Multiple sequence alignment - TraesCS1A01G168900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G168900 chr1A 100.000 5131 0 0 1 5131 301780673 301775543 0.000000e+00 9476.0
1 TraesCS1A01G168900 chr1D 92.517 2539 94 27 227 2715 238073184 238070692 0.000000e+00 3548.0
2 TraesCS1A01G168900 chr1D 96.528 1872 39 7 2832 4701 238070659 238068812 0.000000e+00 3073.0
3 TraesCS1A01G168900 chr1D 87.185 437 25 18 4702 5131 238068745 238068333 7.780000e-128 468.0
4 TraesCS1A01G168900 chr1D 94.400 125 4 2 2716 2837 116548338 116548462 6.780000e-44 189.0
5 TraesCS1A01G168900 chr1B 91.882 1897 103 19 2834 4704 336208946 336210817 0.000000e+00 2603.0
6 TraesCS1A01G168900 chr1B 91.678 1466 70 22 207 1639 336206308 336207754 0.000000e+00 1984.0
7 TraesCS1A01G168900 chr1B 81.733 427 44 13 1978 2378 336207924 336208342 4.950000e-85 326.0
8 TraesCS1A01G168900 chr1B 94.413 179 10 0 4953 5131 336273464 336273642 5.060000e-70 276.0
9 TraesCS1A01G168900 chr1B 87.019 208 16 7 2455 2653 336208489 336208694 1.860000e-54 224.0
10 TraesCS1A01G168900 chr6A 95.868 121 3 1 2717 2835 147303659 147303779 1.460000e-45 195.0
11 TraesCS1A01G168900 chr3B 95.868 121 3 1 2718 2836 308386946 308386826 1.460000e-45 195.0
12 TraesCS1A01G168900 chr3A 93.284 134 6 3 2718 2849 607108182 607108050 1.460000e-45 195.0
13 TraesCS1A01G168900 chr2A 95.868 121 3 1 2718 2836 78845689 78845569 1.460000e-45 195.0
14 TraesCS1A01G168900 chr5D 94.488 127 4 2 2717 2840 492723289 492723163 5.240000e-45 193.0
15 TraesCS1A01G168900 chr7B 93.182 132 5 3 2705 2833 589467172 589467042 1.890000e-44 191.0
16 TraesCS1A01G168900 chr7A 93.701 127 6 1 2716 2840 595072534 595072408 6.780000e-44 189.0
17 TraesCS1A01G168900 chr7A 93.600 125 6 1 2718 2840 105313851 105313727 8.770000e-43 185.0
18 TraesCS1A01G168900 chr2B 81.746 126 13 9 4800 4923 680506068 680506185 4.230000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G168900 chr1A 301775543 301780673 5130 True 9476.00 9476 100.000000 1 5131 1 chr1A.!!$R1 5130
1 TraesCS1A01G168900 chr1D 238068333 238073184 4851 True 2363.00 3548 92.076667 227 5131 3 chr1D.!!$R1 4904
2 TraesCS1A01G168900 chr1B 336206308 336210817 4509 False 1284.25 2603 88.078000 207 4704 4 chr1B.!!$F2 4497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 926 0.026544 GTCATCGTCCGTCGTCTCTC 59.973 60.0 0.0 0.0 40.80 3.20 F
2170 2225 0.042131 AATCCTGGTAGGGTCACGGA 59.958 55.0 0.0 0.0 35.59 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2807 3126 0.038159 CTCCGTCCGAGAAAGCTTGT 60.038 55.0 0.00 0.0 41.63 3.16 R
4139 4458 1.053048 CGACGACAATATAGCGCCAG 58.947 55.0 2.29 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.744570 GGCAAATTTAGTTGGTAAGAGGC 58.255 43.478 0.00 0.00 0.00 4.70
23 24 4.412207 GCAAATTTAGTTGGTAAGAGGCG 58.588 43.478 0.00 0.00 0.00 5.52
24 25 4.674362 GCAAATTTAGTTGGTAAGAGGCGG 60.674 45.833 0.00 0.00 0.00 6.13
25 26 2.103537 TTTAGTTGGTAAGAGGCGGC 57.896 50.000 0.00 0.00 0.00 6.53
26 27 0.978151 TTAGTTGGTAAGAGGCGGCA 59.022 50.000 13.08 0.00 0.00 5.69
27 28 0.978151 TAGTTGGTAAGAGGCGGCAA 59.022 50.000 13.08 0.00 0.00 4.52
28 29 0.109723 AGTTGGTAAGAGGCGGCAAA 59.890 50.000 13.08 0.00 0.00 3.68
29 30 0.955905 GTTGGTAAGAGGCGGCAAAA 59.044 50.000 13.08 0.00 0.00 2.44
30 31 1.544246 GTTGGTAAGAGGCGGCAAAAT 59.456 47.619 13.08 0.00 0.00 1.82
31 32 1.459450 TGGTAAGAGGCGGCAAAATC 58.541 50.000 13.08 0.00 0.00 2.17
32 33 0.738975 GGTAAGAGGCGGCAAAATCC 59.261 55.000 13.08 4.19 0.00 3.01
33 34 1.682087 GGTAAGAGGCGGCAAAATCCT 60.682 52.381 13.08 0.00 0.00 3.24
34 35 1.401905 GTAAGAGGCGGCAAAATCCTG 59.598 52.381 13.08 0.00 0.00 3.86
35 36 1.598701 AAGAGGCGGCAAAATCCTGC 61.599 55.000 13.08 0.00 41.85 4.85
36 37 2.036256 AGGCGGCAAAATCCTGCT 59.964 55.556 13.08 0.00 42.25 4.24
37 38 1.997928 GAGGCGGCAAAATCCTGCTC 61.998 60.000 13.08 0.00 42.25 4.26
38 39 2.048603 GGCGGCAAAATCCTGCTCT 61.049 57.895 3.07 0.00 42.25 4.09
39 40 1.598701 GGCGGCAAAATCCTGCTCTT 61.599 55.000 3.07 0.00 42.25 2.85
40 41 0.244721 GCGGCAAAATCCTGCTCTTT 59.755 50.000 0.00 0.00 42.25 2.52
41 42 1.337167 GCGGCAAAATCCTGCTCTTTT 60.337 47.619 0.00 0.00 42.25 2.27
42 43 2.867647 GCGGCAAAATCCTGCTCTTTTT 60.868 45.455 0.00 0.00 42.25 1.94
59 60 2.307934 TTTTGCCGCAAAAGCTTTCT 57.692 40.000 24.13 0.00 38.24 2.52
60 61 3.444703 TTTTGCCGCAAAAGCTTTCTA 57.555 38.095 24.13 3.10 38.24 2.10
61 62 3.444703 TTTGCCGCAAAAGCTTTCTAA 57.555 38.095 16.17 0.00 29.89 2.10
62 63 2.415697 TGCCGCAAAAGCTTTCTAAC 57.584 45.000 13.10 2.40 0.00 2.34
63 64 1.953686 TGCCGCAAAAGCTTTCTAACT 59.046 42.857 13.10 0.00 0.00 2.24
64 65 3.142951 TGCCGCAAAAGCTTTCTAACTA 58.857 40.909 13.10 0.00 0.00 2.24
65 66 3.188460 TGCCGCAAAAGCTTTCTAACTAG 59.812 43.478 13.10 0.00 0.00 2.57
66 67 3.435671 GCCGCAAAAGCTTTCTAACTAGA 59.564 43.478 13.10 0.00 0.00 2.43
67 68 4.083484 GCCGCAAAAGCTTTCTAACTAGAA 60.083 41.667 13.10 0.00 40.33 2.10
68 69 5.562113 GCCGCAAAAGCTTTCTAACTAGAAA 60.562 40.000 13.10 10.67 46.70 2.52
111 112 8.502105 AAATACATACAACTAAACTAGCCACC 57.498 34.615 0.00 0.00 0.00 4.61
112 113 5.757099 ACATACAACTAAACTAGCCACCT 57.243 39.130 0.00 0.00 0.00 4.00
113 114 6.862469 ACATACAACTAAACTAGCCACCTA 57.138 37.500 0.00 0.00 0.00 3.08
114 115 7.248743 ACATACAACTAAACTAGCCACCTAA 57.751 36.000 0.00 0.00 0.00 2.69
115 116 7.682628 ACATACAACTAAACTAGCCACCTAAA 58.317 34.615 0.00 0.00 0.00 1.85
116 117 8.158789 ACATACAACTAAACTAGCCACCTAAAA 58.841 33.333 0.00 0.00 0.00 1.52
117 118 9.174166 CATACAACTAAACTAGCCACCTAAAAT 57.826 33.333 0.00 0.00 0.00 1.82
118 119 9.749340 ATACAACTAAACTAGCCACCTAAAATT 57.251 29.630 0.00 0.00 0.00 1.82
120 121 9.749340 ACAACTAAACTAGCCACCTAAAATTAT 57.251 29.630 0.00 0.00 0.00 1.28
123 124 8.683615 ACTAAACTAGCCACCTAAAATTATTGC 58.316 33.333 0.00 0.00 0.00 3.56
124 125 5.751243 ACTAGCCACCTAAAATTATTGCG 57.249 39.130 0.00 0.00 0.00 4.85
125 126 4.578928 ACTAGCCACCTAAAATTATTGCGG 59.421 41.667 0.00 0.00 0.00 5.69
126 127 3.361786 AGCCACCTAAAATTATTGCGGT 58.638 40.909 0.00 0.00 0.00 5.68
127 128 3.380320 AGCCACCTAAAATTATTGCGGTC 59.620 43.478 0.00 0.00 0.00 4.79
128 129 3.490249 GCCACCTAAAATTATTGCGGTCC 60.490 47.826 0.00 0.00 0.00 4.46
129 130 3.951680 CCACCTAAAATTATTGCGGTCCT 59.048 43.478 0.00 0.00 0.00 3.85
130 131 4.401202 CCACCTAAAATTATTGCGGTCCTT 59.599 41.667 0.00 0.00 0.00 3.36
131 132 5.105513 CCACCTAAAATTATTGCGGTCCTTT 60.106 40.000 0.00 0.00 0.00 3.11
132 133 6.394809 CACCTAAAATTATTGCGGTCCTTTT 58.605 36.000 0.00 0.00 0.00 2.27
133 134 6.871492 CACCTAAAATTATTGCGGTCCTTTTT 59.129 34.615 0.00 0.00 0.00 1.94
134 135 7.062956 CACCTAAAATTATTGCGGTCCTTTTTC 59.937 37.037 0.00 0.00 0.00 2.29
135 136 7.039293 ACCTAAAATTATTGCGGTCCTTTTTCT 60.039 33.333 0.00 0.00 0.00 2.52
136 137 7.488150 CCTAAAATTATTGCGGTCCTTTTTCTC 59.512 37.037 0.00 0.00 0.00 2.87
137 138 5.975693 AATTATTGCGGTCCTTTTTCTCA 57.024 34.783 0.00 0.00 0.00 3.27
138 139 5.567138 ATTATTGCGGTCCTTTTTCTCAG 57.433 39.130 0.00 0.00 0.00 3.35
