Multiple sequence alignment - TraesCS1A01G168700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G168700 chr1A 100.000 3831 0 0 1 3831 301632797 301628967 0.000000e+00 7075
1 TraesCS1A01G168700 chr1D 96.606 1768 46 6 1128 2891 238061023 238059266 0.000000e+00 2920
2 TraesCS1A01G168700 chr1D 93.552 853 29 6 3004 3831 238059268 238058417 0.000000e+00 1247
3 TraesCS1A01G168700 chr1D 89.883 514 47 4 157 667 112226924 112227435 0.000000e+00 656
4 TraesCS1A01G168700 chr1D 89.844 512 49 3 157 667 200541801 200542310 0.000000e+00 654
5 TraesCS1A01G168700 chr1D 89.587 509 51 2 157 664 60060131 60060638 0.000000e+00 645
6 TraesCS1A01G168700 chr1D 84.478 335 46 3 668 999 238064813 238064482 3.690000e-85 326
7 TraesCS1A01G168700 chr1D 91.525 118 10 0 2890 3007 408872519 408872402 3.060000e-36 163
8 TraesCS1A01G168700 chr1D 89.916 119 12 0 2889 3007 401658584 401658466 1.840000e-33 154
9 TraesCS1A01G168700 chr1D 88.889 126 11 3 2889 3013 136673598 136673475 6.630000e-33 152
10 TraesCS1A01G168700 chr1D 89.916 119 11 1 2889 3007 305479193 305479310 6.630000e-33 152
11 TraesCS1A01G168700 chr1B 95.667 1777 47 14 1120 2891 336351081 336352832 0.000000e+00 2828
12 TraesCS1A01G168700 chr1B 91.155 814 20 7 3004 3792 336352830 336353616 0.000000e+00 1057
13 TraesCS1A01G168700 chr1B 91.597 119 10 0 2889 3007 630918440 630918558 8.510000e-37 165
14 TraesCS1A01G168700 chr1B 98.333 60 0 1 3773 3831 336353631 336353690 1.880000e-18 104
15 TraesCS1A01G168700 chr4D 90.838 513 44 3 157 667 358464215 358464726 0.000000e+00 684
16 TraesCS1A01G168700 chr4D 90.078 514 47 4 157 667 358431724 358432236 0.000000e+00 664
17 TraesCS1A01G168700 chr4D 94.872 117 6 0 2890 3006 400680566 400680682 2.350000e-42 183
18 TraesCS1A01G168700 chr4D 90.909 121 11 0 2889 3009 502404866 502404746 3.060000e-36 163
19 TraesCS1A01G168700 chr4D 90.598 117 11 0 2890 3006 5086931 5086815 5.120000e-34 156
20 TraesCS1A01G168700 chr4D 88.095 126 15 0 2882 3007 105237799 105237924 2.380000e-32 150
21 TraesCS1A01G168700 chr7D 90.039 512 49 2 157 667 550615718 550615208 0.000000e+00 662
22 TraesCS1A01G168700 chr7D 89.883 514 48 4 157 667 363958465 363957953 0.000000e+00 658
23 TraesCS1A01G168700 chr7D 94.167 120 7 0 2889 3008 4241701 4241820 2.350000e-42 183
24 TraesCS1A01G168700 chr5A 90.078 514 46 4 157 667 263992671 263992160 0.000000e+00 662
25 TraesCS1A01G168700 chr5A 98.182 165 3 0 1 165 662809202 662809366 4.840000e-74 289
26 TraesCS1A01G168700 chr5A 98.171 164 1 2 1 164 606780298 606780137 6.260000e-73 285
27 TraesCS1A01G168700 chr5A 92.623 122 8 1 2887 3007 561976283 561976162 1.410000e-39 174
28 TraesCS1A01G168700 chr3D 89.864 513 48 4 158 667 515103710 515103199 0.000000e+00 656
29 TraesCS1A01G168700 chr3D 92.241 116 8 1 2890 3004 549125220 549125105 3.060000e-36 163
30 TraesCS1A01G168700 chr3D 89.431 123 13 0 2885 3007 337959630 337959508 5.120000e-34 156
31 TraesCS1A01G168700 chr2D 82.808 349 47 10 1 347 359931908 359932245 2.240000e-77 300
32 TraesCS1A01G168700 chr2D 94.118 119 7 0 2889 3007 428669901 428670019 8.450000e-42 182
33 TraesCS1A01G168700 chr2D 92.308 117 9 0 2890 3006 619831850 619831734 2.370000e-37 167
34 TraesCS1A01G168700 chr7A 100.000 157 0 0 1 157 221548367 221548523 1.350000e-74 291
35 TraesCS1A01G168700 chr7A 98.171 164 3 0 1 164 21430029 21430192 1.740000e-73 287
36 TraesCS1A01G168700 chr7A 93.277 119 7 1 2890 3007 1416111 1416229 1.410000e-39 174
37 TraesCS1A01G168700 chr3A 100.000 156 0 0 1 156 423568845 423568690 4.840000e-74 289
38 TraesCS1A01G168700 chr6A 99.367 158 1 0 1 158 336518502 336518659 1.740000e-73 287
39 TraesCS1A01G168700 chr6B 97.561 164 4 0 1 164 369128725 369128562 8.100000e-72 281
40 TraesCS1A01G168700 chr6B 94.017 117 7 0 2890 3006 642978627 642978511 1.090000e-40 178
41 TraesCS1A01G168700 chr6B 87.591 137 16 1 2870 3006 495431256 495431391 1.420000e-34 158
42 TraesCS1A01G168700 chr2A 97.561 164 4 0 1 164 21395985 21396148 8.100000e-72 281
43 TraesCS1A01G168700 chr2A 93.220 118 7 1 2890 3006 718227779 718227896 5.090000e-39 172
44 TraesCS1A01G168700 chr4B 92.683 123 9 0 2890 3012 68101562 68101440 1.090000e-40 178
45 TraesCS1A01G168700 chr4B 91.597 119 8 2 2889 3006 171613806 171613923 3.060000e-36 163
46 TraesCS1A01G168700 chr7B 91.406 128 10 1 2889 3016 712100754 712100628 1.410000e-39 174
47 TraesCS1A01G168700 chr5D 92.437 119 8 1 2889 3007 547545545 547545662 6.580000e-38 169
48 TraesCS1A01G168700 chr5D 91.525 118 8 2 2890 3006 532749819 532749703 1.100000e-35 161
49 TraesCS1A01G168700 chr5B 92.437 119 8 1 2889 3007 691516944 691517061 6.580000e-38 169
50 TraesCS1A01G168700 chr6D 92.308 117 9 0 2890 3006 42480185 42480069 2.370000e-37 167
51 TraesCS1A01G168700 chr6D 90.756 119 10 1 2889 3007 39092683 39092800 1.420000e-34 158
52 TraesCS1A01G168700 chr6D 89.831 118 12 0 2890 3007 319246371 319246254 6.630000e-33 152
53 TraesCS1A01G168700 chr6D 89.744 117 12 0 2890 3006 27709998 27710114 2.380000e-32 150
54 TraesCS1A01G168700 chr6D 89.744 117 12 0 2890 3006 293082488 293082604 2.380000e-32 150
55 TraesCS1A01G168700 chrUn 90.598 117 11 0 2890 3006 22143591 22143707 5.120000e-34 156
56 TraesCS1A01G168700 chrUn 89.916 119 10 2 2889 3006 287061720 287061603 6.630000e-33 152
57 TraesCS1A01G168700 chrUn 89.744 117 12 0 2890 3006 97740067 97740183 2.380000e-32 150
58 TraesCS1A01G168700 chrUn 91.667 108 9 0 2899 3006 134234276 134234169 2.380000e-32 150
59 TraesCS1A01G168700 chrUn 88.983 118 11 2 2890 3006 9343599 9343715 1.110000e-30 145
60 TraesCS1A01G168700 chrUn 87.903 124 13 2 2884 3006 80550599 80550721 1.110000e-30 145
61 TraesCS1A01G168700 chrUn 88.136 118 14 0 2890 3007 284430973 284430856 1.430000e-29 141
62 TraesCS1A01G168700 chrUn 88.136 118 12 2 2890 3006 9472346 9472230 5.160000e-29 139
63 TraesCS1A01G168700 chrUn 87.288 118 12 3 2890 3006 86629267 86629382 8.640000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G168700 chr1A 301628967 301632797 3830 True 7075.000000 7075 100.000000 1 3831 1 chr1A.!!$R1 3830
1 TraesCS1A01G168700 chr1D 238058417 238064813 6396 True 1497.666667 2920 91.545333 668 3831 3 chr1D.!!$R4 3163
2 TraesCS1A01G168700 chr1D 112226924 112227435 511 False 656.000000 656 89.883000 157 667 1 chr1D.!!$F2 510
