.00 3.58
1490 1584 5.796424 ATGGAGGATTTAATTGCCATGAC 57.204 39.130 0.00 0.00 35.00 3.06
1491 1585 6.811634 AAATGGAGGATTTAATTGCCATGA 57.188 33.333 0.00 0.00 36.34 3.07
1492 1586 7.012610 GGAAAAATGGAGGATTTAATTGCCATG 59.987 37.037 0.00 0.00 36.34 3.66
1493 1587 7.056006 GGAAAAATGGAGGATTTAATTGCCAT 58.944 34.615 0.00 0.00 37.71 4.40
1494 1588 6.215227 AGGAAAAATGGAGGATTTAATTGCCA 59.785 34.615 0.00 0.00 32.76 4.92
1495 1589 6.653020 AGGAAAAATGGAGGATTTAATTGCC 58.347 36.000 0.00 0.00 32.76 4.52
1496 1590 9.836864 AATAGGAAAAATGGAGGATTTAATTGC 57.163 29.630 0.00 0.00 32.76 3.56
1499 1593 9.958125 AGGAATAGGAAAAATGGAGGATTTAAT 57.042 29.630 0.00 0.00 32.76 1.40
1500 1594 9.782900 AAGGAATAGGAAAAATGGAGGATTTAA 57.217 29.630 0.00 0.00 32.76 1.52
1501 1595 9.782900 AAAGGAATAGGAAAAATGGAGGATTTA 57.217 29.630 0.00 0.00 32.76 1.40
1502 1596 8.542926 CAAAGGAATAGGAAAAATGGAGGATTT 58.457 33.333 0.00 0.00 35.65 2.17
1503 1597 7.679881 ACAAAGGAATAGGAAAAATGGAGGATT 59.320 33.333 0.00 0.00 0.00 3.01
1504 1598 7.191918 ACAAAGGAATAGGAAAAATGGAGGAT 58.808 34.615 0.00 0.00 0.00 3.24
1505 1599 6.561294 ACAAAGGAATAGGAAAAATGGAGGA 58.439 36.000 0.00 0.00 0.00 3.71
1506 1600 6.857437 ACAAAGGAATAGGAAAAATGGAGG 57.143 37.500 0.00 0.00 0.00 4.30
1507 1601 8.992073 CAAAACAAAGGAATAGGAAAAATGGAG 58.008 33.333 0.00 0.00 0.00 3.86
1508 1602 7.443879 GCAAAACAAAGGAATAGGAAAAATGGA 59.556 33.333 0.00 0.00 0.00 3.41
1509 1603 7.228308 TGCAAAACAAAGGAATAGGAAAAATGG 59.772 33.333 0.00 0.00 0.00 3.16
1510 1604 8.152309 TGCAAAACAAAGGAATAGGAAAAATG 57.848 30.769 0.00 0.00 0.00 2.32
1511 1605 8.744568 TTGCAAAACAAAGGAATAGGAAAAAT 57.255 26.923 0.00 0.00 34.56 1.82
1512 1606 8.567285 TTTGCAAAACAAAGGAATAGGAAAAA 57.433 26.923 10.02 0.00 43.35 1.94
1526 1620 4.100653 TGGATCACAGGATTTGCAAAACAA 59.899 37.500 17.19 0.00 36.13 2.83
1527 1621 3.640498 TGGATCACAGGATTTGCAAAACA 59.360 39.130 17.19 0.00 32.67 2.83
1528 1622 4.255833 TGGATCACAGGATTTGCAAAAC 57.744 40.909 17.19 13.72 32.67 2.43
1529 1623 4.952071 TTGGATCACAGGATTTGCAAAA 57.048 36.364 17.19 0.00 32.67 2.44
1530 1624 4.588106 TCTTTGGATCACAGGATTTGCAAA 59.412 37.500 15.44 15.44 32.67 3.68
1531 1625 4.151121 TCTTTGGATCACAGGATTTGCAA 58.849 39.130 0.00 0.00 32.67 4.08
1532 1626 3.765381 TCTTTGGATCACAGGATTTGCA 58.235 40.909 0.00 0.00 32.67 4.08
1533 1627 4.741342 CTTCTTTGGATCACAGGATTTGC 58.259 43.478 0.00 0.00 32.67 3.68
1534 1628 4.381292 GGCTTCTTTGGATCACAGGATTTG 60.381 45.833 0.00 0.00 32.67 2.32
1535 1629 3.766051 GGCTTCTTTGGATCACAGGATTT 59.234 43.478 0.00 0.00 32.67 2.17
1536 1630 3.359950 GGCTTCTTTGGATCACAGGATT 58.640 45.455 0.00 0.00 32.67 3.01
