Multiple sequence alignment - TraesCS1A01G168000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G168000 chr1A 100.000 2753 0 0 1 2753 300725628 300722876 0.000000e+00 5084.0
1 TraesCS1A01G168000 chr1A 97.805 410 8 1 1 409 324326483 324326892 0.000000e+00 706.0
2 TraesCS1A01G168000 chr1A 97.561 410 9 1 1 409 219999728 220000137 0.000000e+00 701.0
3 TraesCS1A01G168000 chr1A 83.359 661 82 13 2093 2742 577399966 577399323 1.100000e-163 586.0
4 TraesCS1A01G168000 chr1A 99.145 117 1 0 413 529 300722576 300722692 7.720000e-51 211.0
5 TraesCS1A01G168000 chr1B 96.754 1294 13 10 409 1701 16766194 16767459 0.000000e+00 2130.0
6 TraesCS1A01G168000 chr1B 98.674 1056 11 1 1701 2753 16768994 16770049 0.000000e+00 1869.0
7 TraesCS1A01G168000 chr1B 97.458 118 3 0 412 529 16771901 16771784 4.650000e-48 202.0
8 TraesCS1A01G168000 chr7B 96.107 1310 34 3 409 1701 75905953 75904644 0.000000e+00 2121.0
9 TraesCS1A01G168000 chr7B 98.575 1053 15 0 1701 2753 75903067 75902015 0.000000e+00 1862.0
10 TraesCS1A01G168000 chr7B 82.148 661 78 20 2093 2742 689854802 689854171 5.220000e-147 531.0
11 TraesCS1A01G168000 chr7B 98.214 112 2 0 417 528 75901719 75901830 2.160000e-46 196.0
12 TraesCS1A01G168000 chr7B 87.209 86 4 5 1743 1825 659925300 659925219 1.050000e-14 91.6
13 TraesCS1A01G168000 chr7D 94.667 1050 53 1 1704 2753 192062566 192063612 0.000000e+00 1626.0
14 TraesCS1A01G168000 chr7D 93.333 1050 59 8 398 1441 192058465 192059509 0.000000e+00 1541.0
15 TraesCS1A01G168000 chr7D 82.295 305 15 16 1421 1701 192059528 192059817 7.670000e-56 228.0
16 TraesCS1A01G168000 chr7D 95.868 121 5 0 409 529 192063888 192063768 2.160000e-46 196.0
17 TraesCS1A01G168000 chr6A 94.471 1049 52 4 1704 2752 428629892 428630934 0.000000e+00 1611.0
18 TraesCS1A01G168000 chr6A 91.795 1036 67 11 409 1441 428625796 428626816 0.000000e+00 1426.0
19 TraesCS1A01G168000 chr6A 86.292 1014 94 21 409 1407 497793402 497794385 0.000000e+00 1061.0
20 TraesCS1A01G168000 chr6A 97.561 410 9 1 1 409 179082113 179081704 0.000000e+00 701.0
21 TraesCS1A01G168000 chr6A 82.436 706 95 19 2061 2753 497840356 497841045 8.490000e-165 590.0
22 TraesCS1A01G168000 chr6A 83.642 324 13 13 1421 1704 428626835 428627158 4.520000e-68 268.0
23 TraesCS1A01G168000 chr6A 90.840 131 11 1 400 529 428631245 428631115 1.010000e-39 174.0