3 TraesCS1A01G168700 chr1D 200541801 200542310 509 False 654.000000 654 89.844000 157 667 1 chr1D.!!$F3 510
4 TraesCS1A01G168700 chr1D 60060131 60060638 507 False 645.000000 645 89.587000 157 664 1 chr1D.!!$F1 507
5 TraesCS1A01G168700 chr1B 336351081 336353690 2609 False 1329.666667 2828 95.051667 1120 3831 3 chr1B.!!$F2 2711
6 TraesCS1A01G168700 chr4D 358464215 358464726 511 False 684.000000 684 90.838000 157 667 1 chr4D.!!$F3 510
7 TraesCS1A01G168700 chr4D 358431724 358432236 512 False 664.000000 664 90.078000 157 667 1 chr4D.!!$F2 510
8 TraesCS1A01G168700 chr7D 550615208 550615718 510 True 662.000000 662 90.039000 157 667 1 chr7D.!!$R2 510
9 TraesCS1A01G168700 chr7D 363957953 363958465 512 True 658.000000 658 89.883000 157 667 1 chr7D.!!$R1 510
10 TraesCS1A01G168700 chr5A 263992160 263992671 511 True 662.000000 662 90.078000 157 667 1 chr5A.!!$R1 510
11 TraesCS1A01G168700 chr3D 515103199 515103710 511 True 656.000000 656 89.864000 158 667 1 chr3D.!!$R2 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.0 0.0 0.0 0.0 3.18 F
89 90 0.040646 TCTCCTTCCCCTCGTTGCTA 59.959 55.0 0.0 0.0 0.0 3.49 F
1126 1171 0.101399 TCCTCTCGCTGATTCTTCGC 59.899 55.0 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1153 0.102120 AGCGAAGAATCAGCGAGAGG 59.898 55.0 0.00 0.00 35.78 3.69 R
1990 5348 0.319083 CAAAATTCCCAGCAGCTGCA 59.681 50.0 38.24 19.65 45.16 4.41 R
2983 6341 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.192428 AGTACGACTCCATCAACCCC 58.808 55.000 0.00 0.00 0.00 4.95
20 21 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
21 22 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
22 23 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
23 24 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
24 25 0.323629 GACTCCATCAACCCCGTTCA 59.676 55.000 0.00 0.00 0.00 3.18
25 26 0.036306 ACTCCATCAACCCCGTTCAC 59.964 55.000 0.00 0.00 0.00 3.18
26 27 0.324943 CTCCATCAACCCCGTTCACT 59.675 55.000 0.00 0.00 0.00 3.41
27 28 0.768622 TCCATCAACCCCGTTCACTT 59.231 50.000 0.00 0.00 0.00 3.16
28 29 0.881118 CCATCAACCCCGTTCACTTG 59.119 55.000 0.00 0.00 0.00 3.16
29 30 1.544537 CCATCAACCCCGTTCACTTGA 60.545 52.381 0.00 0.00 0.00 3.02
30 31 2.226330 CATCAACCCCGTTCACTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
39 40 1.385999 GTTCACTTGAACGCTTTCGC 58.614 50.000 6.36 0.00 43.97 4.70
40 41 1.003866 GTTCACTTGAACGCTTTCGCT 60.004 47.619 6.36 0.00 43.97 4.93
41 42 1.295792 TCACTTGAACGCTTTCGCTT 58.704 45.000 0.00 0.00 39.84 4.68
42 43 2.475818 TCACTTGAACGCTTTCGCTTA 58.524 42.857 0.00 0.00 39.84 3.09
43 44 2.475111 TCACTTGAACGCTTTCGCTTAG 59.525 45.455 0.00 0.00 39.84 2.18
44 45 1.194772 ACTTGAACGCTTTCGCTTAGC 59.805 47.619 0.00 0.00 39.84 3.09
57 58 2.892784 GCTTAGCGATCTACAAGGGT 57.107 50.000 0.00 0.00 0.00 4.34
59 60 4.522722 GCTTAGCGATCTACAAGGGTAT 57.477 45.455 0.00 0.00 0.00 2.73
60 61 4.238514 GCTTAGCGATCTACAAGGGTATG 58.761 47.826 0.00 0.00 0.00 2.39
61 62 4.262079 GCTTAGCGATCTACAAGGGTATGT 60.262 45.833 0.00 0.00 37.32 2.29
62 63 5.048224 GCTTAGCGATCTACAAGGGTATGTA 60.048 44.000 0.00 0.00 34.75 2.29
71 72 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
72 73 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
73 74 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
74 75 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
75 76 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
76 77 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
77 78 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
78 79 4.262249 GGTATGTAGATGCACTCTCCTTCC 60.262 50.000 0.00 0.00 35.28 3.46
79 80 2.111384 TGTAGATGCACTCTCCTTCCC 58.889 52.381 0.00 0.00 35.28 3.97
80 81 1.414550 GTAGATGCACTCTCCTTCCCC 59.585 57.143 0.00 0.00 35.28 4.81
81 82 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
82 83 0.467804 GATGCACTCTCCTTCCCCTC 59.532 60.000 0.00 0.00 0.00 4.30
83 84 1.333636 ATGCACTCTCCTTCCCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
84 85 1.985116 GCACTCTCCTTCCCCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
85 86 1.545706 GCACTCTCCTTCCCCTCGTT 61.546 60.000 0.00 0.00 0.00 3.85
86 87 0.247736 CACTCTCCTTCCCCTCGTTG 59.752 60.000 0.00 0.00 0.00 4.10
87 88 1.219393 CTCTCCTTCCCCTCGTTGC 59.781 63.158 0.00 0.00 0.00 4.17
88 89 1.229209 TCTCCTTCCCCTCGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
89 90 0.040646 TCTCCTTCCCCTCGTTGCTA 59.959 55.000 0.00 0.00 0.00 3.49
90 91 0.461961 CTCCTTCCCCTCGTTGCTAG 59.538 60.000 0.00 0.00 0.00 3.42
91 92 0.040646 TCCTTCCCCTCGTTGCTAGA 59.959 55.000 0.00 0.00 0.00 2.43
92 93 1.123928 CCTTCCCCTCGTTGCTAGAT 58.876 55.000 0.00 0.00 0.00 1.98
93 94 1.486726 CCTTCCCCTCGTTGCTAGATT 59.513 52.381 0.00 0.00 0.00 2.40
94 95 2.698797 CCTTCCCCTCGTTGCTAGATTA 59.301 50.000 0.00 0.00 0.00 1.75
95 96 3.492829 CCTTCCCCTCGTTGCTAGATTAC 60.493 52.174 0.00 0.00 0.00 1.89
96 97 3.028094 TCCCCTCGTTGCTAGATTACT 57.972 47.619 0.00 0.00 0.00 2.24
97 98 2.957006 TCCCCTCGTTGCTAGATTACTC 59.043 50.000 0.00 0.00 0.00 2.59
98 99 2.036089 CCCCTCGTTGCTAGATTACTCC 59.964 54.545 0.00 0.00 0.00 3.85
99 100 2.693591 CCCTCGTTGCTAGATTACTCCA 59.306 50.000 0.00 0.00 0.00 3.86
100 101 3.322254 CCCTCGTTGCTAGATTACTCCAT 59.678 47.826 0.00 0.00 0.00 3.41
101 102 4.523173 CCCTCGTTGCTAGATTACTCCATA 59.477 45.833 0.00 0.00 0.00 2.74
102 103 5.336055 CCCTCGTTGCTAGATTACTCCATAG 60.336 48.000 0.00 0.00 0.00 2.23
103 104 5.473846 CCTCGTTGCTAGATTACTCCATAGA 59.526 44.000 0.00 0.00 0.00 1.98
104 105 6.151985 CCTCGTTGCTAGATTACTCCATAGAT 59.848 42.308 0.00 0.00 0.00 1.98
105 106 7.309499 CCTCGTTGCTAGATTACTCCATAGATT 60.309 40.741 0.00 0.00 0.00 2.40
106 107 7.371159 TCGTTGCTAGATTACTCCATAGATTG 58.629 38.462 0.00 0.00 0.00 2.67
107 108 7.230712 TCGTTGCTAGATTACTCCATAGATTGA 59.769 37.037 0.00 0.00 0.00 2.57
108 109 8.031864 CGTTGCTAGATTACTCCATAGATTGAT 58.968 37.037 0.00 0.00 0.00 2.57
109 110 9.364989 GTTGCTAGATTACTCCATAGATTGATC 57.635 37.037 0.00 0.00 0.00 2.92
110 111 8.891985 TGCTAGATTACTCCATAGATTGATCT 57.108 34.615 0.00 0.00 40.86 2.75
111 112 9.319060 TGCTAGATTACTCCATAGATTGATCTT 57.681 33.333 0.00 0.00 38.32 2.40
112 113 9.585099 GCTAGATTACTCCATAGATTGATCTTG 57.415 37.037 0.00 0.00 38.32 3.02
