Multiple sequence alignment - TraesCS1A01G169500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G169500 chr1A 100.000 4276 0 0 1 4276 302201662 302197387 0.000000e+00 7897.0
1 TraesCS1A01G169500 chr1D 90.715 1454 78 24 2842 4265 238468986 238467560 0.000000e+00 1884.0
2 TraesCS1A01G169500 chr1D 87.033 1658 109 45 805 2424 238470901 238469312 0.000000e+00 1773.0
3 TraesCS1A01G169500 chr1D 89.467 769 32 18 24 756 238471649 238470894 0.000000e+00 926.0
4 TraesCS1A01G169500 chr1D 82.432 296 23 10 2484 2752 238469313 238469020 9.250000e-57 231.0
5 TraesCS1A01G169500 chr1B 91.924 1263 75 17 3011 4265 335734618 335735861 0.000000e+00 1742.0
6 TraesCS1A01G169500 chr1B 88.576 1383 79 40 809 2150 335732521 335733865 0.000000e+00 1605.0
7 TraesCS1A01G169500 chr1B 84.828 758 44 28 22 746 335731799 335732518 0.000000e+00 697.0
8 TraesCS1A01G169500 chr1B 92.400 250 18 1 2184 2432 335733874 335734123 5.260000e-94 355.0
9 TraesCS1A01G169500 chr1B 87.726 277 26 5 2486 2760 335734122 335734392 2.480000e-82 316.0
10 TraesCS1A01G169500 chr1B 94.972 179 6 1 2842 3020 335734418 335734593 1.170000e-70 278.0
11 TraesCS1A01G169500 chr2D 92.000 75 3 2 30 103 2600873 2600801 7.560000e-18 102.0
12 TraesCS1A01G169500 chr4B 87.037 54 4 1 55 105 112467514 112467461 1.660000e-04 58.4
13 TraesCS1A01G169500 chr3B 85.000 60 4 3 47 103 782485524 782485467 5.970000e-04 56.5
14 TraesCS1A01G169500 chr2B 100.000 28 0 0 50 77 619757990 619758017 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G169500 chr1A 302197387 302201662 4275 True 7897.000000 7897 100.00000 1 4276 1 chr1A.!!$R1 4275
1 TraesCS1A01G169500 chr1D 238467560 238471649 4089 True 1203.500000 1884 87.41175 24 4265 4 chr1D.!!$R1 4241
2 TraesCS1A01G169500 chr1B 335731799 335735861 4062 False 832.166667 1742 90.07100 22 4265 6 chr1B.!!$F1 4243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 585 0.029834 CAAGCAGCCACACAACAGAC 59.970 55.0 0.00 0.00 0.00 3.51 F
753 815 0.183014 ACCGGATAAGGCGAGAGAGA 59.817 55.0 9.46 0.00 33.69 3.10 F
1576 1695 0.030638 CAAGGAACAACGCCCACTTG 59.969 55.0 0.00 0.00 0.00 3.16 F
1608 1727 0.034616 AGTTCACTGTGCCTGAGCTC 59.965 55.0 6.82 6.82 40.80 4.09 F
2816 2977 0.035739 TAACCGCTGAAGTCCCAACC 59.964 55.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1682 0.108585 ACTGATCAAGTGGGCGTTGT 59.891 50.0 0.0 0.0 37.88 3.32 R
2439 2561 0.314935 CTGCCAAACCGTCTTGCATT 59.685 50.0 0.0 0.0 0.00 3.56 R
2797 2958 0.035739 GGTTGGGACTTCAGCGGTTA 59.964 55.0 0.0 0.0 0.00 2.85 R
2868 3029 0.036732 TCTGTCTGGCCGCTGAAATT 59.963 50.0 0.0 0.0 0.00 1.82 R
4102 4327 0.320683 CAACGAGGATGACAGTGCCA 60.321 55.0 0.0 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.610911 TGTGTGGTGTCATGTTGTGTTA 58.389 40.909 0.00 0.00 0.00 2.41
82 83 0.680280 TAATTTAAAGCCGGGCGCCA 60.680 50.000 30.85 3.80 38.78 5.69
83 84 2.220615 AATTTAAAGCCGGGCGCCAC 62.221 55.000 30.85 17.31 38.78 5.01
132 137 1.507921 CGAACGAGCGAGACGAAATAC 59.492 52.381 0.00 0.00 34.70 1.89
148 161 1.668419 ATACATCAAGCTCGTTGGGC 58.332 50.000 0.00 0.00 36.71 5.36
233 281 6.406177 CCATGTCATTTCTTGGTTTATGGAGG 60.406 42.308 0.00 0.00 35.69 4.30
368 417 5.565592 TTTACTGCACATGGATCATTGTC 57.434 39.130 0.00 0.00 0.00 3.18
410 459 6.029607 TCAATATTCTTTGTCAAATGCTCGC 58.970 36.000 0.00 0.00 0.00 5.03
418 467 1.154225 CAAATGCTCGCCGTCCAAC 60.154 57.895 0.00 0.00 0.00 3.77
430 479 1.590147 GTCCAACGACGATCACCCT 59.410 57.895 0.00 0.00 0.00 4.34
526 581 0.175531 AAACCAAGCAGCCACACAAC 59.824 50.000 0.00 0.00 0.00 3.32
528 583 1.361271 CCAAGCAGCCACACAACAG 59.639 57.895 0.00 0.00 0.00 3.16
529 584 1.102809 CCAAGCAGCCACACAACAGA 61.103 55.000 0.00 0.00 0.00 3.41
530 585 0.029834 CAAGCAGCCACACAACAGAC 59.970 55.000 0.00 0.00 0.00 3.51
531 586 0.394216 AAGCAGCCACACAACAGACA 60.394 50.000 0.00 0.00 0.00 3.41
532 587 1.097547 AGCAGCCACACAACAGACAC 61.098 55.000 0.00 0.00 0.00 3.67
644 699 1.895707 GGCATCAATCAGGGGCTCG 60.896 63.158 0.00 0.00 0.00 5.03
746 808 0.742505 TCTGTACACCGGATAAGGCG 59.257 55.000 9.46 0.00 33.69 5.52
747 809 0.742505 CTGTACACCGGATAAGGCGA 59.257 55.000 9.46 0.00 33.69 5.54
752 814 0.312416 CACCGGATAAGGCGAGAGAG 59.688 60.000 9.46 0.00 33.69 3.20
753 815 0.183014 ACCGGATAAGGCGAGAGAGA 59.817 55.000 9.46 0.00 33.69 3.10
754 816 0.878416 CCGGATAAGGCGAGAGAGAG 59.122 60.000 0.00 0.00 0.00 3.20
755 817 1.543650 CCGGATAAGGCGAGAGAGAGA 60.544 57.143 0.00 0.00 0.00 3.10
756 818 1.804151 CGGATAAGGCGAGAGAGAGAG 59.196 57.143 0.00 0.00 0.00 3.20
757 819 2.549134 CGGATAAGGCGAGAGAGAGAGA 60.549 54.545 0.00 0.00 0.00 3.10
758 820 3.074412 GGATAAGGCGAGAGAGAGAGAG 58.926 54.545 0.00 0.00 0.00 3.20
759 821 3.244422 GGATAAGGCGAGAGAGAGAGAGA 60.244 52.174 0.00 0.00 0.00 3.10
760 822 2.332063 AAGGCGAGAGAGAGAGAGAG 57.668 55.000 0.00 0.00 0.00 3.20
761 823 1.496060 AGGCGAGAGAGAGAGAGAGA 58.504 55.000 0.00 0.00 0.00 3.10
762 824 1.414181 AGGCGAGAGAGAGAGAGAGAG 59.586 57.143 0.00 0.00 0.00 3.20
763 825 1.412710 GGCGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
764 826 2.546795 GGCGAGAGAGAGAGAGAGAGAG 60.547 59.091 0.00 0.00 0.00 3.20
765 827 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
766 828 3.551863 GCGAGAGAGAGAGAGAGAGAGAG 60.552 56.522 0.00 0.00 0.00 3.20
767 829 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
768 830 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
769 831 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
770 832 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
771 833 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
772 834 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
773 835 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
774 836 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
775 837 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
776 838 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
777 839 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
778 840 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
779 841 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
780 842 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
781 843 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
782 844 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
783 845 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
784 846 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
785 847 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
786 848 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
787 849 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
788 850 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
789 851 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
790 852 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
791 853 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
792 854 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
793 855 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
794 856 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
795 857 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
796 858 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
797 859 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
798 860 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