24 TraesCS1A01G168000 chr6A 82.474 97 13 3 1605 1701 497796210 497796302 6.320000e-12 82.4
25 TraesCS1A01G168000 chr5A 83.683 1048 115 33 582 1606 658804190 658805204 0.000000e+00 937.0
26 TraesCS1A01G168000 chr5A 97.436 78 2 0 1624 1701 658805279 658805356 1.720000e-27 134.0
27 TraesCS1A01G168000 chrUn 100.000 414 0 0 965 1378 477407128 477406715 0.000000e+00 765.0
28 TraesCS1A01G168000 chr3B 77.344 1333 221 59 409 1701 9204200 9202909 0.000000e+00 713.0
29 TraesCS1A01G168000 chr4A 97.805 410 8 1 1 409 568796440 568796849 0.000000e+00 706.0
30 TraesCS1A01G168000 chr4A 97.561 410 9 1 1 409 488116681 488116272 0.000000e+00 701.0
31 TraesCS1A01G168000 chr4A 97.561 410 9 1 1 409 527529043 527529452 0.000000e+00 701.0
32 TraesCS1A01G168000 chr7A 97.561 410 9 1 1 409 257897038 257896629 0.000000e+00 701.0
33 TraesCS1A01G168000 chr3A 97.561 410 9 1 1 409 457862988 457862579 0.000000e+00 701.0
34 TraesCS1A01G168000 chr3A 97.561 410 9 1 1 409 457868392 457867983 0.000000e+00 701.0
35 TraesCS1A01G168000 chr3A 82.128 470 64 14 2268 2734 364188913 364189365 4.300000e-103 385.0
36 TraesCS1A01G168000 chr5B 76.258 1331 233 61 409 1698 387726330 387727618 5.000000e-177 630.0
37 TraesCS1A01G168000 chr2B 82.451 661 76 20 2093 2742 769995995 769996626 2.410000e-150 542.0
38 TraesCS1A01G168000 chr2B 81.591 641 96 11 2112 2742 679646358 679645730 6.800000e-141 510.0
39 TraesCS1A01G168000 chr2B 82.249 338 47 5 2245 2581 200707691 200707366 2.090000e-71 279.0
40 TraesCS1A01G168000 chr2B 81.851 281 37 5 2248 2527 200700326 200700059 9.920000e-55 224.0
41 TraesCS1A01G168000 chr6B 82.148 661 79 19 2093 2742 4278222 4278854 5.220000e-147 531.0
42 TraesCS1A01G168000 chr2D 85.283 530 56 8 649 1177 616443238 616442730 6.750000e-146 527.0
43 TraesCS1A01G168000 chr2D 85.882 85 7 3 1743 1825 577707790 577707709 4.880000e-13 86.1
44 TraesCS1A01G168000 chr2D 84.706 85 8 3 1743 1825 536082307 536082226 2.270000e-11 80.5
45 TraesCS1A01G168000 chr5D 85.976 492 50 10 2252 2742 74209841 74210314 2.450000e-140 508.0
46 TraesCS1A01G168000 chr5D 84.884 86 7 4 1737 1819 357886158 357886240 6.320000e-12 82.4
47 TraesCS1A01G168000 chr3D 87.342 79 5 3 1743 1819 420459701 420459776 4.880000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G168000 chr1A 300722876 300725628 2752 True 5084.000000 5084 100.000000 1 2753 1 chr1A.!!$R1 2752