114 115 8.503428 AGATTACTCCATAGATTGATCTTGGT 57.497 34.615 15.48 6.45 38.32 3.67
115 116 8.373981 AGATTACTCCATAGATTGATCTTGGTG 58.626 37.037 15.48 15.28 38.32 4.17
116 117 7.675161 TTACTCCATAGATTGATCTTGGTGA 57.325 36.000 19.38 6.63 38.32 4.02
117 118 6.760440 ACTCCATAGATTGATCTTGGTGAT 57.240 37.500 19.38 0.00 38.32 3.06
118 119 6.531923 ACTCCATAGATTGATCTTGGTGATG 58.468 40.000 19.38 10.22 38.32 3.07
119 120 5.311265 TCCATAGATTGATCTTGGTGATGC 58.689 41.667 15.48 0.00 38.32 3.91
120 121 4.153655 CCATAGATTGATCTTGGTGATGCG 59.846 45.833 0.00 0.00 38.32 4.73
121 122 3.272574 AGATTGATCTTGGTGATGCGT 57.727 42.857 0.00 0.00 35.14 5.24
122 123 4.406648 AGATTGATCTTGGTGATGCGTA 57.593 40.909 0.00 0.00 35.14 4.42
123 124 4.375272 AGATTGATCTTGGTGATGCGTAG 58.625 43.478 0.00 0.00 35.14 3.51
124 125 3.885724 TTGATCTTGGTGATGCGTAGA 57.114 42.857 0.00 0.00 35.14 2.59
125 126 3.885724 TGATCTTGGTGATGCGTAGAA 57.114 42.857 0.00 0.00 35.14 2.10
126 127 4.200838 TGATCTTGGTGATGCGTAGAAA 57.799 40.909 0.00 0.00 35.14 2.52
127 128 4.574892 TGATCTTGGTGATGCGTAGAAAA 58.425 39.130 0.00 0.00 35.14 2.29
128 129 5.185454 TGATCTTGGTGATGCGTAGAAAAT 58.815 37.500 0.00 0.00 35.14 1.82
129 130 5.647658 TGATCTTGGTGATGCGTAGAAAATT 59.352 36.000 0.00 0.00 35.14 1.82
130 131 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
131 132 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
132 133 6.148948 TCTTGGTGATGCGTAGAAAATTTTG 58.851 36.000 8.47 0.00 0.00 2.44
133 134 5.697473 TGGTGATGCGTAGAAAATTTTGA 57.303 34.783 8.47 0.00 0.00 2.69
134 135 6.078202 TGGTGATGCGTAGAAAATTTTGAA 57.922 33.333 8.47 0.00 0.00 2.69
135 136 6.686630 TGGTGATGCGTAGAAAATTTTGAAT 58.313 32.000 8.47 0.00 0.00 2.57
136 137 7.151308 TGGTGATGCGTAGAAAATTTTGAATT 58.849 30.769 8.47 0.00 0.00 2.17
137 138 7.655328 TGGTGATGCGTAGAAAATTTTGAATTT 59.345 29.630 8.47 0.00 0.00 1.82
138 139 8.162245 GGTGATGCGTAGAAAATTTTGAATTTC 58.838 33.333 8.47 0.00 36.11 2.17
139 140 8.915654 GTGATGCGTAGAAAATTTTGAATTTCT 58.084 29.630 8.47 0.48 45.29 2.52
140 141 8.914654 TGATGCGTAGAAAATTTTGAATTTCTG 58.085 29.630 8.47 0.00 43.67 3.02
141 142 7.104326 TGCGTAGAAAATTTTGAATTTCTGC 57.896 32.000 8.47 8.21 43.67 4.26
142 143 6.922957 TGCGTAGAAAATTTTGAATTTCTGCT 59.077 30.769 8.47 0.00 43.67 4.24
143 144 8.079203 TGCGTAGAAAATTTTGAATTTCTGCTA 58.921 29.630 8.47 0.00 43.67 3.49
144 145 8.365938 GCGTAGAAAATTTTGAATTTCTGCTAC 58.634 33.333 8.47 8.90 43.67 3.58
145 146 8.567221 CGTAGAAAATTTTGAATTTCTGCTACG 58.433 33.333 22.91 22.91 43.67 3.51
146 147 9.394477 GTAGAAAATTTTGAATTTCTGCTACGT 57.606 29.630 8.47 0.00 43.67 3.57
147 148 8.871686 AGAAAATTTTGAATTTCTGCTACGTT 57.128 26.923 8.47 0.00 42.62 3.99
148 149 8.968242 AGAAAATTTTGAATTTCTGCTACGTTC 58.032 29.630 8.47 0.00 42.62 3.95
149 150 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
150 151 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
151 152 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
152 153 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
153 154 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
154 155 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
155 156 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
190 191 2.607187 GTCTACTTGACATGGACGTGG 58.393 52.381 0.00 0.00 44.73 4.94
207 208 5.337250 GGACGTGGTGCCTATATTCATGATA 60.337 44.000 0.00 0.00 0.00 2.15
247 248 7.853929 TCGTTATAATTTTGCGCTTTTCTATCC 59.146 33.333 9.73 0.00 0.00 2.59
279 280 3.316868 CAGTAATTTGTTCACCCACCGTT 59.683 43.478 0.00 0.00 0.00 4.44
284 286 5.632244 ATTTGTTCACCCACCGTTATAAC 57.368 39.130 5.47 5.47 0.00 1.89
324 326 4.290942 CCTCTAGTGAAACCTATGGTCCT 58.709 47.826 0.00 0.00 37.80 3.85
330 332 1.558294 GAAACCTATGGTCCTCGGGTT 59.442 52.381 7.00 7.00 41.35 4.11
453 460 5.730296 ACCGTTTATCCATCTCTATCAGG 57.270 43.478 0.00 0.00 0.00 3.86
455 462 6.312529 ACCGTTTATCCATCTCTATCAGGTA 58.687 40.000 0.00 0.00 0.00 3.08
471 478 8.367911 TCTATCAGGTATCACTTTGCGAATAAT 58.632 33.333 0.00 0.00 0.00 1.28
472 479 7.807977 ATCAGGTATCACTTTGCGAATAATT 57.192 32.000 0.00 0.00 0.00 1.40
475 482 7.120579 TCAGGTATCACTTTGCGAATAATTGTT 59.879 33.333 0.00 0.00 0.00 2.83
479 486 9.982291 GTATCACTTTGCGAATAATTGTTAAGA 57.018 29.630 3.14 0.00 0.00 2.10
496 503 6.843752 TGTTAAGAGATTGACAACCCCTTTA 58.156 36.000 0.00 0.00 0.00 1.85
505 512 0.179174 CAACCCCTTTATCGCGTTGC 60.179 55.000 5.77 0.00 0.00 4.17
509 516 0.802494 CCCTTTATCGCGTTGCTTGT 59.198 50.000 5.77 0.00 0.00 3.16
573 581 5.416326 GCGTAGTCTCCTACTGGATTGATAT 59.584 44.000 0.00 0.00 42.29 1.63
628 636 2.041701 ACTTTGCTGCATCACCCTTTT 58.958 42.857 1.84 0.00 0.00 2.27
636 644 4.015084 CTGCATCACCCTTTTCTCTTCAT 58.985 43.478 0.00 0.00 0.00 2.57
637 645 5.178096 TGCATCACCCTTTTCTCTTCATA 57.822 39.130 0.00 0.00 0.00 2.15
638 646 5.569355 TGCATCACCCTTTTCTCTTCATAA 58.431 37.500 0.00 0.00 0.00 1.90
649 658 8.413229 CCTTTTCTCTTCATAAGAAAACCAACA 58.587 33.333 6.88 0.00 43.96 3.33
659 668 4.799564 AGAAAACCAACACAAGCTCAAA 57.200 36.364 0.00 0.00 0.00 2.69
682 691 2.029666 GCGGCAGCGGATATCAGT 59.970 61.111 3.69 0.00 0.00 3.41
699 708 2.751436 TGGCGCTTTGAGGATGCC 60.751 61.111 7.64 0.00 45.91 4.40
700 709 3.880846 GGCGCTTTGAGGATGCCG 61.881 66.667 7.64 0.00 35.77 5.69
703 712 2.751436 GCTTTGAGGATGCCGCCA 60.751 61.111 0.00 0.00 0.00 5.69
711 720 2.903855 GATGCCGCCATCACCCAG 60.904 66.667 0.67 0.00 45.75 4.45
717 726 2.679716 GCCATCACCCAGGAGCTT 59.320 61.111 0.00 0.00 0.00 3.74
718 727 1.000396 GCCATCACCCAGGAGCTTT 60.000 57.895 0.00 0.00 0.00 3.51
777 786 1.118965 TCGAGGAAGTGGCCACAGAA 61.119 55.000 36.39 12.29 0.00 3.02
789 798 4.762251 GTGGCCACAGAAGAGAAGTTAAAT 59.238 41.667 31.23 0.00 0.00 1.40
792 801 5.649831 GGCCACAGAAGAGAAGTTAAATGAT 59.350 40.000 0.00 0.00 0.00 2.45
793 802 6.404074 GGCCACAGAAGAGAAGTTAAATGATG 60.404 42.308 0.00 0.00 0.00 3.07
808 817 0.543277 TGATGTGATGGCTCTGGGAC 59.457 55.000 0.00 0.00 0.00 4.46
809 818 0.543277 GATGTGATGGCTCTGGGACA 59.457 55.000 0.00 0.00 37.36 4.02
820 829 4.051167 TGGGACAGGGCATGGCAG 62.051 66.667 22.06 14.97 39.54 4.85
830 839 3.762247 CATGGCAGTTTGGGGCGG 61.762 66.667 0.00 0.00 0.00 6.13
867 876 2.519780 GGGCACAACGGTTTGGGA 60.520 61.111 0.00 0.00 38.57 4.37
874 883 1.304134 AACGGTTTGGGATGGGAGC 60.304 57.895 0.00 0.00 0.00 4.70