139 140 0.951558 TTGCGGTCCTTTTTCTCAGC 59.048 50.000 0.00 0.00 0.00 4.26
140 141 0.108585 TGCGGTCCTTTTTCTCAGCT 59.891 50.000 0.00 0.00 0.00 4.24
141 142 1.239347 GCGGTCCTTTTTCTCAGCTT 58.761 50.000 0.00 0.00 0.00 3.74
142 143 1.609072 GCGGTCCTTTTTCTCAGCTTT 59.391 47.619 0.00 0.00 0.00 3.51
143 144 2.034685 GCGGTCCTTTTTCTCAGCTTTT 59.965 45.455 0.00 0.00 0.00 2.27
144 145 3.853676 GCGGTCCTTTTTCTCAGCTTTTC 60.854 47.826 0.00 0.00 0.00 2.29
145 146 3.565902 CGGTCCTTTTTCTCAGCTTTTCT 59.434 43.478 0.00 0.00 0.00 2.52
146 147 4.755123 CGGTCCTTTTTCTCAGCTTTTCTA 59.245 41.667 0.00 0.00 0.00 2.10
147 148 5.412904 CGGTCCTTTTTCTCAGCTTTTCTAT 59.587 40.000 0.00 0.00 0.00 1.98
148 149 6.616017 GGTCCTTTTTCTCAGCTTTTCTATG 58.384 40.000 0.00 0.00 0.00 2.23
149 150 6.089476 GTCCTTTTTCTCAGCTTTTCTATGC 58.911 40.000 0.00 0.00 0.00 3.14
150 151 5.769662 TCCTTTTTCTCAGCTTTTCTATGCA 59.230 36.000 0.00 0.00 0.00 3.96
151 152 6.265196 TCCTTTTTCTCAGCTTTTCTATGCAA 59.735 34.615 0.00 0.00 0.00 4.08
152 153 7.039504 TCCTTTTTCTCAGCTTTTCTATGCAAT 60.040 33.333 0.00 0.00 0.00 3.56
153 154 7.601508 CCTTTTTCTCAGCTTTTCTATGCAATT 59.398 33.333 0.00 0.00 0.00 2.32
154 155 8.891671 TTTTTCTCAGCTTTTCTATGCAATTT 57.108 26.923 0.00 0.00 0.00 1.82
155 156 8.891671 TTTTCTCAGCTTTTCTATGCAATTTT 57.108 26.923 0.00 0.00 0.00 1.82
156 157 8.891671 TTTCTCAGCTTTTCTATGCAATTTTT 57.108 26.923 0.00 0.00 0.00 1.94
157 158 8.524870 TTCTCAGCTTTTCTATGCAATTTTTC 57.475 30.769 0.00 0.00 0.00 2.29
158 159 7.660112 TCTCAGCTTTTCTATGCAATTTTTCA 58.340 30.769 0.00 0.00 0.00 2.69
159 160 8.143193 TCTCAGCTTTTCTATGCAATTTTTCAA 58.857 29.630 0.00 0.00 0.00 2.69
160 161 8.659925 TCAGCTTTTCTATGCAATTTTTCAAA 57.340 26.923 0.00 0.00 0.00 2.69
161 162 8.767085 TCAGCTTTTCTATGCAATTTTTCAAAG 58.233 29.630 0.00 0.00 0.00 2.77
162 163 8.767085 CAGCTTTTCTATGCAATTTTTCAAAGA 58.233 29.630 0.00 0.00 0.00 2.52
163 164 8.985805 AGCTTTTCTATGCAATTTTTCAAAGAG 58.014 29.630 0.00 0.00 0.00 2.85
164 165 8.768019 GCTTTTCTATGCAATTTTTCAAAGAGT 58.232 29.630 0.00 0.00 0.00 3.24
166 167 7.642071 TTCTATGCAATTTTTCAAAGAGTGC 57.358 32.000 6.17 6.17 0.00 4.40
167 168 6.985117 TCTATGCAATTTTTCAAAGAGTGCT 58.015 32.000 13.48 3.30 0.00 4.40
168 169 8.109705 TCTATGCAATTTTTCAAAGAGTGCTA 57.890 30.769 13.48 2.10 0.00 3.49
169 170 8.239314 TCTATGCAATTTTTCAAAGAGTGCTAG 58.761 33.333 13.48 11.76 0.00 3.42
170 171 4.984161 TGCAATTTTTCAAAGAGTGCTAGC 59.016 37.500 13.48 8.10 0.00 3.42
171 172 4.089065 GCAATTTTTCAAAGAGTGCTAGCG 59.911 41.667 10.77 0.00 0.00 4.26
172 173 5.451908 CAATTTTTCAAAGAGTGCTAGCGA 58.548 37.500 10.77 0.00 0.00 4.93
173 174 4.732285 TTTTTCAAAGAGTGCTAGCGAG 57.268 40.909 10.77 0.00 0.00 5.03
174 175 3.660501 TTTCAAAGAGTGCTAGCGAGA 57.339 42.857 10.77 0.00 0.00 4.04
175 176 2.929531 TCAAAGAGTGCTAGCGAGAG 57.070 50.000 10.77 0.00 0.00 3.20
176 177 2.437413 TCAAAGAGTGCTAGCGAGAGA 58.563 47.619 10.77 0.00 0.00 3.10
177 178 2.421775 TCAAAGAGTGCTAGCGAGAGAG 59.578 50.000 10.77 0.00 0.00 3.20
178 179 1.388547 AAGAGTGCTAGCGAGAGAGG 58.611 55.000 10.77 0.00 0.00 3.69
179 180 0.254747 AGAGTGCTAGCGAGAGAGGT 59.745 55.000 10.77 0.00 0.00 3.85
180 181 1.099689 GAGTGCTAGCGAGAGAGGTT 58.900 55.000 10.77 0.00 0.00 3.50
181 182 0.814457 AGTGCTAGCGAGAGAGGTTG 59.186 55.000 10.77 0.00 0.00 3.77
182 183 0.811915 GTGCTAGCGAGAGAGGTTGA 59.188 55.000 10.77 0.00 0.00 3.18
183 184 1.098869 TGCTAGCGAGAGAGGTTGAG 58.901 55.000 10.77 0.00 0.00 3.02
184 185 1.340114 TGCTAGCGAGAGAGGTTGAGA 60.340 52.381 10.77 0.00 0.00 3.27
185 186 1.333619 GCTAGCGAGAGAGGTTGAGAG 59.666 57.143 0.00 0.00 0.00 3.20
186 187 2.912771 CTAGCGAGAGAGGTTGAGAGA 58.087 52.381 0.00 0.00 0.00 3.10
187 188 2.435372 AGCGAGAGAGGTTGAGAGAT 57.565 50.000 0.00 0.00 0.00 2.75
188 189 3.569194 AGCGAGAGAGGTTGAGAGATA 57.431 47.619 0.00 0.00 0.00 1.98
189 190 3.476552 AGCGAGAGAGGTTGAGAGATAG 58.523 50.000 0.00 0.00 0.00 2.08
190 191 3.135712 AGCGAGAGAGGTTGAGAGATAGA 59.864 47.826 0.00 0.00 0.00 1.98
191 192 3.880490 GCGAGAGAGGTTGAGAGATAGAA 59.120 47.826 0.00 0.00 0.00 2.10
192 193 4.261031 GCGAGAGAGGTTGAGAGATAGAAC 60.261 50.000 0.00 0.00 0.00 3.01
193 194 5.123227 CGAGAGAGGTTGAGAGATAGAACT 58.877 45.833 0.00 0.00 0.00 3.01
194 195 5.588648 CGAGAGAGGTTGAGAGATAGAACTT 59.411 44.000 0.00 0.00 0.00 2.66
195 196 6.238374 CGAGAGAGGTTGAGAGATAGAACTTC 60.238 46.154 0.00 0.00 0.00 3.01
196 197 6.489603 AGAGAGGTTGAGAGATAGAACTTCA 58.510 40.000 0.00 0.00 30.31 3.02
197 198 7.125391 AGAGAGGTTGAGAGATAGAACTTCAT 58.875 38.462 0.00 0.00 30.31 2.57
198 199 8.278639 AGAGAGGTTGAGAGATAGAACTTCATA 58.721 37.037 0.00 0.00 30.31 2.15
199 200 8.830915 AGAGGTTGAGAGATAGAACTTCATAA 57.169 34.615 0.00 0.00 30.31 1.90
200 201 8.691797 AGAGGTTGAGAGATAGAACTTCATAAC 58.308 37.037 0.00 0.00 30.31 1.89
201 202 8.367660 AGGTTGAGAGATAGAACTTCATAACA 57.632 34.615 0.00 0.00 0.00 2.41
202 203 8.254508 AGGTTGAGAGATAGAACTTCATAACAC 58.745 37.037 0.00 0.00 0.00 3.32
203 204 8.254508 GGTTGAGAGATAGAACTTCATAACACT 58.745 37.037 0.00 0.00 0.00 3.55
204 205 9.081997 GTTGAGAGATAGAACTTCATAACACTG 57.918 37.037 0.00 0.00 0.00 3.66
205 206 8.581253 TGAGAGATAGAACTTCATAACACTGA 57.419 34.615 0.00 0.00 0.00 3.41
206 207 9.194972 TGAGAGATAGAACTTCATAACACTGAT 57.805 33.333 0.00 0.00 0.00 2.90
207 208 9.677567 GAGAGATAGAACTTCATAACACTGATC 57.322 37.037 0.00 0.00 0.00 2.92
208 209 9.420118 AGAGATAGAACTTCATAACACTGATCT 57.580 33.333 0.00 0.00 0.00 2.75
209 210 9.677567 GAGATAGAACTTCATAACACTGATCTC 57.322 37.037 0.00 0.00 0.00 2.75
210 211 8.637986 AGATAGAACTTCATAACACTGATCTCC 58.362 37.037 0.00 0.00 0.00 3.71
215 216 5.723887 ACTTCATAACACTGATCTCCCTTCT 59.276 40.000 0.00 0.00 0.00 2.85
250 251 1.272147 ACATCCAGAGGAAAACAGGCC 60.272 52.381 0.00 0.00 34.34 5.19
260 261 2.693074 GGAAAACAGGCCAAAGAGACAA 59.307 45.455 5.01 0.00 0.00 3.18
283 284 6.832520 AAGGAAAACAAAAACAAAAGGCAT 57.167 29.167 0.00 0.00 0.00 4.40
297 298 4.487412 GCATGCGAGGTTGCCTGC 62.487 66.667 0.00 4.01 46.40 4.85
298 299 4.170062 CATGCGAGGTTGCCTGCG 62.170 66.667 0.00 0.00 31.76 5.18
402 403 5.276584 CGCAGTATTTCTACAAGAGCATCAC 60.277 44.000 0.00 0.00 37.82 3.06
417 418 1.599071 CATCACCGATCCAAACCATCG 59.401 52.381 0.00 0.00 42.36 3.84
432 433 1.872952 CCATCGAGCAAACTCACACAA 59.127 47.619 0.00 0.00 43.66 3.33
435 436 1.668751 TCGAGCAAACTCACACAAACC 59.331 47.619 0.00 0.00 43.66 3.27
436 437 1.670811 CGAGCAAACTCACACAAACCT 59.329 47.619 0.00 0.00 43.66 3.50
438 439 2.682856 GAGCAAACTCACACAAACCTCA 59.317 45.455 0.00 0.00 42.93 3.86
439 440 3.088532 AGCAAACTCACACAAACCTCAA 58.911 40.909 0.00 0.00 0.00 3.02
440 441 3.129287 AGCAAACTCACACAAACCTCAAG 59.871 43.478 0.00 0.00 0.00 3.02
451 459 5.888161 ACACAAACCTCAAGAGAATCAAACT 59.112 36.000 0.00 0.00 37.82 2.66
457 465 7.269477 ACCTCAAGAGAATCAAACTGAAAAG 57.731 36.000 0.00 0.00 37.82 2.27
459 467 7.228308 ACCTCAAGAGAATCAAACTGAAAAGAG 59.772 37.037 0.00 0.00 37.82 2.85
