Multiple sequence alignment - TraesCS1A01G168800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G168800 chr1A 100.000 4490 0 0 1 4490 301772059 301776548 0.000000e+00 8292.0
1 TraesCS1A01G168800 chr1D 94.325 1727 67 18 2195 3914 238067043 238068745 0.000000e+00 2617.0
2 TraesCS1A01G168800 chr1D 92.985 1568 68 18 487 2034 238065500 238067045 0.000000e+00 2248.0
3 TraesCS1A01G168800 chr1D 91.696 578 22 6 3915 4490 238068812 238069365 0.000000e+00 778.0
4 TraesCS1A01G168800 chr1D 86.504 452 44 5 1 451 238065072 238065507 8.740000e-132 481.0
5 TraesCS1A01G168800 chr1D 91.720 157 9 4 2036 2192 469537769 469537617 9.780000e-52 215.0
6 TraesCS1A01G168800 chr1D 86.047 129 17 1 1 129 342448727 342448600 2.180000e-28 137.0
7 TraesCS1A01G168800 chr1B 95.916 1469 60 0 2195 3663 336274932 336273464 0.000000e+00 2381.0
8 TraesCS1A01G168800 chr1B 91.873 726 35 16 835 1541 336276375 336275655 0.000000e+00 992.0
9 TraesCS1A01G168800 chr1B 89.006 473 39 7 1563 2034 336275390 336274930 1.400000e-159 573.0
10 TraesCS1A01G168800 chr1B 84.132 605 45 18 3912 4490 336210817 336210238 5.110000e-149 538.0
11 TraesCS1A01G168800 chr2B 91.975 162 13 0 2034 2195 794585872 794586033 1.260000e-55 228.0
12 TraesCS1A01G168800 chr2B 81.746 126 13 9 3693 3816 680506185 680506068 3.700000e-16 97.1
13 TraesCS1A01G168800 chr5B 89.024 164 18 0 2034 2197 554818433 554818270 2.120000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G168800 chr1A 301772059 301776548 4489 False 8292.000000 8292 100.0000 1 4490 1 chr1A.!!$F1 4489
1 TraesCS1A01G168800 chr1D 238065072 238069365 4293 False 1531.000000 2617 91.3775 1 4490 4 chr1D.!!$F1 4489
2 TraesCS1A01G168800 chr1B 336273464 336276375 2911 True 1315.333333 2381 92.2650 835 3663 3 chr1B.!!$R2 2828
3 TraesCS1A01G168800 chr1B 336210238 336210817 579 True 538.000000 538 84.1320 3912 4490 1 chr1B.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.107703 TGGGATGACATGGCGAGTTC 60.108 55.0 0.00 0.0 0.00 3.01 F
222 224 0.386476 ACACGCACGTTTCCTAGTCA 59.614 50.0 0.00 0.0 0.00 3.41 F
2055 2336 0.452987 CCATGCTTGGAATCGGTGTG 59.547 55.0 13.33 0.0 46.92 3.82 F
2168 2449 0.032815 TTTTACAGGGGCAAAAGCGC 59.967 50.0 0.00 0.0 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 1482 1.745653 TGTCCTACTCGCATCTGTCAG 59.254 52.381 0.00 0.0 0.00 3.51 R
2149 2430 0.032815 GCGCTTTTGCCCCTGTAAAA 59.967 50.000 0.00 0.0 43.93 1.52 R
3355 3636 0.038526 GCAGCTTGCAGCAGTTGAAT 60.039 50.000 6.45 0.0 45.56 2.57 R
3826 4114 0.108804 AAGACATCTGTGTACGCCGG 60.109 55.000 3.51 0.0 39.09 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.396435 AACAAGTCGCTGGGATGACA 59.604 50.000 0.00 0.00 37.58 3.58
24 25 3.274586 CGCTGGGATGACATGGCG 61.275 66.667 0.00 0.09 36.89 5.69
29 30 0.107703 TGGGATGACATGGCGAGTTC 60.108 55.000 0.00 0.00 0.00 3.01
55 56 2.253758 CCAAGATATGTGCGGGCGG 61.254 63.158 0.00 0.00 0.00 6.13
57 58 1.227556 AAGATATGTGCGGGCGGTC 60.228 57.895 0.00 0.00 0.00 4.79
66 67 4.973055 CGGGCGGTCCAACGACAA 62.973 66.667 0.00 0.00 45.67 3.18
77 78 1.064952 CCAACGACAACAAGGGTGTTC 59.935 52.381 0.00 0.00 45.00 3.18
78 79 1.740585 CAACGACAACAAGGGTGTTCA 59.259 47.619 0.00 0.00 45.00 3.18
91 92 1.079503 GTGTTCAGGACGAGATTGCC 58.920 55.000 0.00 0.00 0.00 4.52
93 94 1.079503 GTTCAGGACGAGATTGCCAC 58.920 55.000 0.00 0.00 0.00 5.01
102 103 4.248859 GACGAGATTGCCACATATAGCAT 58.751 43.478 0.00 0.00 39.11 3.79
103 104 4.645535 ACGAGATTGCCACATATAGCATT 58.354 39.130 0.00 0.00 39.11 3.56
104 105 5.793817 ACGAGATTGCCACATATAGCATTA 58.206 37.500 0.00 0.00 39.11 1.90
124 125 7.038302 AGCATTATTCGGGAGTTATAGATTCCA 60.038 37.037 0.00 0.00 35.91 3.53
125 126 7.606456 GCATTATTCGGGAGTTATAGATTCCAA 59.394 37.037 0.00 0.00 35.91 3.53
189 191 4.384599 GTGAGCTCACACATGCCA 57.615 55.556 36.23 1.57 45.75 4.92
202 204 3.947196 ACACATGCCACACATATAACCAG 59.053 43.478 0.00 0.00 36.64 4.00
203 205 4.198530 CACATGCCACACATATAACCAGA 58.801 43.478 0.00 0.00 36.64 3.86
206 208 3.605634 TGCCACACATATAACCAGACAC 58.394 45.455 0.00 0.00 0.00 3.67
213 215 2.728690 TATAACCAGACACGCACGTT 57.271 45.000 0.00 0.00 0.00 3.99
221 223 1.058404 GACACGCACGTTTCCTAGTC 58.942 55.000 0.00 0.00 0.00 2.59
222 224 0.386476 ACACGCACGTTTCCTAGTCA 59.614 50.000 0.00 0.00 0.00 3.41
223 225 0.782384 CACGCACGTTTCCTAGTCAC 59.218 55.000 0.00 0.00 0.00 3.67
224 226 0.386476 ACGCACGTTTCCTAGTCACA 59.614 50.000 0.00 0.00 0.00 3.58
225 227 0.782384 CGCACGTTTCCTAGTCACAC 59.218 55.000 0.00 0.00 0.00 3.82
226 228 1.860676 GCACGTTTCCTAGTCACACA 58.139 50.000 0.00 0.00 0.00 3.72
227 229 1.525619 GCACGTTTCCTAGTCACACAC 59.474 52.381 0.00 0.00 0.00 3.82
228 230 2.816689 CACGTTTCCTAGTCACACACA 58.183 47.619 0.00 0.00 0.00 3.72
229 231 2.538449 CACGTTTCCTAGTCACACACAC 59.462 50.000 0.00 0.00 0.00 3.82
230 232 2.166870 ACGTTTCCTAGTCACACACACA 59.833 45.455 0.00 0.00 0.00 3.72
231 233 2.538449 CGTTTCCTAGTCACACACACAC 59.462 50.000 0.00 0.00 0.00 3.82
232 234 3.527533 GTTTCCTAGTCACACACACACA 58.472 45.455 0.00 0.00 0.00 3.72
243 245 2.289133 ACACACACACACACACACACTA 60.289 45.455 0.00 0.00 0.00 2.74
253 255 6.934083 ACACACACACACACTATAATGATGAA 59.066 34.615 0.00 0.00 0.00 2.57
302 304 9.953697 TCAATAAATTTTTACTACACACACCAC 57.046 29.630 0.00 0.00 0.00 4.16
304 306 6.777213 AAATTTTTACTACACACACCACCA 57.223 33.333 0.00 0.00 0.00 4.17
311 313 7.907841 TTACTACACACACCACCATATAGAT 57.092 36.000 0.00 0.00 0.00 1.98
315 317 9.596308 ACTACACACACCACCATATAGATATTA 57.404 33.333 0.00 0.00 0.00 0.98
410 412 8.766476 AGATAATGCACTATAGTATCATGGCTT 58.234 33.333 16.14 6.81 29.96 4.35
416 418 6.483307 GCACTATAGTATCATGGCTTGTTTGA 59.517 38.462 4.74 0.00 0.00 2.69
417 419 7.012327 GCACTATAGTATCATGGCTTGTTTGAA 59.988 37.037 4.74 0.00 0.00 2.69
418 420 8.892723 CACTATAGTATCATGGCTTGTTTGAAA 58.107 33.333 4.74 0.00 0.00 2.69
451 453 8.972262 ATCATATGTGCTATAGACGTGTTAAG 57.028 34.615 3.21 0.00 0.00 1.85
452 454 6.861572 TCATATGTGCTATAGACGTGTTAAGC 59.138 38.462 3.21 10.80 0.00 3.09
453 455 4.713824 TGTGCTATAGACGTGTTAAGCT 57.286 40.909 16.42 0.00 0.00 3.74