878 887 1.002624 GTTTGGGATGGGAGCGACA 60.003 57.895 0.00 0.00 0.00 4.35
902 911 4.404098 GGACGGGGCATGACGGTT 62.404 66.667 0.00 0.00 0.00 4.44
903 912 2.359478 GACGGGGCATGACGGTTT 60.359 61.111 0.00 0.00 0.00 3.27
932 941 2.413765 GACGGCTCTCGGATGGAC 59.586 66.667 0.00 0.00 44.45 4.02
935 944 2.818132 GGCTCTCGGATGGACAGG 59.182 66.667 0.00 0.00 0.00 4.00
985 994 4.060038 CGGGGCGTGACGGTAGTT 62.060 66.667 7.25 0.00 0.00 2.24
999 1008 0.875059 GTAGTTTGTGCTCACTGGGC 59.125 55.000 0.00 0.00 0.00 5.36
1000 1009 0.472044 TAGTTTGTGCTCACTGGGCA 59.528 50.000 0.00 0.00 37.36 5.36
1001 1010 0.178981 AGTTTGTGCTCACTGGGCAT 60.179 50.000 6.92 0.00 41.86 4.40
1005 1050 1.002868 GTGCTCACTGGGCATGTCT 60.003 57.895 6.92 0.00 41.86 3.41
1013 1058 2.171237 CACTGGGCATGTCTTATCCTCA 59.829 50.000 0.00 0.00 0.00 3.86
1014 1059 2.846206 ACTGGGCATGTCTTATCCTCAA 59.154 45.455 0.00 0.00 0.00 3.02
1021 1066 6.268566 GGCATGTCTTATCCTCAAAATGTTC 58.731 40.000 0.00 0.00 0.00 3.18
1037 1082 0.103937 GTTCGATCTGGCTCCTCCTG 59.896 60.000 0.00 0.00 35.26 3.86
1062 1107 1.606350 GAACTTCCGCGCGATATCGG 61.606 60.000 34.63 14.24 46.52 4.18
1077 1122 5.006746 GCGATATCGGGCTCCTATATTTTTG 59.993 44.000 25.51 0.00 40.23 2.44
1083 1128 8.706322 ATCGGGCTCCTATATTTTTGTATTTT 57.294 30.769 0.00 0.00 0.00 1.82
1108 1153 7.320399 TCAAAACAGTCCTTTTTCCTTTTCTC 58.680 34.615 0.00 0.00 0.00 2.87
1114 1159 4.452795 GTCCTTTTTCCTTTTCTCCTCTCG 59.547 45.833 0.00 0.00 0.00 4.04
1119 1164 2.461695 TCCTTTTCTCCTCTCGCTGAT 58.538 47.619 0.00 0.00 0.00 2.90
1121 1166 3.118956 TCCTTTTCTCCTCTCGCTGATTC 60.119 47.826 0.00 0.00 0.00 2.52
1122 1167 3.118811 CCTTTTCTCCTCTCGCTGATTCT 60.119 47.826 0.00 0.00 0.00 2.40
1123 1168 4.502962 CTTTTCTCCTCTCGCTGATTCTT 58.497 43.478 0.00 0.00 0.00 2.52
1124 1169 3.791973 TTCTCCTCTCGCTGATTCTTC 57.208 47.619 0.00 0.00 0.00 2.87
1125 1170 1.673400 TCTCCTCTCGCTGATTCTTCG 59.327 52.381 0.00 0.00 0.00 3.79
1126 1171 0.101399 TCCTCTCGCTGATTCTTCGC 59.899 55.000 0.00 0.00 0.00 4.70
1127 1172 0.102120 CCTCTCGCTGATTCTTCGCT 59.898 55.000 0.00 0.00 0.00 4.93
1128 1173 1.476074 CTCTCGCTGATTCTTCGCTC 58.524 55.000 0.00 0.00 0.00 5.03
1129 1174 1.065401 CTCTCGCTGATTCTTCGCTCT 59.935 52.381 0.00 0.00 0.00 4.09
1130 1175 1.064803 TCTCGCTGATTCTTCGCTCTC 59.935 52.381 0.00 0.00 0.00 3.20
1216 4565 0.614697 CATTCCCAAACCCTCACCCC 60.615 60.000 0.00 0.00 0.00 4.95
1217 4566 1.811025 ATTCCCAAACCCTCACCCCC 61.811 60.000 0.00 0.00 0.00 5.40
1340 4698 3.764466 CGAGACCTCCGCAGCCTT 61.764 66.667 0.00 0.00 0.00 4.35
1408 4766 1.985662 ACTGCCGTATGGAACCCGA 60.986 57.895 4.73 0.00 37.49 5.14
1409 4767 1.219664 CTGCCGTATGGAACCCGAA 59.780 57.895 4.73 0.00 37.49 4.30
1601 4959 2.146342 CCACTCGCTCATTCTTTGTGT 58.854 47.619 0.00 0.00 0.00 3.72
1727 5085 1.000506 GTGCCGTGAACTACTGGAAGA 59.999 52.381 0.00 0.00 37.43 2.87
1750 5108 3.664107 CTTGTCGATCCAGGTGAAGAAA 58.336 45.455 0.00 0.00 0.00 2.52
1916 5274 1.451504 CAGGTTGAGAGGGTGCACA 59.548 57.895 20.43 0.00 0.00 4.57
1990 5348 1.967319 ACATTCTGTTGACGGTGCTT 58.033 45.000 0.00 0.00 0.00 3.91
2224 5582 1.951209 TGGGAATGAGTAGTGAGGCA 58.049 50.000 0.00 0.00 0.00 4.75
2321 5679 7.040892 GGCTGCTTAAGATGAATGACATTGATA 60.041 37.037 6.67 0.00 39.56 2.15
2452 5810 1.485895 GAAGCTCTCCTGGATGAAGCT 59.514 52.381 17.72 17.72 0.00 3.74
2666 6024 2.586245 CCGAGGAGATGGCAAGCA 59.414 61.111 0.00 0.00 0.00 3.91
2851 6209 3.446873 AGATATCCGCAGCTTCCTATCAG 59.553 47.826 0.00 0.00 0.00 2.90
2854 6212 1.957177 TCCGCAGCTTCCTATCAGTAG 59.043 52.381 0.00 0.00 0.00 2.57
2891 6249 5.652994 TGTTTATTTTCCATGGCAGGTAC 57.347 39.130 6.96 0.00 0.00 3.34
2892 6250 5.329399 TGTTTATTTTCCATGGCAGGTACT 58.671 37.500 6.96 0.00 43.88 2.73
2893 6251 5.417580 TGTTTATTTTCCATGGCAGGTACTC 59.582 40.000 6.96 0.00 34.60 2.59
2894 6252 2.507407 TTTTCCATGGCAGGTACTCC 57.493 50.000 6.96 0.00 34.60 3.85
2895 6253 0.623723 TTTCCATGGCAGGTACTCCC 59.376 55.000 6.96 0.00 34.60 4.30
2897 6255 0.691078 TCCATGGCAGGTACTCCCTC 60.691 60.000 6.96 0.00 43.86 4.30
2898 6256 1.700042 CCATGGCAGGTACTCCCTCC 61.700 65.000 0.00 0.00 43.86 4.30
2899 6257 1.762460 ATGGCAGGTACTCCCTCCG 60.762 63.158 0.00 0.00 43.86 4.63
2900 6258 2.363925 GGCAGGTACTCCCTCCGT 60.364 66.667 0.00 0.00 43.86 4.69
2901 6259 2.424733 GGCAGGTACTCCCTCCGTC 61.425 68.421 0.00 0.00 43.86 4.79
2902 6260 1.380112 GCAGGTACTCCCTCCGTCT 60.380 63.158 0.00 0.00 43.86 4.18
2903 6261 1.668101 GCAGGTACTCCCTCCGTCTG 61.668 65.000 0.00 0.00 43.86 3.51
2904 6262 1.038130 CAGGTACTCCCTCCGTCTGG 61.038 65.000 0.00 0.00 43.86 3.86
2905 6263 1.212934 AGGTACTCCCTCCGTCTGGA 61.213 60.000 0.00 0.00 40.71 3.86
2906 6264 0.324091 GGTACTCCCTCCGTCTGGAA 60.324 60.000 0.00 0.00 45.87 3.53
2907 6265 1.553706 GTACTCCCTCCGTCTGGAAA 58.446 55.000 0.00 0.00 45.87 3.13
2908 6266 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
2909 6267 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
2910 6268 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
2911 6269 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
2912 6270 3.053095 ACTCCCTCCGTCTGGAAATACTA 60.053 47.826 0.00 0.00 45.87 1.82
2913 6271 3.563223 TCCCTCCGTCTGGAAATACTAG 58.437 50.000 0.00 0.00 45.87 2.57
2914 6272 3.053095 TCCCTCCGTCTGGAAATACTAGT 60.053 47.826 0.00 0.00 45.87 2.57
2915 6273 3.318557 CCCTCCGTCTGGAAATACTAGTC 59.681 52.174 0.00 0.00 45.87 2.59
2916 6274 3.003482 CCTCCGTCTGGAAATACTAGTCG 59.997 52.174 0.00 0.00 45.87 4.18
2917 6275 2.357009 TCCGTCTGGAAATACTAGTCGC 59.643 50.000 0.00 0.00 42.85 5.19
2918 6276 2.098607 CCGTCTGGAAATACTAGTCGCA 59.901 50.000 0.00 0.00 37.33 5.10
2919 6277 3.243434 CCGTCTGGAAATACTAGTCGCAT 60.243 47.826 0.00 0.00 37.33 4.73
2920 6278 4.023450 CCGTCTGGAAATACTAGTCGCATA 60.023 45.833 0.00 0.00 37.33 3.14
2921 6279 5.506815 CCGTCTGGAAATACTAGTCGCATAA 60.507 44.000 0.00 0.00 37.33 1.90
2922 6280 5.975344 CGTCTGGAAATACTAGTCGCATAAA 59.025 40.000 0.00 0.00 33.35 1.40
2923 6281 6.641314 CGTCTGGAAATACTAGTCGCATAAAT 59.359 38.462 0.00 0.00 33.35 1.40
2924 6282 7.358435 CGTCTGGAAATACTAGTCGCATAAATG 60.358 40.741 0.00 0.00 33.35 2.32
2925 6283 6.929049 TCTGGAAATACTAGTCGCATAAATGG 59.071 38.462 0.00 0.00 0.00 3.16
2926 6284 6.822442 TGGAAATACTAGTCGCATAAATGGA 58.178 36.000 0.00 0.00 0.00 3.41