568 581 5.698089 GCAACTACTACTAGGGTTTCGTTTT 59.302 40.000 0.00 0.00 0.00 2.43
790 812 0.320374 CAAACAGCCTAGGTCGGTCA 59.680 55.000 11.31 0.00 0.00 4.02
904 926 0.026544 GTCATCGTCCGTCGTCTCTC 59.973 60.000 0.00 0.00 40.80 3.20
908 930 2.462782 CGTCCGTCGTCTCTCTCCC 61.463 68.421 0.00 0.00 34.52 4.30
910 932 3.203412 CCGTCGTCTCTCTCCCCG 61.203 72.222 0.00 0.00 0.00 5.73
911 933 3.203412 CGTCGTCTCTCTCCCCGG 61.203 72.222 0.00 0.00 0.00 5.73
944 966 1.492720 GTAGCTACCATCTCAAGCGC 58.507 55.000 13.20 0.00 41.19 5.92
960 982 3.621394 GCTCTCGCCGTCGATTGC 61.621 66.667 0.00 0.00 44.56 3.56
966 988 1.206578 CGCCGTCGATTGCTGTTTT 59.793 52.632 7.42 0.00 38.10 2.43
1505 1541 3.045142 CCCCACTTGTGCTTGCAG 58.955 61.111 0.00 0.00 0.00 4.41
1635 1687 5.939764 ATAAGAGTGTGGAATGACAGCTA 57.060 39.130 0.00 0.00 0.00 3.32
1660 1712 3.501062 GGTAACCAAGACCACTAACTTGC 59.499 47.826 0.00 0.00 41.15 4.01
1802 1854 2.173669 CGTGTGATGCCATCGGACC 61.174 63.158 0.00 0.00 0.00 4.46
1804 1856 2.355193 TGTGATGCCATCGGACCGA 61.355 57.895 20.85 20.85 41.13 4.69
1805 1857 1.592669 GTGATGCCATCGGACCGAG 60.593 63.158 22.99 10.76 39.91 4.63
1812 1864 1.068194 GCCATCGGACCGAGATTCTAG 60.068 57.143 22.99 6.47 39.91 2.43
1863 1916 7.816640 TCAACTTTGTGACTATTATCCTTTGC 58.183 34.615 0.00 0.00 0.00 3.68
1918 1971 5.282055 TGATCCATTCTTTATCGTCTGCT 57.718 39.130 0.00 0.00 0.00 4.24
2064 2117 4.582656 ACAGCAGTGCCATACTTTGTTTTA 59.417 37.500 12.58 0.00 37.60 1.52
2169 2224 0.909623 AAATCCTGGTAGGGTCACGG 59.090 55.000 0.00 0.00 35.59 4.94
2170 2225 0.042131 AATCCTGGTAGGGTCACGGA 59.958 55.000 0.00 0.00 35.59 4.69
2171 2226 0.686769 ATCCTGGTAGGGTCACGGAC 60.687 60.000 0.00 0.00 35.59 4.79
2172 2227 1.305046 CCTGGTAGGGTCACGGACT 60.305 63.158 4.41 0.00 32.47 3.85
2173 2228 1.321074 CCTGGTAGGGTCACGGACTC 61.321 65.000 4.41 0.58 32.35 3.36
2174 2229 0.611062 CTGGTAGGGTCACGGACTCA 60.611 60.000 6.67 0.00 35.11 3.41
2175 2230 0.896940 TGGTAGGGTCACGGACTCAC 60.897 60.000 6.67 3.46 35.11 3.51
2176 2231 1.505353 GTAGGGTCACGGACTCACG 59.495 63.158 6.67 0.00 35.11 4.35
2321 2400 3.745332 TGTATTCTGCAAGCAATGACG 57.255 42.857 0.00 0.00 0.00 4.35
2325 2404 3.536158 TTCTGCAAGCAATGACGTAAC 57.464 42.857 0.00 0.00 0.00 2.50
2550 2699 1.300465 CCTCATGAGGTCGGCGATG 60.300 63.158 30.55 7.03 43.61 3.84
2633 2788 5.913137 TTCCTTTGTAATGCCAACCTATG 57.087 39.130 0.00 0.00 0.00 2.23
2715 3034 7.176515 TGAAAAAGGTGATATTTGCTTAGCTCA 59.823 33.333 5.60 0.00 0.00 4.26
2716 3035 6.442513 AAAGGTGATATTTGCTTAGCTCAC 57.557 37.500 13.03 13.03 31.13 3.51
2717 3036 5.365021 AGGTGATATTTGCTTAGCTCACT 57.635 39.130 18.40 6.60 32.10 3.41
2719 3038 6.284459 AGGTGATATTTGCTTAGCTCACTAC 58.716 40.000 18.40 7.31 32.10 2.73
2721 3040 6.422400 GGTGATATTTGCTTAGCTCACTACTC 59.578 42.308 18.40 3.71 32.10 2.59
2722 3041 6.422400 GTGATATTTGCTTAGCTCACTACTCC 59.578 42.308 13.83 0.00 29.93 3.85
2725 3044 2.379972 TGCTTAGCTCACTACTCCCTC 58.620 52.381 5.60 0.00 0.00 4.30
2727 3046 1.950909 CTTAGCTCACTACTCCCTCCG 59.049 57.143 0.00 0.00 0.00 4.63
2729 3048 0.394625 AGCTCACTACTCCCTCCGTC 60.395 60.000 0.00 0.00 0.00 4.79
2730 3049 0.394625 GCTCACTACTCCCTCCGTCT 60.395 60.000 0.00 0.00 0.00 4.18
2731 3050 1.384525 CTCACTACTCCCTCCGTCTG 58.615 60.000 0.00 0.00 0.00 3.51
2732 3051 0.989602 TCACTACTCCCTCCGTCTGA 59.010 55.000 0.00 0.00 0.00 3.27
2733 3052 1.353358 TCACTACTCCCTCCGTCTGAA 59.647 52.381 0.00 0.00 0.00 3.02
2734 3053 2.168496 CACTACTCCCTCCGTCTGAAA 58.832 52.381 0.00 0.00 0.00 2.69
2735 3054 2.561419 CACTACTCCCTCCGTCTGAAAA 59.439 50.000 0.00 0.00 0.00 2.29
2736 3055 3.006537 CACTACTCCCTCCGTCTGAAAAA 59.993 47.826 0.00 0.00 0.00 1.94
2754 3073 3.801114 AAAACTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
2755 3074 2.736670 AACTTGTCCCAAGCTTGTCT 57.263 45.000 24.35 0.00 0.00 3.41
2756 3075 2.262423 ACTTGTCCCAAGCTTGTCTC 57.738 50.000 24.35 13.85 0.00 3.36
2757 3076 1.490490 ACTTGTCCCAAGCTTGTCTCA 59.510 47.619 24.35 16.04 0.00 3.27
2758 3077 2.092429 ACTTGTCCCAAGCTTGTCTCAA 60.092 45.455 24.35 21.06 0.00 3.02
2759 3078 2.727123 TGTCCCAAGCTTGTCTCAAA 57.273 45.000 24.35 2.97 0.00 2.69
2760 3079 3.228188 TGTCCCAAGCTTGTCTCAAAT 57.772 42.857 24.35 0.00 0.00 2.32
2761 3080 2.886523 TGTCCCAAGCTTGTCTCAAATG 59.113 45.455 24.35 6.88 0.00 2.32
2762 3081 2.229784 GTCCCAAGCTTGTCTCAAATGG 59.770 50.000 24.35 15.36 0.00 3.16
2763 3082 2.108075 TCCCAAGCTTGTCTCAAATGGA 59.892 45.455 24.35 17.30 0.00 3.41
2764 3083 3.094572 CCCAAGCTTGTCTCAAATGGAT 58.905 45.455 24.35 0.00 0.00 3.41
2765 3084 3.119245 CCCAAGCTTGTCTCAAATGGATG 60.119 47.826 24.35 4.77 0.00 3.51
2766 3085 3.508793 CCAAGCTTGTCTCAAATGGATGT 59.491 43.478 24.35 0.00 0.00 3.06
2767 3086 4.701651 CCAAGCTTGTCTCAAATGGATGTA 59.298 41.667 24.35 0.00 0.00 2.29
2768 3087 5.359009 CCAAGCTTGTCTCAAATGGATGTAT 59.641 40.000 24.35 0.00 0.00 2.29
2769 3088 6.459298 CCAAGCTTGTCTCAAATGGATGTATC 60.459 42.308 24.35 0.00 0.00 2.24
2770 3089 5.999044 AGCTTGTCTCAAATGGATGTATCT 58.001 37.500 0.00 0.00 0.00 1.98
2771 3090 7.129457 AGCTTGTCTCAAATGGATGTATCTA 57.871 36.000 0.00 0.00 0.00 1.98
2772 3091 7.215789 AGCTTGTCTCAAATGGATGTATCTAG 58.784 38.462 0.00 0.00 0.00 2.43
2773 3092 6.073331 GCTTGTCTCAAATGGATGTATCTAGC 60.073 42.308 0.00 0.00 0.00 3.42
2774 3093 6.484364 TGTCTCAAATGGATGTATCTAGCA 57.516 37.500 0.00 0.00 0.00 3.49
2775 3094 6.283694 TGTCTCAAATGGATGTATCTAGCAC 58.716 40.000 0.00 0.00 0.00 4.40
2776 3095 6.098838 TGTCTCAAATGGATGTATCTAGCACT 59.901 38.462 0.00 0.00 0.00 4.40
2777 3096 7.287696 TGTCTCAAATGGATGTATCTAGCACTA 59.712 37.037 0.00 0.00 0.00 2.74
2778 3097 8.144478 GTCTCAAATGGATGTATCTAGCACTAA 58.856 37.037 0.00 0.00 0.00 2.24
2779 3098 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
2780 3099 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2781 3100 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2782 3101 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
2783 3102 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
2784 3103 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
2785 3104 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
2797 3116 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
2798 3117 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2799 3118 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
2800 3119 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
2801 3120 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
2802 3121 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
2803 3122 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
2804 3123 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
2805 3124 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2806 3125 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2807 3126 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2808 3127 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2809 3128 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2810 3129 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2811 3130 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2812 3131 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2813 3132 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