1537 1631 2.357569 GGGCTTCTTTGGATCACAGGAT 60.358 50.000 0.00 0.00 36.13 3.24
1538 1632 1.004745 GGGCTTCTTTGGATCACAGGA 59.995 52.381 0.00 0.00 0.00 3.86
1539 1633 1.005215 AGGGCTTCTTTGGATCACAGG 59.995 52.381 0.00 0.00 0.00 4.00
1540 1634 2.290514 TGAGGGCTTCTTTGGATCACAG 60.291 50.000 0.00 0.00 0.00 3.66
1541 1635 1.704628 TGAGGGCTTCTTTGGATCACA 59.295 47.619 0.00 0.00 0.00 3.58
1542 1636 2.489722 GTTGAGGGCTTCTTTGGATCAC 59.510 50.000 0.00 0.00 0.00 3.06
1543 1637 2.795329 GTTGAGGGCTTCTTTGGATCA 58.205 47.619 0.00 0.00 0.00 2.92
1544 1638 1.740025 CGTTGAGGGCTTCTTTGGATC 59.260 52.381 0.00 0.00 0.00 3.36
1545 1639 1.614317 CCGTTGAGGGCTTCTTTGGAT 60.614 52.381 0.00 0.00 35.97 3.41
1546 1640 0.250727 CCGTTGAGGGCTTCTTTGGA 60.251 55.000 0.00 0.00 35.97 3.53
1547 1641 0.250727 TCCGTTGAGGGCTTCTTTGG 60.251 55.000 0.00 0.00 41.52 3.28
1548 1642 1.266989 GTTCCGTTGAGGGCTTCTTTG 59.733 52.381 0.00 0.00 41.52 2.77
1549 1643 1.605753 GTTCCGTTGAGGGCTTCTTT 58.394 50.000 0.00 0.00 41.52 2.52
1550 1644 0.602905 CGTTCCGTTGAGGGCTTCTT 60.603 55.000 0.00 0.00 41.52 2.52
1551 1645 1.004918 CGTTCCGTTGAGGGCTTCT 60.005 57.895 0.00 0.00 41.52 2.85
1552 1646 2.033194 CCGTTCCGTTGAGGGCTTC 61.033 63.158 0.00 0.00 41.52 3.86
1553 1647 2.032071 CCGTTCCGTTGAGGGCTT 59.968 61.111 0.00 0.00 41.52 4.35
1554 1648 4.016706 CCCGTTCCGTTGAGGGCT 62.017 66.667 0.00 0.00 41.52 5.19
1555 1649 4.011517 TCCCGTTCCGTTGAGGGC 62.012 66.667 0.00 0.00 43.46 5.19
1556 1650 2.047560 GTCCCGTTCCGTTGAGGG 60.048 66.667 0.00 0.00 45.10 4.30
1557 1651 0.949105 CAAGTCCCGTTCCGTTGAGG 60.949 60.000 0.00 0.00 42.97 3.86
1558 1652 0.949105 CCAAGTCCCGTTCCGTTGAG 60.949 60.000 0.00 0.00 0.00 3.02
1577 1671 0.446616 GACATCTTCGGGGTTTTCGC 59.553 55.000 0.00 0.00 0.00 4.70
1639 1733 1.076187 CCTTCTTCCTTGCCTTTCCCT 59.924 52.381 0.00 0.00 0.00 4.20
1745 1839 1.592131 GTACGTGTTCACCGTGCCA 60.592 57.895 0.00 0.00 39.22 4.92
1749 1843 2.726912 CGCGTACGTGTTCACCGT 60.727 61.111 20.36 0.00 42.06 4.83
1935 2029 1.207089 TCTTCATCGCGAGGTCCATTT 59.793 47.619 21.22 0.00 0.00 2.32
1936 2030 0.824109 TCTTCATCGCGAGGTCCATT 59.176 50.000 21.22 0.00 0.00 3.16
1937 2031 0.103208 GTCTTCATCGCGAGGTCCAT 59.897 55.000 21.22 0.00 0.00 3.41
2055 2149 2.746277 CTGGCCCTAAAGCGCGTT 60.746 61.111 14.19 14.19 0.00 4.84
2509 2612 5.774630 TCCGTACTTTTTGCCCTTTTATTG 58.225 37.500 0.00 0.00 0.00 1.90
2701 2804 3.756082 ACCCCTCTGCCAAATTTCATA 57.244 42.857 0.00 0.00 0.00 2.15
2702 2805 2.629017 ACCCCTCTGCCAAATTTCAT 57.371 45.000 0.00 0.00 0.00 2.57
2826 2934 1.538512 CTCCATGTGTGGTTCTTGCAG 59.461 52.381 0.00 0.00 46.16 4.41