454 456 5.823209 TGTGCTATAGACGTGTTAAGCTA 57.177 39.130 16.42 1.96 0.00 3.32
455 457 5.817988 TGTGCTATAGACGTGTTAAGCTAG 58.182 41.667 16.42 0.00 0.00 3.42
456 458 5.356190 TGTGCTATAGACGTGTTAAGCTAGT 59.644 40.000 16.42 0.00 0.00 2.57
457 459 6.539826 TGTGCTATAGACGTGTTAAGCTAGTA 59.460 38.462 16.42 0.00 0.00 1.82
458 460 7.066163 TGTGCTATAGACGTGTTAAGCTAGTAA 59.934 37.037 16.42 0.00 0.00 2.24
459 461 7.912250 GTGCTATAGACGTGTTAAGCTAGTAAA 59.088 37.037 16.42 0.00 0.00 2.01
460 462 7.912250 TGCTATAGACGTGTTAAGCTAGTAAAC 59.088 37.037 16.42 0.00 0.00 2.01
461 463 8.127954 GCTATAGACGTGTTAAGCTAGTAAACT 58.872 37.037 3.21 0.00 0.00 2.66
464 466 7.678947 AGACGTGTTAAGCTAGTAAACTAGA 57.321 36.000 19.06 0.00 46.80 2.43
465 467 7.525759 AGACGTGTTAAGCTAGTAAACTAGAC 58.474 38.462 19.06 11.03 46.80 2.59
466 468 7.390162 AGACGTGTTAAGCTAGTAAACTAGACT 59.610 37.037 19.06 12.77 46.80 3.24
467 469 8.553459 ACGTGTTAAGCTAGTAAACTAGACTA 57.447 34.615 19.06 7.64 46.80 2.59
468 470 8.447053 ACGTGTTAAGCTAGTAAACTAGACTAC 58.553 37.037 19.06 11.83 46.80 2.73
469 471 8.446273 CGTGTTAAGCTAGTAAACTAGACTACA 58.554 37.037 19.06 13.63 46.80 2.74
488 490 9.569122 AGACTACAAAACATACAAAGTAATGGT 57.431 29.630 0.00 0.00 0.00 3.55
526 528 5.011431 TCACAATCCATGTAATGCCAAACAA 59.989 36.000 0.00 0.00 44.97 2.83
590 599 5.170021 TCTGATAAATGCACATGTTTTGCC 58.830 37.500 0.00 0.00 39.39 4.52
594 603 4.555348 AAATGCACATGTTTTGCCTTTG 57.445 36.364 0.00 0.00 36.72 2.77
605 614 7.984617 ACATGTTTTGCCTTTGTTTACATAGTT 59.015 29.630 0.00 0.00 0.00 2.24
665 674 7.447374 AGTAATCATCACATCAAACCGAAAA 57.553 32.000 0.00 0.00 0.00 2.29
668 677 4.141287 TCATCACATCAAACCGAAAACCT 58.859 39.130 0.00 0.00 0.00 3.50
669 678 4.215399 TCATCACATCAAACCGAAAACCTC 59.785 41.667 0.00 0.00 0.00 3.85
670 679 3.546724 TCACATCAAACCGAAAACCTCA 58.453 40.909 0.00 0.00 0.00 3.86
671 680 3.948473 TCACATCAAACCGAAAACCTCAA 59.052 39.130 0.00 0.00 0.00 3.02
687 696 4.870636 ACCTCAATATTGGGCAAAGATCA 58.129 39.130 15.36 0.00 0.00 2.92
696 705 6.966435 ATTGGGCAAAGATCAAATTTTACG 57.034 33.333 0.00 0.00 0.00 3.18
716 725 4.632153 ACGGTGCTTCTTATCATGATACC 58.368 43.478 15.10 12.40 0.00 2.73
897 909 8.335356 TCAAGTTGACATCTAAAAGAAGAAACG 58.665 33.333 0.08 0.00 0.00 3.60
1235 1261 3.838271 GGTGCCGGAGATCGAGCA 61.838 66.667 5.05 0.00 42.43 4.26
1338 1364 1.229359 CCAGGCCCTCGAGGTACTA 59.771 63.158 29.25 0.00 41.55 1.82
1358 1385 2.510906 CTCCCCGTGCCCCATTAG 59.489 66.667 0.00 0.00 0.00 1.73
1408 1435 2.911484 CAGTAGCTTCCCATGGTTCTC 58.089 52.381 11.73 0.00 0.00 2.87
1493 1520 3.274288 GACATTTCTGAGATGGTGACCC 58.726 50.000 12.20 0.00 0.00 4.46
1724 2004 4.872691 CCTTTCGACTCATTGCTTAGATGT 59.127 41.667 0.00 0.00 0.00 3.06
1725 2005 5.352569 CCTTTCGACTCATTGCTTAGATGTT 59.647 40.000 0.00 0.00 0.00 2.71
1726 2006 6.535150 CCTTTCGACTCATTGCTTAGATGTTA 59.465 38.462 0.00 0.00 0.00 2.41
1727 2007 7.225538 CCTTTCGACTCATTGCTTAGATGTTAT 59.774 37.037 0.00 0.00 0.00 1.89
1728 2008 7.468922 TTCGACTCATTGCTTAGATGTTATG 57.531 36.000 0.00 0.00 0.00 1.90
1729 2009 6.805713 TCGACTCATTGCTTAGATGTTATGA 58.194 36.000 0.00 0.00 0.00 2.15
1730 2010 6.920210 TCGACTCATTGCTTAGATGTTATGAG 59.080 38.462 0.00 0.00 42.76 2.90
1783 2063 1.608025 CGGAACAGTAGCACATGGTGT 60.608 52.381 0.00 0.00 35.75 4.16
1825 2105 7.483375 TCGTGTTCAATTTATTTTTATCTGCCG 59.517 33.333 0.00 0.00 0.00 5.69
1848 2128 6.089551 CCGTATGTCACAGACTTGAAGTTTAG 59.910 42.308 0.00 0.00 33.15 1.85
1872 2153 4.018506 TGGAATGAGGAGTTTAATCTGGCA 60.019 41.667 0.00 0.00 0.00 4.92
1924 2205 5.239351 TGTAGTTAAAATACTTCTGCGCCA 58.761 37.500 4.18 0.00 0.00 5.69
2017 2298 7.672239 TGTAAGCCATTAAACCCTTGAAGTATT 59.328 33.333 0.00 0.00 0.00 1.89
2046 2327 7.854166 AAATAATAATAAGGCCATGCTTGGA 57.146 32.000 22.21 1.42 46.92 3.53
2047 2328 7.854166 AATAATAATAAGGCCATGCTTGGAA 57.146 32.000 22.21 4.56 46.92 3.53
2048 2329 8.439964 AATAATAATAAGGCCATGCTTGGAAT 57.560 30.769 22.21 9.23 46.92 3.01
2049 2330 5.990120 ATAATAAGGCCATGCTTGGAATC 57.010 39.130 22.21 10.23 46.92 2.52
2050 2331 1.679139 TAAGGCCATGCTTGGAATCG 58.321 50.000 22.21 0.00 46.92 3.34
2051 2332 1.039233 AAGGCCATGCTTGGAATCGG 61.039 55.000 22.21 0.00 46.92 4.18
2052 2333 1.754234 GGCCATGCTTGGAATCGGT 60.754 57.895 22.21 0.00 46.92 4.69
2053 2334 1.434696 GCCATGCTTGGAATCGGTG 59.565 57.895 22.21 0.00 46.92 4.94
2054 2335 1.315257 GCCATGCTTGGAATCGGTGT 61.315 55.000 22.21 0.00 46.92 4.16
2055 2336 0.452987 CCATGCTTGGAATCGGTGTG 59.547 55.000 13.33 0.00 46.92 3.82
2056 2337 1.167851 CATGCTTGGAATCGGTGTGT 58.832 50.000 0.00 0.00 0.00 3.72
2057 2338 1.541147 CATGCTTGGAATCGGTGTGTT 59.459 47.619 0.00 0.00 0.00 3.32
2058 2339 1.686355 TGCTTGGAATCGGTGTGTTT 58.314 45.000 0.00 0.00 0.00 2.83
2059 2340 2.028130 TGCTTGGAATCGGTGTGTTTT 58.972 42.857 0.00 0.00 0.00 2.43
2060 2341 2.428890 TGCTTGGAATCGGTGTGTTTTT 59.571 40.909 0.00 0.00 0.00 1.94
2061 2342 3.632604 TGCTTGGAATCGGTGTGTTTTTA 59.367 39.130 0.00 0.00 0.00 1.52
2062 2343 4.279671 TGCTTGGAATCGGTGTGTTTTTAT 59.720 37.500 0.00 0.00 0.00 1.40
2063 2344 5.473846 TGCTTGGAATCGGTGTGTTTTTATA 59.526 36.000 0.00 0.00 0.00 0.98
2064 2345 5.798434 GCTTGGAATCGGTGTGTTTTTATAC 59.202 40.000 0.00 0.00 0.00 1.47
2065 2346 6.568844 GCTTGGAATCGGTGTGTTTTTATACA 60.569 38.462 0.00 0.00 0.00 2.29
2066 2347 6.243811 TGGAATCGGTGTGTTTTTATACAC 57.756 37.500 0.00 0.00 46.71 2.90
2077 2358 9.738832 GTGTGTTTTTATACACCTGTATTTGTT 57.261 29.630 3.31 0.00 46.13 2.83
2085 2366 7.833285 ATACACCTGTATTTGTTTTCCAAGT 57.167 32.000 0.00 0.00 37.97 3.16
2086 2367 5.901552 ACACCTGTATTTGTTTTCCAAGTG 58.098 37.500 0.00 0.00 33.75 3.16
2087 2368 5.420739 ACACCTGTATTTGTTTTCCAAGTGT 59.579 36.000 0.00 0.00 32.97 3.55
2088 2369 6.603997 ACACCTGTATTTGTTTTCCAAGTGTA 59.396 34.615 0.00 0.00 34.86 2.90
2089 2370 7.286775 ACACCTGTATTTGTTTTCCAAGTGTAT 59.713 33.333 0.00 0.00 34.86 2.29
2090 2371 7.807907 CACCTGTATTTGTTTTCCAAGTGTATC 59.192 37.037 0.00 0.00 33.75 2.24
2091 2372 7.724061 ACCTGTATTTGTTTTCCAAGTGTATCT 59.276 33.333 0.00 0.00 33.75 1.98