1 TraesCS1A01G168000 chr1A 577399323 577399966 643 True 586.000000 586 83.359000 2093 2742 1 chr1A.!!$R2 649
2 TraesCS1A01G168000 chr1B 16766194 16770049 3855 False 1999.500000 2130 97.714000 409 2753 2 chr1B.!!$F1 2344
3 TraesCS1A01G168000 chr7B 75902015 75905953 3938 True 1991.500000 2121 97.341000 409 2753 2 chr7B.!!$R3 2344
4 TraesCS1A01G168000 chr7B 689854171 689854802 631 True 531.000000 531 82.148000 2093 2742 1 chr7B.!!$R2 649
5 TraesCS1A01G168000 chr7D 192058465 192063612 5147 False 1131.666667 1626 90.098333 398 2753 3 chr7D.!!$F1 2355
6 TraesCS1A01G168000 chr6A 428625796 428630934 5138 False 1101.666667 1611 89.969333 409 2752 3 chr6A.!!$F2 2343
7 TraesCS1A01G168000 chr6A 497840356 497841045 689 False 590.000000 590 82.436000 2061 2753 1 chr6A.!!$F1 692
8 TraesCS1A01G168000 chr6A 497793402 497796302 2900 False 571.700000 1061 84.383000 409 1701 2 chr6A.!!$F3 1292
9 TraesCS1A01G168000 chr5A 658804190 658805356 1166 False 535.500000 937 90.559500 582 1701 2 chr5A.!!$F1 1119
10 TraesCS1A01G168000 chr3B 9202909 9204200 1291 True 713.000000 713 77.344000 409 1701 1 chr3B.!!$R1 1292
11 TraesCS1A01G168000 chr5B 387726330 387727618 1288 False 630.000000 630 76.258000 409 1698 1 chr5B.!!$F1 1289
12 TraesCS1A01G168000 chr2B 769995995 769996626 631 False 542.000000 542 82.451000 2093 2742 1 chr2B.!!$F1 649
13 TraesCS1A01G168000 chr2B 679645730 679646358 628 True 510.000000 510 81.591000 2112 2742 1 chr2B.!!$R3 630
14 TraesCS1A01G168000 chr6B 4278222 4278854 632 False 531.000000 531 82.148000 2093 2742 1 chr6B.!!$F1 649
15 TraesCS1A01G168000 chr2D 616442730 616443238 508 True 527.000000 527 85.283000 649 1177 1 chr2D.!!$R3 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.028902 GCGGTGTGTTTGTTGAGACC 59.971 55.0 0.0 0.0 0.00 3.85 F
335 336 0.106918 TTGCGGTGTTCTTTCCCTGT 60.107 50.0 0.0 0.0 0.00 4.00 F
1519 3204 0.170561 GCAAGTGGATGCAGAGCAAG 59.829 55.0 0.0 0.0 43.62 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 3214 0.179009 TTGCTCTGCTTCCACTTGCT 60.179 50.0 0.0 0.0 0.0 3.91 R
1530 3215 0.240411 CTTGCTCTGCTTCCACTTGC 59.760 55.0 0.0 0.0 0.0 4.01 R
2660 7352 1.879575 AGGAGGGACATGGATTCGAA 58.120 50.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.957877 GTCTATCTCAGACCTTCGGGG 59.042 57.143 0.00 0.00 46.94 5.73