2979 3093 5.773176 GGTTCCATCTTTTGGTCTCCTTTTA 59.227 40.000 0.00 0.00 46.52 1.52
3043 3157 7.238723 ACCCCATATGTAACTTTTCCCAATTTT 59.761 33.333 1.24 0.00 0.00 1.82
3080 3194 2.670148 GCGTTGGATCCTCCCCAGT 61.670 63.158 14.23 0.00 35.03 4.00
3081 3195 1.915078 AAGCGTTGGATCCTCCCCAG 61.915 60.000 14.23 0.00 35.03 4.45
3082 3196 1.923395 AAGCGTTGGATCCTCCCCA 60.923 57.895 14.23 0.00 35.03 4.96
3083 3197 1.452108 CAAGCGTTGGATCCTCCCC 60.452 63.158 14.23 0.00 35.03 4.81
3084 3198 0.462759 CTCAAGCGTTGGATCCTCCC 60.463 60.000 14.23 0.00 35.03 4.30
3085 3199 1.092345 GCTCAAGCGTTGGATCCTCC 61.092 60.000 14.23 2.07 36.96 4.30
3086 3200 0.391661 TGCTCAAGCGTTGGATCCTC 60.392 55.000 14.23 5.40 45.83 3.71
3087 3201 0.254178 ATGCTCAAGCGTTGGATCCT 59.746 50.000 14.23 0.00 45.83 3.24
3088 3202 2.785868 ATGCTCAAGCGTTGGATCC 58.214 52.632 4.20 4.20 45.83 3.36
3095 3209 2.423538 GGTCCAAATAATGCTCAAGCGT 59.576 45.455 0.00 0.00 45.83 5.07
3096 3210 2.223572 GGGTCCAAATAATGCTCAAGCG 60.224 50.000 0.00 0.00 45.83 4.68
3097 3211 2.101415 GGGGTCCAAATAATGCTCAAGC 59.899 50.000 0.00 0.00 42.50 4.01
3098 3212 3.364549 TGGGGTCCAAATAATGCTCAAG 58.635 45.455 0.00 0.00 0.00 3.02
3099 3213 3.464720 TGGGGTCCAAATAATGCTCAA 57.535 42.857 0.00 0.00 0.00 3.02
3100 3214 3.686227 ATGGGGTCCAAATAATGCTCA 57.314 42.857 0.00 0.00 36.95 4.26
3101 3215 5.140454 ACTAATGGGGTCCAAATAATGCTC 58.860 41.667 0.00 0.00 36.95 4.26
3102 3216 5.140454 GACTAATGGGGTCCAAATAATGCT 58.860 41.667 0.00 0.00 36.95 3.79
3103 3217 4.892934 TGACTAATGGGGTCCAAATAATGC 59.107 41.667 0.00 0.00 36.95 3.56
3104 3218 7.601705 ATTGACTAATGGGGTCCAAATAATG 57.398 36.000 0.00 0.00 36.95 1.90
3105 3219 8.485392 CAAATTGACTAATGGGGTCCAAATAAT 58.515 33.333 0.00 0.00 36.95 1.28
3106 3220 7.093112 CCAAATTGACTAATGGGGTCCAAATAA 60.093 37.037 0.00 0.00 36.95 1.40
3107 3221 6.382570 CCAAATTGACTAATGGGGTCCAAATA 59.617 38.462 0.00 0.00 36.95 1.40
3108 3222 5.189539 CCAAATTGACTAATGGGGTCCAAAT 59.810 40.000 0.00 0.00 36.95 2.32
3109 3223 4.530161 CCAAATTGACTAATGGGGTCCAAA 59.470 41.667 0.00 0.00 36.95 3.28
3110 3224 4.093011 CCAAATTGACTAATGGGGTCCAA 58.907 43.478 0.00 0.00 36.95 3.53
3111 3225 3.076785 ACCAAATTGACTAATGGGGTCCA 59.923 43.478 0.00 0.00 37.26 4.02
3112 3226 3.447229 CACCAAATTGACTAATGGGGTCC 59.553 47.826 0.00 0.00 37.26 4.46
3113 3227 3.119137 GCACCAAATTGACTAATGGGGTC 60.119 47.826 0.00 0.00 38.64 4.46
3114 3228 2.831526 GCACCAAATTGACTAATGGGGT 59.168 45.455 0.00 0.00 38.64 4.95
3115 3229 2.168313 GGCACCAAATTGACTAATGGGG 59.832 50.000 0.00 0.00 39.42 4.96
3116 3230 2.159254 CGGCACCAAATTGACTAATGGG 60.159 50.000 0.00 0.00 37.26 4.00