2927 6285 7.450074 TGGAAATACTAGTCGCATAAATGGAT 58.550 34.615 0.00 0.00 0.00 3.41
2928 6286 7.936847 TGGAAATACTAGTCGCATAAATGGATT 59.063 33.333 0.00 0.00 0.00 3.01
2929 6287 9.431887 GGAAATACTAGTCGCATAAATGGATTA 57.568 33.333 0.00 0.00 0.00 1.75
2935 6293 8.567948 ACTAGTCGCATAAATGGATTAAAATGG 58.432 33.333 0.00 0.00 0.00 3.16
2936 6294 7.581213 AGTCGCATAAATGGATTAAAATGGA 57.419 32.000 0.00 0.00 0.00 3.41
2937 6295 8.181904 AGTCGCATAAATGGATTAAAATGGAT 57.818 30.769 0.00 0.00 0.00 3.41
2938 6296 8.084073 AGTCGCATAAATGGATTAAAATGGATG 58.916 33.333 0.00 0.00 0.00 3.51
2939 6297 7.867403 GTCGCATAAATGGATTAAAATGGATGT 59.133 33.333 0.00 0.00 0.00 3.06
2940 6298 9.072375 TCGCATAAATGGATTAAAATGGATGTA 57.928 29.630 0.00 0.00 0.00 2.29
2941 6299 9.859427 CGCATAAATGGATTAAAATGGATGTAT 57.141 29.630 0.00 0.00 0.00 2.29
2982 6340 3.466836 GGATACATCCATTTCGCTGACA 58.533 45.455 3.26 0.00 46.38 3.58
2983 6341 3.876914 GGATACATCCATTTCGCTGACAA 59.123 43.478 3.26 0.00 46.38 3.18
2984 6342 4.024556 GGATACATCCATTTCGCTGACAAG 60.025 45.833 3.26 0.00 46.38 3.16
2985 6343 2.783135 ACATCCATTTCGCTGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2986 6344 3.937814 ACATCCATTTCGCTGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2987 6345 4.517285 ACATCCATTTCGCTGACAAGTAT 58.483 39.130 0.00 0.00 0.00 2.12
2988 6346 4.943705 ACATCCATTTCGCTGACAAGTATT 59.056 37.500 0.00 0.00 0.00 1.89
2989 6347 5.415701 ACATCCATTTCGCTGACAAGTATTT 59.584 36.000 0.00 0.00 0.00 1.40
2990 6348 5.545658 TCCATTTCGCTGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
2991 6349 4.394920 TCCATTTCGCTGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
2992 6350 4.334443 CATTTCGCTGACAAGTATTTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2993 6351 2.004583 TCGCTGACAAGTATTTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
2994 6352 1.546923 TCGCTGACAAGTATTTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
2995 6353 1.659098 CGCTGACAAGTATTTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
2996 6354 1.659098 GCTGACAAGTATTTCCGGACG 59.341 52.381 1.83 0.00 0.00 4.79
2997 6355 2.268298 CTGACAAGTATTTCCGGACGG 58.732 52.381 1.83 3.96 0.00 4.79
2998 6356 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2999 6357 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3000 6358 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3001 6359 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3002 6360 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3003 6361 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3004 6362 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3005 6363 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3115 6477 3.570212 GTCACAGGGCAGTGGGGT 61.570 66.667 9.07 0.00 39.93 4.95
3237 6599 9.042008 GTAGTGTCACAAATCAGTCTTTTAAGA 57.958 33.333 5.62 0.00 0.00 2.10
3238 6600 8.147642 AGTGTCACAAATCAGTCTTTTAAGAG 57.852 34.615 5.62 0.00 35.32 2.85
3271 6636 6.767902 GCTCCATCTACCACATCAAATTCTTA 59.232 38.462 0.00 0.00 0.00 2.10
3346 6711 1.823899 CCAAAGTCGCTATGGGGGC 60.824 63.158 0.00 0.00 0.00 5.80
3373 6738 2.102084 TGACATGAGCTGATAGCCTGAC 59.898 50.000 0.00 0.00 43.77 3.51
3404 6769 9.626045 CCTTGTGTAATAAACCAGAGATTTTTC 57.374 33.333 0.00 0.00 0.00 2.29
3459 6824 4.202336 ACTCTGAAGAGATGTATGCCCATG 60.202 45.833 14.20 0.00 44.74 3.66
3504 6869 7.925483 TGAAGTACATTGCACATTTAGCTTTTT 59.075 29.630 0.00 0.00 0.00 1.94
3569 6938 6.820152 GTGCTCATATGATGCCTACAATATGA 59.180 38.462 18.46 0.00 32.27 2.15
3618 7005 3.515104 TCCCTCAAATGGCCTGAATTTTC 59.485 43.478 3.32 0.00 0.00 2.29
3670 7057 1.375396 CATCAAACGAGCCGGGTGA 60.375 57.895 12.94 0.83 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
1 2 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
2 3 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
3 4 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
5 6 0.323629 TGAACGGGGTTGATGGAGTC 59.676 55.000 0.00 0.00 0.00 3.36
6 7 0.036306 GTGAACGGGGTTGATGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
7 8 0.324943 AGTGAACGGGGTTGATGGAG 59.675 55.000 0.00 0.00 0.00 3.86
8 9 0.768622 AAGTGAACGGGGTTGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
9 10 0.881118 CAAGTGAACGGGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
10 11 1.890876 TCAAGTGAACGGGGTTGATG 58.109 50.000 0.00 0.00 0.00 3.07
11 12 2.227194 GTTCAAGTGAACGGGGTTGAT 58.773 47.619 8.34 0.00 43.97 2.57
12 13 1.670791 GTTCAAGTGAACGGGGTTGA 58.329 50.000 8.34 0.00 43.97 3.18
38 39 2.892784 ACCCTTGTAGATCGCTAAGC 57.107 50.000 0.00 0.00 0.00 3.09
39 40 5.455056 ACATACCCTTGTAGATCGCTAAG 57.545 43.478 0.00 0.00 0.00 2.18
48 49 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
49 50 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
50 51 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
51 52 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
52 53 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
53 54 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
54 55 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
55 56 4.262249 GGAAGGAGAGTGCATCTACATACC 60.262 50.000 9.98 6.83 42.01 2.73
56 57 4.262249 GGGAAGGAGAGTGCATCTACATAC 60.262 50.000 9.98 0.82 42.01 2.39
57 58 3.898123 GGGAAGGAGAGTGCATCTACATA 59.102 47.826 9.98 0.00 42.01 2.29
58 59 2.703007 GGGAAGGAGAGTGCATCTACAT 59.297 50.000 9.98 0.00 42.01 2.29
59 60 2.111384 GGGAAGGAGAGTGCATCTACA 58.889 52.381 9.98 0.00 42.01 2.74
60 61 1.414550 GGGGAAGGAGAGTGCATCTAC 59.585 57.143 0.00 0.00 38.84 2.59
61 62 1.292242 AGGGGAAGGAGAGTGCATCTA 59.708 52.381 0.00 0.00 38.84 1.98
62 63 0.043940 AGGGGAAGGAGAGTGCATCT 59.956 55.000 0.00 0.00 42.61 2.90
63 64 0.467804 GAGGGGAAGGAGAGTGCATC 59.532 60.000 0.00 0.00 0.00 3.91
64 65 1.333636 CGAGGGGAAGGAGAGTGCAT 61.334 60.000 0.00 0.00 0.00 3.96
65 66 1.984570 CGAGGGGAAGGAGAGTGCA 60.985 63.158 0.00 0.00 0.00 4.57
66 67 1.545706 AACGAGGGGAAGGAGAGTGC 61.546 60.000 0.00 0.00 0.00 4.40
67 68 0.247736 CAACGAGGGGAAGGAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
68 69 1.545706 GCAACGAGGGGAAGGAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
69 70 1.219393 GCAACGAGGGGAAGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