799 861 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
800 862 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
801 863 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
802 864 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
803 865 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
804 866 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
805 867 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
806 868 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
807 869 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
879 947 1.222936 CATCGCCAGCTTCCTCCTT 59.777 57.895 0.00 0.00 0.00 3.36
909 977 2.083774 CTCGCATAGAAAACCCAAGCA 58.916 47.619 0.00 0.00 0.00 3.91
912 980 1.468054 GCATAGAAAACCCAAGCAGCG 60.468 52.381 0.00 0.00 0.00 5.18
913 981 0.811281 ATAGAAAACCCAAGCAGCGC 59.189 50.000 0.00 0.00 0.00 5.92
916 984 2.753931 GAAAACCCAAGCAGCGCTGG 62.754 60.000 36.47 23.11 39.62 4.85
950 1031 2.604011 CTCTTCTTCAGCTGCTTGATCG 59.396 50.000 9.47 2.17 0.00 3.69
952 1033 2.001812 TCTTCAGCTGCTTGATCGAC 57.998 50.000 9.47 0.00 0.00 4.20
954 1035 0.321346 TTCAGCTGCTTGATCGACCA 59.679 50.000 9.47 0.00 0.00 4.02
980 1071 4.504916 CTGGCCTCTCGCACGGAG 62.505 72.222 3.32 0.00 44.58 4.63
987 1078 2.507992 CTCGCACGGAGGAAGCTG 60.508 66.667 0.00 0.00 39.22 4.24
988 1079 4.742201 TCGCACGGAGGAAGCTGC 62.742 66.667 0.00 0.00 0.00 5.25
1016 1107 3.147595 CATGGAGGCCGAGGACGA 61.148 66.667 0.00 0.00 42.66 4.20
1075 1166 2.202395 TTCAAGGGCAGGCAAGTGC 61.202 57.895 0.00 0.00 43.19 4.40
1128 1227 0.252696 TGGATGGTGTAGGTGGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
1132 1231 2.670148 GGTGTAGGTGGAGCTGGGG 61.670 68.421 0.00 0.00 0.00 4.96
1165 1264 1.588667 CTTTTGGTGTGCGTGTGCC 60.589 57.895 0.00 0.00 41.78 5.01
1205 1304 2.573340 CATTTGGTGAAGGCGGCC 59.427 61.111 12.11 12.11 0.00 6.13
1335 1451 3.960313 AGGTTCCCCTCCCTGCCT 61.960 66.667 0.00 0.00 35.62 4.75
1336 1452 3.732849 GGTTCCCCTCCCTGCCTG 61.733 72.222 0.00 0.00 0.00 4.85
1337 1453 3.732849 GTTCCCCTCCCTGCCTGG 61.733 72.222 0.00 0.00 0.00 4.45
1347 1463 4.064768 CTGCCTGGCCCCATTCCA 62.065 66.667 17.53 0.00 0.00 3.53
1348 1464 3.357952 TGCCTGGCCCCATTCCAT 61.358 61.111 17.53 0.00 32.37 3.41
1349 1465 2.522680 GCCTGGCCCCATTCCATC 60.523 66.667 7.66 0.00 32.37 3.51
1350 1466 3.078843 GCCTGGCCCCATTCCATCT 62.079 63.158 7.66 0.00 32.37 2.90
1352 1468 1.152368 CTGGCCCCATTCCATCTCC 59.848 63.158 0.00 0.00 32.37 3.71
1354 1470 1.355718 TGGCCCCATTCCATCTCCTC 61.356 60.000 0.00 0.00 0.00 3.71
1355 1471 1.072159 GCCCCATTCCATCTCCTCG 59.928 63.158 0.00 0.00 0.00 4.63
1356 1472 1.700042 GCCCCATTCCATCTCCTCGT 61.700 60.000 0.00 0.00 0.00 4.18
1357 1473 0.839946 CCCCATTCCATCTCCTCGTT 59.160 55.000 0.00 0.00 0.00 3.85
1358 1474 1.202698 CCCCATTCCATCTCCTCGTTC 60.203 57.143 0.00 0.00 0.00 3.95
1359 1475 1.202698 CCCATTCCATCTCCTCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
1360 1476 1.765314 CCATTCCATCTCCTCGTTCCT 59.235 52.381 0.00 0.00 0.00 3.36
1361 1477 2.224161 CCATTCCATCTCCTCGTTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
1362 1478 1.486211 TTCCATCTCCTCGTTCCTCC 58.514 55.000 0.00 0.00 0.00 4.30
1363 1479 0.335019 TCCATCTCCTCGTTCCTCCA 59.665 55.000 0.00 0.00 0.00 3.86
1364 1480 1.062886 TCCATCTCCTCGTTCCTCCAT 60.063 52.381 0.00 0.00 0.00 3.41
1365 1481 2.177016 TCCATCTCCTCGTTCCTCCATA 59.823 50.000 0.00 0.00 0.00 2.74
1366 1482 2.297597 CCATCTCCTCGTTCCTCCATAC 59.702 54.545 0.00 0.00 0.00 2.39
1367 1483 1.676746 TCTCCTCGTTCCTCCATACG 58.323 55.000 0.00 0.00 39.03 3.06
1422 1538 2.699768 CGCCGGCATTGTGTGGAAT 61.700 57.895 28.98 0.00 0.00 3.01
1434 1550 1.814169 GTGGAATCCGCCGACTTCC 60.814 63.158 0.36 9.77 39.13 3.46
1561 1680 6.035070 CACAACTTGCATTACAAAACAAGG 57.965 37.500 6.55 0.00 42.97 3.61
1563 1682 6.312426 CACAACTTGCATTACAAAACAAGGAA 59.688 34.615 6.55 0.00 42.97 3.36
1564 1683 6.312672 ACAACTTGCATTACAAAACAAGGAAC 59.687 34.615 6.55 0.00 42.97 3.62
1565 1684 5.971763 ACTTGCATTACAAAACAAGGAACA 58.028 33.333 6.55 0.00 42.97 3.18
1567 1686 6.312672 ACTTGCATTACAAAACAAGGAACAAC 59.687 34.615 6.55 0.00 42.97 3.32
1568 1687 4.800993 TGCATTACAAAACAAGGAACAACG 59.199 37.500 0.00 0.00 0.00 4.10
1569 1688 4.317769 GCATTACAAAACAAGGAACAACGC 60.318 41.667 0.00 0.00 0.00 4.84
1570 1689 2.287393 ACAAAACAAGGAACAACGCC 57.713 45.000 0.00 0.00 0.00 5.68
1571 1690 1.134936 ACAAAACAAGGAACAACGCCC 60.135 47.619 0.00 0.00 0.00 6.13
1572 1691 1.134965 CAAAACAAGGAACAACGCCCA 60.135 47.619 0.00 0.00 0.00 5.36
1573 1692 0.458260 AAACAAGGAACAACGCCCAC 59.542 50.000 0.00 0.00 0.00 4.61
1574 1693 0.395173 AACAAGGAACAACGCCCACT 60.395 50.000 0.00 0.00 0.00 4.00
1575 1694 0.395173 ACAAGGAACAACGCCCACTT 60.395 50.000 0.00 0.00 0.00 3.16
1576 1695 0.030638 CAAGGAACAACGCCCACTTG 59.969 55.000 0.00 0.00 0.00 3.16
1577 1696 0.106918 AAGGAACAACGCCCACTTGA 60.107 50.000 0.00 0.00 0.00 3.02
1578 1697 0.110486 AGGAACAACGCCCACTTGAT 59.890 50.000 0.00 0.00 0.00 2.57
1580 1699 1.234821 GAACAACGCCCACTTGATCA 58.765 50.000 0.00 0.00 0.00 2.92
1581 1700 1.197721 GAACAACGCCCACTTGATCAG 59.802 52.381 0.00 0.00 0.00 2.90
1583 1702 1.346395 ACAACGCCCACTTGATCAGTA 59.654 47.619 0.00 0.00 32.76 2.74
1584 1703 2.027192 ACAACGCCCACTTGATCAGTAT 60.027 45.455 0.00 0.00 32.76 2.12
1586 1705 1.831106 ACGCCCACTTGATCAGTATCA 59.169 47.619 0.00 0.00 40.43 2.15
1590 1709 4.063689 GCCCACTTGATCAGTATCATCAG 58.936 47.826 0.00 0.00 41.73 2.90
1592 1711 5.678583 CCCACTTGATCAGTATCATCAGTT 58.321 41.667 0.00 0.00 41.73 3.16
1593 1712 5.757320 CCCACTTGATCAGTATCATCAGTTC 59.243 44.000 0.00 0.00 41.73 3.01
1594 1713 6.343703 CCACTTGATCAGTATCATCAGTTCA 58.656 40.000 0.00 0.00 41.73 3.18
1595 1714 6.257411 CCACTTGATCAGTATCATCAGTTCAC 59.743 42.308 0.00 0.00 41.73 3.18
1596 1715 7.040494 CACTTGATCAGTATCATCAGTTCACT 58.960 38.462 0.00 0.00 41.73 3.41
1597 1716 7.010275 CACTTGATCAGTATCATCAGTTCACTG 59.990 40.741 0.02 0.02 41.73 3.66
1598 1717 6.535963 TGATCAGTATCATCAGTTCACTGT 57.464 37.500 6.84 0.00 39.76 3.55
1599 1718 6.335777 TGATCAGTATCATCAGTTCACTGTG 58.664 40.000 6.84 0.17 39.76 3.66
1600 1719 4.498241 TCAGTATCATCAGTTCACTGTGC 58.502 43.478 2.12 0.00 44.12 4.57
1601 1720 3.620374 CAGTATCATCAGTTCACTGTGCC 59.380 47.826 2.12 0.00 44.12 5.01
1602 1721 3.517100 AGTATCATCAGTTCACTGTGCCT 59.483 43.478 2.12 0.00 44.12 4.75
1603 1722 2.174363 TCATCAGTTCACTGTGCCTG 57.826 50.000 16.42 16.42 44.12 4.85
1604 1723 1.693606 TCATCAGTTCACTGTGCCTGA 59.306 47.619 23.07 23.07 44.12 3.86
1605 1724 2.074576 CATCAGTTCACTGTGCCTGAG 58.925 52.381 24.18 16.58 44.12 3.35
1606 1725 0.250038 TCAGTTCACTGTGCCTGAGC 60.250 55.000 19.42 0.71 44.12 4.26
1607 1726 0.250209 CAGTTCACTGTGCCTGAGCT 60.250 55.000 17.19 0.00 39.09 4.09
1608 1727 0.034616 AGTTCACTGTGCCTGAGCTC 59.965 55.000 6.82 6.82 40.80 4.09
1609 1728 0.952984 GTTCACTGTGCCTGAGCTCC 60.953 60.000 12.15 0.00 40.80 4.70
1610 1729 1.123861 TTCACTGTGCCTGAGCTCCT 61.124 55.000 12.15 0.00 40.80 3.69
1611 1730 1.079266 CACTGTGCCTGAGCTCCTC 60.079 63.158 12.15 0.40 40.80 3.71
1612 1731 1.534959 ACTGTGCCTGAGCTCCTCA 60.535 57.895 12.15 3.32 40.80 3.86
1650 1769 3.133691 TGATCAGTTCACTGTGCTTGAC 58.866 45.455 2.12 0.00 44.12 3.18
1735 1854 4.947147 TGGACAACCGTGCTGCCC 62.947 66.667 0.00 0.00 39.42 5.36