2092 2373 8.576442 CCTGTATTTGTTTTCCAAGTGTATCTT 58.424 33.333 0.00 0.00 33.75 2.40
2095 2376 9.836076 GTATTTGTTTTCCAAGTGTATCTTACC 57.164 33.333 0.00 0.00 34.66 2.85
2096 2377 8.706322 ATTTGTTTTCCAAGTGTATCTTACCT 57.294 30.769 0.00 0.00 34.66 3.08
2097 2378 7.504924 TTGTTTTCCAAGTGTATCTTACCTG 57.495 36.000 0.00 0.00 34.66 4.00
2098 2379 5.472137 TGTTTTCCAAGTGTATCTTACCTGC 59.528 40.000 0.00 0.00 34.66 4.85
2099 2380 3.906720 TCCAAGTGTATCTTACCTGCC 57.093 47.619 0.00 0.00 34.66 4.85
2100 2381 3.178046 TCCAAGTGTATCTTACCTGCCA 58.822 45.455 0.00 0.00 34.66 4.92
2101 2382 3.780294 TCCAAGTGTATCTTACCTGCCAT 59.220 43.478 0.00 0.00 34.66 4.40
2102 2383 3.879295 CCAAGTGTATCTTACCTGCCATG 59.121 47.826 0.00 0.00 34.66 3.66
2103 2384 4.517285 CAAGTGTATCTTACCTGCCATGT 58.483 43.478 0.00 0.00 34.66 3.21
2104 2385 4.142609 AGTGTATCTTACCTGCCATGTG 57.857 45.455 0.00 0.00 0.00 3.21
2105 2386 2.614057 GTGTATCTTACCTGCCATGTGC 59.386 50.000 0.00 0.00 41.77 4.57
2106 2387 7.555387 AAGTGTATCTTACCTGCCATGTGCA 62.555 44.000 8.33 8.33 40.40 4.57
2107 2388 8.932155 AAGTGTATCTTACCTGCCATGTGCAA 62.932 42.308 9.65 0.00 41.41 4.08
2116 2397 2.460757 GCCATGTGCAAATTTCACCT 57.539 45.000 14.25 5.86 40.77 4.00
2117 2398 2.070783 GCCATGTGCAAATTTCACCTG 58.929 47.619 14.25 13.97 40.77 4.00
2118 2399 2.288948 GCCATGTGCAAATTTCACCTGA 60.289 45.455 18.38 5.39 40.77 3.86
2119 2400 3.581755 CCATGTGCAAATTTCACCTGAG 58.418 45.455 18.38 10.52 33.71 3.35
2120 2401 3.256383 CCATGTGCAAATTTCACCTGAGA 59.744 43.478 18.38 4.91 33.71 3.27
2121 2402 4.262121 CCATGTGCAAATTTCACCTGAGAA 60.262 41.667 18.38 4.43 33.71 2.87
2122 2403 5.475719 CATGTGCAAATTTCACCTGAGAAT 58.524 37.500 14.71 3.53 33.71 2.40
2123 2404 5.125100 TGTGCAAATTTCACCTGAGAATC 57.875 39.130 14.25 0.00 33.71 2.52
2124 2405 4.583907 TGTGCAAATTTCACCTGAGAATCA 59.416 37.500 14.25 0.00 36.80 2.57
2125 2406 5.068855 TGTGCAAATTTCACCTGAGAATCAA 59.931 36.000 14.25 0.00 37.21 2.57
2126 2407 6.406737 TGTGCAAATTTCACCTGAGAATCAAA 60.407 34.615 14.25 0.00 37.21 2.69
2127 2408 7.847235 TGTGCAAATTTCACCTGAGAATCAAAA 60.847 33.333 14.25 0.00 37.21 2.44
2137 2418 3.554670 GAGAATCAAAACGACGGATCG 57.445 47.619 0.00 0.00 45.03 3.69
2145 2426 2.875485 CGACGGATCGTGGTCTGT 59.125 61.111 0.00 0.00 43.66 3.41
2146 2427 2.092374 CGACGGATCGTGGTCTGTA 58.908 57.895 0.00 0.00 43.66 2.74
2147 2428 0.661552 CGACGGATCGTGGTCTGTAT 59.338 55.000 0.00 0.00 43.66 2.29
2148 2429 1.869132 CGACGGATCGTGGTCTGTATA 59.131 52.381 0.00 0.00 43.66 1.47
2149 2430 2.483106 CGACGGATCGTGGTCTGTATAT 59.517 50.000 0.00 0.00 43.66 0.86
2150 2431 3.058432 CGACGGATCGTGGTCTGTATATT 60.058 47.826 0.00 0.00 43.66 1.28
2151 2432 4.556104 CGACGGATCGTGGTCTGTATATTT 60.556 45.833 0.00 0.00 43.66 1.40
2152 2433 5.272283 ACGGATCGTGGTCTGTATATTTT 57.728 39.130 0.00 0.00 39.18 1.82
2153 2434 6.395426 ACGGATCGTGGTCTGTATATTTTA 57.605 37.500 0.00 0.00 39.18 1.52
2154 2435 6.211515 ACGGATCGTGGTCTGTATATTTTAC 58.788 40.000 0.00 0.00 39.18 2.01
2155 2436 6.183360 ACGGATCGTGGTCTGTATATTTTACA 60.183 38.462 0.00 0.00 39.18 2.41
2156 2437 6.362551 CGGATCGTGGTCTGTATATTTTACAG 59.637 42.308 7.69 7.69 44.56 2.74
2157 2438 6.645415 GGATCGTGGTCTGTATATTTTACAGG 59.355 42.308 12.49 0.00 43.67 4.00
2158 2439 5.909477 TCGTGGTCTGTATATTTTACAGGG 58.091 41.667 12.49 1.54 43.67 4.45
2159 2440 5.054477 CGTGGTCTGTATATTTTACAGGGG 58.946 45.833 12.49 0.00 43.67 4.79
2160 2441 4.820173 GTGGTCTGTATATTTTACAGGGGC 59.180 45.833 12.49 5.63 43.67 5.80
2161 2442 4.475381 TGGTCTGTATATTTTACAGGGGCA 59.525 41.667 12.49 0.00 43.67 5.36
2162 2443 5.044772 TGGTCTGTATATTTTACAGGGGCAA 60.045 40.000 12.49 0.00 43.67 4.52
2163 2444 5.889289 GGTCTGTATATTTTACAGGGGCAAA 59.111 40.000 12.49 0.00 43.67 3.68
2164 2445 6.378848 GGTCTGTATATTTTACAGGGGCAAAA 59.621 38.462 12.49 0.00 43.67 2.44
2165 2446 7.416326 GGTCTGTATATTTTACAGGGGCAAAAG 60.416 40.741 12.49 0.00 43.67 2.27
2166 2447 6.096282 TCTGTATATTTTACAGGGGCAAAAGC 59.904 38.462 12.49 0.00 43.67 3.51
2167 2448 2.741759 ATTTTACAGGGGCAAAAGCG 57.258 45.000 0.00 0.00 0.00 4.68
2168 2449 0.032815 TTTTACAGGGGCAAAAGCGC 59.967 50.000 0.00 0.00 0.00 5.92
2169 2450 0.825840 TTTACAGGGGCAAAAGCGCT 60.826 50.000 2.64 2.64 0.00 5.92
2170 2451 0.037017 TTACAGGGGCAAAAGCGCTA 59.963 50.000 12.05 0.00 0.00 4.26
2171 2452 0.392461 TACAGGGGCAAAAGCGCTAG 60.392 55.000 12.05 5.01 0.00 3.42
2172 2453 1.377202 CAGGGGCAAAAGCGCTAGA 60.377 57.895 12.05 0.00 0.00 2.43
2173 2454 0.960364 CAGGGGCAAAAGCGCTAGAA 60.960 55.000 12.05 0.00 0.00 2.10
2174 2455 0.251165 AGGGGCAAAAGCGCTAGAAA 60.251 50.000 12.05 0.00 0.00 2.52
2175 2456 0.109272 GGGGCAAAAGCGCTAGAAAC 60.109 55.000 12.05 0.87 0.00 2.78
2176 2457 0.454452 GGGCAAAAGCGCTAGAAACG 60.454 55.000 12.05 0.00 0.00 3.60
2177 2458 0.515564 GGCAAAAGCGCTAGAAACGA 59.484 50.000 12.05 0.00 0.00 3.85
2178 2459 1.592336 GCAAAAGCGCTAGAAACGAC 58.408 50.000 12.05 0.00 0.00 4.34
2179 2460 1.070175 GCAAAAGCGCTAGAAACGACA 60.070 47.619 12.05 0.00 0.00 4.35
2180 2461 2.601266 GCAAAAGCGCTAGAAACGACAA 60.601 45.455 12.05 0.00 0.00 3.18
2181 2462 3.810373 CAAAAGCGCTAGAAACGACAAT 58.190 40.909 12.05 0.00 0.00 2.71
2182 2463 3.724295 AAAGCGCTAGAAACGACAATC 57.276 42.857 12.05 0.00 0.00 2.67
2183 2464 1.641577 AGCGCTAGAAACGACAATCC 58.358 50.000 8.99 0.00 0.00 3.01
2184 2465 1.067142 AGCGCTAGAAACGACAATCCA 60.067 47.619 8.99 0.00 0.00 3.41
2185 2466 1.730064 GCGCTAGAAACGACAATCCAA 59.270 47.619 0.00 0.00 0.00 3.53
2186 2467 2.351726 GCGCTAGAAACGACAATCCAAT 59.648 45.455 0.00 0.00 0.00 3.16
2187 2468 3.544244 GCGCTAGAAACGACAATCCAATC 60.544 47.826 0.00 0.00 0.00 2.67
2188 2469 3.616821 CGCTAGAAACGACAATCCAATCA 59.383 43.478 0.00 0.00 0.00 2.57
2189 2470 4.092821 CGCTAGAAACGACAATCCAATCAA 59.907 41.667 0.00 0.00 0.00 2.57
2190 2471 5.563842 GCTAGAAACGACAATCCAATCAAG 58.436 41.667 0.00 0.00 0.00 3.02
2191 2472 5.447818 GCTAGAAACGACAATCCAATCAAGG 60.448 44.000 0.00 0.00 0.00 3.61
2192 2473 3.191371 AGAAACGACAATCCAATCAAGGC 59.809 43.478 0.00 0.00 0.00 4.35