2814 3133 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
2815 3134 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
2816 3135 3.157087 TCCATTTGAGGGACAAGCTTTC 58.843 45.455 0.00 0.00 39.77 2.62
2817 3136 3.160269 CCATTTGAGGGACAAGCTTTCT 58.840 45.455 0.00 0.00 39.77 2.52
2818 3137 3.192212 CCATTTGAGGGACAAGCTTTCTC 59.808 47.826 0.00 2.68 39.77 2.87
2819 3138 2.169832 TTGAGGGACAAGCTTTCTCG 57.830 50.000 0.00 0.00 34.20 4.04
2820 3139 0.321671 TGAGGGACAAGCTTTCTCGG 59.678 55.000 0.00 0.00 0.00 4.63
2821 3140 0.608640 GAGGGACAAGCTTTCTCGGA 59.391 55.000 0.00 0.00 0.00 4.55
2822 3141 0.321996 AGGGACAAGCTTTCTCGGAC 59.678 55.000 0.00 0.00 0.00 4.79
2823 3142 1.014564 GGGACAAGCTTTCTCGGACG 61.015 60.000 0.00 0.00 0.00 4.79
2824 3143 1.014564 GGACAAGCTTTCTCGGACGG 61.015 60.000 0.00 0.00 0.00 4.79
2825 3144 0.038526 GACAAGCTTTCTCGGACGGA 60.039 55.000 0.00 0.00 0.00 4.69
2826 3145 0.038159 ACAAGCTTTCTCGGACGGAG 60.038 55.000 0.00 3.68 44.58 4.63
2827 3146 0.737715 CAAGCTTTCTCGGACGGAGG 60.738 60.000 9.88 0.00 43.34 4.30
2828 3147 1.889530 AAGCTTTCTCGGACGGAGGG 61.890 60.000 9.88 3.12 43.34 4.30
2829 3148 2.348888 GCTTTCTCGGACGGAGGGA 61.349 63.158 9.88 0.00 43.34 4.20
2830 3149 1.810532 CTTTCTCGGACGGAGGGAG 59.189 63.158 9.88 5.07 43.34 4.30
2891 3210 5.241728 GCCTTCTTTGTAAGAGGTTGTCATT 59.758 40.000 0.00 0.00 39.03 2.57
3009 3328 1.214589 CCTGCCAATGTTGCTCAGC 59.785 57.895 0.00 0.00 0.00 4.26
3424 3743 2.079925 GGAGCACAACATTCCTCTCAC 58.920 52.381 0.00 0.00 0.00 3.51
3699 4018 5.104735 AGGCAAGGTCTAAAGGTTCTATCAG 60.105 44.000 0.00 0.00 0.00 2.90
3911 4230 2.038387 ACCCAGATAATCCACGTTGC 57.962 50.000 0.00 0.00 0.00 4.17
4089 4408 1.127582 GCTGTGACATTGTTCTCGAGC 59.872 52.381 7.81 0.00 0.00 5.03
4113 4432 3.244387 GGAAAAGAGTGGAGAGCTGAAGT 60.244 47.826 0.00 0.00 0.00 3.01
4139 4458 3.336468 TCTCTCGGAGTAGCGGATATTC 58.664 50.000 4.69 0.00 0.00 1.75
4143 4462 1.402984 CGGAGTAGCGGATATTCTGGC 60.403 57.143 0.00 0.00 0.00 4.85
4150 4469 2.695666 AGCGGATATTCTGGCGCTATAT 59.304 45.455 7.64 6.00 34.19 0.86
4151 4470 3.133003 AGCGGATATTCTGGCGCTATATT 59.867 43.478 7.64 0.00 34.19 1.28
4152 4471 3.246226 GCGGATATTCTGGCGCTATATTG 59.754 47.826 7.64 4.76 0.00 1.90
4157 4476 2.417339 TCTGGCGCTATATTGTCGTC 57.583 50.000 7.64 0.47 0.00 4.20
4173 4492 3.005050 TGTCGTCGTCTTATGGTGTTTCT 59.995 43.478 0.00 0.00 0.00 2.52
4193 4512 4.657013 TCTGAGCATCTGTCCTATATCGT 58.343 43.478 0.00 0.00 35.36 3.73
4242 4561 5.700832 TGCCAATGTATTTCGTAGATCCATC 59.299 40.000 0.00 0.00 35.04 3.51
4281 4600 4.461992 GTAGTGCTACGTTTGCTTGAAA 57.538 40.909 13.06 0.00 0.00 2.69
4335 4654 3.261137 ACCTCTTAAGTGGCCTGTTAGTC 59.739 47.826 20.93 0.00 32.19 2.59
4346 4665 4.080751 TGGCCTGTTAGTCTTGTATTACCC 60.081 45.833 3.32 0.00 0.00 3.69
4390 4709 1.028868 GGCTGGATGCTGGAGAACAC 61.029 60.000 0.00 0.00 42.39 3.32
4466 4788 2.112815 GTTCGTGTATGCCCCTGCC 61.113 63.158 0.00 0.00 36.33 4.85
4582 4928 1.939597 CTGCAGATACGCCATGCTG 59.060 57.895 8.42 0.00 40.62 4.41
4583 4929 0.531311 CTGCAGATACGCCATGCTGA 60.531 55.000 8.42 0.00 40.19 4.26
4585 4931 1.502163 GCAGATACGCCATGCTGACC 61.502 60.000 0.00 0.00 37.00 4.02
4586 4932 0.882042 CAGATACGCCATGCTGACCC 60.882 60.000 0.00 0.00 0.00 4.46
4587 4933 1.050988 AGATACGCCATGCTGACCCT 61.051 55.000 0.00 0.00 0.00 4.34
4588 4934 0.601311 GATACGCCATGCTGACCCTC 60.601 60.000 0.00 0.00 0.00 4.30
4589 4935 2.044806 ATACGCCATGCTGACCCTCC 62.045 60.000 0.00 0.00 0.00 4.30
4590 4936 3.790437 CGCCATGCTGACCCTCCT 61.790 66.667 0.00 0.00 0.00 3.69
4591 4937 2.191641 GCCATGCTGACCCTCCTC 59.808 66.667 0.00 0.00 0.00 3.71
4592 4938 2.914289 CCATGCTGACCCTCCTCC 59.086 66.667 0.00 0.00 0.00 4.30
4593 4939 2.750657 CCATGCTGACCCTCCTCCC 61.751 68.421 0.00 0.00 0.00 4.30
4594 4940 1.692042 CATGCTGACCCTCCTCCCT 60.692 63.158 0.00 0.00 0.00 4.20
4595 4941 1.083706 ATGCTGACCCTCCTCCCTT 59.916 57.895 0.00 0.00 0.00 3.95
4596 4942 0.551131 ATGCTGACCCTCCTCCCTTT 60.551 55.000 0.00 0.00 0.00 3.11
4597 4943 0.118346 TGCTGACCCTCCTCCCTTTA 59.882 55.000 0.00 0.00 0.00 1.85
4598 4944 1.286248 GCTGACCCTCCTCCCTTTAA 58.714 55.000 0.00 0.00 0.00 1.52
4599 4945 1.633945 GCTGACCCTCCTCCCTTTAAA 59.366 52.381 0.00 0.00 0.00 1.52
4600 4946 2.242452 GCTGACCCTCCTCCCTTTAAAT 59.758 50.000 0.00 0.00 0.00 1.40
4601 4947 3.309193 GCTGACCCTCCTCCCTTTAAATT 60.309 47.826 0.00 0.00 0.00 1.82
4602 4948 4.527944 CTGACCCTCCTCCCTTTAAATTC 58.472 47.826 0.00 0.00 0.00 2.17
4603 4949 3.268595 TGACCCTCCTCCCTTTAAATTCC 59.731 47.826 0.00 0.00 0.00 3.01
4604 4950 3.268595 GACCCTCCTCCCTTTAAATTCCA 59.731 47.826 0.00 0.00 0.00 3.53
4654 5002 2.724174 GCACAGTTACATTTTCGCCAAC 59.276 45.455 0.00 0.00 0.00 3.77
4676 5024 0.248215 GCGACATGGATTTTCCTGCG 60.248 55.000 0.00 0.00 37.46 5.18
4677 5025 0.248215 CGACATGGATTTTCCTGCGC 60.248 55.000 0.00 0.00 37.46 6.09
4698 5046 4.086105 CGCGAACAGTAAAAATCCGAAAAC 59.914 41.667 0.00 0.00 0.00 2.43
4701 5049 6.143278 GCGAACAGTAAAAATCCGAAAACAAT 59.857 34.615 0.00 0.00 0.00 2.71
4703 5051 8.837059 CGAACAGTAAAAATCCGAAAACAATAG 58.163 33.333 0.00 0.00 0.00 1.73
4705 5053 9.673454 AACAGTAAAAATCCGAAAACAATAGAC 57.327 29.630 0.00 0.00 0.00 2.59
4706 5054 8.842280 ACAGTAAAAATCCGAAAACAATAGACA 58.158 29.630 0.00 0.00 0.00 3.41
4781 5198 7.624360 TTTCACTTACAAAAGACATCTGTGT 57.376 32.000 4.43 4.43 42.49 3.72
4783 5200 7.709269 TCACTTACAAAAGACATCTGTGTAC 57.291 36.000 5.57 0.00 39.09 2.90
4787 5204 1.710013 AAAGACATCTGTGTACGCCG 58.290 50.000 3.51 0.00 39.09 6.46
4791 5208 0.889994 ACATCTGTGTACGCCGGTAA 59.110 50.000 1.90 0.00 36.63 2.85
4792 5209 1.273048 ACATCTGTGTACGCCGGTAAA 59.727 47.619 1.90 0.00 36.63 2.01
4793 5210 1.657094 CATCTGTGTACGCCGGTAAAC 59.343 52.381 1.90 0.00 37.37 2.01
4797 5214 0.599728 GTGTACGCCGGTAAACCACA 60.600 55.000 1.90 0.00 31.72 4.17
4802 5219 1.202279 ACGCCGGTAAACCACAAAAAC 60.202 47.619 1.90 0.00 35.14 2.43
4807 5224 4.333095 GCCGGTAAACCACAAAAACAAAAT 59.667 37.500 1.90 0.00 35.14 1.82
4823 5240 9.500785 AAAAACAAAATTCAGGACTCAAAAAGA 57.499 25.926 0.00 0.00 0.00 2.52
4824 5241 8.479313 AAACAAAATTCAGGACTCAAAAAGAC 57.521 30.769 0.00 0.00 0.00 3.01
4825 5242 6.265577 ACAAAATTCAGGACTCAAAAAGACG 58.734 36.000 0.00 0.00 0.00 4.18
4826 5243 4.489679 AATTCAGGACTCAAAAAGACGC 57.510 40.909 0.00 0.00 0.00 5.19
4827 5244 2.613026 TCAGGACTCAAAAAGACGCA 57.387 45.000 0.00 0.00 0.00 5.24
4828 5245 3.126001 TCAGGACTCAAAAAGACGCAT 57.874 42.857 0.00 0.00 0.00 4.73
4829 5246 3.476552 TCAGGACTCAAAAAGACGCATT 58.523 40.909 0.00 0.00 0.00 3.56
4830 5247 3.882888 TCAGGACTCAAAAAGACGCATTT 59.117 39.130 0.00 0.00 0.00 2.32
4831 5248 3.976942 CAGGACTCAAAAAGACGCATTTG 59.023 43.478 0.00 0.00 37.77 2.32