1741 1860 3.925630 AACCGTGCTGCCCATCTGG 62.926 63.158 0.00 0.00 37.09 3.86
1774 1893 1.188863 TAACCCTCTGACTTACCCGC 58.811 55.000 0.00 0.00 0.00 6.13
1778 1898 1.139095 CTCTGACTTACCCGCCGAC 59.861 63.158 0.00 0.00 0.00 4.79
1800 1920 6.018994 CGACGCCTAAGATAACTTGCTTAATT 60.019 38.462 0.00 0.00 37.53 1.40
1804 1924 8.276325 CGCCTAAGATAACTTGCTTAATTAGTG 58.724 37.037 0.00 0.00 37.53 2.74
1805 1925 9.326413 GCCTAAGATAACTTGCTTAATTAGTGA 57.674 33.333 0.00 0.00 37.53 3.41
1889 2009 2.424557 CACTCTGCTGATTTGCTGTCT 58.575 47.619 0.00 0.00 34.27 3.41
1994 2114 4.509230 CCAACAGTGTCCATCTATGATTCG 59.491 45.833 0.00 0.00 0.00 3.34
1999 2119 4.651503 AGTGTCCATCTATGATTCGTTCCT 59.348 41.667 0.00 0.00 0.00 3.36
2044 2164 8.705594 TCTGCTAGTACTGCTATTTTCCTAATT 58.294 33.333 5.39 0.00 0.00 1.40
2113 2233 2.622436 GGCATTCTCACAGGTACTCAC 58.378 52.381 0.00 0.00 34.60 3.51
2123 2243 3.002656 CACAGGTACTCACAGCACTTTTG 59.997 47.826 0.00 0.00 34.60 2.44
2124 2244 3.206150 CAGGTACTCACAGCACTTTTGT 58.794 45.455 0.00 0.00 34.60 2.83
2154 2274 9.463443 GTCATTAGCTTTGACAAATGTTAACTT 57.537 29.630 19.24 0.00 42.43 2.66
2156 2276 9.248291 CATTAGCTTTGACAAATGTTAACTTGT 57.752 29.630 11.76 11.76 38.46 3.16
2159 2279 8.628882 AGCTTTGACAAATGTTAACTTGTAAC 57.371 30.769 11.87 3.79 35.93 2.50
2160 2280 7.431084 AGCTTTGACAAATGTTAACTTGTAACG 59.569 33.333 11.87 7.25 35.93 3.18
2161 2281 7.219344 GCTTTGACAAATGTTAACTTGTAACGT 59.781 33.333 11.87 0.00 35.93 3.99
2162 2282 7.956508 TTGACAAATGTTAACTTGTAACGTG 57.043 32.000 11.87 0.90 35.93 4.49
2163 2283 7.074507 TGACAAATGTTAACTTGTAACGTGT 57.925 32.000 11.87 3.54 35.93 4.49
2164 2284 7.528307 TGACAAATGTTAACTTGTAACGTGTT 58.472 30.769 11.87 0.00 35.93 3.32
2165 2285 8.663025 TGACAAATGTTAACTTGTAACGTGTTA 58.337 29.630 11.87 0.00 35.93 2.41
2166 2286 9.654417 GACAAATGTTAACTTGTAACGTGTTAT 57.346 29.630 11.87 0.00 35.93 1.89
2223 2343 2.959030 CACATGGAGGATAGACCGAAGA 59.041 50.000 0.00 0.00 44.74 2.87
2228 2348 5.320488 TGGAGGATAGACCGAAGATTCTA 57.680 43.478 0.00 0.00 44.74 2.10
2305 2425 2.939103 CTCCAAGCAAGAGAATTACCGG 59.061 50.000 0.00 0.00 32.86 5.28
2306 2426 1.401905 CCAAGCAAGAGAATTACCGGC 59.598 52.381 0.00 0.00 0.00 6.13
2311 2431 1.670811 CAAGAGAATTACCGGCGCATT 59.329 47.619 10.83 0.00 0.00 3.56
2368 2488 0.109153 TGTGCAACATCAGTCTGCCT 59.891 50.000 0.00 0.00 45.67 4.75
2412 2534 6.358118 TGTTCTATGTTAAATGCATCGACC 57.642 37.500 0.00 0.00 0.00 4.79
2428 2550 3.764218 TCGACCCTTATGATCTACTCCC 58.236 50.000 0.00 0.00 0.00 4.30
2429 2551 3.398292 TCGACCCTTATGATCTACTCCCT 59.602 47.826 0.00 0.00 0.00 4.20
2431 2553 4.589374 CGACCCTTATGATCTACTCCCTTT 59.411 45.833 0.00 0.00 0.00 3.11
2432 2554 5.509840 CGACCCTTATGATCTACTCCCTTTG 60.510 48.000 0.00 0.00 0.00 2.77
2433 2555 5.289510 ACCCTTATGATCTACTCCCTTTGT 58.710 41.667 0.00 0.00 0.00 2.83
2434 2556 5.731678 ACCCTTATGATCTACTCCCTTTGTT 59.268 40.000 0.00 0.00 0.00 2.83
2435 2557 6.126739 ACCCTTATGATCTACTCCCTTTGTTC 60.127 42.308 0.00 0.00 0.00 3.18
2436 2558 6.292150 CCTTATGATCTACTCCCTTTGTTCC 58.708 44.000 0.00 0.00 0.00 3.62
2437 2559 6.100424 CCTTATGATCTACTCCCTTTGTTCCT 59.900 42.308 0.00 0.00 0.00 3.36
2438 2560 7.290248 CCTTATGATCTACTCCCTTTGTTCCTA 59.710 40.741 0.00 0.00 0.00 2.94
2439 2561 8.618240 TTATGATCTACTCCCTTTGTTCCTAA 57.382 34.615 0.00 0.00 0.00 2.69
2440 2562 6.945636 TGATCTACTCCCTTTGTTCCTAAA 57.054 37.500 0.00 0.00 0.00 1.85
2441 2563 7.510675 TGATCTACTCCCTTTGTTCCTAAAT 57.489 36.000 0.00 0.00 0.00 1.40
2442 2564 7.338710 TGATCTACTCCCTTTGTTCCTAAATG 58.661 38.462 0.00 0.00 0.00 2.32
2443 2565 5.497474 TCTACTCCCTTTGTTCCTAAATGC 58.503 41.667 0.00 0.00 0.00 3.56
2444 2566 4.112634 ACTCCCTTTGTTCCTAAATGCA 57.887 40.909 0.00 0.00 0.00 3.96
2445 2567 4.479158 ACTCCCTTTGTTCCTAAATGCAA 58.521 39.130 0.00 0.00 0.00 4.08
2446 2568 4.524328 ACTCCCTTTGTTCCTAAATGCAAG 59.476 41.667 0.00 0.00 0.00 4.01
2447 2569 4.735369 TCCCTTTGTTCCTAAATGCAAGA 58.265 39.130 0.00 0.00 0.00 3.02
2448 2570 4.522789 TCCCTTTGTTCCTAAATGCAAGAC 59.477 41.667 0.00 0.00 0.00 3.01
2449 2571 4.475944 CCTTTGTTCCTAAATGCAAGACG 58.524 43.478 0.00 0.00 0.00 4.18
2450 2572 4.475944 CTTTGTTCCTAAATGCAAGACGG 58.524 43.478 0.00 0.00 0.00 4.79
2451 2573 3.134574 TGTTCCTAAATGCAAGACGGT 57.865 42.857 0.00 0.00 0.00 4.83
2452 2574 3.482436 TGTTCCTAAATGCAAGACGGTT 58.518 40.909 0.00 0.00 0.00 4.44
2453 2575 3.886505 TGTTCCTAAATGCAAGACGGTTT 59.113 39.130 0.00 0.00 0.00 3.27
2454 2576 4.226761 GTTCCTAAATGCAAGACGGTTTG 58.773 43.478 0.00 0.00 0.00 2.93
2455 2577 2.817258 TCCTAAATGCAAGACGGTTTGG 59.183 45.455 0.00 0.00 0.00 3.28
2456 2578 2.595386 CTAAATGCAAGACGGTTTGGC 58.405 47.619 0.00 0.00 0.00 4.52
2457 2579 0.749649 AAATGCAAGACGGTTTGGCA 59.250 45.000 2.92 2.92 0.00 4.92
2458 2580 0.314935 AATGCAAGACGGTTTGGCAG 59.685 50.000 6.87 0.00 0.00 4.85
2459 2581 0.823356 ATGCAAGACGGTTTGGCAGT 60.823 50.000 6.87 0.00 0.00 4.40
2460 2582 1.034838 TGCAAGACGGTTTGGCAGTT 61.035 50.000 0.00 0.00 0.00 3.16
2461 2583 0.317854 GCAAGACGGTTTGGCAGTTC 60.318 55.000 0.00 0.00 0.00 3.01
2462 2584 1.021202 CAAGACGGTTTGGCAGTTCA 58.979 50.000 0.00 0.00 0.00 3.18
2463 2585 1.403679 CAAGACGGTTTGGCAGTTCAA 59.596 47.619 0.00 0.00 0.00 2.69
2464 2586 1.021968 AGACGGTTTGGCAGTTCAAC 58.978 50.000 0.00 0.00 0.00 3.18
2465 2587 0.736053 GACGGTTTGGCAGTTCAACA 59.264 50.000 2.56 0.00 0.00 3.33
2466 2588 1.336755 GACGGTTTGGCAGTTCAACAT 59.663 47.619 2.56 0.00 0.00 2.71
2467 2589 1.754226 ACGGTTTGGCAGTTCAACATT 59.246 42.857 2.56 0.00 0.00 2.71
2468 2590 2.167487 ACGGTTTGGCAGTTCAACATTT 59.833 40.909 2.56 0.00 0.00 2.32
2469 2591 3.381908 ACGGTTTGGCAGTTCAACATTTA 59.618 39.130 2.56 0.00 0.00 1.40
2470 2592 3.980775 CGGTTTGGCAGTTCAACATTTAG 59.019 43.478 2.56 0.00 0.00 1.85
2471 2593 4.261405 CGGTTTGGCAGTTCAACATTTAGA 60.261 41.667 2.56 0.00 0.00 2.10
2472 2594 5.596845 GGTTTGGCAGTTCAACATTTAGAA 58.403 37.500 2.56 0.00 0.00 2.10
2473 2595 6.045955 GGTTTGGCAGTTCAACATTTAGAAA 58.954 36.000 2.56 0.00 0.00 2.52
2474 2596 6.019075 GGTTTGGCAGTTCAACATTTAGAAAC 60.019 38.462 2.56 0.00 0.00 2.78
2475 2597 5.843673 TGGCAGTTCAACATTTAGAAACA 57.156 34.783 0.00 0.00 0.00 2.83
2476 2598 5.830912 TGGCAGTTCAACATTTAGAAACAG 58.169 37.500 0.00 0.00 0.00 3.16
2477 2599 5.592282 TGGCAGTTCAACATTTAGAAACAGA 59.408 36.000 0.00 0.00 0.00 3.41
2478 2600 6.145535 GGCAGTTCAACATTTAGAAACAGAG 58.854 40.000 0.00 0.00 0.00 3.35
2479 2601 6.145535 GCAGTTCAACATTTAGAAACAGAGG 58.854 40.000 0.00 0.00 0.00 3.69
2480 2602 6.238759 GCAGTTCAACATTTAGAAACAGAGGT 60.239 38.462 0.00 0.00 0.00 3.85
2481 2603 7.041372 GCAGTTCAACATTTAGAAACAGAGGTA 60.041 37.037 0.00 0.00 0.00 3.08
2482 2604 8.499162 CAGTTCAACATTTAGAAACAGAGGTAG 58.501 37.037 0.00 0.00 0.00 3.18
2483 2605 8.211629 AGTTCAACATTTAGAAACAGAGGTAGT 58.788 33.333 0.00 0.00 0.00 2.73
2484 2606 9.485206 GTTCAACATTTAGAAACAGAGGTAGTA 57.515 33.333 0.00 0.00 0.00 1.82
2496 2618 8.843885 AAACAGAGGTAGTATTTTACTGGAAC 57.156 34.615 0.00 0.00 39.81 3.62
2510 2632 7.562454 TTTACTGGAACGATTTTGAAGTCTT 57.438 32.000 0.00 0.00 0.00 3.01
2517 2639 7.021790 GGAACGATTTTGAAGTCTTAATGACC 58.978 38.462 0.00 0.00 46.46 4.02
2597 2753 9.561069 TGTCTTAAGAATTTCAACTCTAAAGCT 57.439 29.630 6.78 0.00 0.00 3.74