2193 2474 1.463674 ACGACAATCCAATCAAGGCC 58.536 50.000 0.00 0.00 0.00 5.19
2194 2475 1.004745 ACGACAATCCAATCAAGGCCT 59.995 47.619 0.00 0.00 0.00 5.19
2195 2476 2.238646 ACGACAATCCAATCAAGGCCTA 59.761 45.455 5.16 0.00 0.00 3.93
2196 2477 3.278574 CGACAATCCAATCAAGGCCTAA 58.721 45.455 5.16 0.00 0.00 2.69
2236 2517 6.205853 CGCTAGTAATTATGGGGTATTTTGCA 59.794 38.462 0.00 0.00 0.00 4.08
2372 2653 3.000041 TGGATTTGATCGGTCAAGTTCG 59.000 45.455 11.58 0.00 44.62 3.95
2670 2951 9.401058 AGCTACAGAATTTGCATAAACTCTTAT 57.599 29.630 0.00 0.00 30.54 1.73
2739 3020 3.072330 TGGAGTGTGAGCCTCAAATTGTA 59.928 43.478 0.00 0.00 0.00 2.41
2765 3046 1.961793 TGGAATACCTATGCCGTTGC 58.038 50.000 0.00 0.00 33.77 4.17
2925 3206 2.431683 GTGAAGAGGCTGTGGGCA 59.568 61.111 0.00 0.00 44.01 5.36
2994 3275 1.320507 TGCTTGCAATGCTTGTGAGA 58.679 45.000 17.72 0.00 37.94 3.27
3003 3284 4.320714 GCAATGCTTGTGAGACTTGATGAA 60.321 41.667 0.00 0.00 0.00 2.57
3004 3285 5.765176 CAATGCTTGTGAGACTTGATGAAA 58.235 37.500 0.00 0.00 0.00 2.69
3006 3287 6.585695 ATGCTTGTGAGACTTGATGAAATT 57.414 33.333 0.00 0.00 0.00 1.82
3020 3301 4.157289 TGATGAAATTGAAGAAGCTGAGGC 59.843 41.667 0.00 0.00 39.06 4.70
3052 3333 0.599204 GTGGGAGTCGAGCGAAAACA 60.599 55.000 0.00 0.00 0.00 2.83
3054 3335 0.599204 GGGAGTCGAGCGAAAACACA 60.599 55.000 0.00 0.00 0.00 3.72
3069 3350 5.514274 AAAACACATTCGACTTCCATGTT 57.486 34.783 0.00 0.00 0.00 2.71
3072 3353 2.094258 CACATTCGACTTCCATGTTCCG 59.906 50.000 0.00 0.00 0.00 4.30
3082 3363 3.694043 TCCATGTTCCGAATGTCTTGA 57.306 42.857 0.00 0.00 0.00 3.02
3090 3371 2.831526 TCCGAATGTCTTGATCACTGGA 59.168 45.455 0.00 0.00 0.00 3.86
3096 3377 3.361786 TGTCTTGATCACTGGATACCGA 58.638 45.455 0.00 0.00 32.67 4.69
3198 3479 0.603707 CCATCGTGGCAATCGGCTAT 60.604 55.000 0.00 0.00 44.01 2.97
3201 3482 1.889105 CGTGGCAATCGGCTATGCT 60.889 57.895 0.00 0.00 44.01 3.79
3355 3636 6.772233 TGATCTCAAGGATGTTGAAACTTTCA 59.228 34.615 0.00 0.00 34.56 2.69
3389 3670 3.853355 AGCTGCTATGCCTATGAACTT 57.147 42.857 0.00 0.00 0.00 2.66
3404 3685 5.769484 ATGAACTTAGATATGACCGACGT 57.231 39.130 0.00 0.00 0.00 4.34
3462 3743 1.474855 GGAGATGCAGAGAAGGAAGCC 60.475 57.143 0.00 0.00 0.00 4.35
3520 3801 4.762251 GCAACTCTCAGGACCAACTTATTT 59.238 41.667 0.00 0.00 0.00 1.40
3606 3887 2.614987 GCCATAAACAAATTGCTGCCCA 60.615 45.455 0.00 0.00 0.00 5.36
3703 3988 5.568685 TTTTTCCTGACGAACATCAACAA 57.431 34.783 0.00 0.00 0.00 2.83
3757 4042 6.012858 ACAAAAAGGTATCCATAGTGGTCTGA 60.013 38.462 0.00 0.00 39.03 3.27
3761 4046 1.043816 ATCCATAGTGGTCTGAGCCG 58.956 55.000 4.17 0.00 39.03 5.52
3784 4072 3.281727 AAAACAGAAGTGAGTGCTCCA 57.718 42.857 0.00 0.00 0.00 3.86
3785 4073 3.281727 AAACAGAAGTGAGTGCTCCAA 57.718 42.857 0.00 0.00 0.00 3.53
3786 4074 3.281727 AACAGAAGTGAGTGCTCCAAA 57.718 42.857 0.00 0.00 0.00 3.28
3787 4075 3.498774 ACAGAAGTGAGTGCTCCAAAT 57.501 42.857 0.00 0.00 0.00 2.32
3788 4076 3.144506 ACAGAAGTGAGTGCTCCAAATG 58.855 45.455 0.00 0.00 0.00 2.32
3789 4077 2.095364 CAGAAGTGAGTGCTCCAAATGC 60.095 50.000 0.00 0.00 0.00 3.56
3790 4078 0.877071 AAGTGAGTGCTCCAAATGCG 59.123 50.000 0.00 0.00 0.00 4.73
3791 4079 0.250467 AGTGAGTGCTCCAAATGCGT 60.250 50.000 0.00 0.00 0.00 5.24
3807 4095 2.912771 TGCGTCTTTTTGAGTCCTGAA 58.087 42.857 0.00 0.00 0.00 3.02
3812 4100 5.173854 GCGTCTTTTTGAGTCCTGAATTTTG 59.826 40.000 0.00 0.00 0.00 2.44
3817 4105 9.500785 TCTTTTTGAGTCCTGAATTTTGTTTTT 57.499 25.926 0.00 0.00 0.00 1.94
3821 4109 6.105333 TGAGTCCTGAATTTTGTTTTTGTGG 58.895 36.000 0.00 0.00 0.00 4.17
3822 4110 6.048732 AGTCCTGAATTTTGTTTTTGTGGT 57.951 33.333 0.00 0.00 0.00 4.16
3823 4111 6.472016 AGTCCTGAATTTTGTTTTTGTGGTT 58.528 32.000 0.00 0.00 0.00 3.67
3824 4112 6.939730 AGTCCTGAATTTTGTTTTTGTGGTTT 59.060 30.769 0.00 0.00 0.00 3.27
3825 4113 8.097662 AGTCCTGAATTTTGTTTTTGTGGTTTA 58.902 29.630 0.00 0.00 0.00 2.01
3826 4114 8.172484 GTCCTGAATTTTGTTTTTGTGGTTTAC 58.828 33.333 0.00 0.00 0.00 2.01
3827 4115 7.334671 TCCTGAATTTTGTTTTTGTGGTTTACC 59.665 33.333 0.00 0.00 0.00 2.85
3831 4119 1.202268 TGTTTTTGTGGTTTACCGGCG 60.202 47.619 0.00 0.00 39.43 6.46
3833 4121 1.959042 TTTTGTGGTTTACCGGCGTA 58.041 45.000 6.01 0.00 39.43 4.42
3851 4139 4.449743 GGCGTACACAGATGTCTTTTGTAA 59.550 41.667 0.00 0.00 40.48 2.41
3937 4294 7.617533 ATTGTTTTCGGATTTTTACTGTTCG 57.382 32.000 0.00 0.00 0.00 3.95
3938 4295 4.971220 TGTTTTCGGATTTTTACTGTTCGC 59.029 37.500 0.00 0.00 0.00 4.70
3960 4317 2.797087 GCAGGAAAATCCATGTCGCATG 60.797 50.000 11.41 11.41 39.61 4.06
3976 4335 3.970828 GCATGTTGGCGAAAATGTAAC 57.029 42.857 12.58 0.00 0.00 2.50
4014 4373 8.859090 ACATGTTAAGAAGACAATCAAATGGAA 58.141 29.630 0.00 0.00 0.00 3.53
4015 4374 9.865321 CATGTTAAGAAGACAATCAAATGGAAT 57.135 29.630 0.00 0.00 0.00 3.01
4022 4381 9.933723 AGAAGACAATCAAATGGAATTTAAAGG 57.066 29.630 0.00 0.00 46.64 3.11
4023 4382 9.154847 GAAGACAATCAAATGGAATTTAAAGGG 57.845 33.333 0.00 0.00 46.64 3.95
4024 4383 8.434589 AGACAATCAAATGGAATTTAAAGGGA 57.565 30.769 0.00 0.00 46.64 4.20
4025 4384 8.534496 AGACAATCAAATGGAATTTAAAGGGAG 58.466 33.333 0.00 0.00 46.64 4.30
4026 4385 7.623630 ACAATCAAATGGAATTTAAAGGGAGG 58.376 34.615 0.00 0.00 46.64 4.30
4027 4386 7.457535 ACAATCAAATGGAATTTAAAGGGAGGA 59.542 33.333 0.00 0.00 46.64 3.71
4028 4387 7.666063 ATCAAATGGAATTTAAAGGGAGGAG 57.334 36.000 0.00 0.00 46.64 3.69
4029 4388 5.957774 TCAAATGGAATTTAAAGGGAGGAGG 59.042 40.000 0.00 0.00 46.64 4.30
4030 4389 4.542906 ATGGAATTTAAAGGGAGGAGGG 57.457 45.455 0.00 0.00 0.00 4.30
4031 4390 3.274383 TGGAATTTAAAGGGAGGAGGGT 58.726 45.455 0.00 0.00 0.00 4.34
4032 4391 3.268595 TGGAATTTAAAGGGAGGAGGGTC 59.731 47.826 0.00 0.00 0.00 4.46
4148 4531 8.224389 TGGAGAACAACCATGACATTATATTG 57.776 34.615 0.00 0.00 32.03 1.90
4224 4610 7.325660 ACTGTGAAATGATGGCTAATACTTG 57.674 36.000 0.00 0.00 0.00 3.16
4268 4654 2.224354 ACCAAGGCAGCAAAAATGAAGG 60.224 45.455 0.00 0.00 0.00 3.46
4279 4665 6.813152 CAGCAAAAATGAAGGGGTAATACAAG 59.187 38.462 0.00 0.00 0.00 3.16