25 26 0.676736 CTATCTCAGACCTTCGGGGC 59.323 60.000 0.00 0.00 45.64 5.80
26 27 0.759436 TATCTCAGACCTTCGGGGCC 60.759 60.000 0.00 0.00 46.78 5.80
27 28 2.822643 ATCTCAGACCTTCGGGGCCA 62.823 60.000 4.39 0.00 46.78 5.36
28 29 2.285368 TCAGACCTTCGGGGCCAT 60.285 61.111 4.39 0.00 46.78 4.40
29 30 1.002403 TCAGACCTTCGGGGCCATA 59.998 57.895 4.39 0.00 46.78 2.74
30 31 1.048724 TCAGACCTTCGGGGCCATAG 61.049 60.000 4.39 0.00 46.78 2.23
31 32 1.003051 AGACCTTCGGGGCCATAGT 59.997 57.895 4.39 0.00 46.78 2.12
32 33 0.620700 AGACCTTCGGGGCCATAGTT 60.621 55.000 4.39 0.00 46.78 2.24
33 34 1.125633 GACCTTCGGGGCCATAGTTA 58.874 55.000 4.39 0.00 37.07 2.24
34 35 1.697982 GACCTTCGGGGCCATAGTTAT 59.302 52.381 4.39 0.00 37.07 1.89
35 36 2.105993 GACCTTCGGGGCCATAGTTATT 59.894 50.000 4.39 0.00 37.07 1.40
36 37 3.320129 ACCTTCGGGGCCATAGTTATTA 58.680 45.455 4.39 0.00 40.03 0.98
37 38 3.072038 ACCTTCGGGGCCATAGTTATTAC 59.928 47.826 4.39 0.00 40.03 1.89
38 39 3.558533 CCTTCGGGGCCATAGTTATTACC 60.559 52.174 4.39 0.00 0.00 2.85
39 40 2.980548 TCGGGGCCATAGTTATTACCT 58.019 47.619 4.39 0.00 0.00 3.08
40 41 4.130719 TCGGGGCCATAGTTATTACCTA 57.869 45.455 4.39 0.00 0.00 3.08
41 42 4.091549 TCGGGGCCATAGTTATTACCTAG 58.908 47.826 4.39 0.00 0.00 3.02
42 43 4.091549 CGGGGCCATAGTTATTACCTAGA 58.908 47.826 4.39 0.00 0.00 2.43
43 44 4.715297 CGGGGCCATAGTTATTACCTAGAT 59.285 45.833 4.39 0.00 0.00 1.98
44 45 5.395324 CGGGGCCATAGTTATTACCTAGATG 60.395 48.000 4.39 0.00 0.00 2.90
45 46 5.104485 GGGGCCATAGTTATTACCTAGATGG 60.104 48.000 4.39 0.00 42.93 3.51
47 48 6.301169 GCCATAGTTATTACCTAGATGGCT 57.699 41.667 15.47 0.00 46.00 4.75
48 49 6.712276 GCCATAGTTATTACCTAGATGGCTT 58.288 40.000 15.47 0.00 46.00 4.35
49 50 6.819146 GCCATAGTTATTACCTAGATGGCTTC 59.181 42.308 15.47 0.00 46.00 3.86
50 51 7.310734 GCCATAGTTATTACCTAGATGGCTTCT 60.311 40.741 15.47 8.09 46.00 2.85
51 52 8.598041 CCATAGTTATTACCTAGATGGCTTCTT 58.402 37.037 8.31 0.00 40.22 2.52
52 53 9.646427 CATAGTTATTACCTAGATGGCTTCTTC 57.354 37.037 8.31 0.00 40.22 2.87
53 54 7.922699 AGTTATTACCTAGATGGCTTCTTCT 57.077 36.000 8.31 0.00 40.22 2.85
54 55 7.958088 AGTTATTACCTAGATGGCTTCTTCTC 58.042 38.462 8.31 0.00 40.22 2.87
55 56 7.787424 AGTTATTACCTAGATGGCTTCTTCTCT 59.213 37.037 8.31 0.00 40.22 3.10