2645 2806 5.964758 TGACCATTTTAATTCAGTGCCATC 58.035 37.500 0.00 0.00 0.00 3.51
2646 2807 5.716228 TGACCATTTTAATTCAGTGCCATCT 59.284 36.000 0.00 0.00 0.00 2.90
2653 2814 4.525912 AATTCAGTGCCATCTTTTCACC 57.474 40.909 0.00 0.00 0.00 4.02
2671 2832 8.506168 TTTTCACCTACTAATTATGCAGAAGG 57.494 34.615 0.00 0.00 0.00 3.46
2695 2856 4.033358 GTCAAGAGGATCACATAAACGCAG 59.967 45.833 0.00 0.00 37.82 5.18
2726 2887 1.135112 GGTCCGGCAATCAAAATGTCC 60.135 52.381 0.00 0.00 0.00 4.02
2744 2905 0.991920 CCCTCCCAAGCTTCAGGTTA 59.008 55.000 11.05 0.00 33.98 2.85
2746 2907 1.680249 CCTCCCAAGCTTCAGGTTAGC 60.680 57.143 11.05 0.00 38.93 3.09
2774 2935 6.628919 TTTAAACCAAACTAGAGAACCTGC 57.371 37.500 0.00 0.00 0.00 4.85
2775 2936 3.857157 AACCAAACTAGAGAACCTGCA 57.143 42.857 0.00 0.00 0.00 4.41
2779 2940 3.937706 CCAAACTAGAGAACCTGCATCTG 59.062 47.826 0.00 0.00 0.00 2.90
2780 2941 2.977772 ACTAGAGAACCTGCATCTGC 57.022 50.000 0.00 0.00 42.50 4.26
2792 2953 2.846039 GCATCTGCATGTTTCTCCAG 57.154 50.000 0.00 0.00 41.59 3.86
2793 2954 2.362736 GCATCTGCATGTTTCTCCAGA 58.637 47.619 0.00 0.00 41.59 3.86
2794 2955 2.751259 GCATCTGCATGTTTCTCCAGAA 59.249 45.455 3.10 0.00 41.59 3.02
2795 2956 3.181499 GCATCTGCATGTTTCTCCAGAAG 60.181 47.826 3.10 0.86 41.59 2.85
2796 2957 4.259356 CATCTGCATGTTTCTCCAGAAGA 58.741 43.478 3.10 0.00 37.80 2.87
2797 2958 4.564782 TCTGCATGTTTCTCCAGAAGAT 57.435 40.909 0.00 0.00 35.21 2.40
2798 2959 5.682234 TCTGCATGTTTCTCCAGAAGATA 57.318 39.130 0.00 0.00 35.21 1.98
2799 2960 6.053632 TCTGCATGTTTCTCCAGAAGATAA 57.946 37.500 0.00 0.00 35.21 1.75
2800 2961 5.877012 TCTGCATGTTTCTCCAGAAGATAAC 59.123 40.000 0.00 0.00 35.21 1.89
2801 2962 4.943705 TGCATGTTTCTCCAGAAGATAACC 59.056 41.667 0.00 0.00 35.21 2.85
2802 2963 4.034510 GCATGTTTCTCCAGAAGATAACCG 59.965 45.833 0.00 0.00 35.21 4.44
2803 2964 3.596214 TGTTTCTCCAGAAGATAACCGC 58.404 45.455 0.00 0.00 35.21 5.68
2804 2965 3.260884 TGTTTCTCCAGAAGATAACCGCT 59.739 43.478 0.00 0.00 35.21 5.52
2805 2966 3.526931 TTCTCCAGAAGATAACCGCTG 57.473 47.619 0.00 0.00 32.82 5.18
2806 2967 2.735151 TCTCCAGAAGATAACCGCTGA 58.265 47.619 0.00 0.00 0.00 4.26
2807 2968 3.096852 TCTCCAGAAGATAACCGCTGAA 58.903 45.455 0.00 0.00 0.00 3.02
2808 2969 3.131223 TCTCCAGAAGATAACCGCTGAAG 59.869 47.826 0.00 0.00 0.00 3.02
2809 2970 2.832129 TCCAGAAGATAACCGCTGAAGT 59.168 45.455 0.00 0.00 0.00 3.01
2810 2971 3.119101 TCCAGAAGATAACCGCTGAAGTC 60.119 47.826 0.00 0.00 0.00 3.01
2811 2972 3.190874 CAGAAGATAACCGCTGAAGTCC 58.809 50.000 0.00 0.00 0.00 3.85
2812 2973 2.168728 AGAAGATAACCGCTGAAGTCCC 59.831 50.000 0.00 0.00 0.00 4.46
2813 2974 1.568504 AGATAACCGCTGAAGTCCCA 58.431 50.000 0.00 0.00 0.00 4.37
2814 2975 1.906574 AGATAACCGCTGAAGTCCCAA 59.093 47.619 0.00 0.00 0.00 4.12
2815 2976 2.007608 GATAACCGCTGAAGTCCCAAC 58.992 52.381 0.00 0.00 0.00 3.77
2816 2977 0.035739 TAACCGCTGAAGTCCCAACC 59.964 55.000 0.00 0.00 0.00 3.77
2817 2978 1.990160 AACCGCTGAAGTCCCAACCA 61.990 55.000 0.00 0.00 0.00 3.67
2818 2979 1.228124 CCGCTGAAGTCCCAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
2819 2980 0.609131 CCGCTGAAGTCCCAACCAAT 60.609 55.000 0.00 0.00 0.00 3.16
2820 2981 0.523072 CGCTGAAGTCCCAACCAATG 59.477 55.000 0.00 0.00 0.00 2.82
2821 2982 0.244721 GCTGAAGTCCCAACCAATGC 59.755 55.000 0.00 0.00 0.00 3.56
2822 2983 0.890683 CTGAAGTCCCAACCAATGCC 59.109 55.000 0.00 0.00 0.00 4.40
2823 2984 0.482446 TGAAGTCCCAACCAATGCCT 59.518 50.000 0.00 0.00 0.00 4.75
2824 2985 0.890683 GAAGTCCCAACCAATGCCTG 59.109 55.000 0.00 0.00 0.00 4.85
2825 2986 1.187567 AAGTCCCAACCAATGCCTGC 61.188 55.000 0.00 0.00 0.00 4.85
2826 2987 1.907807 GTCCCAACCAATGCCTGCA 60.908 57.895 0.00 0.00 0.00 4.41
2827 2988 1.907807 TCCCAACCAATGCCTGCAC 60.908 57.895 0.00 0.00 0.00 4.57
2828 2989 2.208619 CCCAACCAATGCCTGCACA 61.209 57.895 0.00 0.00 0.00 4.57
2829 2990 1.747145 CCAACCAATGCCTGCACAA 59.253 52.632 0.00 0.00 0.00 3.33
2830 2991 0.320073 CCAACCAATGCCTGCACAAG 60.320 55.000 0.00 0.00 0.00 3.16
2868 3029 2.938451 CTGAACTGAACTTGTGCTGTGA 59.062 45.455 0.00 0.00 0.00 3.58
2987 3148 4.321750 CCTCTGATGCACATTGCTCTTTTT 60.322 41.667 0.00 0.00 45.31 1.94
3009 3170 5.957842 TTTATGTGCCTTTCTAACCACAG 57.042 39.130 0.00 0.00 40.99 3.66
3084 3279 0.879090 CCCTAAAACCGCTGAACCAC 59.121 55.000 0.00 0.00 0.00 4.16
3103 3298 0.036952 CAGGAGTGTTCTGACGGCAT 60.037 55.000 0.00 0.00 34.36 4.40
3122 3317 1.375908 GAACAGCAGCACCGGATCA 60.376 57.895 9.46 0.00 0.00 2.92
3123 3318 0.745845 GAACAGCAGCACCGGATCAT 60.746 55.000 9.46 0.00 0.00 2.45
3124 3319 0.745845 AACAGCAGCACCGGATCATC 60.746 55.000 9.46 0.00 0.00 2.92
3125 3320 2.107750 AGCAGCACCGGATCATCG 59.892 61.111 9.46 0.00 0.00 3.84
3142 3337 0.946700 TCGGATTCAGACGCGCAAAA 60.947 50.000 5.73 0.00 0.00 2.44
3143 3338 0.110419 CGGATTCAGACGCGCAAAAA 60.110 50.000 5.73 0.00 0.00 1.94
3230 3425 0.096281 TCGATGCGCCGAAAATTGTC 59.904 50.000 4.18 0.00 35.42 3.18
3269 3467 4.941713 AGAAGGAAGTCAGATACTCCAGT 58.058 43.478 0.00 0.00 37.50 4.00
3284 3484 3.133721 ACTCCAGTACCTGAATCTCATGC 59.866 47.826 0.00 0.00 32.44 4.06
3287 3487 3.201290 CAGTACCTGAATCTCATGCCAC 58.799 50.000 0.00 0.00 32.44 5.01
3307 3507 2.154462 CACCATGGTTCAGAAGACACC 58.846 52.381 16.84 0.00 0.00 4.16
3310 3510 1.808945 CATGGTTCAGAAGACACCAGC 59.191 52.381 0.00 0.00 43.88 4.85
3332 3537 4.625800 GCCAGTAGACTTGGGCAG 57.374 61.111 6.23 0.00 45.70 4.85
3380 3589 5.700832 TGTTCATAGGTTGCAAGTAAGACTG 59.299 40.000 0.00 0.00 0.00 3.51
3395 3604 1.206610 AGACTGTGCAGCTGGATACTG 59.793 52.381 17.12 8.42 38.22 2.74
3419 3628 3.008835 AGCCTGCTTGCTGAATTCATA 57.991 42.857 8.96 0.00 40.90 2.15
3501 3710 9.419297 CAGAACATTTGCAGTTACTAGTAGTAA 57.581 33.333 17.12 17.12 38.28 2.24
3523 3732 8.512138 AGTAATACAAAATATGGGCGAATTAGC 58.488 33.333 1.35 1.35 0.00 3.09
3524 3733 6.892658 ATACAAAATATGGGCGAATTAGCA 57.107 33.333 12.78 0.00 39.27 3.49
3525 3734 5.186996 ACAAAATATGGGCGAATTAGCAG 57.813 39.130 12.78 0.00 39.27 4.24
3526 3735 4.887071 ACAAAATATGGGCGAATTAGCAGA 59.113 37.500 12.78 0.00 39.27 4.26
3527 3736 5.536161 ACAAAATATGGGCGAATTAGCAGAT 59.464 36.000 12.78 5.93 39.27 2.90
3528 3737 6.714810 ACAAAATATGGGCGAATTAGCAGATA 59.285 34.615 12.78 7.81 39.27 1.98
3548 3757 8.499162 GCAGATAAGATATACACGAAAAGCAAT 58.501 33.333 0.00 0.00 0.00 3.56
3608 3817 5.414360 TCAGAATAACAGAGTCACTCATGC 58.586 41.667 7.77 0.00 32.06 4.06
3617 3826 0.884704 GTCACTCATGCACCCAACGT 60.885 55.000 0.00 0.00 0.00 3.99
3684 3893 1.539280 GGCTACTCCTGAATCGGCTTC 60.539 57.143 0.00 0.00 0.00 3.86
3794 4019 1.228063 CATGGCGATGGAGGGAAGG 60.228 63.158 0.00 0.00 0.00 3.46
3834 4059 0.542938 CAGGGGGAGCGGAGATATGA 60.543 60.000 0.00 0.00 0.00 2.15
3838 4063 1.214062 GGAGCGGAGATATGAGGCG 59.786 63.158 0.00 0.00 0.00 5.52
3908 4133 0.036388 TCCGCTGTTCCATCTTCACC 60.036 55.000 0.00 0.00 0.00 4.02
3917 4142 4.162690 ATCTTCACCGGCCCGCTC 62.163 66.667 0.00 0.00 0.00 5.03
4037 4262 4.671590 TGGCTCGACGAGGACCCA 62.672 66.667 25.31 20.26 0.00 4.51
4084 4309 4.504916 CGCGAGCAGAGGGAGGTG 62.505 72.222 0.00 0.00 0.00 4.00
4272 4497 4.101448 CCTTGCGGGGTAGCTGCT 62.101 66.667 7.57 7.57 38.13 4.24
4273 4498 2.045926 CTTGCGGGGTAGCTGCTT 60.046 61.111 7.79 0.00 38.13 3.91
4274 4499 2.046314 TTGCGGGGTAGCTGCTTC 60.046 61.111 7.79 1.68 38.13 3.86