3117 3231 2.159254 CCGGCACCAAATTGACTAATGG 60.159 50.000 0.00 0.00 38.91 3.16
3118 3232 2.491693 ACCGGCACCAAATTGACTAATG 59.508 45.455 0.00 0.00 0.00 1.90
3119 3233 2.752903 GACCGGCACCAAATTGACTAAT 59.247 45.455 0.00 0.00 0.00 1.73
3120 3234 2.156098 GACCGGCACCAAATTGACTAA 58.844 47.619 0.00 0.00 0.00 2.24
3121 3235 1.349688 AGACCGGCACCAAATTGACTA 59.650 47.619 0.00 0.00 0.00 2.59
3122 3236 0.110486 AGACCGGCACCAAATTGACT 59.890 50.000 0.00 0.00 0.00 3.41
3123 3237 0.521735 GAGACCGGCACCAAATTGAC 59.478 55.000 0.00 0.00 0.00 3.18
3124 3238 0.608035 GGAGACCGGCACCAAATTGA 60.608 55.000 0.00 0.00 0.00 2.57
3125 3239 0.893270 TGGAGACCGGCACCAAATTG 60.893 55.000 0.00 0.00 34.08 2.32
3126 3240 0.039618 ATGGAGACCGGCACCAAATT 59.960 50.000 16.63 0.96 40.75 1.82
3127 3241 0.394352 GATGGAGACCGGCACCAAAT 60.394 55.000 16.63 3.95 40.75 2.32
3128 3242 1.002624 GATGGAGACCGGCACCAAA 60.003 57.895 16.63 0.00 40.75 3.28
3129 3243 2.220586 TGATGGAGACCGGCACCAA 61.221 57.895 16.63 1.59 40.75 3.67
3130 3244 2.606213 TGATGGAGACCGGCACCA 60.606 61.111 15.37 15.37 41.64 4.17
3131 3245 2.125106 GTGATGGAGACCGGCACC 60.125 66.667 0.00 2.82 0.00 5.01
3132 3246 2.509336 CGTGATGGAGACCGGCAC 60.509 66.667 0.00 0.00 0.00 5.01
3133 3247 4.451150 GCGTGATGGAGACCGGCA 62.451 66.667 0.00 0.00 0.00 5.69
3134 3248 2.685387 CTAGCGTGATGGAGACCGGC 62.685 65.000 0.00 0.00 0.00 6.13
3135 3249 1.360551 CTAGCGTGATGGAGACCGG 59.639 63.158 0.00 0.00 0.00 5.28
3136 3250 1.299468 GCTAGCGTGATGGAGACCG 60.299 63.158 0.00 0.00 0.00 4.79
3137 3251 1.299468 CGCTAGCGTGATGGAGACC 60.299 63.158 28.66 0.00 34.35 3.85
3138 3252 0.312416 ATCGCTAGCGTGATGGAGAC 59.688 55.000 34.10 0.00 38.86 3.36
3139 3253 2.720659 ATCGCTAGCGTGATGGAGA 58.279 52.632 34.10 14.90 38.86 3.71
3144 3258 4.018609 GCACATCGCTAGCGTGAT 57.981 55.556 34.10 20.20 40.88 3.06
3161 3275 3.933955 CTGAGGTGAAGATGCTTGAGAAG 59.066 47.826 0.00 0.00 0.00 2.85
3162 3276 3.326006 ACTGAGGTGAAGATGCTTGAGAA 59.674 43.478 0.00 0.00 0.00 2.87
3163 3277 2.902486 ACTGAGGTGAAGATGCTTGAGA 59.098 45.455 0.00 0.00 0.00 3.27
3164 3278 3.001414 CACTGAGGTGAAGATGCTTGAG 58.999 50.000 0.00 0.00 45.61 3.02
3165 3279 2.289882 CCACTGAGGTGAAGATGCTTGA 60.290 50.000 0.00 0.00 45.61 3.02
3166 3280 2.082231 CCACTGAGGTGAAGATGCTTG 58.918 52.381 0.00 0.00 45.61 4.01
3167 3281 1.612726 GCCACTGAGGTGAAGATGCTT 60.613 52.381 0.00 0.00 45.61 3.91
3168 3282 0.035630 GCCACTGAGGTGAAGATGCT 60.036 55.000 0.00 0.00 45.61 3.79
3169 3283 2.475666 GCCACTGAGGTGAAGATGC 58.524 57.895 0.00 0.00 45.61 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.