70 71 0.040646 TAGCAACGAGGGGAAGGAGA 59.959 55.000 0.00 0.00 0.00 3.71
71 72 0.461961 CTAGCAACGAGGGGAAGGAG 59.538 60.000 0.00 0.00 0.00 3.69
72 73 0.040646 TCTAGCAACGAGGGGAAGGA 59.959 55.000 0.00 0.00 0.00 3.36
73 74 1.123928 ATCTAGCAACGAGGGGAAGG 58.876 55.000 0.00 0.00 0.00 3.46
74 75 2.990066 AATCTAGCAACGAGGGGAAG 57.010 50.000 0.00 0.00 0.00 3.46
75 76 3.371965 AGTAATCTAGCAACGAGGGGAA 58.628 45.455 0.00 0.00 0.00 3.97
76 77 2.957006 GAGTAATCTAGCAACGAGGGGA 59.043 50.000 0.00 0.00 0.00 4.81
77 78 2.036089 GGAGTAATCTAGCAACGAGGGG 59.964 54.545 0.00 0.00 0.00 4.79
78 79 2.693591 TGGAGTAATCTAGCAACGAGGG 59.306 50.000 0.00 0.00 0.00 4.30
79 80 4.592485 ATGGAGTAATCTAGCAACGAGG 57.408 45.455 0.00 0.00 0.00 4.63
80 81 6.561737 TCTATGGAGTAATCTAGCAACGAG 57.438 41.667 0.00 0.00 0.00 4.18
81 82 7.230712 TCAATCTATGGAGTAATCTAGCAACGA 59.769 37.037 0.00 0.00 0.00 3.85
82 83 7.371159 TCAATCTATGGAGTAATCTAGCAACG 58.629 38.462 0.00 0.00 0.00 4.10
83 84 9.364989 GATCAATCTATGGAGTAATCTAGCAAC 57.635 37.037 0.00 0.00 0.00 4.17
84 85 9.319060 AGATCAATCTATGGAGTAATCTAGCAA 57.681 33.333 0.00 0.00 34.85 3.91
85 86 8.891985 AGATCAATCTATGGAGTAATCTAGCA 57.108 34.615 0.00 0.00 34.85 3.49
86 87 9.585099 CAAGATCAATCTATGGAGTAATCTAGC 57.415 37.037 0.00 0.00 35.76 3.42
88 89 9.607333 ACCAAGATCAATCTATGGAGTAATCTA 57.393 33.333 19.34 0.00 37.92 1.98
89 90 8.373981 CACCAAGATCAATCTATGGAGTAATCT 58.626 37.037 19.34 0.00 37.92 2.40
90 91 8.370940 TCACCAAGATCAATCTATGGAGTAATC 58.629 37.037 19.34 0.00 37.92 1.75
91 92 8.267620 TCACCAAGATCAATCTATGGAGTAAT 57.732 34.615 19.34 3.63 37.92 1.89
92 93 7.675161 TCACCAAGATCAATCTATGGAGTAA 57.325 36.000 19.34 6.75 37.92 2.24
93 94 7.674120 CATCACCAAGATCAATCTATGGAGTA 58.326 38.462 19.34 10.06 37.92 2.59
94 95 6.531923 CATCACCAAGATCAATCTATGGAGT 58.468 40.000 19.34 8.56 37.92 3.85
95 96 5.411977 GCATCACCAAGATCAATCTATGGAG 59.588 44.000 19.34 14.57 37.92 3.86
96 97 5.311265 GCATCACCAAGATCAATCTATGGA 58.689 41.667 19.34 6.96 37.92 3.41
97 98 4.153655 CGCATCACCAAGATCAATCTATGG 59.846 45.833 14.46 14.46 39.18 2.74
98 99 4.753610 ACGCATCACCAAGATCAATCTATG 59.246 41.667 0.00 0.00 35.76 2.23
99 100 4.965814 ACGCATCACCAAGATCAATCTAT 58.034 39.130 0.00 0.00 35.76 1.98
100 101 4.406648 ACGCATCACCAAGATCAATCTA 57.593 40.909 0.00 0.00 35.76 1.98
101 102 3.272574 ACGCATCACCAAGATCAATCT 57.727 42.857 0.00 0.00 39.22 2.40
102 103 4.371786 TCTACGCATCACCAAGATCAATC 58.628 43.478 0.00 0.00 33.72 2.67
103 104 4.406648 TCTACGCATCACCAAGATCAAT 57.593 40.909 0.00 0.00 33.72 2.57
104 105 3.885724 TCTACGCATCACCAAGATCAA 57.114 42.857 0.00 0.00 33.72 2.57
105 106 3.885724 TTCTACGCATCACCAAGATCA 57.114 42.857 0.00 0.00 33.72 2.92
106 107 5.741388 ATTTTCTACGCATCACCAAGATC 57.259 39.130 0.00 0.00 33.72 2.75
107 108 6.515272 AAATTTTCTACGCATCACCAAGAT 57.485 33.333 0.00 0.00 37.48 2.40
108 109 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
109 110 6.148948 TCAAAATTTTCTACGCATCACCAAG 58.851 36.000 0.00 0.00 0.00 3.61
110 111 6.078202 TCAAAATTTTCTACGCATCACCAA 57.922 33.333 0.00 0.00 0.00 3.67
111 112 5.697473 TCAAAATTTTCTACGCATCACCA 57.303 34.783 0.00 0.00 0.00 4.17
112 113 7.581011 AATTCAAAATTTTCTACGCATCACC 57.419 32.000 0.00 0.00 0.00 4.02
113 114 8.915654 AGAAATTCAAAATTTTCTACGCATCAC 58.084 29.630 0.00 0.00 39.70 3.06
114 115 8.914654 CAGAAATTCAAAATTTTCTACGCATCA 58.085 29.630 0.00 0.00 39.53 3.07
115 116 7.894753 GCAGAAATTCAAAATTTTCTACGCATC 59.105 33.333 0.00 0.00 39.53 3.91
116 117 7.599998 AGCAGAAATTCAAAATTTTCTACGCAT 59.400 29.630 0.00 0.00 39.53 4.73
117 118 6.922957 AGCAGAAATTCAAAATTTTCTACGCA 59.077 30.769 0.00 0.00 39.53 5.24
118 119 7.338440 AGCAGAAATTCAAAATTTTCTACGC 57.662 32.000 0.00 0.00 39.53 4.42
119 120 8.567221 CGTAGCAGAAATTCAAAATTTTCTACG 58.433 33.333 19.51 19.51 39.53 3.51
120 121 9.394477 ACGTAGCAGAAATTCAAAATTTTCTAC 57.606 29.630 0.00 5.68 39.53 2.59
121 122 9.959749 AACGTAGCAGAAATTCAAAATTTTCTA 57.040 25.926 0.00 0.00 39.53 2.10
122 123 8.871686 AACGTAGCAGAAATTCAAAATTTTCT 57.128 26.923 0.00 0.00 41.61 2.52
123 124 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
124 125 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
125 126 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
126 127 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
127 128 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
128 129 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
129 130 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
130 131 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
131 132 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
132 133 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
133 134 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
134 135 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
135 136 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
136 137 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
137 138 0.320374 CTGTTGGGGAACGTAGCAGA 59.680 55.000 0.00 0.00 31.30 4.26
138 139 1.298859 GCTGTTGGGGAACGTAGCAG 61.299 60.000 0.00 0.00 32.32 4.24
139 140 1.302192 GCTGTTGGGGAACGTAGCA 60.302 57.895 0.00 0.00 0.00 3.49
140 141 1.298859 CTGCTGTTGGGGAACGTAGC 61.299 60.000 0.00 0.00 0.00 3.58
141 142 0.320374 TCTGCTGTTGGGGAACGTAG 59.680 55.000 0.00 0.00 0.00 3.51
142 143 0.759959 TTCTGCTGTTGGGGAACGTA 59.240 50.000 0.00 0.00 0.00 3.57
143 144 0.110486 ATTCTGCTGTTGGGGAACGT 59.890 50.000 0.00 0.00 0.00 3.99
144 145 0.804989 GATTCTGCTGTTGGGGAACG 59.195 55.000 0.00 0.00 0.00 3.95
145 146 0.804989 CGATTCTGCTGTTGGGGAAC 59.195 55.000 0.00 0.00 0.00 3.62
146 147 0.400213 ACGATTCTGCTGTTGGGGAA 59.600 50.000 0.00 0.00 0.00 3.97
147 148 0.400213 AACGATTCTGCTGTTGGGGA 59.600 50.000 0.00 0.00 0.00 4.81
148 149 1.200020 GAAACGATTCTGCTGTTGGGG 59.800 52.381 0.00 0.00 32.57 4.96
149 150 1.879380 TGAAACGATTCTGCTGTTGGG 59.121 47.619 6.98 0.00 36.48 4.12
150 151 2.549754 ACTGAAACGATTCTGCTGTTGG 59.450 45.455 11.38 0.00 37.86 3.77
151 152 3.496130 AGACTGAAACGATTCTGCTGTTG 59.504 43.478 11.38 0.00 37.86 3.33
152 153 3.733337 AGACTGAAACGATTCTGCTGTT 58.267 40.909 11.38 0.00 37.86 3.16
153 154 3.393089 AGACTGAAACGATTCTGCTGT 57.607 42.857 11.38 3.68 37.86 4.40
154 155 4.489810 AGTAGACTGAAACGATTCTGCTG 58.510 43.478 11.38 0.92 37.86 4.41