4275 4500 2.527951 CTTGCGGGGTAGCTGCTTCT 62.528 60.000 7.79 0.00 38.13 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.686841 CACAACATGACACCACACAATAAAG 59.313 40.000 0.00 0.00 0.00 1.85
2 3 5.126222 ACACAACATGACACCACACAATAAA 59.874 36.000 0.00 0.00 0.00 1.40
3 4 4.642437 ACACAACATGACACCACACAATAA 59.358 37.500 0.00 0.00 0.00 1.40
4 5 4.203226 ACACAACATGACACCACACAATA 58.797 39.130 0.00 0.00 0.00 1.90
5 6 3.023119 ACACAACATGACACCACACAAT 58.977 40.909 0.00 0.00 0.00 2.71
6 7 2.441410 ACACAACATGACACCACACAA 58.559 42.857 0.00 0.00 0.00 3.33
7 8 2.121291 ACACAACATGACACCACACA 57.879 45.000 0.00 0.00 0.00 3.72
8 9 4.036262 ACATAACACAACATGACACCACAC 59.964 41.667 0.00 0.00 0.00 3.82
9 10 4.203226 ACATAACACAACATGACACCACA 58.797 39.130 0.00 0.00 0.00 4.17
10 11 4.829064 ACATAACACAACATGACACCAC 57.171 40.909 0.00 0.00 0.00 4.16
11 12 4.642437 ACAACATAACACAACATGACACCA 59.358 37.500 0.00 0.00 0.00 4.17
12 13 4.975502 CACAACATAACACAACATGACACC 59.024 41.667 0.00 0.00 0.00 4.16
13 14 5.577835 ACACAACATAACACAACATGACAC 58.422 37.500 0.00 0.00 0.00 3.67
14 15 5.826601 ACACAACATAACACAACATGACA 57.173 34.783 0.00 0.00 0.00 3.58
15 16 6.033341 ACAACACAACATAACACAACATGAC 58.967 36.000 0.00 0.00 0.00 3.06
16 17 6.201226 ACAACACAACATAACACAACATGA 57.799 33.333 0.00 0.00 0.00 3.07
17 18 7.059374 CGATACAACACAACATAACACAACATG 59.941 37.037 0.00 0.00 0.00 3.21
18 19 7.075121 CGATACAACACAACATAACACAACAT 58.925 34.615 0.00 0.00 0.00 2.71
19 20 6.423042 CGATACAACACAACATAACACAACA 58.577 36.000 0.00 0.00 0.00 3.33
20 21 5.338559 GCGATACAACACAACATAACACAAC 59.661 40.000 0.00 0.00 0.00 3.32
21 22 5.237561 AGCGATACAACACAACATAACACAA 59.762 36.000 0.00 0.00 0.00 3.33
22 23 4.752604 AGCGATACAACACAACATAACACA 59.247 37.500 0.00 0.00 0.00 3.72
28 29 2.778299 ACCAGCGATACAACACAACAT 58.222 42.857 0.00 0.00 0.00 2.71
102 106 2.567049 CTCGTTCGTTCCCGCTCT 59.433 61.111 0.00 0.00 0.00 4.09
107 111 1.800713 GTCTCGCTCGTTCGTTCCC 60.801 63.158 0.00 0.00 0.00 3.97
132 137 1.651240 CCAGCCCAACGAGCTTGATG 61.651 60.000 8.31 6.05 38.95 3.07
148 161 3.706594 TCTATCAACCTTGCTAGACCCAG 59.293 47.826 0.00 0.00 32.69 4.45
233 281 4.329462 TTGCCCCACATTACTTTGTTTC 57.671 40.909 0.00 0.00 0.00 2.78
295 344 0.395173 ATGATACCGGGGGTGTTTGC 60.395 55.000 6.32 0.00 36.19 3.68
368 417 4.888038 TTGATTGATTTCTCTGCGGATG 57.112 40.909 0.00 0.00 0.00 3.51
418 467 4.873129 CCGGCAGGGTGATCGTCG 62.873 72.222 0.00 0.00 0.00 5.12
490 545 2.966516 GGTTTGGTTGGGATGGTAAACA 59.033 45.455 0.00 0.00 31.56 2.83
526 581 1.089481 ACGGCACTGTGTTGTGTCTG 61.089 55.000 9.86 0.00 40.09 3.51
528 583 1.641677 GACGGCACTGTGTTGTGTC 59.358 57.895 9.86 8.51 39.89 3.67
529 584 1.817941 GGACGGCACTGTGTTGTGT 60.818 57.895 9.86 3.12 39.89 3.72
530 585 2.542907 GGGACGGCACTGTGTTGTG 61.543 63.158 9.86 0.00 40.62 3.33
531 586 2.203153 GGGACGGCACTGTGTTGT 60.203 61.111 9.86 8.13 0.00 3.32
532 587 1.101049 AAAGGGACGGCACTGTGTTG 61.101 55.000 0.00 4.86 0.00 3.33
628 683 0.533755 GACCGAGCCCCTGATTGATG 60.534 60.000 0.00 0.00 0.00 3.07
644 699 4.176752 GGGCCCCATCGACTGACC 62.177 72.222 12.23 0.00 0.00 4.02
746 808 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
747 809 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
752 814 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
753 815 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
754 816 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
755 817 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
756 818 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
757 819 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
758 820 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
759 821 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
760 822 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
761 823 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
762 824 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
763 825 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
764 826 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
765 827 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
766 828 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
767 829 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
768 830 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
769 831 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
770 832 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
771 833 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
772 834 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
773 835 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
774 836 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
775 837 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
776 838 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
777 839 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
778 840 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
779 841 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
780 842 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
781 843 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
782 844 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
783 845 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
784 846 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
785 847 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
786 848 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
787 849 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
788 850 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
789 851 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
790 852 5.047377 GGATCTCTCTCTCTCTCTCTCTCTC 60.047 52.000 0.00 0.00 0.00 3.20
791 853 4.837860 GGATCTCTCTCTCTCTCTCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
792 854 4.020662 GGGATCTCTCTCTCTCTCTCTCTC 60.021 54.167 0.00 0.00 0.00 3.20
793 855 3.906846 GGGATCTCTCTCTCTCTCTCTCT 59.093 52.174 0.00 0.00 0.00 3.10
794 856 3.008485 GGGGATCTCTCTCTCTCTCTCTC 59.992 56.522 0.00 0.00 0.00 3.20
795 857 2.982488 GGGGATCTCTCTCTCTCTCTCT 59.018 54.545 0.00 0.00 0.00 3.10
796 858 2.982488 AGGGGATCTCTCTCTCTCTCTC 59.018 54.545 0.00 0.00 0.00 3.20
797 859 2.713167 CAGGGGATCTCTCTCTCTCTCT 59.287 54.545 0.00 0.00 0.00 3.10
798 860 2.815589 GCAGGGGATCTCTCTCTCTCTC 60.816 59.091 0.00 0.00 0.00 3.20
799 861 1.145738 GCAGGGGATCTCTCTCTCTCT 59.854 57.143 0.00 0.00 0.00 3.10
800 862 1.133513 TGCAGGGGATCTCTCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
801 863 0.932955 TGCAGGGGATCTCTCTCTCT 59.067 55.000 0.00 0.00 0.00 3.10
802 864 1.039856 GTGCAGGGGATCTCTCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
803 865 0.398381 GGTGCAGGGGATCTCTCTCT 60.398 60.000 0.00 0.00 0.00 3.10
804 866 1.406860 GGGTGCAGGGGATCTCTCTC 61.407 65.000 0.00 0.00 0.00 3.20
805 867 1.383803 GGGTGCAGGGGATCTCTCT 60.384 63.158 0.00 0.00 0.00 3.10
806 868 2.801631 CGGGTGCAGGGGATCTCTC 61.802 68.421 0.00 0.00 0.00 3.20
807 869 2.765807 CGGGTGCAGGGGATCTCT 60.766 66.667 0.00 0.00 0.00 3.10
879 947 1.485124 TCTATGCGAGGAAGGAAGCA 58.515 50.000 0.00 0.00 44.13 3.91
916 984 2.285743 AAGAGCTGGGGAGGGGAC 60.286 66.667 0.00 0.00 0.00 4.46
921 1002 0.107752 GCTGAAGAAGAGCTGGGGAG 60.108 60.000 0.00 0.00 33.37 4.30