4901 5321 2.036992 TGTGGCGAAATTTTGCAGGATT 59.963 40.909 27.54 0.00 39.39 3.01
4911 5331 7.382218 CGAAATTTTGCAGGATTTTAGAACACT 59.618 33.333 9.76 0.00 0.00 3.55
4912 5332 8.962884 AAATTTTGCAGGATTTTAGAACACTT 57.037 26.923 4.15 0.00 0.00 3.16
4913 5333 7.951530 ATTTTGCAGGATTTTAGAACACTTG 57.048 32.000 0.00 0.00 0.00 3.16
4928 5348 2.872245 ACACTTGTTGATGTTCGTCAGG 59.128 45.455 0.00 0.00 0.00 3.86
4975 5399 9.967245 CAATTTTATCAGAAATTGCTGTTCATG 57.033 29.630 13.35 2.03 44.92 3.07
4976 5400 7.585286 TTTTATCAGAAATTGCTGTTCATGC 57.415 32.000 13.35 0.00 37.20 4.06
4977 5401 3.206034 TCAGAAATTGCTGTTCATGCG 57.794 42.857 13.35 0.00 37.20 4.73
4978 5402 2.095110 TCAGAAATTGCTGTTCATGCGG 60.095 45.455 13.35 0.00 37.20 5.69
5008 5432 2.438021 TGCTACAAACCTGTGGAGAACT 59.562 45.455 0.00 0.00 36.15 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.674362 CGCCTCTTACCAACTAAATTTGCC 60.674 45.833 0.00 0.00 0.00 4.52
1 2 4.412207 CGCCTCTTACCAACTAAATTTGC 58.588 43.478 0.00 0.00 0.00 3.68
2 3 4.674362 GCCGCCTCTTACCAACTAAATTTG 60.674 45.833 0.00 0.00 0.00 2.32
3 4 3.442625 GCCGCCTCTTACCAACTAAATTT 59.557 43.478 0.00 0.00 0.00 1.82
4 5 3.014623 GCCGCCTCTTACCAACTAAATT 58.985 45.455 0.00 0.00 0.00 1.82
5 6 2.026636 TGCCGCCTCTTACCAACTAAAT 60.027 45.455 0.00 0.00 0.00 1.40
6 7 1.348366 TGCCGCCTCTTACCAACTAAA 59.652 47.619 0.00 0.00 0.00 1.85
7 8 0.978151 TGCCGCCTCTTACCAACTAA 59.022 50.000 0.00 0.00 0.00 2.24
8 9 0.978151 TTGCCGCCTCTTACCAACTA 59.022 50.000 0.00 0.00 0.00 2.24
9 10 0.109723 TTTGCCGCCTCTTACCAACT 59.890 50.000 0.00 0.00 0.00 3.16
10 11 0.955905 TTTTGCCGCCTCTTACCAAC 59.044 50.000 0.00 0.00 0.00 3.77
11 12 1.816224 GATTTTGCCGCCTCTTACCAA 59.184 47.619 0.00 0.00 0.00 3.67
12 13 1.459450 GATTTTGCCGCCTCTTACCA 58.541 50.000 0.00 0.00 0.00 3.25
13 14 0.738975 GGATTTTGCCGCCTCTTACC 59.261 55.000 0.00 0.00 0.00 2.85
14 15 1.401905 CAGGATTTTGCCGCCTCTTAC 59.598 52.381 0.00 0.00 0.00 2.34
15 16 1.750193 CAGGATTTTGCCGCCTCTTA 58.250 50.000 0.00 0.00 0.00 2.10
16 17 1.598701 GCAGGATTTTGCCGCCTCTT 61.599 55.000 0.00 0.00 38.13 2.85
17 18 2.048603 GCAGGATTTTGCCGCCTCT 61.049 57.895 0.00 0.00 38.13 3.69
18 19 1.997928 GAGCAGGATTTTGCCGCCTC 61.998 60.000 0.00 0.00 45.18 4.70
19 20 2.036256 AGCAGGATTTTGCCGCCT 59.964 55.556 0.00 0.00 45.18 5.52
20 21 1.598701 AAGAGCAGGATTTTGCCGCC 61.599 55.000 0.00 0.00 45.18 6.13
21 22 0.244721 AAAGAGCAGGATTTTGCCGC 59.755 50.000 0.00 0.00 45.18 6.53
22 23 2.730550 AAAAGAGCAGGATTTTGCCG 57.269 45.000 0.00 0.00 45.18 5.69
41 42 9.281119 TTCTAGTTAGAAAGCTTTTGCGGCAAA 62.281 37.037 23.23 23.23 42.83 3.68
42 43 7.899006 TTCTAGTTAGAAAGCTTTTGCGGCAA 61.899 38.462 14.05 12.11 42.83 4.52
43 44 6.486735 TTCTAGTTAGAAAGCTTTTGCGGCA 61.487 40.000 14.05 0.00 42.83 5.69
44 45 4.083484 TTCTAGTTAGAAAGCTTTTGCGGC 60.083 41.667 14.05 0.00 42.83 6.53
45 46 5.607119 TTCTAGTTAGAAAGCTTTTGCGG 57.393 39.130 14.05 1.25 42.83 5.69
85 86 9.603921 GGTGGCTAGTTTAGTTGTATGTATTTA 57.396 33.333 0.00 0.00 0.00 1.40
86 87 8.326529 AGGTGGCTAGTTTAGTTGTATGTATTT 58.673 33.333 0.00 0.00 0.00 1.40
87 88 7.858498 AGGTGGCTAGTTTAGTTGTATGTATT 58.142 34.615 0.00 0.00 0.00 1.89
88 89 7.433537 AGGTGGCTAGTTTAGTTGTATGTAT 57.566 36.000 0.00 0.00 0.00 2.29
89 90 6.862469 AGGTGGCTAGTTTAGTTGTATGTA 57.138 37.500 0.00 0.00 0.00 2.29
90 91 5.757099 AGGTGGCTAGTTTAGTTGTATGT 57.243 39.130 0.00 0.00 0.00 2.29
91 92 8.556213 TTTTAGGTGGCTAGTTTAGTTGTATG 57.444 34.615 0.00 0.00 0.00 2.39
92 93 9.749340 AATTTTAGGTGGCTAGTTTAGTTGTAT 57.251 29.630 0.00 0.00 0.00 2.29
94 95 9.749340 ATAATTTTAGGTGGCTAGTTTAGTTGT 57.251 29.630 0.00 0.00 0.00 3.32
97 98 8.683615 GCAATAATTTTAGGTGGCTAGTTTAGT 58.316 33.333 0.00 0.00 0.00 2.24
98 99 7.855904 CGCAATAATTTTAGGTGGCTAGTTTAG 59.144 37.037 0.00 0.00 0.00 1.85
99 100 7.201750 CCGCAATAATTTTAGGTGGCTAGTTTA 60.202 37.037 0.00 0.00 0.00 2.01
100 101 6.405397 CCGCAATAATTTTAGGTGGCTAGTTT 60.405 38.462 0.00 0.00 0.00 2.66
101 102 5.067283 CCGCAATAATTTTAGGTGGCTAGTT 59.933 40.000 0.00 0.00 0.00 2.24
102 103 4.578928 CCGCAATAATTTTAGGTGGCTAGT 59.421 41.667 0.00 0.00 0.00 2.57
103 104 4.578928 ACCGCAATAATTTTAGGTGGCTAG 59.421 41.667 0.00 0.00 32.47 3.42
104 105 4.528920 ACCGCAATAATTTTAGGTGGCTA 58.471 39.130 0.00 0.00 32.47 3.93
105 106 3.361786 ACCGCAATAATTTTAGGTGGCT 58.638 40.909 0.00 0.00 32.47 4.75
106 107 3.490249 GGACCGCAATAATTTTAGGTGGC 60.490 47.826 0.00 0.00 32.47 5.01
107 108 3.951680 AGGACCGCAATAATTTTAGGTGG 59.048 43.478 0.00 0.00 35.32 4.61
108 109 5.576447 AAGGACCGCAATAATTTTAGGTG 57.424 39.130 0.00 0.00 31.35 4.00
109 110 6.599356 AAAAGGACCGCAATAATTTTAGGT 57.401 33.333 0.00 0.00 34.27 3.08
110 111 7.320399 AGAAAAAGGACCGCAATAATTTTAGG 58.680 34.615 0.00 0.00 0.00 2.69
111 112 8.026607 TGAGAAAAAGGACCGCAATAATTTTAG 58.973 33.333 0.00 0.00 0.00 1.85
112 113 7.887381 TGAGAAAAAGGACCGCAATAATTTTA 58.113 30.769 0.00 0.00 0.00 1.52
113 114 6.754193 TGAGAAAAAGGACCGCAATAATTTT 58.246 32.000 0.00 0.00 0.00 1.82
114 115 6.339587 TGAGAAAAAGGACCGCAATAATTT 57.660 33.333 0.00 0.00 0.00 1.82
115 116 5.622233 GCTGAGAAAAAGGACCGCAATAATT 60.622 40.000 0.00 0.00 0.00 1.40
116 117 4.142381 GCTGAGAAAAAGGACCGCAATAAT 60.142 41.667 0.00 0.00 0.00 1.28
117 118 3.190535 GCTGAGAAAAAGGACCGCAATAA 59.809 43.478 0.00 0.00 0.00 1.40
118 119 2.747446 GCTGAGAAAAAGGACCGCAATA 59.253 45.455 0.00 0.00 0.00 1.90
119 120 1.541588 GCTGAGAAAAAGGACCGCAAT 59.458 47.619 0.00 0.00 0.00 3.56
120 121 0.951558 GCTGAGAAAAAGGACCGCAA 59.048 50.000 0.00 0.00 0.00 4.85
121 122 0.108585 AGCTGAGAAAAAGGACCGCA 59.891 50.000 0.00 0.00 0.00 5.69
122 123 1.239347 AAGCTGAGAAAAAGGACCGC 58.761 50.000 0.00 0.00 0.00 5.68
123 124 3.565902 AGAAAAGCTGAGAAAAAGGACCG 59.434 43.478 0.00 0.00 0.00 4.79
124 125 6.616017 CATAGAAAAGCTGAGAAAAAGGACC 58.384 40.000 0.00 0.00 0.00 4.46
125 126 6.089476 GCATAGAAAAGCTGAGAAAAAGGAC 58.911 40.000 0.00 0.00 0.00 3.85
126 127 5.769662 TGCATAGAAAAGCTGAGAAAAAGGA 59.230 36.000 0.00 0.00 0.00 3.36
127 128 6.017400 TGCATAGAAAAGCTGAGAAAAAGG 57.983 37.500 0.00 0.00 0.00 3.11
128 129 8.530269 AATTGCATAGAAAAGCTGAGAAAAAG 57.470 30.769 0.00 0.00 0.00 2.27
129 130 8.891671 AAATTGCATAGAAAAGCTGAGAAAAA 57.108 26.923 0.00 0.00 0.00 1.94
130 131 8.891671 AAAATTGCATAGAAAAGCTGAGAAAA 57.108 26.923 0.00 0.00 0.00 2.29
131 132 8.891671 AAAAATTGCATAGAAAAGCTGAGAAA 57.108 26.923 0.00 0.00 0.00 2.52
132 133 8.143193 TGAAAAATTGCATAGAAAAGCTGAGAA 58.857 29.630 0.00 0.00 0.00 2.87
133 134 7.660112 TGAAAAATTGCATAGAAAAGCTGAGA 58.340 30.769 0.00 0.00 0.00 3.27
134 135 7.878477 TGAAAAATTGCATAGAAAAGCTGAG 57.122 32.000 0.00 0.00 0.00 3.35
135 136 8.659925 TTTGAAAAATTGCATAGAAAAGCTGA 57.340 26.923 0.00 0.00 0.00 4.26
136 137 8.767085 TCTTTGAAAAATTGCATAGAAAAGCTG 58.233 29.630 0.00 0.00 0.00 4.24
137 138 8.891671 TCTTTGAAAAATTGCATAGAAAAGCT 57.108 26.923 0.00 0.00 0.00 3.74
138 139 8.768019 ACTCTTTGAAAAATTGCATAGAAAAGC 58.232 29.630 0.00 0.00 0.00 3.51