155 156 4.792521 AGTAGACTGAAACGATTCTGCT 57.207 40.909 11.38 11.39 37.86 4.24
225 226 9.462174 CAATGGATAGAAAAGCGCAAAATTATA 57.538 29.630 11.47 0.56 0.00 0.98
230 231 5.132897 ACAATGGATAGAAAAGCGCAAAA 57.867 34.783 11.47 0.00 0.00 2.44
247 248 5.116983 GTGAACAAATTACTGCCGAACAATG 59.883 40.000 0.00 0.00 0.00 2.82
279 280 9.073475 GAGGCTTCTCTCAAGATAGAAGTTATA 57.927 37.037 19.81 0.00 46.82 0.98
284 286 6.772716 ACTAGAGGCTTCTCTCAAGATAGAAG 59.227 42.308 16.50 16.50 43.99 2.85
324 326 9.635404 AACTTATATGATGGAAAATAAACCCGA 57.365 29.630 0.00 0.00 0.00 5.14
453 460 9.982291 TCTTAACAATTATTCGCAAAGTGATAC 57.018 29.630 0.00 0.00 0.00 2.24
455 462 8.946085 TCTCTTAACAATTATTCGCAAAGTGAT 58.054 29.630 0.00 0.00 0.00 3.06
471 478 5.319043 AGGGGTTGTCAATCTCTTAACAA 57.681 39.130 0.00 0.00 0.00 2.83
472 479 4.993705 AGGGGTTGTCAATCTCTTAACA 57.006 40.909 0.00 0.00 0.00 2.41
475 482 6.346096 CGATAAAGGGGTTGTCAATCTCTTA 58.654 40.000 11.44 1.46 0.00 2.10
479 486 3.279434 GCGATAAAGGGGTTGTCAATCT 58.721 45.455 0.00 0.00 0.00 2.40
496 503 1.196808 CCAACTTACAAGCAACGCGAT 59.803 47.619 15.93 0.00 0.00 4.58
505 512 5.164002 GCACAAACAAACACCAACTTACAAG 60.164 40.000 0.00 0.00 0.00 3.16
509 516 4.489810 CTGCACAAACAAACACCAACTTA 58.510 39.130 0.00 0.00 0.00 2.24
600 608 3.070748 TGATGCAGCAAAGTAGCGTAAA 58.929 40.909 0.00 0.00 40.15 2.01
628 636 7.468631 GCTTGTGTTGGTTTTCTTATGAAGAGA 60.469 37.037 0.00 0.00 39.03 3.10
636 644 5.906113 TTGAGCTTGTGTTGGTTTTCTTA 57.094 34.783 0.00 0.00 0.00 2.10
637 645 4.799564 TTGAGCTTGTGTTGGTTTTCTT 57.200 36.364 0.00 0.00 0.00 2.52
638 646 4.799564 TTTGAGCTTGTGTTGGTTTTCT 57.200 36.364 0.00 0.00 0.00 2.52
649 658 1.523758 CCGCTACCTTTTGAGCTTGT 58.476 50.000 0.00 0.00 36.50 3.16
659 668 1.472662 ATATCCGCTGCCGCTACCTT 61.473 55.000 0.00 0.00 0.00 3.50
678 687 0.674581 CATCCTCAAAGCGCCACTGA 60.675 55.000 2.29 3.34 0.00 3.41
680 689 2.042831 GCATCCTCAAAGCGCCACT 61.043 57.895 2.29 0.00 0.00 4.00
682 691 2.751436 GGCATCCTCAAAGCGCCA 60.751 61.111 2.29 0.00 42.50 5.69
699 708 2.826777 AAAGCTCCTGGGTGATGGCG 62.827 60.000 0.00 0.00 0.00 5.69
700 709 1.000396 AAAGCTCCTGGGTGATGGC 60.000 57.895 0.00 0.00 0.00 4.40
703 712 2.081955 AGCAAAGCTCCTGGGTGAT 58.918 52.632 0.00 0.00 30.62 3.06
767 776 4.431416 TTTAACTTCTCTTCTGTGGCCA 57.569 40.909 0.00 0.00 0.00 5.36
777 786 6.421485 AGCCATCACATCATTTAACTTCTCT 58.579 36.000 0.00 0.00 0.00 3.10
789 798 0.543277 GTCCCAGAGCCATCACATCA 59.457 55.000 0.00 0.00 0.00 3.07
792 801 1.556373 CCTGTCCCAGAGCCATCACA 61.556 60.000 0.00 0.00 32.44 3.58
793 802 1.222936 CCTGTCCCAGAGCCATCAC 59.777 63.158 0.00 0.00 32.44 3.06
808 817 2.652095 CCCAAACTGCCATGCCCTG 61.652 63.158 0.00 0.00 0.00 4.45
809 818 2.284112 CCCAAACTGCCATGCCCT 60.284 61.111 0.00 0.00 0.00 5.19
836 845 2.382770 TGCCCCATATTGGAGCCGT 61.383 57.895 0.00 0.00 40.96 5.68
844 853 1.548269 CAAACCGTTGTGCCCCATATT 59.452 47.619 0.00 0.00 0.00 1.28
845 854 1.181786 CAAACCGTTGTGCCCCATAT 58.818 50.000 0.00 0.00 0.00 1.78
846 855 0.896019 CCAAACCGTTGTGCCCCATA 60.896 55.000 0.00 0.00 32.40 2.74
856 865 1.304134 GCTCCCATCCCAAACCGTT 60.304 57.895 0.00 0.00 0.00 4.44
890 899 3.068064 CCCCAAACCGTCATGCCC 61.068 66.667 0.00 0.00 0.00 5.36
916 925 2.362503 TGTCCATCCGAGAGCCGT 60.363 61.111 0.00 0.00 36.31 5.68
922 931 4.227134 CGCCCCTGTCCATCCGAG 62.227 72.222 0.00 0.00 0.00 4.63
923 932 4.770362 TCGCCCCTGTCCATCCGA 62.770 66.667 0.00 0.00 0.00 4.55
924 933 2.608970 AAATCGCCCCTGTCCATCCG 62.609 60.000 0.00 0.00 0.00 4.18
928 937 2.354729 CCAAATCGCCCCTGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
932 941 4.447342 AGCCCCAAATCGCCCCTG 62.447 66.667 0.00 0.00 0.00 4.45
974 983 1.525619 GTGAGCACAAACTACCGTCAC 59.474 52.381 0.00 0.00 0.00 3.67
975 984 1.411246 AGTGAGCACAAACTACCGTCA 59.589 47.619 3.19 0.00 0.00 4.35
976 985 1.792949 CAGTGAGCACAAACTACCGTC 59.207 52.381 3.19 0.00 0.00 4.79
977 986 1.540363 CCAGTGAGCACAAACTACCGT 60.540 52.381 3.19 0.00 0.00 4.83
978 987 1.148310 CCAGTGAGCACAAACTACCG 58.852 55.000 3.19 0.00 0.00 4.02
980 989 0.875059 GCCCAGTGAGCACAAACTAC 59.125 55.000 3.19 0.00 0.00 2.73
981 990 0.472044 TGCCCAGTGAGCACAAACTA 59.528 50.000 0.00 0.00 34.69 2.24
985 994 0.890542 GACATGCCCAGTGAGCACAA 60.891 55.000 0.00 0.00 44.40 3.33
999 1008 7.307493 TCGAACATTTTGAGGATAAGACATG 57.693 36.000 0.00 0.00 0.00 3.21
1000 1009 7.989741 AGATCGAACATTTTGAGGATAAGACAT 59.010 33.333 0.00 0.00 0.00 3.06
1001 1010 7.278646 CAGATCGAACATTTTGAGGATAAGACA 59.721 37.037 0.00 0.00 0.00 3.41
1005 1050 5.296780 GCCAGATCGAACATTTTGAGGATAA 59.703 40.000 0.00 0.00 0.00 1.75
1013 1058 3.274288 GAGGAGCCAGATCGAACATTTT 58.726 45.455 0.00 0.00 0.00 1.82
1014 1059 2.420687 GGAGGAGCCAGATCGAACATTT 60.421 50.000 0.00 0.00 36.34 2.32
1021 1066 1.739049 GACAGGAGGAGCCAGATCG 59.261 63.158 0.00 0.00 40.02 3.69
1077 1122 8.942338 AGGAAAAAGGACTGTTTTGAAAATAC 57.058 30.769 0.00 0.00 29.93 1.89
1083 1128 7.239763 AGAAAAGGAAAAAGGACTGTTTTGA 57.760 32.000 0.00 0.00 29.93 2.69
1089 1134 5.380900 AGAGGAGAAAAGGAAAAAGGACTG 58.619 41.667 0.00 0.00 0.00 3.51
1090 1135 5.626142 GAGAGGAGAAAAGGAAAAAGGACT 58.374 41.667 0.00 0.00 0.00 3.85
1096 1141 3.071023 TCAGCGAGAGGAGAAAAGGAAAA 59.929 43.478 0.00 0.00 0.00 2.29
1098 1143 2.248248 TCAGCGAGAGGAGAAAAGGAA 58.752 47.619 0.00 0.00 0.00 3.36
1108 1153 0.102120 AGCGAAGAATCAGCGAGAGG 59.898 55.000 0.00 0.00 35.78 3.69
1114 1159 0.531753 GGGGAGAGCGAAGAATCAGC 60.532 60.000 0.00 0.00 0.00 4.26
1323 4672 3.764466 AAGGCTGCGGAGGTCTCG 61.764 66.667 5.93 0.00 0.00 4.04
1324 4673 2.125350 CAAGGCTGCGGAGGTCTC 60.125 66.667 5.93 0.00 0.00 3.36
1325 4674 4.400961 GCAAGGCTGCGGAGGTCT 62.401 66.667 5.93 0.00 39.20 3.85
1371 4729 3.736482 GACGCGGCGGTAGAGTGAG 62.736 68.421 27.37 0.00 0.00 3.51
1408 4766 3.003763 GGGAGTCAGCGGGAGGTT 61.004 66.667 0.00 0.00 39.46 3.50
1590 4948 3.734231 CAGCTGCAAGAACACAAAGAATG 59.266 43.478 0.00 0.00 34.07 2.67
1601 4959 1.610038 CCACATTGACAGCTGCAAGAA 59.390 47.619 22.06 9.03 34.07 2.52
1727 5085 0.976641 TTCACCTGGATCGACAAGCT 59.023 50.000 0.00 0.00 0.00 3.74
1750 5108 2.564947 GAGGGATCCGTAGCAATGAGAT 59.435 50.000 7.00 0.00 0.00 2.75
1990 5348 0.319083 CAAAATTCCCAGCAGCTGCA 59.681 50.000 38.24 19.65 45.16 4.41
2224 5582 1.064825 AGACATTCCAAACCCGGTCT 58.935 50.000 0.00 0.00 0.00 3.85