56 57 6.664428 ATTACCTAGATGGCTTCTTCTCTC 57.336 41.667 8.31 0.00 40.22 3.20
57 58 4.264373 ACCTAGATGGCTTCTTCTCTCT 57.736 45.455 8.31 0.00 40.22 3.10
58 59 4.619679 ACCTAGATGGCTTCTTCTCTCTT 58.380 43.478 8.31 0.00 40.22 2.85
59 60 5.029474 ACCTAGATGGCTTCTTCTCTCTTT 58.971 41.667 8.31 0.00 40.22 2.52
60 61 5.487131 ACCTAGATGGCTTCTTCTCTCTTTT 59.513 40.000 8.31 0.00 40.22 2.27
61 62 6.012945 ACCTAGATGGCTTCTTCTCTCTTTTT 60.013 38.462 8.31 0.00 40.22 1.94
62 63 6.315891 CCTAGATGGCTTCTTCTCTCTTTTTG 59.684 42.308 8.31 0.00 35.79 2.44
63 64 5.008980 AGATGGCTTCTTCTCTCTTTTTGG 58.991 41.667 0.00 0.00 0.00 3.28
64 65 4.437682 TGGCTTCTTCTCTCTTTTTGGA 57.562 40.909 0.00 0.00 0.00 3.53
65 66 4.990526 TGGCTTCTTCTCTCTTTTTGGAT 58.009 39.130 0.00 0.00 0.00 3.41
66 67 5.006386 TGGCTTCTTCTCTCTTTTTGGATC 58.994 41.667 0.00 0.00 0.00 3.36
67 68 5.222007 TGGCTTCTTCTCTCTTTTTGGATCT 60.222 40.000 0.00 0.00 0.00 2.75
68 69 5.353956 GGCTTCTTCTCTCTTTTTGGATCTC 59.646 44.000 0.00 0.00 0.00 2.75
69 70 5.936956 GCTTCTTCTCTCTTTTTGGATCTCA 59.063 40.000 0.00 0.00 0.00 3.27
70 71 6.429385 GCTTCTTCTCTCTTTTTGGATCTCAA 59.571 38.462 0.00 0.00 0.00 3.02
71 72 7.121020 GCTTCTTCTCTCTTTTTGGATCTCAAT 59.879 37.037 0.00 0.00 34.98 2.57
72 73 9.664332 CTTCTTCTCTCTTTTTGGATCTCAATA 57.336 33.333 0.00 0.00 34.98 1.90
73 74 9.442047 TTCTTCTCTCTTTTTGGATCTCAATAC 57.558 33.333 0.00 0.00 34.98 1.89
74 75 8.597167 TCTTCTCTCTTTTTGGATCTCAATACA 58.403 33.333 0.00 0.00 34.98 2.29
75 76 9.224267 CTTCTCTCTTTTTGGATCTCAATACAA 57.776 33.333 0.00 0.00 33.72 2.41
76 77 9.573166 TTCTCTCTTTTTGGATCTCAATACAAA 57.427 29.630 0.00 0.00 42.72 2.83
77 78 9.224267 TCTCTCTTTTTGGATCTCAATACAAAG 57.776 33.333 0.00 3.63 44.58 2.77
78 79 8.924511 TCTCTTTTTGGATCTCAATACAAAGT 57.075 30.769 13.44 0.00 44.58 2.66
79 80 9.354673 TCTCTTTTTGGATCTCAATACAAAGTT 57.645 29.630 13.44 0.00 44.58 2.66
80 81 9.617975 CTCTTTTTGGATCTCAATACAAAGTTC 57.382 33.333 13.44 0.00 44.58 3.01
81 82 9.354673 TCTTTTTGGATCTCAATACAAAGTTCT 57.645 29.630 13.44 0.00 44.58 3.01
82 83 9.617975 CTTTTTGGATCTCAATACAAAGTTCTC 57.382 33.333 0.00 0.00 44.58 2.87
83 84 7.687941 TTTGGATCTCAATACAAAGTTCTCC 57.312 36.000 0.00 0.00 40.15 3.71
84 85 5.745227 TGGATCTCAATACAAAGTTCTCCC 58.255 41.667 0.00 0.00 0.00 4.30
85 86 5.126779 GGATCTCAATACAAAGTTCTCCCC 58.873 45.833 0.00 0.00 0.00 4.81