140 141 8.550376 GCACTCTTTGAAAAATTGCATAGAAAA 58.450 29.630 0.00 0.00 0.00 2.29
141 142 7.927629 AGCACTCTTTGAAAAATTGCATAGAAA 59.072 29.630 0.00 0.00 0.00 2.52
142 143 7.436118 AGCACTCTTTGAAAAATTGCATAGAA 58.564 30.769 0.00 0.00 0.00 2.10
143 144 6.985117 AGCACTCTTTGAAAAATTGCATAGA 58.015 32.000 0.00 0.00 0.00 1.98
144 145 7.008992 GCTAGCACTCTTTGAAAAATTGCATAG 59.991 37.037 10.63 0.00 0.00 2.23
145 146 6.808212 GCTAGCACTCTTTGAAAAATTGCATA 59.192 34.615 10.63 0.00 0.00 3.14
146 147 5.636543 GCTAGCACTCTTTGAAAAATTGCAT 59.363 36.000 10.63 0.00 0.00 3.96
147 148 4.984161 GCTAGCACTCTTTGAAAAATTGCA 59.016 37.500 10.63 0.00 0.00 4.08
148 149 4.089065 CGCTAGCACTCTTTGAAAAATTGC 59.911 41.667 16.45 0.00 0.00 3.56
149 150 5.451908 TCGCTAGCACTCTTTGAAAAATTG 58.548 37.500 16.45 0.00 0.00 2.32
150 151 5.470098 TCTCGCTAGCACTCTTTGAAAAATT 59.530 36.000 16.45 0.00 0.00 1.82
151 152 4.997395 TCTCGCTAGCACTCTTTGAAAAAT 59.003 37.500 16.45 0.00 0.00 1.82
152 153 4.377021 TCTCGCTAGCACTCTTTGAAAAA 58.623 39.130 16.45 0.00 0.00 1.94
153 154 3.990092 TCTCGCTAGCACTCTTTGAAAA 58.010 40.909 16.45 0.00 0.00 2.29
154 155 3.255888 TCTCTCGCTAGCACTCTTTGAAA 59.744 43.478 16.45 0.00 0.00 2.69
155 156 2.820197 TCTCTCGCTAGCACTCTTTGAA 59.180 45.455 16.45 0.00 0.00 2.69
156 157 2.421775 CTCTCTCGCTAGCACTCTTTGA 59.578 50.000 16.45 0.57 0.00 2.69
157 158 2.479389 CCTCTCTCGCTAGCACTCTTTG 60.479 54.545 16.45 0.00 0.00 2.77
158 159 1.748493 CCTCTCTCGCTAGCACTCTTT 59.252 52.381 16.45 0.00 0.00 2.52
159 160 1.340600 ACCTCTCTCGCTAGCACTCTT 60.341 52.381 16.45 0.00 0.00 2.85
160 161 0.254747 ACCTCTCTCGCTAGCACTCT 59.745 55.000 16.45 0.00 0.00 3.24
161 162 1.099689 AACCTCTCTCGCTAGCACTC 58.900 55.000 16.45 0.00 0.00 3.51
162 163 0.814457 CAACCTCTCTCGCTAGCACT 59.186 55.000 16.45 0.00 0.00 4.40
163 164 0.811915 TCAACCTCTCTCGCTAGCAC 59.188 55.000 16.45 0.00 0.00 4.40
164 165 1.098869 CTCAACCTCTCTCGCTAGCA 58.901 55.000 16.45 0.92 0.00 3.49
165 166 1.333619 CTCTCAACCTCTCTCGCTAGC 59.666 57.143 4.06 4.06 0.00 3.42
166 167 2.912771 TCTCTCAACCTCTCTCGCTAG 58.087 52.381 0.00 0.00 0.00 3.42
167 168 3.569194 ATCTCTCAACCTCTCTCGCTA 57.431 47.619 0.00 0.00 0.00 4.26
168 169 2.435372 ATCTCTCAACCTCTCTCGCT 57.565 50.000 0.00 0.00 0.00 4.93
169 170 3.472652 TCTATCTCTCAACCTCTCTCGC 58.527 50.000 0.00 0.00 0.00 5.03
170 171 5.123227 AGTTCTATCTCTCAACCTCTCTCG 58.877 45.833 0.00 0.00 0.00 4.04
171 172 6.601613 TGAAGTTCTATCTCTCAACCTCTCTC 59.398 42.308 4.17 0.00 0.00 3.20
172 173 6.489603 TGAAGTTCTATCTCTCAACCTCTCT 58.510 40.000 4.17 0.00 0.00 3.10
173 174 6.767524 TGAAGTTCTATCTCTCAACCTCTC 57.232 41.667 4.17 0.00 0.00 3.20
174 175 8.691797 GTTATGAAGTTCTATCTCTCAACCTCT 58.308 37.037 4.17 0.00 0.00 3.69
175 176 8.470805 TGTTATGAAGTTCTATCTCTCAACCTC 58.529 37.037 4.17 0.00 0.00 3.85
176 177 8.254508 GTGTTATGAAGTTCTATCTCTCAACCT 58.745 37.037 4.17 0.00 0.00 3.50
177 178 8.254508 AGTGTTATGAAGTTCTATCTCTCAACC 58.745 37.037 4.17 0.00 0.00 3.77
178 179 9.081997 CAGTGTTATGAAGTTCTATCTCTCAAC 57.918 37.037 4.17 0.00 0.00 3.18
179 180 9.025041 TCAGTGTTATGAAGTTCTATCTCTCAA 57.975 33.333 4.17 0.00 0.00 3.02
180 181 8.581253 TCAGTGTTATGAAGTTCTATCTCTCA 57.419 34.615 4.17 0.00 0.00 3.27
181 182 9.677567 GATCAGTGTTATGAAGTTCTATCTCTC 57.322 37.037 4.17 0.00 31.76 3.20
182 183 9.420118 AGATCAGTGTTATGAAGTTCTATCTCT 57.580 33.333 4.17 0.00 31.76 3.10
183 184 9.677567 GAGATCAGTGTTATGAAGTTCTATCTC 57.322 37.037 4.17 0.00 31.76 2.75
184 185 8.637986 GGAGATCAGTGTTATGAAGTTCTATCT 58.362 37.037 4.17 0.00 31.76 1.98
185 186 7.870445 GGGAGATCAGTGTTATGAAGTTCTATC 59.130 40.741 4.17 0.00 31.76 2.08
186 187 7.566879 AGGGAGATCAGTGTTATGAAGTTCTAT 59.433 37.037 4.17 0.00 31.76 1.98
187 188 6.897966 AGGGAGATCAGTGTTATGAAGTTCTA 59.102 38.462 4.17 0.00 31.76 2.10
188 189 5.723887 AGGGAGATCAGTGTTATGAAGTTCT 59.276 40.000 4.17 0.00 31.76 3.01
189 190 5.983540 AGGGAGATCAGTGTTATGAAGTTC 58.016 41.667 0.00 0.00 31.76 3.01
190 191 6.214412 AGAAGGGAGATCAGTGTTATGAAGTT 59.786 38.462 0.00 0.00 31.76 2.66
191 192 5.723887 AGAAGGGAGATCAGTGTTATGAAGT 59.276 40.000 0.00 0.00 31.76 3.01
192 193 6.232581 AGAAGGGAGATCAGTGTTATGAAG 57.767 41.667 0.00 0.00 31.76 3.02
193 194 7.400339 AGTTAGAAGGGAGATCAGTGTTATGAA 59.600 37.037 0.00 0.00 31.76 2.57
194 195 6.897966 AGTTAGAAGGGAGATCAGTGTTATGA 59.102 38.462 0.00 0.00 0.00 2.15
195 196 7.118496 AGTTAGAAGGGAGATCAGTGTTATG 57.882 40.000 0.00 0.00 0.00 1.90
196 197 7.741554 AAGTTAGAAGGGAGATCAGTGTTAT 57.258 36.000 0.00 0.00 0.00 1.89
197 198 7.554959 AAAGTTAGAAGGGAGATCAGTGTTA 57.445 36.000 0.00 0.00 0.00 2.41
198 199 6.441088 AAAGTTAGAAGGGAGATCAGTGTT 57.559 37.500 0.00 0.00 0.00 3.32
199 200 6.043243 TGAAAAGTTAGAAGGGAGATCAGTGT 59.957 38.462 0.00 0.00 0.00 3.55
200 201 6.467677 TGAAAAGTTAGAAGGGAGATCAGTG 58.532 40.000 0.00 0.00 0.00 3.66
201 202 6.688073 TGAAAAGTTAGAAGGGAGATCAGT 57.312 37.500 0.00 0.00 0.00 3.41
202 203 7.663493 ACTTTGAAAAGTTAGAAGGGAGATCAG 59.337 37.037 2.56 0.00 46.52 2.90
203 204 7.518188 ACTTTGAAAAGTTAGAAGGGAGATCA 58.482 34.615 2.56 0.00 46.52 2.92
204 205 7.987750 ACTTTGAAAAGTTAGAAGGGAGATC 57.012 36.000 2.56 0.00 46.52 2.75
205 206 9.286170 GTTACTTTGAAAAGTTAGAAGGGAGAT 57.714 33.333 13.30 0.00 46.52 2.75
206 207 8.269317 TGTTACTTTGAAAAGTTAGAAGGGAGA 58.731 33.333 13.30 0.00 46.52 3.71
207 208 8.446599 TGTTACTTTGAAAAGTTAGAAGGGAG 57.553 34.615 13.30 0.00 46.52 4.30
208 209 8.990163 ATGTTACTTTGAAAAGTTAGAAGGGA 57.010 30.769 13.30 0.00 46.52 4.20
209 210 8.297426 GGATGTTACTTTGAAAAGTTAGAAGGG 58.703 37.037 13.30 0.00 46.52 3.95
210 211 8.846211 TGGATGTTACTTTGAAAAGTTAGAAGG 58.154 33.333 13.30 0.00 46.52 3.46
215 216 8.215050 TCCTCTGGATGTTACTTTGAAAAGTTA 58.785 33.333 13.30 2.33 46.52 2.24
250 251 8.082334 TGTTTTTGTTTTCCTTTGTCTCTTTG 57.918 30.769 0.00 0.00 0.00 2.77
260 261 6.619744 CATGCCTTTTGTTTTTGTTTTCCTT 58.380 32.000 0.00 0.00 0.00 3.36
294 295 2.178890 GCTGAGATCCAAGGCGCAG 61.179 63.158 10.83 0.00 35.43 5.18
295 296 2.124983 GCTGAGATCCAAGGCGCA 60.125 61.111 10.83 0.00 0.00 6.09
297 298 1.591059 CTCGCTGAGATCCAAGGCG 60.591 63.158 11.80 11.80 45.93 5.52
298 299 0.392336 ATCTCGCTGAGATCCAAGGC 59.608 55.000 13.15 0.00 45.03 4.35
299 300 4.244066 CATTATCTCGCTGAGATCCAAGG 58.756 47.826 19.61 10.83 45.03 3.61
300 301 4.244066 CCATTATCTCGCTGAGATCCAAG 58.756 47.826 19.61 11.19 45.03 3.61
361 362 4.184629 ACTGCGTTATCTTCCTGATCAAC 58.815 43.478 0.00 0.00 36.65 3.18
402 403 0.461870 TGCTCGATGGTTTGGATCGG 60.462 55.000 0.00 0.00 42.43 4.18
417 418 2.682856 TGAGGTTTGTGTGAGTTTGCTC 59.317 45.455 0.00 0.00 41.97 4.26
432 433 7.557719 TCTTTTCAGTTTGATTCTCTTGAGGTT 59.442 33.333 0.00 0.00 0.00 3.50
435 436 8.068977 CACTCTTTTCAGTTTGATTCTCTTGAG 58.931 37.037 0.00 0.00 0.00 3.02
436 437 7.770433 TCACTCTTTTCAGTTTGATTCTCTTGA 59.230 33.333 0.00 0.00 0.00 3.02
438 439 8.401709 GTTCACTCTTTTCAGTTTGATTCTCTT 58.598 33.333 0.00 0.00 0.00 2.85
439 440 7.254590 CGTTCACTCTTTTCAGTTTGATTCTCT 60.255 37.037 0.00 0.00 0.00 3.10