923 1004 1.989620 AGCTGAAGAAGAGCTGGGG 59.010 57.895 0.00 0.00 45.28 4.96
941 1022 0.969149 ACTGACTGGTCGATCAAGCA 59.031 50.000 0.00 0.00 0.00 3.91
968 1053 2.202676 GCTTCCTCCGTGCGAGAG 60.203 66.667 0.00 0.00 41.63 3.20
979 1070 0.106819 GATGGATGTGGCAGCTTCCT 60.107 55.000 3.45 7.81 34.77 3.36
980 1071 1.105759 GGATGGATGTGGCAGCTTCC 61.106 60.000 0.00 0.00 34.42 3.46
982 1073 0.260816 ATGGATGGATGTGGCAGCTT 59.739 50.000 0.00 0.00 0.00 3.74
983 1074 0.467474 CATGGATGGATGTGGCAGCT 60.467 55.000 0.00 0.00 0.00 4.24
1050 1141 1.903404 CCTGCCCTTGAACACCCAC 60.903 63.158 0.00 0.00 0.00 4.61
1075 1166 2.503765 GAGAAAAGAAGAGGAGGGGAGG 59.496 54.545 0.00 0.00 0.00 4.30
1076 1167 3.449918 AGAGAAAAGAAGAGGAGGGGAG 58.550 50.000 0.00 0.00 0.00 4.30
1077 1168 3.445987 GAGAGAAAAGAAGAGGAGGGGA 58.554 50.000 0.00 0.00 0.00 4.81
1078 1169 2.503765 GGAGAGAAAAGAAGAGGAGGGG 59.496 54.545 0.00 0.00 0.00 4.79
1079 1170 2.503765 GGGAGAGAAAAGAAGAGGAGGG 59.496 54.545 0.00 0.00 0.00 4.30
1116 1207 2.285368 CCCCCAGCTCCACCTACA 60.285 66.667 0.00 0.00 0.00 2.74
1117 1208 3.798511 GCCCCCAGCTCCACCTAC 61.799 72.222 0.00 0.00 38.99 3.18
1132 1231 1.305930 AAAAGAATCAGTCGCCCGCC 61.306 55.000 0.00 0.00 0.00 6.13
1145 1244 0.179150 GCACACGCACACCAAAAGAA 60.179 50.000 0.00 0.00 38.36 2.52
1165 1264 0.179181 CTGGTACAATGCGCTGCAAG 60.179 55.000 9.73 6.17 43.62 4.01
1307 1406 4.573162 GGAACCTCGTCGAACTGG 57.427 61.111 0.00 0.00 0.00 4.00
1334 1450 1.152368 GGAGATGGAATGGGGCCAG 59.848 63.158 4.39 0.00 39.11 4.85
1335 1451 1.309013 AGGAGATGGAATGGGGCCA 60.309 57.895 4.39 0.00 40.24 5.36
1336 1452 1.458045 GAGGAGATGGAATGGGGCC 59.542 63.158 0.00 0.00 0.00 5.80
1337 1453 1.072159 CGAGGAGATGGAATGGGGC 59.928 63.158 0.00 0.00 0.00 5.80
1340 1456 1.765314 AGGAACGAGGAGATGGAATGG 59.235 52.381 0.00 0.00 0.00 3.16
1341 1457 2.224161 GGAGGAACGAGGAGATGGAATG 60.224 54.545 0.00 0.00 0.00 2.67
1342 1458 2.043227 GGAGGAACGAGGAGATGGAAT 58.957 52.381 0.00 0.00 0.00 3.01
1347 1463 2.231529 CGTATGGAGGAACGAGGAGAT 58.768 52.381 0.00 0.00 41.55 2.75
1348 1464 1.064906 ACGTATGGAGGAACGAGGAGA 60.065 52.381 1.45 0.00 41.55 3.71
1349 1465 1.390565 ACGTATGGAGGAACGAGGAG 58.609 55.000 1.45 0.00 41.55 3.69
1350 1466 1.843368 AACGTATGGAGGAACGAGGA 58.157 50.000 1.45 0.00 41.55 3.71
1352 1468 3.612860 CAGAAAACGTATGGAGGAACGAG 59.387 47.826 1.45 0.00 41.55 4.18
1354 1470 3.367025 GTCAGAAAACGTATGGAGGAACG 59.633 47.826 0.00 0.00 44.47 3.95
1355 1471 3.367025 CGTCAGAAAACGTATGGAGGAAC 59.633 47.826 0.00 0.00 37.86 3.62
1356 1472 3.256383 TCGTCAGAAAACGTATGGAGGAA 59.744 43.478 0.00 0.00 43.08 3.36
1357 1473 2.821378 TCGTCAGAAAACGTATGGAGGA 59.179 45.455 0.00 0.00 43.08 3.71
1358 1474 3.179830 CTCGTCAGAAAACGTATGGAGG 58.820 50.000 0.00 0.00 43.08 4.30
1359 1475 2.599082 GCTCGTCAGAAAACGTATGGAG 59.401 50.000 0.00 0.00 43.08 3.86
1360 1476 2.230508 AGCTCGTCAGAAAACGTATGGA 59.769 45.455 0.00 0.00 43.08 3.41
1361 1477 2.607187 AGCTCGTCAGAAAACGTATGG 58.393 47.619 0.00 0.00 43.08 2.74
1362 1478 4.386230 CAAAGCTCGTCAGAAAACGTATG 58.614 43.478 0.00 0.00 43.08 2.39
1363 1479 3.120649 GCAAAGCTCGTCAGAAAACGTAT 60.121 43.478 0.00 0.00 43.08 3.06
1364 1480 2.220133 GCAAAGCTCGTCAGAAAACGTA 59.780 45.455 0.00 0.00 43.08 3.57
1365 1481 1.003866 GCAAAGCTCGTCAGAAAACGT 60.004 47.619 0.00 0.00 43.08 3.99
1366 1482 1.261619 AGCAAAGCTCGTCAGAAAACG 59.738 47.619 0.00 0.00 43.92 3.60
1367 1483 3.292423 GAAGCAAAGCTCGTCAGAAAAC 58.708 45.455 0.00 0.00 38.25 2.43
1434 1550 2.220455 GAAGAGCAACTCACGCGCAG 62.220 60.000 5.73 4.78 32.06 5.18
1561 1680 1.197721 CTGATCAAGTGGGCGTTGTTC 59.802 52.381 0.00 0.00 0.00 3.18
1563 1682 0.108585 ACTGATCAAGTGGGCGTTGT 59.891 50.000 0.00 0.00 37.88 3.32
1564 1683 2.093306 TACTGATCAAGTGGGCGTTG 57.907 50.000 0.00 0.00 40.26 4.10
1565 1684 2.236146 TGATACTGATCAAGTGGGCGTT 59.764 45.455 0.00 0.00 39.20 4.84
1567 1686 2.602257 TGATACTGATCAAGTGGGCG 57.398 50.000 0.00 0.00 39.20 6.13
1568 1687 4.063689 CTGATGATACTGATCAAGTGGGC 58.936 47.826 0.00 0.00 45.23 5.36
1569 1688 5.287674 ACTGATGATACTGATCAAGTGGG 57.712 43.478 0.00 0.00 45.23 4.61
1570 1689 6.257411 GTGAACTGATGATACTGATCAAGTGG 59.743 42.308 0.00 0.00 45.23 4.00
1571 1690 7.010275 CAGTGAACTGATGATACTGATCAAGTG 59.990 40.741 4.36 0.00 46.59 3.16
1572 1691 7.040494 CAGTGAACTGATGATACTGATCAAGT 58.960 38.462 4.36 0.00 46.59 3.16
1573 1692 7.010275 CACAGTGAACTGATGATACTGATCAAG 59.990 40.741 17.11 0.00 46.59 3.02
1574 1693 6.815142 CACAGTGAACTGATGATACTGATCAA 59.185 38.462 17.11 0.00 46.59 2.57
1575 1694 6.335777 CACAGTGAACTGATGATACTGATCA 58.664 40.000 17.11 0.00 46.59 2.92
1576 1695 5.233902 GCACAGTGAACTGATGATACTGATC 59.766 44.000 17.11 0.00 46.59 2.92
1577 1696 5.114780 GCACAGTGAACTGATGATACTGAT 58.885 41.667 17.11 0.00 46.59 2.90
1578 1697 4.498241 GCACAGTGAACTGATGATACTGA 58.502 43.478 17.11 0.00 46.59 3.41
1580 1699 3.517100 AGGCACAGTGAACTGATGATACT 59.483 43.478 17.11 7.93 46.59 2.12
1581 1700 3.620374 CAGGCACAGTGAACTGATGATAC 59.380 47.826 17.11 6.23 46.59 2.24
1583 1702 2.303890 TCAGGCACAGTGAACTGATGAT 59.696 45.455 19.08 2.58 46.59 2.45
1584 1703 1.693606 TCAGGCACAGTGAACTGATGA 59.306 47.619 19.08 11.44 46.59 2.92
1586 1705 1.610102 GCTCAGGCACAGTGAACTGAT 60.610 52.381 21.72 0.00 46.36 2.90
1590 1709 0.952984 GGAGCTCAGGCACAGTGAAC 60.953 60.000 17.19 0.00 41.70 3.18
1592 1711 1.534959 AGGAGCTCAGGCACAGTGA 60.535 57.895 17.19 0.00 41.70 3.41
1593 1712 1.079266 GAGGAGCTCAGGCACAGTG 60.079 63.158 17.19 0.00 41.70 3.66
1594 1713 1.534959 TGAGGAGCTCAGGCACAGT 60.535 57.895 17.19 0.00 41.70 3.55
1595 1714 3.385469 TGAGGAGCTCAGGCACAG 58.615 61.111 17.19 0.00 41.70 3.66
1602 1721 2.866460 GCGTTGTTTACTGAGGAGCTCA 60.866 50.000 17.19 0.00 38.25 4.26
1603 1722 1.727335 GCGTTGTTTACTGAGGAGCTC 59.273 52.381 4.71 4.71 0.00 4.09
1604 1723 1.608283 GGCGTTGTTTACTGAGGAGCT 60.608 52.381 0.00 0.00 0.00 4.09
1605 1724 0.796927 GGCGTTGTTTACTGAGGAGC 59.203 55.000 0.00 0.00 0.00 4.70
1606 1725 1.270625 TGGGCGTTGTTTACTGAGGAG 60.271 52.381 0.00 0.00 0.00 3.69
1607 1726 0.759959 TGGGCGTTGTTTACTGAGGA 59.240 50.000 0.00 0.00 0.00 3.71
1608 1727 0.872388 GTGGGCGTTGTTTACTGAGG 59.128 55.000 0.00 0.00 0.00 3.86
1609 1728 1.878953 AGTGGGCGTTGTTTACTGAG 58.121 50.000 0.00 0.00 0.00 3.35
1610 1729 1.944024 CAAGTGGGCGTTGTTTACTGA 59.056 47.619 0.00 0.00 0.00 3.41
1611 1730 1.944024 TCAAGTGGGCGTTGTTTACTG 59.056 47.619 0.00 0.00 0.00 2.74
1612 1731 2.335316 TCAAGTGGGCGTTGTTTACT 57.665 45.000 0.00 0.00 0.00 2.24
1650 1769 2.293399 GCTGGTTTAACACAAGTGGAGG 59.707 50.000 5.08 0.00 34.19 4.30
1774 1893 1.859080 GCAAGTTATCTTAGGCGTCGG 59.141 52.381 0.00 0.00 32.07 4.79
1778 1898 8.276325 CACTAATTAAGCAAGTTATCTTAGGCG 58.724 37.037 0.00 0.00 30.93 5.52
1800 1920 3.118992 GGATAGATGGCATCGCATCACTA 60.119 47.826 29.67 15.95 31.37 2.74
1804 1924 2.168106 AGAGGATAGATGGCATCGCATC 59.832 50.000 24.98 24.98 0.00 3.91
1805 1925 2.186243 AGAGGATAGATGGCATCGCAT 58.814 47.619 21.01 17.62 0.00 4.73
1806 1926 1.637338 AGAGGATAGATGGCATCGCA 58.363 50.000 21.01 13.74 0.00 5.10
1807 1927 2.028658 TGAAGAGGATAGATGGCATCGC 60.029 50.000 21.01 14.22 0.00 4.58
1808 1928 3.257873 ACTGAAGAGGATAGATGGCATCG 59.742 47.826 21.01 5.56 0.00 3.84
1858 1978 2.153913 GCAGAGTGCACAACTACGG 58.846 57.895 21.04 7.44 44.26 4.02