4333 4719 2.556144 TTCTTCTGCAGCTGTCACAT 57.444 45.000 16.64 0.00 0.00 3.21
4372 4758 8.197988 AGCACTACGATATCCAAGTTTAAAAG 57.802 34.615 0.00 0.00 0.00 2.27
4421 4807 6.964807 AACAATGCCATCAATAGAGCAATA 57.035 33.333 0.00 0.00 38.99 1.90
4441 4827 6.625960 GCAATACGATATAGGACAGATGCTCA 60.626 42.308 0.00 0.00 0.00 4.26
4457 4843 3.325870 TGCTCAGAAACACCATAAGACG 58.674 45.455 0.00 0.00 0.00 4.18
4462 4848 3.364023 CAGAAACACCATAAGACGACGAC 59.636 47.826 0.00 0.00 0.00 4.34
4463 4849 3.005050 AGAAACACCATAAGACGACGACA 59.995 43.478 0.00 0.00 0.00 4.35
4464 4850 3.374220 AACACCATAAGACGACGACAA 57.626 42.857 0.00 0.00 0.00 3.18
4471 4857 4.553815 CCATAAGACGACGACAATATAGCG 59.446 45.833 0.00 0.00 0.00 4.26
4475 4861 1.053048 CGACGACAATATAGCGCCAG 58.947 55.000 2.29 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.107508 CCATGTCATCCCAGCGACTT 60.108 55.000 0.00 0.00 33.18 3.01
12 13 2.301505 CGAACTCGCCATGTCATCC 58.698 57.895 0.00 0.00 0.00 3.51
24 25 4.430423 CTTGGCGCACGCGAACTC 62.430 66.667 15.93 0.00 43.06 3.01
29 30 2.246397 CATATCTTGGCGCACGCG 59.754 61.111 10.83 3.53 43.06 6.01
55 56 0.661020 CACCCTTGTTGTCGTTGGAC 59.339 55.000 0.00 0.00 43.71 4.02
57 58 1.064952 GAACACCCTTGTTGTCGTTGG 59.935 52.381 0.00 0.00 46.43 3.77
66 67 0.393077 CTCGTCCTGAACACCCTTGT 59.607 55.000 0.00 0.00 37.67 3.16
77 78 2.602257 TATGTGGCAATCTCGTCCTG 57.398 50.000 0.00 0.00 0.00 3.86
78 79 3.306364 GCTATATGTGGCAATCTCGTCCT 60.306 47.826 0.00 0.00 0.00 3.85
91 92 8.948631 ATAACTCCCGAATAATGCTATATGTG 57.051 34.615 0.00 0.00 0.00 3.21
102 103 9.908747 TTTTTGGAATCTATAACTCCCGAATAA 57.091 29.630 0.00 0.00 0.00 1.40
104 105 8.996651 ATTTTTGGAATCTATAACTCCCGAAT 57.003 30.769 0.00 0.00 0.00 3.34
168 169 1.610522 GGCATGTGTGAGCTCACTTTT 59.389 47.619 38.81 23.94 46.55 2.27
172 173 0.886043 TGTGGCATGTGTGAGCTCAC 60.886 55.000 35.04 35.04 46.59 3.51
173 174 0.886043 GTGTGGCATGTGTGAGCTCA 60.886 55.000 13.74 13.74 0.00 4.26
174 175 0.886043 TGTGTGGCATGTGTGAGCTC 60.886 55.000 6.82 6.82 0.00 4.09
175 176 0.251033 ATGTGTGGCATGTGTGAGCT 60.251 50.000 0.00 0.00 36.26 4.09
176 177 1.452110 TATGTGTGGCATGTGTGAGC 58.548 50.000 0.00 0.00 38.47 4.26
185 187 3.605634 GTGTCTGGTTATATGTGTGGCA 58.394 45.455 0.00 0.00 0.00 4.92
189 191 3.259064 GTGCGTGTCTGGTTATATGTGT 58.741 45.455 0.00 0.00 0.00 3.72
202 204 1.058404 GACTAGGAAACGTGCGTGTC 58.942 55.000 6.37 6.37 0.00 3.67
203 205 0.386476 TGACTAGGAAACGTGCGTGT 59.614 50.000 0.00 0.00 0.00 4.49
206 208 0.782384 GTGTGACTAGGAAACGTGCG 59.218 55.000 0.00 0.00 0.00 5.34
213 215 2.498078 TGTGTGTGTGTGTGACTAGGAA 59.502 45.455 0.00 0.00 0.00 3.36
221 223 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
222 224 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
223 225 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
224 226 2.753055 TAGTGTGTGTGTGTGTGTGT 57.247 45.000 0.00 0.00 0.00 3.72
225 227 5.465056 TCATTATAGTGTGTGTGTGTGTGTG 59.535 40.000 0.00 0.00 0.00 3.82
226 228 5.606505 TCATTATAGTGTGTGTGTGTGTGT 58.393 37.500 0.00 0.00 0.00 3.72
227 229 6.368516 TCATCATTATAGTGTGTGTGTGTGTG 59.631 38.462 0.00 0.00 0.00 3.82
228 230 6.463360 TCATCATTATAGTGTGTGTGTGTGT 58.537 36.000 0.00 0.00 0.00 3.72
229 231 6.966435 TCATCATTATAGTGTGTGTGTGTG 57.034 37.500 0.00 0.00 0.00 3.82
230 232 7.977789 TTTCATCATTATAGTGTGTGTGTGT 57.022 32.000 0.00 0.00 0.00 3.72
231 233 8.506437 AGTTTTCATCATTATAGTGTGTGTGTG 58.494 33.333 0.00 0.00 0.00 3.82
232 234 8.621532 AGTTTTCATCATTATAGTGTGTGTGT 57.378 30.769 0.00 0.00 0.00 3.72
277 279 9.187455 GGTGGTGTGTGTAGTAAAAATTTATTG 57.813 33.333 0.00 0.00 0.00 1.90
284 286 8.595421 TCTATATGGTGGTGTGTGTAGTAAAAA 58.405 33.333 0.00 0.00 0.00 1.94
302 304 8.964476 AGGTTTTCCGCATAATATCTATATGG 57.036 34.615 0.00 0.00 46.35 2.74
438 440 9.388506 TCTAGTTTACTAGCTTAACACGTCTAT 57.611 33.333 11.27 0.00 44.24 1.98
439 441 8.660373 GTCTAGTTTACTAGCTTAACACGTCTA 58.340 37.037 11.27 0.00 44.24 2.59
440 442 7.390162 AGTCTAGTTTACTAGCTTAACACGTCT 59.610 37.037 11.27 0.00 44.24 4.18
441 443 7.525759 AGTCTAGTTTACTAGCTTAACACGTC 58.474 38.462 11.27 0.00 44.24 4.34
442 444 7.446001 AGTCTAGTTTACTAGCTTAACACGT 57.554 36.000 11.27 0.00 44.24 4.49
443 445 8.446273 TGTAGTCTAGTTTACTAGCTTAACACG 58.554 37.037 11.27 0.00 44.24 4.49
462 464 9.569122 ACCATTACTTTGTATGTTTTGTAGTCT 57.431 29.630 0.00 0.00 0.00 3.24
467 469 9.877178 TTGAAACCATTACTTTGTATGTTTTGT 57.123 25.926 0.00 0.00 0.00 2.83
470 472 9.487790 CCATTGAAACCATTACTTTGTATGTTT 57.512 29.630 0.00 0.00 0.00 2.83
471 473 8.646900 ACCATTGAAACCATTACTTTGTATGTT 58.353 29.630 0.00 0.00 0.00 2.71
472 474 8.189119 ACCATTGAAACCATTACTTTGTATGT 57.811 30.769 0.00 0.00 0.00 2.29
480 482 9.693739 TGTGATAATACCATTGAAACCATTACT 57.306 29.630 0.00 0.00 0.00 2.24
484 486 8.641541 GGATTGTGATAATACCATTGAAACCAT 58.358 33.333 0.00 0.00 0.00 3.55
485 487 7.617329 TGGATTGTGATAATACCATTGAAACCA 59.383 33.333 0.00 0.00 0.00 3.67
486 488 8.006298 TGGATTGTGATAATACCATTGAAACC 57.994 34.615 0.00 0.00 0.00 3.27
487 489 9.467258 CATGGATTGTGATAATACCATTGAAAC 57.533 33.333 0.00 0.00 36.22 2.78
488 490 9.199645 ACATGGATTGTGATAATACCATTGAAA 57.800 29.630 0.00 0.00 37.11 2.69
489 491 8.765488 ACATGGATTGTGATAATACCATTGAA 57.235 30.769 0.00 0.00 37.11 2.69
490 492 9.859152 TTACATGGATTGTGATAATACCATTGA 57.141 29.630 0.00 0.00 39.48 2.57
553 555 8.980596 TGCATTTATCAGAAAATTAGATTGGGT 58.019 29.630 0.00 0.00 0.00 4.51
563 572 8.231837 GCAAAACATGTGCATTTATCAGAAAAT 58.768 29.630 0.00 0.00 41.80 1.82
576 585 2.687700 ACAAAGGCAAAACATGTGCA 57.312 40.000 0.00 0.00 44.07 4.57
577 586 4.331168 TGTAAACAAAGGCAAAACATGTGC 59.669 37.500 0.00 0.00 41.45 4.57
665 674 4.870636 TGATCTTTGCCCAATATTGAGGT 58.129 39.130 17.23 1.76 0.00 3.85
670 679 9.097257 CGTAAAATTTGATCTTTGCCCAATATT 57.903 29.630 0.00 0.00 0.00 1.28
671 680 7.710475 CCGTAAAATTTGATCTTTGCCCAATAT 59.290 33.333 0.00 0.00 0.00 1.28
687 696 8.050778 TCATGATAAGAAGCACCGTAAAATTT 57.949 30.769 0.00 0.00 0.00 1.82
696 705 8.677148 TTTTAGGTATCATGATAAGAAGCACC 57.323 34.615 16.97 14.15 0.00 5.01