440 441 6.848296 CGTTCACTCTTTTCAGTTTGATTCTC 59.152 38.462 0.00 0.00 0.00 2.87
451 459 3.118555 TGACCTTCCGTTCACTCTTTTCA 60.119 43.478 0.00 0.00 0.00 2.69
457 465 0.966920 TCCTGACCTTCCGTTCACTC 59.033 55.000 0.00 0.00 0.00 3.51
459 467 0.966920 TCTCCTGACCTTCCGTTCAC 59.033 55.000 0.00 0.00 0.00 3.18
474 483 1.348008 TGGGCCTGATGATGGTCTCC 61.348 60.000 4.53 0.00 0.00 3.71
715 737 1.927895 AAGAATCGGTCTGATGACGC 58.072 50.000 0.00 0.00 43.79 5.19
798 820 4.803908 CCAGAAGGGGCCGGAAGC 62.804 72.222 5.05 0.00 42.60 3.86
799 821 1.926426 ATTCCAGAAGGGGCCGGAAG 61.926 60.000 5.05 0.00 40.71 3.46
800 822 1.921869 GATTCCAGAAGGGGCCGGAA 61.922 60.000 5.05 11.55 41.57 4.30
801 823 2.286121 ATTCCAGAAGGGGCCGGA 60.286 61.111 5.05 0.00 37.22 5.14
886 908 0.108281 AGAGAGACGACGGACGATGA 60.108 55.000 6.90 0.00 45.77 2.92
887 909 0.302288 GAGAGAGACGACGGACGATG 59.698 60.000 6.90 0.00 45.77 3.84
888 910 0.810823 GGAGAGAGACGACGGACGAT 60.811 60.000 6.90 0.00 45.77 3.73
891 913 2.114051 GGGGAGAGAGACGACGGAC 61.114 68.421 0.00 0.00 0.00 4.79
911 933 4.301027 CTACCAGCGGGGGCGATC 62.301 72.222 8.08 0.00 42.91 3.69
966 988 0.184933 CCTCACACTTCCCCACCAAA 59.815 55.000 0.00 0.00 0.00 3.28
1202 1228 4.578516 CGACTACATGAGAGGAATCAGAGT 59.421 45.833 0.00 0.00 31.44 3.24
1206 1232 2.033424 CGCGACTACATGAGAGGAATCA 59.967 50.000 0.00 0.00 0.00 2.57
1450 1486 2.401583 ACCGCATACACATCACATGT 57.598 45.000 0.00 0.00 46.22 3.21
1505 1541 0.034863 TAATGTGGGGAGGGAAACGC 60.035 55.000 0.00 0.00 0.00 4.84
1635 1687 3.978672 AGTTAGTGGTCTTGGTTACCCTT 59.021 43.478 0.00 0.00 36.06 3.95
1660 1712 4.037446 TGGAAGAACAAAGGGTTTCAATCG 59.963 41.667 0.00 0.00 40.63 3.34
1755 1807 0.815734 TTAGACAGCGGACCAGTAGC 59.184 55.000 0.00 0.00 0.00 3.58
1766 1818 5.350365 TCACACGGTGAAATTATTAGACAGC 59.650 40.000 16.29 0.00 39.78 4.40
1840 1893 6.948309 AGGCAAAGGATAATAGTCACAAAGTT 59.052 34.615 0.00 0.00 0.00 2.66
1841 1894 6.485171 AGGCAAAGGATAATAGTCACAAAGT 58.515 36.000 0.00 0.00 0.00 2.66
1918 1971 8.642432 TCCAAATTACAAAATGGTGTGTCATTA 58.358 29.630 0.00 0.00 36.45 1.90
2144 2197 5.552178 GTGACCCTACCAGGATTTGATATC 58.448 45.833 0.00 0.00 37.67 1.63
2173 2228 9.994957 ACTTTAACAAGGAAGAAGGGTACCGTG 62.995 44.444 8.10 0.00 44.66 4.94
2174 2229 8.103288 ACTTTAACAAGGAAGAAGGGTACCGT 62.103 42.308 5.65 2.83 44.66 4.83
2175 2230 5.744007 ACTTTAACAAGGAAGAAGGGTACCG 60.744 44.000 5.65 0.00 44.66 4.02
2176 2231 5.628130 ACTTTAACAAGGAAGAAGGGTACC 58.372 41.667 2.17 2.17 41.57 3.34
2321 2400 2.099098 GGCATGGGCACACATAAGTTAC 59.901 50.000 0.00 0.00 43.71 2.50
2325 2404 2.118132 GGGCATGGGCACACATAAG 58.882 57.895 0.00 0.00 45.12 1.73
2550 2699 6.796705 TTAACTAGCCTAGCAAACAAAGAC 57.203 37.500 0.00 0.00 0.00 3.01
2633 2788 0.250901 ATCCCAAGGCTGTGTGACAC 60.251 55.000 9.14 9.14 34.56 3.67
2715 3034 2.599408 TTTCAGACGGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
2716 3035 3.955650 TTTTTCAGACGGAGGGAGTAG 57.044 47.619 0.00 0.00 0.00 2.57
2740 3059 2.727123 TTTGAGACAAGCTTGGGACA 57.273 45.000 29.18 20.88 0.00 4.02
2741 3060 2.229784 CCATTTGAGACAAGCTTGGGAC 59.770 50.000 29.18 19.11 0.00 4.46
2742 3061 2.108075 TCCATTTGAGACAAGCTTGGGA 59.892 45.455 29.18 19.60 0.00 4.37
2744 3063 3.508793 ACATCCATTTGAGACAAGCTTGG 59.491 43.478 29.18 10.12 0.00 3.61
2745 3064 4.778534 ACATCCATTTGAGACAAGCTTG 57.221 40.909 24.84 24.84 0.00 4.01
2746 3065 6.421485 AGATACATCCATTTGAGACAAGCTT 58.579 36.000 0.00 0.00 0.00 3.74
2747 3066 5.999044 AGATACATCCATTTGAGACAAGCT 58.001 37.500 0.00 0.00 0.00 3.74
2748 3067 6.073331 GCTAGATACATCCATTTGAGACAAGC 60.073 42.308 0.00 0.00 0.00 4.01
2749 3068 6.988580 TGCTAGATACATCCATTTGAGACAAG 59.011 38.462 0.00 0.00 0.00 3.16
2750 3069 6.763135 GTGCTAGATACATCCATTTGAGACAA 59.237 38.462 0.00 0.00 0.00 3.18
2751 3070 6.098838 AGTGCTAGATACATCCATTTGAGACA 59.901 38.462 0.00 0.00 0.00 3.41
2752 3071 6.520272 AGTGCTAGATACATCCATTTGAGAC 58.480 40.000 0.00 0.00 0.00 3.36
2753 3072 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
2754 3073 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2755 3074 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2756 3075 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
2757 3076 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
2758 3077 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
2759 3078 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
2760 3079 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2761 3080 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
2773 3092 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
2774 3093 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
2775 3094 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
2776 3095 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
2777 3096 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
2778 3097 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
2779 3098 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
2780 3099 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
2781 3100 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
2782 3101 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
2783 3102 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2784 3103 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2785 3104 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2786 3105 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2787 3106 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
2788 3107 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
2789 3108 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
2790 3109 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
2791 3110 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
2792 3111 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
2793 3112 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2794 3113 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
2795 3114 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
2796 3115 3.160269 AGAAAGCTTGTCCCTCAAATGG 58.840 45.455 0.00 0.00 35.48 3.16
2797 3116 3.120060 CGAGAAAGCTTGTCCCTCAAATG 60.120 47.826 0.00 0.00 35.48 2.32
2798 3117 3.077359 CGAGAAAGCTTGTCCCTCAAAT 58.923 45.455 0.00 0.00 35.48 2.32
2799 3118 2.494059 CGAGAAAGCTTGTCCCTCAAA 58.506 47.619 0.00 0.00 35.48 2.69
2800 3119 1.270839 CCGAGAAAGCTTGTCCCTCAA 60.271 52.381 0.00 0.00 34.61 3.02
2801 3120 0.321671 CCGAGAAAGCTTGTCCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
2802 3121 0.608640 TCCGAGAAAGCTTGTCCCTC 59.391 55.000 0.00 4.16 0.00 4.30
2803 3122 0.321996 GTCCGAGAAAGCTTGTCCCT 59.678 55.000 0.00 0.00 0.00 4.20
2804 3123 1.014564 CGTCCGAGAAAGCTTGTCCC 61.015 60.000 0.00 0.00 0.00 4.46
2805 3124 1.014564 CCGTCCGAGAAAGCTTGTCC 61.015 60.000 0.00 0.00 0.00 4.02
2806 3125 0.038526 TCCGTCCGAGAAAGCTTGTC 60.039 55.000 0.00 0.00 0.00 3.18