2393 5751 3.181487 CCTTTGGCGCAGTAAGCATTTAT 60.181 43.478 10.83 0.00 46.13 1.40
2452 5810 0.539986 GTGTCCTCCCTTTGGCGATA 59.460 55.000 0.00 0.00 0.00 2.92
2666 6024 6.537660 GTCAAAGGTACTAAATTCCGTAGCAT 59.462 38.462 14.70 4.50 38.49 3.79
2851 6209 3.636282 ACAACCAACGAAATTGCCTAC 57.364 42.857 0.00 0.00 36.93 3.18
2854 6212 5.915812 AATAAACAACCAACGAAATTGCC 57.084 34.783 0.00 0.00 36.93 4.52
2891 6249 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
2892 6250 2.544844 AGTATTTCCAGACGGAGGGA 57.455 50.000 0.00 0.00 44.10 4.20
2893 6251 3.297736 ACTAGTATTTCCAGACGGAGGG 58.702 50.000 0.00 0.00 44.10 4.30
2894 6252 3.003482 CGACTAGTATTTCCAGACGGAGG 59.997 52.174 0.00 0.00 44.10 4.30
2895 6253 3.548415 GCGACTAGTATTTCCAGACGGAG 60.548 52.174 0.00 0.00 44.10 4.63
2896 6254 2.357009 GCGACTAGTATTTCCAGACGGA 59.643 50.000 0.00 0.00 40.60 4.69
2897 6255 2.098607 TGCGACTAGTATTTCCAGACGG 59.901 50.000 0.00 0.00 0.00 4.79
2898 6256 3.416119 TGCGACTAGTATTTCCAGACG 57.584 47.619 0.00 0.00 0.00 4.18
2899 6257 7.095607 CCATTTATGCGACTAGTATTTCCAGAC 60.096 40.741 0.00 0.00 0.00 3.51
2900 6258 6.929049 CCATTTATGCGACTAGTATTTCCAGA 59.071 38.462 0.00 0.00 0.00 3.86
2901 6259 6.929049 TCCATTTATGCGACTAGTATTTCCAG 59.071 38.462 0.00 0.00 0.00 3.86
2902 6260 6.822442 TCCATTTATGCGACTAGTATTTCCA 58.178 36.000 0.00 0.00 0.00 3.53
2903 6261 7.907214 ATCCATTTATGCGACTAGTATTTCC 57.093 36.000 0.00 0.00 0.00 3.13
2909 6267 8.567948 CCATTTTAATCCATTTATGCGACTAGT 58.432 33.333 0.00 0.00 0.00 2.57
2910 6268 8.783093 TCCATTTTAATCCATTTATGCGACTAG 58.217 33.333 0.00 0.00 0.00 2.57
2911 6269 8.684386 TCCATTTTAATCCATTTATGCGACTA 57.316 30.769 0.00 0.00 0.00 2.59
2912 6270 7.581213 TCCATTTTAATCCATTTATGCGACT 57.419 32.000 0.00 0.00 0.00 4.18
2913 6271 7.867403 ACATCCATTTTAATCCATTTATGCGAC 59.133 33.333 0.00 0.00 0.00 5.19
2914 6272 7.950512 ACATCCATTTTAATCCATTTATGCGA 58.049 30.769 0.00 0.00 0.00 5.10
2915 6273 9.859427 ATACATCCATTTTAATCCATTTATGCG 57.141 29.630 0.00 0.00 0.00 4.73
2944 6302 9.106070 GGATGTATCCAGACGTATTTTAGTTTT 57.894 33.333 6.03 0.00 46.38 2.43
2945 6303 8.658499 GGATGTATCCAGACGTATTTTAGTTT 57.342 34.615 6.03 0.00 46.38 2.66
2962 6320 4.572389 ACTTGTCAGCGAAATGGATGTATC 59.428 41.667 0.00 0.00 0.00 2.24
2963 6321 4.517285 ACTTGTCAGCGAAATGGATGTAT 58.483 39.130 0.00 0.00 0.00 2.29
2964 6322 3.937814 ACTTGTCAGCGAAATGGATGTA 58.062 40.909 0.00 0.00 0.00 2.29
2965 6323 2.783135 ACTTGTCAGCGAAATGGATGT 58.217 42.857 0.00 0.00 0.00 3.06
2966 6324 5.490139 AATACTTGTCAGCGAAATGGATG 57.510 39.130 0.00 0.00 0.00 3.51
2967 6325 5.066505 GGAAATACTTGTCAGCGAAATGGAT 59.933 40.000 0.00 0.00 0.00 3.41
2968 6326 4.394920 GGAAATACTTGTCAGCGAAATGGA 59.605 41.667 0.00 0.00 0.00 3.41
2969 6327 4.662145 GGAAATACTTGTCAGCGAAATGG 58.338 43.478 0.00 0.00 0.00 3.16
2970 6328 4.334443 CGGAAATACTTGTCAGCGAAATG 58.666 43.478 0.00 0.00 0.00 2.32
2971 6329 3.374058 CCGGAAATACTTGTCAGCGAAAT 59.626 43.478 0.00 0.00 0.00 2.17
2972 6330 2.739913 CCGGAAATACTTGTCAGCGAAA 59.260 45.455 0.00 0.00 0.00 3.46
2973 6331 2.028839 TCCGGAAATACTTGTCAGCGAA 60.029 45.455 0.00 0.00 0.00 4.70
2974 6332 1.546923 TCCGGAAATACTTGTCAGCGA 59.453 47.619 0.00 0.00 0.00 4.93
2975 6333 1.659098 GTCCGGAAATACTTGTCAGCG 59.341 52.381 5.23 0.00 0.00 5.18
2976 6334 1.659098 CGTCCGGAAATACTTGTCAGC 59.341 52.381 5.23 0.00 0.00 4.26
2977 6335 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
2978 6336 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2979 6337 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2980 6338 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2981 6339 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2982 6340 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2983 6341 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2984 6342 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2985 6343 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2986 6344 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2987 6345 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2988 6346 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2989 6347 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2990 6348 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
2991 6349 2.124236 AGCTACTCCCTCCGTCCG 60.124 66.667 0.00 0.00 0.00 4.79
2992 6350 2.787567 GCAGCTACTCCCTCCGTCC 61.788 68.421 0.00 0.00 0.00 4.79
2993 6351 0.465824 TAGCAGCTACTCCCTCCGTC 60.466 60.000 0.00 0.00 0.00 4.79
2994 6352 0.033405 TTAGCAGCTACTCCCTCCGT 60.033 55.000 0.00 0.00 0.00 4.69
2995 6353 0.386113 GTTAGCAGCTACTCCCTCCG 59.614 60.000 0.00 0.00 0.00 4.63
2996 6354 0.753867 GGTTAGCAGCTACTCCCTCC 59.246 60.000 0.00 0.00 0.00 4.30
2997 6355 0.753867 GGGTTAGCAGCTACTCCCTC 59.246 60.000 24.47 8.24 31.88 4.30
2998 6356 0.042731 TGGGTTAGCAGCTACTCCCT 59.957 55.000 28.46 0.00 34.05 4.20
2999 6357 1.070914 GATGGGTTAGCAGCTACTCCC 59.929 57.143 24.78 24.78 33.75 4.30
3000 6358 1.070914 GGATGGGTTAGCAGCTACTCC 59.929 57.143 0.00 7.89 0.00 3.85
3001 6359 1.762957 TGGATGGGTTAGCAGCTACTC 59.237 52.381 0.00 0.00 0.00 2.59
3002 6360 1.879575 TGGATGGGTTAGCAGCTACT 58.120 50.000 0.00 0.00 0.00 2.57
3003 6361 2.710096 TTGGATGGGTTAGCAGCTAC 57.290 50.000 0.00 0.00 0.00 3.58
3004 6362 3.951563 AATTGGATGGGTTAGCAGCTA 57.048 42.857 0.00 0.00 0.00 3.32
3005 6363 2.834638 AATTGGATGGGTTAGCAGCT 57.165 45.000 0.00 0.00 0.00 4.24
3093 6455 3.941188 ACTGCCCTGTGACACCGG 61.941 66.667 8.99 8.99 0.00 5.28
3237 6599 2.334023 GGTAGATGGAGCCAAGGATCT 58.666 52.381 4.18 0.00 0.00 2.75
3238 6600 2.050144 TGGTAGATGGAGCCAAGGATC 58.950 52.381 0.00 0.00 0.00 3.36
3271 6636 0.393077 AGCAGTTAGGTCGCAAGTGT 59.607 50.000 0.00 0.00 39.48 3.55
3315 6680 3.504863 CGACTTTGGATGCCATGAAAAG 58.495 45.455 0.00 7.00 31.53 2.27
3346 6711 5.328724 GGCTATCAGCTCATGTCAGACATG 61.329 50.000 30.66 30.66 46.20 3.21
3373 6738 8.786826 TCTCTGGTTTATTACACAAGGTATTG 57.213 34.615 0.00 0.00 42.46 1.90
3459 6824 3.282021 TCAGTAAGATGCCTTTCATGCC 58.718 45.455 0.00 0.00 35.05 4.40
3569 6938 2.971598 CGCCCACAACCATCCCTCT 61.972 63.158 0.00 0.00 0.00 3.69
3670 7057 6.947733 TCCACAAGTGATCTGAACCATTATTT 59.052 34.615 0.94 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.