782 791 9.863650 AGCCTGTCTCAATATACTACTTTAGTA 57.136 33.333 0.00 0.00 44.64 1.82
783 792 8.770010 AGCCTGTCTCAATATACTACTTTAGT 57.230 34.615 0.00 0.00 42.68 2.24
948 974 6.183360 GCTACTTGGGTTTAAGGAAAGTTTGT 60.183 38.462 0.00 0.00 33.37 2.83
991 1017 4.847367 GGAGGCCATGGCTTGGGG 62.847 72.222 34.70 0.00 46.55 4.96
996 1022 2.381941 GGAAGAGGAGGCCATGGCT 61.382 63.158 34.70 21.29 42.48 4.75
1408 1435 1.943340 GCAAGAGATAAAGGGGCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
1455 1482 1.745653 TGTCCTACTCGCATCTGTCAG 59.254 52.381 0.00 0.00 0.00 3.51
1658 1938 4.138290 TCAACGCCTCTTTGGATTGTAAA 58.862 39.130 0.00 0.00 38.35 2.01
1724 2004 9.317936 CTAGTCATGCAAAGTCATAACTCATAA 57.682 33.333 0.00 0.00 33.48 1.90
1725 2005 8.695456 TCTAGTCATGCAAAGTCATAACTCATA 58.305 33.333 0.00 0.00 33.48 2.15
1726 2006 7.559486 TCTAGTCATGCAAAGTCATAACTCAT 58.441 34.615 0.00 0.00 33.48 2.90
1727 2007 6.935167 TCTAGTCATGCAAAGTCATAACTCA 58.065 36.000 0.00 0.00 33.48 3.41
1728 2008 7.708322 TCATCTAGTCATGCAAAGTCATAACTC 59.292 37.037 0.00 0.00 33.48 3.01
1729 2009 7.559486 TCATCTAGTCATGCAAAGTCATAACT 58.441 34.615 0.00 0.00 37.32 2.24
1730 2010 7.776933 TCATCTAGTCATGCAAAGTCATAAC 57.223 36.000 0.00 0.00 0.00 1.89
1783 2063 7.165460 TGAACACGACATCCTCTTCTTTATA 57.835 36.000 0.00 0.00 0.00 0.98
1825 2105 7.095607 CCACTAAACTTCAAGTCTGTGACATAC 60.096 40.741 15.09 0.00 34.60 2.39
1848 2128 4.336713 GCCAGATTAAACTCCTCATTCCAC 59.663 45.833 0.00 0.00 0.00 4.02
1954 2235 4.023878 TGGTTGCCATAGTTTGACGTTAAC 60.024 41.667 6.43 6.43 0.00 2.01
2037 2318 1.167851 ACACACCGATTCCAAGCATG 58.832 50.000 0.00 0.00 0.00 4.06
2038 2319 1.909700 AACACACCGATTCCAAGCAT 58.090 45.000 0.00 0.00 0.00 3.79
2039 2320 1.686355 AAACACACCGATTCCAAGCA 58.314 45.000 0.00 0.00 0.00 3.91
2040 2321 2.793278 AAAACACACCGATTCCAAGC 57.207 45.000 0.00 0.00 0.00 4.01
2041 2322 6.904498 TGTATAAAAACACACCGATTCCAAG 58.096 36.000 0.00 0.00 0.00 3.61
2042 2323 6.879276 TGTATAAAAACACACCGATTCCAA 57.121 33.333 0.00 0.00 0.00 3.53
2059 2340 9.357161 ACTTGGAAAACAAATACAGGTGTATAA 57.643 29.630 3.06 0.00 40.10 0.98
2060 2341 8.788806 CACTTGGAAAACAAATACAGGTGTATA 58.211 33.333 3.06 0.00 40.10 1.47
2061 2342 7.286775 ACACTTGGAAAACAAATACAGGTGTAT 59.713 33.333 8.74 0.00 46.11 2.29
2062 2343 6.603997 ACACTTGGAAAACAAATACAGGTGTA 59.396 34.615 8.74 0.00 46.11 2.90
2063 2344 5.420739 ACACTTGGAAAACAAATACAGGTGT 59.579 36.000 5.26 5.26 44.17 4.16
2064 2345 5.901552 ACACTTGGAAAACAAATACAGGTG 58.098 37.500 0.00 0.00 42.54 4.00
2065 2346 7.724061 AGATACACTTGGAAAACAAATACAGGT 59.276 33.333 0.00 0.00 38.91 4.00
2066 2347 8.110860 AGATACACTTGGAAAACAAATACAGG 57.889 34.615 0.00 0.00 38.91 4.00
2069 2350 9.836076 GGTAAGATACACTTGGAAAACAAATAC 57.164 33.333 0.00 0.00 38.91 1.89
2070 2351 9.802039 AGGTAAGATACACTTGGAAAACAAATA 57.198 29.630 0.00 0.00 38.91 1.40
2071 2352 8.576442 CAGGTAAGATACACTTGGAAAACAAAT 58.424 33.333 0.00 0.00 38.91 2.32
2072 2353 7.469456 GCAGGTAAGATACACTTGGAAAACAAA 60.469 37.037 0.00 0.00 38.91 2.83
2073 2354 6.016610 GCAGGTAAGATACACTTGGAAAACAA 60.017 38.462 0.00 0.00 39.38 2.83
2074 2355 5.472137 GCAGGTAAGATACACTTGGAAAACA 59.528 40.000 0.00 0.00 39.38 2.83
2075 2356 5.106277 GGCAGGTAAGATACACTTGGAAAAC 60.106 44.000 0.00 0.00 39.38 2.43
2076 2357 5.007682 GGCAGGTAAGATACACTTGGAAAA 58.992 41.667 0.00 0.00 39.38 2.29
2077 2358 4.042311 TGGCAGGTAAGATACACTTGGAAA 59.958 41.667 0.00 0.00 39.38 3.13
2078 2359 3.585289 TGGCAGGTAAGATACACTTGGAA 59.415 43.478 0.00 0.00 39.38 3.53
2079 2360 3.178046 TGGCAGGTAAGATACACTTGGA 58.822 45.455 0.00 0.00 39.38 3.53
2080 2361 3.627395 TGGCAGGTAAGATACACTTGG 57.373 47.619 0.00 0.00 39.38 3.61
2081 2362 4.333649 CACATGGCAGGTAAGATACACTTG 59.666 45.833 3.74 0.00 39.38 3.16
2082 2363 4.517285 CACATGGCAGGTAAGATACACTT 58.483 43.478 3.74 0.00 42.04 3.16
2083 2364 3.682718 GCACATGGCAGGTAAGATACACT 60.683 47.826 3.74 0.00 43.97 3.55
2084 2365 2.614057 GCACATGGCAGGTAAGATACAC 59.386 50.000 3.74 0.00 43.97 2.90
2085 2366 2.917933 GCACATGGCAGGTAAGATACA 58.082 47.619 3.74 0.00 43.97 2.29
2097 2378 2.070783 CAGGTGAAATTTGCACATGGC 58.929 47.619 13.29 0.00 42.44 4.40
2098 2379 3.256383 TCTCAGGTGAAATTTGCACATGG 59.744 43.478 19.28 11.64 45.18 3.66
2099 2380 4.508461 TCTCAGGTGAAATTTGCACATG 57.492 40.909 14.66 14.66 46.12 3.21
2100 2381 5.244402 TGATTCTCAGGTGAAATTTGCACAT 59.756 36.000 9.72 0.00 37.99 3.21
2101 2382 4.583907 TGATTCTCAGGTGAAATTTGCACA 59.416 37.500 9.72 0.00 37.99 4.57
2102 2383 5.125100 TGATTCTCAGGTGAAATTTGCAC 57.875 39.130 0.00 0.00 35.56 4.57
2103 2384 5.787953 TTGATTCTCAGGTGAAATTTGCA 57.212 34.783 0.00 0.00 0.00 4.08
2104 2385 6.346040 CGTTTTGATTCTCAGGTGAAATTTGC 60.346 38.462 0.00 0.00 0.00 3.68
2105 2386 6.917477 TCGTTTTGATTCTCAGGTGAAATTTG 59.083 34.615 0.00 0.00 0.00 2.32
2106 2387 6.918022 GTCGTTTTGATTCTCAGGTGAAATTT 59.082 34.615 0.00 0.00 0.00 1.82
2107 2388 6.438763 GTCGTTTTGATTCTCAGGTGAAATT 58.561 36.000 0.00 0.00 0.00 1.82
2108 2389 5.334105 CGTCGTTTTGATTCTCAGGTGAAAT 60.334 40.000 0.00 0.00 0.00 2.17
2109 2390 4.025229 CGTCGTTTTGATTCTCAGGTGAAA 60.025 41.667 0.00 0.00 0.00 2.69
2110 2391 3.493129 CGTCGTTTTGATTCTCAGGTGAA 59.507 43.478 0.00 0.00 0.00 3.18
2111 2392 3.057019 CGTCGTTTTGATTCTCAGGTGA 58.943 45.455 0.00 0.00 0.00 4.02
2112 2393 2.157668 CCGTCGTTTTGATTCTCAGGTG 59.842 50.000 0.00 0.00 0.00 4.00
2113 2394 2.036733 TCCGTCGTTTTGATTCTCAGGT 59.963 45.455 0.00 0.00 0.00 4.00
2114 2395 2.683968 TCCGTCGTTTTGATTCTCAGG 58.316 47.619 0.00 0.00 0.00 3.86
2115 2396 3.000674 CGATCCGTCGTTTTGATTCTCAG 60.001 47.826 0.00 0.00 42.78 3.35
2116 2397 2.921121 CGATCCGTCGTTTTGATTCTCA 59.079 45.455 0.00 0.00 42.78 3.27
2117 2398 3.554670 CGATCCGTCGTTTTGATTCTC 57.445 47.619 0.00 0.00 42.78 2.87
2129 2410 4.500603 AATATACAGACCACGATCCGTC 57.499 45.455 0.00 0.00 38.32 4.79
2130 2411 4.931661 AAATATACAGACCACGATCCGT 57.068 40.909 0.00 0.00 42.36 4.69
2131 2412 6.210796 TGTAAAATATACAGACCACGATCCG 58.789 40.000 0.00 0.00 0.00 4.18