2807 3126 0.038159 CTCCGTCCGAGAAAGCTTGT 60.038 55.000 0.00 0.00 41.63 3.16
2808 3127 0.737715 CCTCCGTCCGAGAAAGCTTG 60.738 60.000 0.00 0.00 41.63 4.01
2809 3128 1.592223 CCTCCGTCCGAGAAAGCTT 59.408 57.895 0.00 0.00 41.63 3.74
2810 3129 2.352032 CCCTCCGTCCGAGAAAGCT 61.352 63.158 0.00 0.00 41.63 3.74
2811 3130 2.184579 CCCTCCGTCCGAGAAAGC 59.815 66.667 0.00 0.00 41.63 3.51
2812 3131 0.966370 ACTCCCTCCGTCCGAGAAAG 60.966 60.000 0.00 0.00 41.63 2.62
2813 3132 0.329261 TACTCCCTCCGTCCGAGAAA 59.671 55.000 0.00 0.00 41.63 2.52
2814 3133 0.549950 ATACTCCCTCCGTCCGAGAA 59.450 55.000 0.00 0.00 41.63 2.87
2815 3134 1.427809 TATACTCCCTCCGTCCGAGA 58.572 55.000 0.00 0.00 41.63 4.04
2816 3135 2.493414 ATATACTCCCTCCGTCCGAG 57.507 55.000 0.00 0.00 38.46 4.63
2817 3136 2.965671 AATATACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
2818 3137 5.648572 GATAAAATATACTCCCTCCGTCCG 58.351 45.833 0.00 0.00 0.00 4.79
2819 3138 5.416952 TCGATAAAATATACTCCCTCCGTCC 59.583 44.000 0.00 0.00 0.00 4.79
2820 3139 6.506500 TCGATAAAATATACTCCCTCCGTC 57.493 41.667 0.00 0.00 0.00 4.79
2821 3140 6.906157 TTCGATAAAATATACTCCCTCCGT 57.094 37.500 0.00 0.00 0.00 4.69
2822 3141 6.255887 GCATTCGATAAAATATACTCCCTCCG 59.744 42.308 0.00 0.00 0.00 4.63
2823 3142 7.331791 AGCATTCGATAAAATATACTCCCTCC 58.668 38.462 0.00 0.00 0.00 4.30
2824 3143 8.779354 AAGCATTCGATAAAATATACTCCCTC 57.221 34.615 0.00 0.00 0.00 4.30
2825 3144 9.003658 CAAAGCATTCGATAAAATATACTCCCT 57.996 33.333 0.00 0.00 0.00 4.20
2826 3145 8.237267 CCAAAGCATTCGATAAAATATACTCCC 58.763 37.037 0.00 0.00 0.00 4.30
2827 3146 8.999431 TCCAAAGCATTCGATAAAATATACTCC 58.001 33.333 0.00 0.00 0.00 3.85
2891 3210 6.434028 CCTGAAAAGAGATAAACCATGAACCA 59.566 38.462 0.00 0.00 0.00 3.67
3009 3328 2.816601 AAGCTAGCAGGTGCAGCAGG 62.817 60.000 19.63 10.91 43.00 4.85
3424 3743 3.122297 TCAATTTTGCTTCCTTGTTGCG 58.878 40.909 0.00 0.00 0.00 4.85
3699 4018 1.757699 CTGAGGGTAACTAGGCCAGTC 59.242 57.143 5.01 0.00 36.04 3.51
3911 4230 2.096417 CACCACTTTCGAACTAAAGCCG 60.096 50.000 0.00 0.00 39.59 5.52
4089 4408 2.301296 TCAGCTCTCCACTCTTTTCCAG 59.699 50.000 0.00 0.00 0.00 3.86
4139 4458 1.053048 CGACGACAATATAGCGCCAG 58.947 55.000 2.29 0.00 0.00 4.85
4143 4462 4.553815 CCATAAGACGACGACAATATAGCG 59.446 45.833 0.00 0.00 0.00 4.26
4150 4469 3.374220 AACACCATAAGACGACGACAA 57.626 42.857 0.00 0.00 0.00 3.18
4151 4470 3.005050 AGAAACACCATAAGACGACGACA 59.995 43.478 0.00 0.00 0.00 4.35
4152 4471 3.364023 CAGAAACACCATAAGACGACGAC 59.636 47.826 0.00 0.00 0.00 4.34
4157 4476 3.325870 TGCTCAGAAACACCATAAGACG 58.674 45.455 0.00 0.00 0.00 4.18
4173 4492 6.625960 GCAATACGATATAGGACAGATGCTCA 60.626 42.308 0.00 0.00 0.00 4.26
4193 4512 6.964807 AACAATGCCATCAATAGAGCAATA 57.035 33.333 0.00 0.00 38.99 1.90
4242 4561 8.197988 AGCACTACGATATCCAAGTTTAAAAG 57.802 34.615 0.00 0.00 0.00 2.27
4281 4600 2.556144 TTCTTCTGCAGCTGTCACAT 57.444 45.000 16.64 0.00 0.00 3.21
4335 4654 6.813152 CAGCAAAAATGAAGGGGTAATACAAG 59.187 38.462 0.00 0.00 0.00 3.16
4346 4665 2.224354 ACCAAGGCAGCAAAAATGAAGG 60.224 45.455 0.00 0.00 0.00 3.46
4390 4709 7.325660 ACTGTGAAATGATGGCTAATACTTG 57.674 36.000 0.00 0.00 0.00 3.16
4466 4788 8.224389 TGGAGAACAACCATGACATTATATTG 57.776 34.615 0.00 0.00 32.03 1.90
4582 4928 3.268595 TGGAATTTAAAGGGAGGAGGGTC 59.731 47.826 0.00 0.00 0.00 4.46
4583 4929 3.274383 TGGAATTTAAAGGGAGGAGGGT 58.726 45.455 0.00 0.00 0.00 4.34
4585 4931 5.957774 TCAAATGGAATTTAAAGGGAGGAGG 59.042 40.000 0.00 0.00 46.64 4.30
4586 4932 7.666063 ATCAAATGGAATTTAAAGGGAGGAG 57.334 36.000 0.00 0.00 46.64 3.69
4587 4933 7.457535 ACAATCAAATGGAATTTAAAGGGAGGA 59.542 33.333 0.00 0.00 46.64 3.71
4588 4934 7.623630 ACAATCAAATGGAATTTAAAGGGAGG 58.376 34.615 0.00 0.00 46.64 4.30
4589 4935 8.534496 AGACAATCAAATGGAATTTAAAGGGAG 58.466 33.333 0.00 0.00 46.64 4.30
4590 4936 8.434589 AGACAATCAAATGGAATTTAAAGGGA 57.565 30.769 0.00 0.00 46.64 4.20
4591 4937 9.154847 GAAGACAATCAAATGGAATTTAAAGGG 57.845 33.333 0.00 0.00 46.64 3.95
4592 4938 9.933723 AGAAGACAATCAAATGGAATTTAAAGG 57.066 29.630 0.00 0.00 46.64 3.11
4599 4945 9.865321 CATGTTAAGAAGACAATCAAATGGAAT 57.135 29.630 0.00 0.00 0.00 3.01
4600 4946 8.859090 ACATGTTAAGAAGACAATCAAATGGAA 58.141 29.630 0.00 0.00 0.00 3.53
4601 4947 8.408043 ACATGTTAAGAAGACAATCAAATGGA 57.592 30.769 0.00 0.00 0.00 3.41
4638 4984 3.970828 GCATGTTGGCGAAAATGTAAC 57.029 42.857 12.58 0.00 0.00 2.50
4654 5002 2.797087 GCAGGAAAATCCATGTCGCATG 60.797 50.000 11.41 11.41 39.61 4.06
4676 5024 4.971220 TGTTTTCGGATTTTTACTGTTCGC 59.029 37.500 0.00 0.00 0.00 4.70
4677 5025 7.617533 ATTGTTTTCGGATTTTTACTGTTCG 57.382 32.000 0.00 0.00 0.00 3.95
4763 5180 4.449743 GGCGTACACAGATGTCTTTTGTAA 59.550 41.667 0.00 0.00 40.48 2.41
4781 5198 1.959042 TTTTGTGGTTTACCGGCGTA 58.041 45.000 6.01 0.00 39.43 4.42
4783 5200 1.202268 TGTTTTTGTGGTTTACCGGCG 60.202 47.619 0.00 0.00 39.43 6.46
4787 5204 7.334671 TCCTGAATTTTGTTTTTGTGGTTTACC 59.665 33.333 0.00 0.00 0.00 2.85
4791 5208 6.472016 AGTCCTGAATTTTGTTTTTGTGGTT 58.528 32.000 0.00 0.00 0.00 3.67
4792 5209 6.048732 AGTCCTGAATTTTGTTTTTGTGGT 57.951 33.333 0.00 0.00 0.00 4.16
4793 5210 6.105333 TGAGTCCTGAATTTTGTTTTTGTGG 58.895 36.000 0.00 0.00 0.00 4.17
4797 5214 9.500785 TCTTTTTGAGTCCTGAATTTTGTTTTT 57.499 25.926 0.00 0.00 0.00 1.94
4802 5219 5.173854 GCGTCTTTTTGAGTCCTGAATTTTG 59.826 40.000 0.00 0.00 0.00 2.44
4807 5224 2.912771 TGCGTCTTTTTGAGTCCTGAA 58.087 42.857 0.00 0.00 0.00 3.02
4823 5240 0.250467 AGTGAGTGCTCCAAATGCGT 60.250 50.000 0.00 0.00 0.00 5.24
4824 5241 0.877071 AAGTGAGTGCTCCAAATGCG 59.123 50.000 0.00 0.00 0.00 4.73
4825 5242 2.095364 CAGAAGTGAGTGCTCCAAATGC 60.095 50.000 0.00 0.00 0.00 3.56
4826 5243 3.144506 ACAGAAGTGAGTGCTCCAAATG 58.855 45.455 0.00 0.00 0.00 2.32
4827 5244 3.498774 ACAGAAGTGAGTGCTCCAAAT 57.501 42.857 0.00 0.00 0.00 2.32
4828 5245 3.281727 AACAGAAGTGAGTGCTCCAAA 57.718 42.857 0.00 0.00 0.00 3.28
4829 5246 3.281727 AAACAGAAGTGAGTGCTCCAA 57.718 42.857 0.00 0.00 0.00 3.53
4830 5247 3.281727 AAAACAGAAGTGAGTGCTCCA 57.718 42.857 0.00 0.00 0.00 3.86
4853 5270 1.043816 ATCCATAGTGGTCTGAGCCG 58.956 55.000 4.17 0.00 39.03 5.52
4854 5271 2.300437 GGTATCCATAGTGGTCTGAGCC 59.700 54.545 4.17 0.00 39.03 4.70
4855 5272 3.235200 AGGTATCCATAGTGGTCTGAGC 58.765 50.000 0.00 0.00 39.03 4.26
4856 5273 5.878406 AAAGGTATCCATAGTGGTCTGAG 57.122 43.478 0.00 0.00 39.03 3.35
4857 5274 6.012858 ACAAAAAGGTATCCATAGTGGTCTGA 60.013 38.462 0.00 0.00 39.03 3.27
4911 5331 5.568685 TTTTTCCTGACGAACATCAACAA 57.431 34.783 0.00 0.00 0.00 2.83
4955 5379 4.201940 CCGCATGAACAGCAATTTCTGATA 60.202 41.667 12.25 0.00 37.51 2.15
4966 5390 3.364441 TGCACCCGCATGAACAGC 61.364 61.111 0.00 0.00 45.36 4.40
4978 5402 6.151287 CACAGGTTTGTAGCATAGTGCACC 62.151 50.000 14.63 0.00 40.00 5.01
5008 5432 2.614987 GCCATAAACAAATTGCTGCCCA 60.615 45.455 0.00 0.00 0.00 5.36
5094 5518 4.762251 GCAACTCTCAGGACCAACTTATTT 59.238 41.667 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.