86 87 4.569719 TCTCAATACAAAGTTCTCCCCC 57.430 45.455 0.00 0.00 0.00 5.40
87 88 4.175962 TCTCAATACAAAGTTCTCCCCCT 58.824 43.478 0.00 0.00 0.00 4.79
88 89 4.225267 TCTCAATACAAAGTTCTCCCCCTC 59.775 45.833 0.00 0.00 0.00 4.30
89 90 4.175962 TCAATACAAAGTTCTCCCCCTCT 58.824 43.478 0.00 0.00 0.00 3.69
90 91 4.225267 TCAATACAAAGTTCTCCCCCTCTC 59.775 45.833 0.00 0.00 0.00 3.20
91 92 2.424684 ACAAAGTTCTCCCCCTCTCT 57.575 50.000 0.00 0.00 0.00 3.10
92 93 2.261729 ACAAAGTTCTCCCCCTCTCTC 58.738 52.381 0.00 0.00 0.00 3.20
93 94 1.205893 CAAAGTTCTCCCCCTCTCTCG 59.794 57.143 0.00 0.00 0.00 4.04
94 95 0.410270 AAGTTCTCCCCCTCTCTCGT 59.590 55.000 0.00 0.00 0.00 4.18
95 96 0.323908 AGTTCTCCCCCTCTCTCGTG 60.324 60.000 0.00 0.00 0.00 4.35
96 97 1.000486 TTCTCCCCCTCTCTCGTGG 60.000 63.158 0.00 0.00 0.00 4.94
97 98 1.506907 TTCTCCCCCTCTCTCGTGGA 61.507 60.000 0.00 0.00 0.00 4.02
98 99 1.454847 CTCCCCCTCTCTCGTGGAG 60.455 68.421 0.00 0.00 43.12 3.86
108 109 4.074627 TCTCTCGTGGAGATCTATTCGT 57.925 45.455 0.00 0.00 45.20 3.85
109 110 3.810386 TCTCTCGTGGAGATCTATTCGTG 59.190 47.826 0.00 2.26 45.20 4.35
110 111 3.542648 TCTCGTGGAGATCTATTCGTGT 58.457 45.455 0.00 0.00 33.35 4.49
111 112 4.700700 TCTCGTGGAGATCTATTCGTGTA 58.299 43.478 0.00 0.00 33.35 2.90
112 113 5.121105 TCTCGTGGAGATCTATTCGTGTAA 58.879 41.667 0.00 0.00 33.35 2.41
113 114 5.763698 TCTCGTGGAGATCTATTCGTGTAAT 59.236 40.000 0.00 0.00 33.35 1.89
114 115 5.998553 TCGTGGAGATCTATTCGTGTAATC 58.001 41.667 0.00 0.00 0.00 1.75
115 116 5.763698 TCGTGGAGATCTATTCGTGTAATCT 59.236 40.000 0.00 0.00 0.00 2.40
116 117 6.262496 TCGTGGAGATCTATTCGTGTAATCTT 59.738 38.462 0.00 0.00 0.00 2.40
117 118 6.579292 CGTGGAGATCTATTCGTGTAATCTTC 59.421 42.308 0.00 0.00 0.00 2.87
118 119 7.520776 CGTGGAGATCTATTCGTGTAATCTTCT 60.521 40.741 0.00 0.00 0.00 2.85
119 120 8.138712 GTGGAGATCTATTCGTGTAATCTTCTT 58.861 37.037 0.00 0.00 0.00 2.52
120 121 8.696374 TGGAGATCTATTCGTGTAATCTTCTTT 58.304 33.333 0.00 0.00 0.00 2.52
121 122 9.535878 GGAGATCTATTCGTGTAATCTTCTTTT 57.464 33.333 0.00 0.00 0.00 2.27
124 125 9.427127 GATCTATTCGTGTAATCTTCTTTTTGC 57.573 33.333 0.00 0.00 0.00 3.68
125 126 7.453034 TCTATTCGTGTAATCTTCTTTTTGCG 58.547 34.615 0.00 0.00 0.00 4.85
126 127 4.398549 TCGTGTAATCTTCTTTTTGCGG 57.601 40.909 0.00 0.00 0.00 5.69