1999 2119 2.376518 AGAGAAGAATTGGCCTGAACCA 59.623 45.455 3.32 0.00 38.16 3.67
2044 2164 2.230266 TGCATTAGCGACAGTGACAGTA 59.770 45.455 0.00 0.00 46.23 2.74
2113 2233 4.913924 GCTAATGACAGAACAAAAGTGCTG 59.086 41.667 2.11 2.11 34.65 4.41
2177 2297 6.617879 AGCAAAGTTGACGTTAGAAGTTTTT 58.382 32.000 0.00 0.00 0.00 1.94
2178 2298 6.128117 TGAGCAAAGTTGACGTTAGAAGTTTT 60.128 34.615 0.00 0.00 0.00 2.43
2179 2299 5.353123 TGAGCAAAGTTGACGTTAGAAGTTT 59.647 36.000 0.00 0.00 0.00 2.66
2180 2300 4.873827 TGAGCAAAGTTGACGTTAGAAGTT 59.126 37.500 0.00 0.00 0.00 2.66
2181 2301 4.270325 GTGAGCAAAGTTGACGTTAGAAGT 59.730 41.667 0.00 0.00 0.00 3.01
2182 2302 4.270084 TGTGAGCAAAGTTGACGTTAGAAG 59.730 41.667 0.00 0.00 0.00 2.85
2190 2310 2.227388 CCTCCATGTGAGCAAAGTTGAC 59.773 50.000 5.86 0.00 39.98 3.18
2192 2312 2.507484 TCCTCCATGTGAGCAAAGTTG 58.493 47.619 5.86 0.00 39.98 3.16
2223 2343 7.174253 TGTTTGGTTTATTTCTGAGCGTAGAAT 59.826 33.333 6.54 1.70 36.63 2.40
2228 2348 5.067283 AGTTGTTTGGTTTATTTCTGAGCGT 59.933 36.000 0.00 0.00 0.00 5.07
2305 2425 0.942962 CCTCCTTGATCTCAATGCGC 59.057 55.000 0.00 0.00 35.02 6.09
2306 2426 0.942962 GCCTCCTTGATCTCAATGCG 59.057 55.000 0.00 0.00 35.02 4.73
2311 2431 1.045350 CCGAGGCCTCCTTGATCTCA 61.045 60.000 27.20 0.00 37.20 3.27
2362 2482 3.695830 AAATTACCGTTGAGAGGCAGA 57.304 42.857 0.00 0.00 0.00 4.26
2368 2488 9.715121 AGAACAAGTTATAAATTACCGTTGAGA 57.285 29.630 0.00 0.00 0.00 3.27
2412 2534 6.100424 AGGAACAAAGGGAGTAGATCATAAGG 59.900 42.308 0.00 0.00 0.00 2.69
2428 2550 4.023193 ACCGTCTTGCATTTAGGAACAAAG 60.023 41.667 5.91 0.00 0.00 2.77
2429 2551 3.886505 ACCGTCTTGCATTTAGGAACAAA 59.113 39.130 5.91 0.00 0.00 2.83
2431 2553 3.134574 ACCGTCTTGCATTTAGGAACA 57.865 42.857 5.91 0.00 0.00 3.18
2432 2554 4.226761 CAAACCGTCTTGCATTTAGGAAC 58.773 43.478 5.91 0.00 0.00 3.62
2433 2555 3.254657 CCAAACCGTCTTGCATTTAGGAA 59.745 43.478 5.91 0.00 0.00 3.36
2434 2556 2.817258 CCAAACCGTCTTGCATTTAGGA 59.183 45.455 5.91 0.00 0.00 2.94
2435 2557 2.671070 GCCAAACCGTCTTGCATTTAGG 60.671 50.000 0.00 0.00 0.00 2.69
2436 2558 2.030363 TGCCAAACCGTCTTGCATTTAG 60.030 45.455 0.00 0.00 0.00 1.85
2437 2559 1.957177 TGCCAAACCGTCTTGCATTTA 59.043 42.857 0.00 0.00 0.00 1.40
2438 2560 0.749649 TGCCAAACCGTCTTGCATTT 59.250 45.000 0.00 0.00 0.00 2.32
2439 2561 0.314935 CTGCCAAACCGTCTTGCATT 59.685 50.000 0.00 0.00 0.00 3.56
2440 2562 0.823356 ACTGCCAAACCGTCTTGCAT 60.823 50.000 0.00 0.00 0.00 3.96
2441 2563 1.034838 AACTGCCAAACCGTCTTGCA 61.035 50.000 0.00 0.00 0.00 4.08
2442 2564 0.317854 GAACTGCCAAACCGTCTTGC 60.318 55.000 0.00 0.00 0.00 4.01
2443 2565 1.021202 TGAACTGCCAAACCGTCTTG 58.979 50.000 0.00 0.00 0.00 3.02
2444 2566 1.404035 GTTGAACTGCCAAACCGTCTT 59.596 47.619 0.00 0.00 0.00 3.01
2445 2567 1.021968 GTTGAACTGCCAAACCGTCT 58.978 50.000 0.00 0.00 0.00 4.18
2446 2568 0.736053 TGTTGAACTGCCAAACCGTC 59.264 50.000 0.00 0.00 0.00 4.79
2447 2569 1.398692 ATGTTGAACTGCCAAACCGT 58.601 45.000 0.00 0.00 0.00 4.83
2448 2570 2.507339 AATGTTGAACTGCCAAACCG 57.493 45.000 0.00 0.00 0.00 4.44
2449 2571 5.195001 TCTAAATGTTGAACTGCCAAACC 57.805 39.130 0.00 0.00 0.00 3.27
2450 2572 6.533367 TGTTTCTAAATGTTGAACTGCCAAAC 59.467 34.615 0.00 0.13 0.00 2.93
2451 2573 6.634805 TGTTTCTAAATGTTGAACTGCCAAA 58.365 32.000 0.00 0.00 0.00 3.28
2452 2574 6.096141 TCTGTTTCTAAATGTTGAACTGCCAA 59.904 34.615 0.00 0.00 0.00 4.52
2453 2575 5.592282 TCTGTTTCTAAATGTTGAACTGCCA 59.408 36.000 0.00 0.00 0.00 4.92
2454 2576 6.072112 TCTGTTTCTAAATGTTGAACTGCC 57.928 37.500 0.00 0.00 0.00 4.85
2455 2577 6.145535 CCTCTGTTTCTAAATGTTGAACTGC 58.854 40.000 0.00 0.00 0.00 4.40
2456 2578 7.264373 ACCTCTGTTTCTAAATGTTGAACTG 57.736 36.000 0.00 0.00 0.00 3.16
2457 2579 8.211629 ACTACCTCTGTTTCTAAATGTTGAACT 58.788 33.333 0.00 0.00 0.00 3.01
2458 2580 8.379457 ACTACCTCTGTTTCTAAATGTTGAAC 57.621 34.615 0.00 0.00 0.00 3.18
2468 2590 9.537852 TCCAGTAAAATACTACCTCTGTTTCTA 57.462 33.333 0.00 0.00 37.23 2.10
2469 2591 8.431910 TCCAGTAAAATACTACCTCTGTTTCT 57.568 34.615 0.00 0.00 37.23 2.52
2470 2592 8.933807 GTTCCAGTAAAATACTACCTCTGTTTC 58.066 37.037 0.00 0.00 37.23 2.78
2471 2593 7.601508 CGTTCCAGTAAAATACTACCTCTGTTT 59.398 37.037 0.00 0.00 37.23 2.83
2472 2594 7.039504 TCGTTCCAGTAAAATACTACCTCTGTT 60.040 37.037 0.00 0.00 37.23 3.16
2473 2595 6.435277 TCGTTCCAGTAAAATACTACCTCTGT 59.565 38.462 0.00 0.00 37.23 3.41
2474 2596 6.860080 TCGTTCCAGTAAAATACTACCTCTG 58.140 40.000 0.00 0.00 37.23 3.35
2475 2597 7.657023 ATCGTTCCAGTAAAATACTACCTCT 57.343 36.000 0.00 0.00 37.23 3.69
2476 2598 8.713737 AAATCGTTCCAGTAAAATACTACCTC 57.286 34.615 0.00 0.00 37.23 3.85
2477 2599 8.943002 CAAAATCGTTCCAGTAAAATACTACCT 58.057 33.333 0.00 0.00 37.23 3.08
2478 2600 8.938906 TCAAAATCGTTCCAGTAAAATACTACC 58.061 33.333 0.00 0.00 37.23 3.18
2481 2603 9.063615 ACTTCAAAATCGTTCCAGTAAAATACT 57.936 29.630 0.00 0.00 40.28 2.12
2482 2604 9.326339 GACTTCAAAATCGTTCCAGTAAAATAC 57.674 33.333 0.00 0.00 0.00 1.89
2483 2605 9.280174 AGACTTCAAAATCGTTCCAGTAAAATA 57.720 29.630 0.00 0.00 0.00 1.40
2484 2606 8.166422 AGACTTCAAAATCGTTCCAGTAAAAT 57.834 30.769 0.00 0.00 0.00 1.82
2496 2618 7.133891 AGTGGTCATTAAGACTTCAAAATCG 57.866 36.000 0.00 0.00 46.72 3.34
2510 2632 5.565509 TGCATTCCAGTAAAGTGGTCATTA 58.434 37.500 3.80 0.00 38.88 1.90
2517 2639 6.741992 TGTAAGATGCATTCCAGTAAAGTG 57.258 37.500 0.00 0.00 0.00 3.16
2623 2784 6.212888 AGATGGCACTGAATTAAAATGGTC 57.787 37.500 0.00 0.00 0.00 4.02
2627 2788 7.603784 GGTGAAAAGATGGCACTGAATTAAAAT 59.396 33.333 0.00 0.00 33.25 1.82
2645 2806 8.616076 CCTTCTGCATAATTAGTAGGTGAAAAG 58.384 37.037 0.00 0.00 29.74 2.27
2646 2807 7.556275 CCCTTCTGCATAATTAGTAGGTGAAAA 59.444 37.037 0.00 0.00 31.66 2.29
2653 2814 7.500992 TCTTGACCCTTCTGCATAATTAGTAG 58.499 38.462 0.00 0.00 0.00 2.57
2671 2832 3.309954 GCGTTTATGTGATCCTCTTGACC 59.690 47.826 0.00 0.00 0.00 4.02
2695 2856 2.438434 CCGGACCCATCCACTTGC 60.438 66.667 0.00 0.00 46.67 4.01
2726 2887 1.680249 GCTAACCTGAAGCTTGGGAGG 60.680 57.143 18.54 15.39 37.01 4.30
2752 2913 5.686753 TGCAGGTTCTCTAGTTTGGTTTAA 58.313 37.500 0.00 0.00 0.00 1.52
2753 2914 5.298989 TGCAGGTTCTCTAGTTTGGTTTA 57.701 39.130 0.00 0.00 0.00 2.01
2755 2916 3.857157 TGCAGGTTCTCTAGTTTGGTT 57.143 42.857 0.00 0.00 0.00 3.67
2756 2917 3.584848 AGATGCAGGTTCTCTAGTTTGGT 59.415 43.478 0.00 0.00 0.00 3.67
2758 2919 3.373439 GCAGATGCAGGTTCTCTAGTTTG 59.627 47.826 0.00 0.00 41.59 2.93
2759 2920 3.604582 GCAGATGCAGGTTCTCTAGTTT 58.395 45.455 0.00 0.00 41.59 2.66
2761 2922 2.977772 GCAGATGCAGGTTCTCTAGT 57.022 50.000 0.00 0.00 41.59 2.57
2772 2933 5.636624 CTTCTGGAGAAACATGCAGATGCA 61.637 45.833 10.37 10.37 45.55 3.96
2773 2934 2.362736 TCTGGAGAAACATGCAGATGC 58.637 47.619 0.00 0.00 42.01 3.91
2774 2935 4.259356 TCTTCTGGAGAAACATGCAGATG 58.741 43.478 0.00 2.39 45.55 2.90
2775 2936 4.564782 TCTTCTGGAGAAACATGCAGAT 57.435 40.909 0.00 0.00 45.55 2.90
2779 2940 4.034510 CGGTTATCTTCTGGAGAAACATGC 59.965 45.833 10.88 0.00 38.06 4.06
2780 2941 4.034510 GCGGTTATCTTCTGGAGAAACATG 59.965 45.833 10.88 0.00 38.06 3.21
2782 2943 3.260884 AGCGGTTATCTTCTGGAGAAACA 59.739 43.478 10.88 0.00 38.06 2.83
2783 2944 3.619038 CAGCGGTTATCTTCTGGAGAAAC 59.381 47.826 0.00 0.00 38.06 2.78
2784 2945 3.513912 TCAGCGGTTATCTTCTGGAGAAA 59.486 43.478 0.00 0.00 38.06 2.52