2132 2413 6.645415 CCTGTAAAATATACAGACCACGATCC 59.355 42.308 15.31 0.00 45.69 3.36
2133 2414 6.645415 CCCTGTAAAATATACAGACCACGATC 59.355 42.308 15.31 0.00 45.69 3.69
2134 2415 6.463897 CCCCTGTAAAATATACAGACCACGAT 60.464 42.308 15.31 0.00 45.69 3.73
2135 2416 5.163385 CCCCTGTAAAATATACAGACCACGA 60.163 44.000 15.31 0.00 45.69 4.35
2136 2417 5.054477 CCCCTGTAAAATATACAGACCACG 58.946 45.833 15.31 0.92 45.69 4.94
2137 2418 4.820173 GCCCCTGTAAAATATACAGACCAC 59.180 45.833 15.31 1.28 45.69 4.16
2138 2419 4.475381 TGCCCCTGTAAAATATACAGACCA 59.525 41.667 15.31 7.58 45.69 4.02
2139 2420 5.043737 TGCCCCTGTAAAATATACAGACC 57.956 43.478 15.31 5.57 45.69 3.85
2140 2421 7.399245 TTTTGCCCCTGTAAAATATACAGAC 57.601 36.000 15.31 6.71 45.69 3.51
2141 2422 6.096282 GCTTTTGCCCCTGTAAAATATACAGA 59.904 38.462 15.31 0.00 42.28 3.41
2142 2423 6.273071 GCTTTTGCCCCTGTAAAATATACAG 58.727 40.000 8.33 8.33 40.90 2.74
2143 2424 5.163602 CGCTTTTGCCCCTGTAAAATATACA 60.164 40.000 0.00 0.00 43.93 2.29
2144 2425 5.278604 CGCTTTTGCCCCTGTAAAATATAC 58.721 41.667 0.00 0.00 43.93 1.47
2145 2426 4.202070 GCGCTTTTGCCCCTGTAAAATATA 60.202 41.667 0.00 0.00 43.93 0.86
2146 2427 3.430236 GCGCTTTTGCCCCTGTAAAATAT 60.430 43.478 0.00 0.00 43.93 1.28
2147 2428 2.094442 GCGCTTTTGCCCCTGTAAAATA 60.094 45.455 0.00 0.00 43.93 1.40
2148 2429 1.337728 GCGCTTTTGCCCCTGTAAAAT 60.338 47.619 0.00 0.00 43.93 1.82
2149 2430 0.032815 GCGCTTTTGCCCCTGTAAAA 59.967 50.000 0.00 0.00 43.93 1.52
2150 2431 0.825840 AGCGCTTTTGCCCCTGTAAA 60.826 50.000 2.64 0.00 43.93 2.01
2151 2432 0.037017 TAGCGCTTTTGCCCCTGTAA 59.963 50.000 18.68 0.00 43.93 2.41
2152 2433 0.392461 CTAGCGCTTTTGCCCCTGTA 60.392 55.000 18.68 0.00 43.93 2.74
2153 2434 1.675641 CTAGCGCTTTTGCCCCTGT 60.676 57.895 18.68 0.00 43.93 4.00
2154 2435 0.960364 TTCTAGCGCTTTTGCCCCTG 60.960 55.000 18.68 0.00 43.93 4.45
2155 2436 0.251165 TTTCTAGCGCTTTTGCCCCT 60.251 50.000 18.68 0.00 43.93 4.79
2156 2437 0.109272 GTTTCTAGCGCTTTTGCCCC 60.109 55.000 18.68 0.00 43.93 5.80
2157 2438 0.454452 CGTTTCTAGCGCTTTTGCCC 60.454 55.000 18.68 0.00 43.93 5.36
2158 2439 0.515564 TCGTTTCTAGCGCTTTTGCC 59.484 50.000 18.68 0.00 43.93 4.52
2159 2440 1.070175 TGTCGTTTCTAGCGCTTTTGC 60.070 47.619 18.68 1.58 43.23 3.68
2160 2441 2.941891 TGTCGTTTCTAGCGCTTTTG 57.058 45.000 18.68 6.84 0.00 2.44
2161 2442 3.120304 GGATTGTCGTTTCTAGCGCTTTT 60.120 43.478 18.68 0.00 0.00 2.27
2162 2443 2.415512 GGATTGTCGTTTCTAGCGCTTT 59.584 45.455 18.68 0.00 0.00 3.51
2163 2444 2.000447 GGATTGTCGTTTCTAGCGCTT 59.000 47.619 18.68 0.00 0.00 4.68
2164 2445 1.067142 TGGATTGTCGTTTCTAGCGCT 60.067 47.619 17.26 17.26 0.00 5.92
2165 2446 1.355971 TGGATTGTCGTTTCTAGCGC 58.644 50.000 0.00 0.00 0.00 5.92
2166 2447 3.616821 TGATTGGATTGTCGTTTCTAGCG 59.383 43.478 0.00 0.00 0.00 4.26
2167 2448 5.447818 CCTTGATTGGATTGTCGTTTCTAGC 60.448 44.000 0.00 0.00 0.00 3.42
2168 2449 5.447818 GCCTTGATTGGATTGTCGTTTCTAG 60.448 44.000 0.00 0.00 0.00 2.43
2169 2450 4.394920 GCCTTGATTGGATTGTCGTTTCTA 59.605 41.667 0.00 0.00 0.00 2.10
2170 2451 3.191371 GCCTTGATTGGATTGTCGTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
2171 2452 3.501950 GCCTTGATTGGATTGTCGTTTC 58.498 45.455 0.00 0.00 0.00 2.78
2172 2453 2.231235 GGCCTTGATTGGATTGTCGTTT 59.769 45.455 0.00 0.00 0.00 3.60
2173 2454 1.818674 GGCCTTGATTGGATTGTCGTT 59.181 47.619 0.00 0.00 0.00 3.85
2174 2455 1.004745 AGGCCTTGATTGGATTGTCGT 59.995 47.619 0.00 0.00 0.00 4.34
2175 2456 1.755179 AGGCCTTGATTGGATTGTCG 58.245 50.000 0.00 0.00 0.00 4.35
2176 2457 4.279420 GGATTAGGCCTTGATTGGATTGTC 59.721 45.833 12.58 0.00 0.00 3.18
2177 2458 4.218312 GGATTAGGCCTTGATTGGATTGT 58.782 43.478 12.58 0.00 0.00 2.71
2178 2459 3.575687 GGGATTAGGCCTTGATTGGATTG 59.424 47.826 12.58 0.00 0.00 2.67
2179 2460 3.468625 AGGGATTAGGCCTTGATTGGATT 59.531 43.478 12.58 0.00 0.00 3.01
2180 2461 3.066704 AGGGATTAGGCCTTGATTGGAT 58.933 45.455 12.58 0.00 0.00 3.41
2181 2462 2.502745 AGGGATTAGGCCTTGATTGGA 58.497 47.619 12.58 0.00 0.00 3.53
2182 2463 4.664688 ATAGGGATTAGGCCTTGATTGG 57.335 45.455 12.58 0.00 0.00 3.16
2183 2464 6.380079 ACTATAGGGATTAGGCCTTGATTG 57.620 41.667 12.58 0.00 0.00 2.67
2184 2465 7.147123 ACAAACTATAGGGATTAGGCCTTGATT 60.147 37.037 12.58 0.00 0.00 2.57
2185 2466 6.332901 ACAAACTATAGGGATTAGGCCTTGAT 59.667 38.462 12.58 5.65 0.00 2.57
2186 2467 5.670361 ACAAACTATAGGGATTAGGCCTTGA 59.330 40.000 12.58 0.00 0.00 3.02
2187 2468 5.941788 ACAAACTATAGGGATTAGGCCTTG 58.058 41.667 12.58 0.00 0.00 3.61
2188 2469 5.221661 CGACAAACTATAGGGATTAGGCCTT 60.222 44.000 12.58 0.00 0.00 4.35
2189 2470 4.283722 CGACAAACTATAGGGATTAGGCCT 59.716 45.833 11.78 11.78 0.00 5.19
2190 2471 4.566987 CGACAAACTATAGGGATTAGGCC 58.433 47.826 4.43 0.00 0.00 5.19
2191 2472 3.995048 GCGACAAACTATAGGGATTAGGC 59.005 47.826 4.43 0.00 0.00 3.93
2192 2473 5.470047 AGCGACAAACTATAGGGATTAGG 57.530 43.478 4.43 0.00 0.00 2.69
2193 2474 7.216973 ACTAGCGACAAACTATAGGGATTAG 57.783 40.000 4.43 0.00 0.00 1.73
2194 2475 8.696043 TTACTAGCGACAAACTATAGGGATTA 57.304 34.615 4.43 0.00 0.00 1.75
2195 2476 7.592885 TTACTAGCGACAAACTATAGGGATT 57.407 36.000 4.43 0.00 0.00 3.01
2196 2477 7.778185 ATTACTAGCGACAAACTATAGGGAT 57.222 36.000 4.43 0.00 0.00 3.85
2236 2517 4.079558 ACTGATGAGGCATTTCAAGGGTAT 60.080 41.667 0.00 0.00 0.00 2.73
2372 2653 0.391661 TTCTGCTGCTCCGATTCCAC 60.392 55.000 0.00 0.00 0.00 4.02
2670 2951 1.112315 AAAAATCTGCCCGTGTGCCA 61.112 50.000 0.00 0.00 0.00 4.92
2739 3020 3.306088 CGGCATAGGTATTCCAATCGACT 60.306 47.826 0.00 0.00 35.89 4.18
2765 3046 1.593006 CCTTAATGTAGTTGCTCGCCG 59.407 52.381 0.00 0.00 0.00 6.46
2925 3206 3.953612 TCTTGCAGTTTGACATTTGGAGT 59.046 39.130 0.00 0.00 0.00 3.85
2994 3275 6.072064 CCTCAGCTTCTTCAATTTCATCAAGT 60.072 38.462 0.00 0.00 0.00 3.16
3003 3284 2.824341 CAAGGCCTCAGCTTCTTCAATT 59.176 45.455 5.23 0.00 39.73 2.32
3004 3285 2.224967 ACAAGGCCTCAGCTTCTTCAAT 60.225 45.455 5.23 0.00 39.73 2.57
3006 3287 0.767375 ACAAGGCCTCAGCTTCTTCA 59.233 50.000 5.23 0.00 39.73 3.02
3020 3301 3.142174 GACTCCCACTCTTTCAACAAGG 58.858 50.000 0.00 0.00 0.00 3.61