127 128 3.810941 TCGTGTAATCTTCTTTTTGCGGT 59.189 39.130 0.00 0.00 0.00 5.68
128 129 3.906008 CGTGTAATCTTCTTTTTGCGGTG 59.094 43.478 0.00 0.00 0.00 4.94
129 130 4.553938 CGTGTAATCTTCTTTTTGCGGTGT 60.554 41.667 0.00 0.00 0.00 4.16
130 131 4.675114 GTGTAATCTTCTTTTTGCGGTGTG 59.325 41.667 0.00 0.00 0.00 3.82
131 132 4.336993 TGTAATCTTCTTTTTGCGGTGTGT 59.663 37.500 0.00 0.00 0.00 3.72
132 133 4.385358 AATCTTCTTTTTGCGGTGTGTT 57.615 36.364 0.00 0.00 0.00 3.32
133 134 3.859411 TCTTCTTTTTGCGGTGTGTTT 57.141 38.095 0.00 0.00 0.00 2.83
134 135 3.506810 TCTTCTTTTTGCGGTGTGTTTG 58.493 40.909 0.00 0.00 0.00 2.93
135 136 3.057174 TCTTCTTTTTGCGGTGTGTTTGT 60.057 39.130 0.00 0.00 0.00 2.83
136 137 3.305398 TCTTTTTGCGGTGTGTTTGTT 57.695 38.095 0.00 0.00 0.00 2.83
137 138 2.989840 TCTTTTTGCGGTGTGTTTGTTG 59.010 40.909 0.00 0.00 0.00 3.33
138 139 2.724977 TTTTGCGGTGTGTTTGTTGA 57.275 40.000 0.00 0.00 0.00 3.18
139 140 2.270275 TTTGCGGTGTGTTTGTTGAG 57.730 45.000 0.00 0.00 0.00 3.02
140 141 1.454201 TTGCGGTGTGTTTGTTGAGA 58.546 45.000 0.00 0.00 0.00 3.27
141 142 0.730265 TGCGGTGTGTTTGTTGAGAC 59.270 50.000 0.00 0.00 0.00 3.36
142 143 0.028902 GCGGTGTGTTTGTTGAGACC 59.971 55.000 0.00 0.00 0.00 3.85
143 144 0.303493 CGGTGTGTTTGTTGAGACCG 59.697 55.000 0.00 0.00 40.29 4.79
144 145 1.658994 GGTGTGTTTGTTGAGACCGA 58.341 50.000 0.00 0.00 0.00 4.69
145 146 2.218603 GGTGTGTTTGTTGAGACCGAT 58.781 47.619 0.00 0.00 0.00 4.18
146 147 2.032030 GGTGTGTTTGTTGAGACCGATG 60.032 50.000 0.00 0.00 0.00 3.84
147 148 2.869801 GTGTGTTTGTTGAGACCGATGA 59.130 45.455 0.00 0.00 0.00 2.92
148 149 3.311322 GTGTGTTTGTTGAGACCGATGAA 59.689 43.478 0.00 0.00 0.00 2.57
149 150 4.024048 GTGTGTTTGTTGAGACCGATGAAT 60.024 41.667 0.00 0.00 0.00 2.57
150 151 4.578516 TGTGTTTGTTGAGACCGATGAATT 59.421 37.500 0.00 0.00 0.00 2.17
151 152 4.911610 GTGTTTGTTGAGACCGATGAATTG 59.088 41.667 0.00 0.00 0.00 2.32
152 153 4.578516 TGTTTGTTGAGACCGATGAATTGT 59.421 37.500 0.00 0.00 0.00 2.71
153 154 4.747540 TTGTTGAGACCGATGAATTGTG 57.252 40.909 0.00 0.00 0.00 3.33
154 155 3.073678 TGTTGAGACCGATGAATTGTGG 58.926 45.455 0.00 0.00 0.00 4.17
155 156 2.401583 TGAGACCGATGAATTGTGGG 57.598 50.000 0.00 0.00 0.00 4.61
156 157 1.628340 TGAGACCGATGAATTGTGGGT 59.372 47.619 0.00 0.00 0.00 4.51
157 158 2.039746 TGAGACCGATGAATTGTGGGTT 59.960 45.455 0.00 0.00 0.00 4.11