2785 2946 3.096852 TCAGCGGTTATCTTCTGGAGAA 58.903 45.455 0.00 0.00 38.06 2.87
2786 2947 2.735151 TCAGCGGTTATCTTCTGGAGA 58.265 47.619 0.00 0.00 39.13 3.71
2787 2948 3.118956 ACTTCAGCGGTTATCTTCTGGAG 60.119 47.826 0.00 0.00 37.99 3.86
2788 2949 2.832129 ACTTCAGCGGTTATCTTCTGGA 59.168 45.455 0.00 0.00 0.00 3.86
2789 2950 3.190874 GACTTCAGCGGTTATCTTCTGG 58.809 50.000 0.00 0.00 0.00 3.86
2790 2951 3.190874 GGACTTCAGCGGTTATCTTCTG 58.809 50.000 0.00 0.00 0.00 3.02
2791 2952 2.168728 GGGACTTCAGCGGTTATCTTCT 59.831 50.000 0.00 0.00 0.00 2.85
2792 2953 2.093658 TGGGACTTCAGCGGTTATCTTC 60.094 50.000 0.00 0.00 0.00 2.87
2793 2954 1.906574 TGGGACTTCAGCGGTTATCTT 59.093 47.619 0.00 0.00 0.00 2.40
2794 2955 1.568504 TGGGACTTCAGCGGTTATCT 58.431 50.000 0.00 0.00 0.00 1.98
2795 2956 2.007608 GTTGGGACTTCAGCGGTTATC 58.992 52.381 0.00 0.00 0.00 1.75
2796 2957 1.339727 GGTTGGGACTTCAGCGGTTAT 60.340 52.381 0.00 0.00 0.00 1.89
2797 2958 0.035739 GGTTGGGACTTCAGCGGTTA 59.964 55.000 0.00 0.00 0.00 2.85
2798 2959 1.228154 GGTTGGGACTTCAGCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
2799 2960 1.990160 TTGGTTGGGACTTCAGCGGT 61.990 55.000 0.00 0.00 0.00 5.68
2800 2961 0.609131 ATTGGTTGGGACTTCAGCGG 60.609 55.000 0.00 0.00 0.00 5.52
2801 2962 0.523072 CATTGGTTGGGACTTCAGCG 59.477 55.000 0.00 0.00 0.00 5.18
2802 2963 0.244721 GCATTGGTTGGGACTTCAGC 59.755 55.000 0.00 0.00 0.00 4.26
2803 2964 0.890683 GGCATTGGTTGGGACTTCAG 59.109 55.000 0.00 0.00 0.00 3.02
2804 2965 0.482446 AGGCATTGGTTGGGACTTCA 59.518 50.000 0.00 0.00 0.00 3.02
2805 2966 0.890683 CAGGCATTGGTTGGGACTTC 59.109 55.000 0.00 0.00 0.00 3.01
2806 2967 1.187567 GCAGGCATTGGTTGGGACTT 61.188 55.000 0.00 0.00 0.00 3.01
2807 2968 1.607467 GCAGGCATTGGTTGGGACT 60.607 57.895 0.00 0.00 0.00 3.85
2808 2969 1.907807 TGCAGGCATTGGTTGGGAC 60.908 57.895 0.00 0.00 0.00 4.46
2809 2970 1.907807 GTGCAGGCATTGGTTGGGA 60.908 57.895 0.00 0.00 0.00 4.37
2810 2971 1.756408 TTGTGCAGGCATTGGTTGGG 61.756 55.000 0.00 0.00 0.00 4.12
2811 2972 0.320073 CTTGTGCAGGCATTGGTTGG 60.320 55.000 0.00 0.00 0.00 3.77
2812 2973 0.320073 CCTTGTGCAGGCATTGGTTG 60.320 55.000 0.00 0.00 35.13 3.77
2813 2974 2.051941 CCTTGTGCAGGCATTGGTT 58.948 52.632 0.00 0.00 35.13 3.67
2814 2975 3.781760 CCTTGTGCAGGCATTGGT 58.218 55.556 0.00 0.00 35.13 3.67
2824 2985 0.961019 TTGAGAATGGTGCCTTGTGC 59.039 50.000 0.00 0.00 41.77 4.57
2825 2986 3.383761 GTTTTGAGAATGGTGCCTTGTG 58.616 45.455 0.00 0.00 0.00 3.33
2826 2987 2.365293 GGTTTTGAGAATGGTGCCTTGT 59.635 45.455 0.00 0.00 0.00 3.16
2827 2988 2.629617 AGGTTTTGAGAATGGTGCCTTG 59.370 45.455 0.00 0.00 0.00 3.61
2828 2989 2.629617 CAGGTTTTGAGAATGGTGCCTT 59.370 45.455 0.00 0.00 0.00 4.35
2829 2990 2.158475 TCAGGTTTTGAGAATGGTGCCT 60.158 45.455 0.00 0.00 0.00 4.75
2830 2991 2.238521 TCAGGTTTTGAGAATGGTGCC 58.761 47.619 0.00 0.00 0.00 5.01
2831 2992 3.319122 AGTTCAGGTTTTGAGAATGGTGC 59.681 43.478 0.00 0.00 37.07 5.01
2832 2993 4.580167 TCAGTTCAGGTTTTGAGAATGGTG 59.420 41.667 0.00 0.00 37.07 4.17
2833 2994 4.792068 TCAGTTCAGGTTTTGAGAATGGT 58.208 39.130 0.00 0.00 37.07 3.55
2834 2995 5.300286 AGTTCAGTTCAGGTTTTGAGAATGG 59.700 40.000 0.00 0.00 37.07 3.16
2835 2996 6.382869 AGTTCAGTTCAGGTTTTGAGAATG 57.617 37.500 0.00 0.00 37.07 2.67
2836 2997 6.378280 ACAAGTTCAGTTCAGGTTTTGAGAAT 59.622 34.615 0.00 0.00 37.07 2.40
2837 2998 5.710099 ACAAGTTCAGTTCAGGTTTTGAGAA 59.290 36.000 0.00 0.00 37.07 2.87
2838 2999 5.123820 CACAAGTTCAGTTCAGGTTTTGAGA 59.876 40.000 0.00 0.00 37.07 3.27
2839 3000 5.335127 CACAAGTTCAGTTCAGGTTTTGAG 58.665 41.667 0.00 0.00 37.07 3.02
2840 3001 4.380444 GCACAAGTTCAGTTCAGGTTTTGA 60.380 41.667 0.00 0.00 0.00 2.69
2868 3029 0.036732 TCTGTCTGGCCGCTGAAATT 59.963 50.000 0.00 0.00 0.00 1.82
2987 3148 4.764823 CCTGTGGTTAGAAAGGCACATAAA 59.235 41.667 0.00 0.00 0.00 1.40
2988 3149 4.202524 ACCTGTGGTTAGAAAGGCACATAA 60.203 41.667 0.00 0.00 32.73 1.90
2989 3150 3.329520 ACCTGTGGTTAGAAAGGCACATA 59.670 43.478 0.00 0.00 32.73 2.29
3009 3170 1.378531 TGCAAGAGAACACACACACC 58.621 50.000 0.00 0.00 0.00 4.16
3084 3279 0.036952 ATGCCGTCAGAACACTCCTG 60.037 55.000 0.00 0.00 0.00 3.86
3103 3298 1.375908 GATCCGGTGCTGCTGTTCA 60.376 57.895 0.00 0.00 0.00 3.18
3122 3317 0.739462 TTTGCGCGTCTGAATCCGAT 60.739 50.000 8.43 0.00 0.00 4.18
3123 3318 0.946700 TTTTGCGCGTCTGAATCCGA 60.947 50.000 8.43 0.00 0.00 4.55
3124 3319 0.110419 TTTTTGCGCGTCTGAATCCG 60.110 50.000 8.43 0.00 0.00 4.18
3125 3320 1.327507 GTTTTTGCGCGTCTGAATCC 58.672 50.000 8.43 0.00 0.00 3.01
3142 3337 1.986882 CAAGACCAGGAGGCTTTGTT 58.013 50.000 0.00 0.00 39.06 2.83
3143 3338 0.538287 GCAAGACCAGGAGGCTTTGT 60.538 55.000 0.00 0.00 39.06 2.83
3269 3467 2.092968 GGTGTGGCATGAGATTCAGGTA 60.093 50.000 0.00 0.00 29.72 3.08
3287 3487 2.154462 GGTGTCTTCTGAACCATGGTG 58.846 52.381 20.60 6.21 33.94 4.17
3307 3507 0.901124 AAGTCTACTGGCCAGAGCTG 59.099 55.000 39.19 22.79 39.73 4.24
3310 3510 0.539051 CCCAAGTCTACTGGCCAGAG 59.461 60.000 39.19 28.13 0.00 3.35
3315 3520 1.746991 GCTGCCCAAGTCTACTGGC 60.747 63.158 4.86 4.86 44.27 4.85
3332 3537 7.170320 ACAAATGAAAGAACAACAGATGAATGC 59.830 33.333 0.00 0.00 0.00 3.56
3380 3589 2.005451 CTTCACAGTATCCAGCTGCAC 58.995 52.381 8.66 5.70 37.47 4.57
3395 3604 0.886563 ATTCAGCAAGCAGGCTTCAC 59.113 50.000 3.02 0.00 42.71 3.18
3419 3628 8.766994 ATAAACCAATCTATGCCAAACTATGT 57.233 30.769 0.00 0.00 0.00 2.29
3501 3710 6.714810 TCTGCTAATTCGCCCATATTTTGTAT 59.285 34.615 0.00 0.00 0.00 2.29
3513 3722 7.043986 CGTGTATATCTTATCTGCTAATTCGCC 60.044 40.741 0.00 0.00 0.00 5.54
3527 3736 9.982291 GAACAATTGCTTTTCGTGTATATCTTA 57.018 29.630 5.05 0.00 0.00 2.10
3528 3737 7.968405 GGAACAATTGCTTTTCGTGTATATCTT 59.032 33.333 5.05 0.00 0.00 2.40
3548 3757 9.288576 CCATATGCTAATCTAATTCTGGAACAA 57.711 33.333 0.00 0.00 38.70 2.83
3608 3817 2.081462 GTTAGGATTGGACGTTGGGTG 58.919 52.381 0.00 0.00 0.00 4.61
3617 3826 7.015877 ACACTTACTGTAGTTGTTAGGATTGGA 59.984 37.037 0.00 0.00 0.00 3.53
3664 3873 0.466124 AAGCCGATTCAGGAGTAGCC 59.534 55.000 0.00 0.00 0.00 3.93
3684 3893 0.813184 AGCAGCAACGAAATGGGATG 59.187 50.000 0.00 0.00 0.00 3.51
3755 3980 3.818787 CTGCCTCACATTGCCGGC 61.819 66.667 22.73 22.73 42.78 6.13
3786 4011 4.475135 GCTGCCGGACCTTCCCTC 62.475 72.222 5.05 0.00 31.13 4.30
3788 4013 4.475135 GAGCTGCCGGACCTTCCC 62.475 72.222 5.05 0.00 31.13 3.97
3794 4019 2.202987 CTCATGGAGCTGCCGGAC 60.203 66.667 5.05 0.00 40.66 4.79
3830 4055 2.805546 GTCGACTGCCGCCTCATA 59.194 61.111 8.70 0.00 38.37 2.15
3838 4063 1.226717 GAGATGGACGTCGACTGCC 60.227 63.158 14.70 14.60 0.00 4.85
4100 4325 1.188219 ACGAGGATGACAGTGCCACT 61.188 55.000 0.00 0.00 0.00 4.00
4101 4326 0.320771 AACGAGGATGACAGTGCCAC 60.321 55.000 0.00 0.00 0.00 5.01
4102 4327 0.320683 CAACGAGGATGACAGTGCCA 60.321 55.000 0.00 0.00 0.00 4.92
4103 4328 1.639298 GCAACGAGGATGACAGTGCC 61.639 60.000 0.00 0.00 0.00 5.01
4104 4329 0.950555 TGCAACGAGGATGACAGTGC 60.951 55.000 0.00 0.00 0.00 4.40
4105 4330 0.792640 GTGCAACGAGGATGACAGTG 59.207 55.000 0.00 0.00 0.00 3.66
4106 4331 0.392706 TGTGCAACGAGGATGACAGT 59.607 50.000 0.00 0.00 42.39 3.55
4257 4482 2.046314 GAAGCAGCTACCCCGCAA 60.046 61.111 0.00 0.00 0.00 4.85
4258 4483 3.003173 AGAAGCAGCTACCCCGCA 61.003 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.