3052 3333 2.028476 TCGGAACATGGAAGTCGAATGT 60.028 45.455 0.00 0.00 36.10 2.71
3054 3335 3.328382 TTCGGAACATGGAAGTCGAAT 57.672 42.857 0.00 0.00 32.78 3.34
3069 3350 2.831526 TCCAGTGATCAAGACATTCGGA 59.168 45.455 0.00 0.00 0.00 4.55
3072 3353 4.747108 CGGTATCCAGTGATCAAGACATTC 59.253 45.833 0.00 0.00 32.18 2.67
3082 3363 2.695666 CCTTCTGTCGGTATCCAGTGAT 59.304 50.000 0.00 0.00 34.87 3.06
3090 3371 2.111384 AGCATGTCCTTCTGTCGGTAT 58.889 47.619 0.00 0.00 0.00 2.73
3096 3377 1.059098 TGTCCAGCATGTCCTTCTGT 58.941 50.000 0.00 0.00 0.00 3.41
3153 3434 0.615331 TGCTCGAAGGAGGCATCTTT 59.385 50.000 0.00 0.00 40.80 2.52
3198 3479 1.817357 CAGCATCACCTTTCTCAGCA 58.183 50.000 0.00 0.00 0.00 4.41
3201 3482 0.321346 TCGCAGCATCACCTTTCTCA 59.679 50.000 0.00 0.00 0.00 3.27
3355 3636 0.038526 GCAGCTTGCAGCAGTTGAAT 60.039 50.000 6.45 0.00 45.56 2.57
3404 3685 3.007506 TCTCATACGAGCCCTTGACAAAA 59.992 43.478 0.00 0.00 39.30 2.44
3462 3743 3.084039 TGATGCCTTTGTTGAGCTTAGG 58.916 45.455 0.00 0.00 0.00 2.69
3606 3887 2.438021 TGCTACAAACCTGTGGAGAACT 59.562 45.455 0.00 0.00 36.15 3.01
3686 3971 2.872245 ACACTTGTTGATGTTCGTCAGG 59.128 45.455 0.00 0.00 0.00 3.86
3701 3986 7.951530 ATTTTGCAGGATTTTAGAACACTTG 57.048 32.000 0.00 0.00 0.00 3.16
3702 3987 8.962884 AAATTTTGCAGGATTTTAGAACACTT 57.037 26.923 4.15 0.00 0.00 3.16
3703 3988 7.382218 CGAAATTTTGCAGGATTTTAGAACACT 59.618 33.333 9.76 0.00 0.00 3.55
3713 3998 2.036992 TGTGGCGAAATTTTGCAGGATT 59.963 40.909 27.54 0.00 39.39 3.01
3783 4071 3.976942 CAGGACTCAAAAAGACGCATTTG 59.023 43.478 0.00 0.00 37.77 2.32
3784 4072 3.882888 TCAGGACTCAAAAAGACGCATTT 59.117 39.130 0.00 0.00 0.00 2.32
3785 4073 3.476552 TCAGGACTCAAAAAGACGCATT 58.523 40.909 0.00 0.00 0.00 3.56
3786 4074 3.126001 TCAGGACTCAAAAAGACGCAT 57.874 42.857 0.00 0.00 0.00 4.73
3787 4075 2.613026 TCAGGACTCAAAAAGACGCA 57.387 45.000 0.00 0.00 0.00 5.24
3788 4076 4.489679 AATTCAGGACTCAAAAAGACGC 57.510 40.909 0.00 0.00 0.00 5.19
3789 4077 6.265577 ACAAAATTCAGGACTCAAAAAGACG 58.734 36.000 0.00 0.00 0.00 4.18
3790 4078 8.479313 AAACAAAATTCAGGACTCAAAAAGAC 57.521 30.769 0.00 0.00 0.00 3.01
3791 4079 9.500785 AAAAACAAAATTCAGGACTCAAAAAGA 57.499 25.926 0.00 0.00 0.00 2.52
3807 4095 4.333095 GCCGGTAAACCACAAAAACAAAAT 59.667 37.500 1.90 0.00 35.14 1.82
3812 4100 1.202279 ACGCCGGTAAACCACAAAAAC 60.202 47.619 1.90 0.00 35.14 2.43
3817 4105 0.599728 GTGTACGCCGGTAAACCACA 60.600 55.000 1.90 0.00 31.72 4.17
3821 4109 1.657094 CATCTGTGTACGCCGGTAAAC 59.343 52.381 1.90 0.00 37.37 2.01
3822 4110 1.273048 ACATCTGTGTACGCCGGTAAA 59.727 47.619 1.90 0.00 36.63 2.01
3823 4111 0.889994 ACATCTGTGTACGCCGGTAA 59.110 50.000 1.90 0.00 36.63 2.85
3824 4112 0.452987 GACATCTGTGTACGCCGGTA 59.547 55.000 1.90 0.00 39.09 4.02
3825 4113 1.214589 GACATCTGTGTACGCCGGT 59.785 57.895 1.90 0.00 39.09 5.28
3826 4114 0.108804 AAGACATCTGTGTACGCCGG 60.109 55.000 3.51 0.00 39.09 6.13
3827 4115 1.710013 AAAGACATCTGTGTACGCCG 58.290 50.000 3.51 0.00 39.09 6.46
3831 4119 7.709269 TCACTTACAAAAGACATCTGTGTAC 57.291 36.000 5.57 0.00 39.09 2.90
3833 4121 7.624360 TTTCACTTACAAAAGACATCTGTGT 57.376 32.000 4.43 4.43 42.49 3.72
3916 4273 4.086105 CGCGAACAGTAAAAATCCGAAAAC 59.914 41.667 0.00 0.00 0.00 2.43
3937 4294 0.248215 CGACATGGATTTTCCTGCGC 60.248 55.000 0.00 0.00 37.46 6.09
3938 4295 0.248215 GCGACATGGATTTTCCTGCG 60.248 55.000 0.00 0.00 37.46 5.18
3960 4317 2.724174 GCACAGTTACATTTTCGCCAAC 59.276 45.455 0.00 0.00 0.00 3.77
4010 4369 3.268595 GACCCTCCTCCCTTTAAATTCCA 59.731 47.826 0.00 0.00 0.00 3.53
4014 4373 2.242452 GCTGACCCTCCTCCCTTTAAAT 59.758 50.000 0.00 0.00 0.00 1.40
4015 4374 1.633945 GCTGACCCTCCTCCCTTTAAA 59.366 52.381 0.00 0.00 0.00 1.52
4016 4375 1.286248 GCTGACCCTCCTCCCTTTAA 58.714 55.000 0.00 0.00 0.00 1.52
4017 4376 0.118346 TGCTGACCCTCCTCCCTTTA 59.882 55.000 0.00 0.00 0.00 1.85
4018 4377 0.551131 ATGCTGACCCTCCTCCCTTT 60.551 55.000 0.00 0.00 0.00 3.11
4019 4378 1.083706 ATGCTGACCCTCCTCCCTT 59.916 57.895 0.00 0.00 0.00 3.95
4020 4379 1.692042 CATGCTGACCCTCCTCCCT 60.692 63.158 0.00 0.00 0.00 4.20
4021 4380 2.750657 CCATGCTGACCCTCCTCCC 61.751 68.421 0.00 0.00 0.00 4.30
4022 4381 2.914289 CCATGCTGACCCTCCTCC 59.086 66.667 0.00 0.00 0.00 4.30
4023 4382 2.191641 GCCATGCTGACCCTCCTC 59.808 66.667 0.00 0.00 0.00 3.71
4024 4383 3.790437 CGCCATGCTGACCCTCCT 61.790 66.667 0.00 0.00 0.00 3.69
4025 4384 2.044806 ATACGCCATGCTGACCCTCC 62.045 60.000 0.00 0.00 0.00 4.30
4026 4385 0.601311 GATACGCCATGCTGACCCTC 60.601 60.000 0.00 0.00 0.00 4.30
4027 4386 1.050988 AGATACGCCATGCTGACCCT 61.051 55.000 0.00 0.00 0.00 4.34
4028 4387 0.882042 CAGATACGCCATGCTGACCC 60.882 60.000 0.00 0.00 0.00 4.46
4029 4388 1.502163 GCAGATACGCCATGCTGACC 61.502 60.000 0.00 0.00 37.00 4.02
4030 4389 0.811219 TGCAGATACGCCATGCTGAC 60.811 55.000 0.00 0.00 40.62 3.51
4031 4390 0.531311 CTGCAGATACGCCATGCTGA 60.531 55.000 8.42 0.00 40.19 4.26
4032 4391 1.939597 CTGCAGATACGCCATGCTG 59.060 57.895 8.42 0.00 40.62 4.41
4148 4531 2.112815 GTTCGTGTATGCCCCTGCC 61.113 63.158 0.00 0.00 36.33 4.85
4224 4610 1.028868 GGCTGGATGCTGGAGAACAC 61.029 60.000 0.00 0.00 42.39 3.32
4268 4654 4.080751 TGGCCTGTTAGTCTTGTATTACCC 60.081 45.833 3.32 0.00 0.00 3.69
4279 4665 3.261137 ACCTCTTAAGTGGCCTGTTAGTC 59.739 47.826 20.93 0.00 32.19 2.59
4333 4719 4.461992 GTAGTGCTACGTTTGCTTGAAA 57.538 40.909 13.06 0.00 0.00 2.69
4372 4758 5.700832 TGCCAATGTATTTCGTAGATCCATC 59.299 40.000 0.00 0.00 35.04 3.51
4421 4807 4.657013 TCTGAGCATCTGTCCTATATCGT 58.343 43.478 0.00 0.00 35.36 3.73
4441 4827 3.005050 TGTCGTCGTCTTATGGTGTTTCT 59.995 43.478 0.00 0.00 0.00 2.52
4457 4843 2.417339 TCTGGCGCTATATTGTCGTC 57.583 50.000 7.64 0.47 0.00 4.20
4462 4848 3.246226 GCGGATATTCTGGCGCTATATTG 59.754 47.826 7.64 4.76 0.00 1.90
4463 4849 3.133003 AGCGGATATTCTGGCGCTATATT 59.867 43.478 7.64 0.00 34.19 1.28
4464 4850 2.695666 AGCGGATATTCTGGCGCTATAT 59.304 45.455 7.64 6.00 34.19 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.