158 159 3.081804 GAGACCGATGAATTGTGGGTTT 58.918 45.455 0.00 0.00 0.00 3.27
159 160 4.258543 GAGACCGATGAATTGTGGGTTTA 58.741 43.478 0.00 0.00 0.00 2.01
160 161 4.855340 AGACCGATGAATTGTGGGTTTAT 58.145 39.130 0.00 0.00 0.00 1.40
161 162 4.640201 AGACCGATGAATTGTGGGTTTATG 59.360 41.667 0.00 0.00 0.00 1.90
162 163 4.594970 ACCGATGAATTGTGGGTTTATGA 58.405 39.130 0.00 0.00 0.00 2.15
163 164 5.200483 ACCGATGAATTGTGGGTTTATGAT 58.800 37.500 0.00 0.00 0.00 2.45
164 165 5.299279 ACCGATGAATTGTGGGTTTATGATC 59.701 40.000 0.00 0.00 0.00 2.92
165 166 5.299028 CCGATGAATTGTGGGTTTATGATCA 59.701 40.000 0.00 0.00 0.00 2.92
166 167 6.183360 CCGATGAATTGTGGGTTTATGATCAA 60.183 38.462 0.00 0.00 0.00 2.57
167 168 6.914215 CGATGAATTGTGGGTTTATGATCAAG 59.086 38.462 0.00 0.00 0.00 3.02
168 169 7.415541 CGATGAATTGTGGGTTTATGATCAAGT 60.416 37.037 0.00 0.00 0.00 3.16
169 170 7.156876 TGAATTGTGGGTTTATGATCAAGTC 57.843 36.000 0.00 0.00 32.90 3.01
170 171 6.947733 TGAATTGTGGGTTTATGATCAAGTCT 59.052 34.615 0.00 0.00 33.27 3.24
171 172 8.106462 TGAATTGTGGGTTTATGATCAAGTCTA 58.894 33.333 0.00 0.00 33.27 2.59
172 173 9.125026 GAATTGTGGGTTTATGATCAAGTCTAT 57.875 33.333 0.00 0.00 30.76 1.98
173 174 8.682936 ATTGTGGGTTTATGATCAAGTCTATC 57.317 34.615 0.00 0.00 0.00 2.08
174 175 7.437713 TGTGGGTTTATGATCAAGTCTATCT 57.562 36.000 0.00 0.00 0.00 1.98
175 176 8.547481 TGTGGGTTTATGATCAAGTCTATCTA 57.453 34.615 0.00 0.00 0.00 1.98
176 177 9.159254 TGTGGGTTTATGATCAAGTCTATCTAT 57.841 33.333 0.00 0.00 0.00 1.98
177 178 9.429359 GTGGGTTTATGATCAAGTCTATCTATG 57.571 37.037 0.00 0.00 0.00 2.23
178 179 9.379770 TGGGTTTATGATCAAGTCTATCTATGA 57.620 33.333 0.00 0.00 0.00 2.15
234 235 7.701539 TGTATGATTGGTTATCTTTGCAAGT 57.298 32.000 0.00 0.00 34.17 3.16
235 236 7.761409 TGTATGATTGGTTATCTTTGCAAGTC 58.239 34.615 0.00 0.00 34.17 3.01
236 237 7.611467 TGTATGATTGGTTATCTTTGCAAGTCT 59.389 33.333 0.00 0.00 34.17 3.24
237 238 6.500684 TGATTGGTTATCTTTGCAAGTCTC 57.499 37.500 0.00 0.00 34.17 3.36
238 239 6.240894 TGATTGGTTATCTTTGCAAGTCTCT 58.759 36.000 0.00 0.00 34.17 3.10
239 240 6.716628 TGATTGGTTATCTTTGCAAGTCTCTT 59.283 34.615 0.00 0.00 34.17 2.85
240 241 6.560253 TTGGTTATCTTTGCAAGTCTCTTC 57.440 37.500 0.00 0.00 0.00 2.87
241 242 4.690748 TGGTTATCTTTGCAAGTCTCTTCG 59.309 41.667 0.00 0.00 0.00 3.79
242 243 4.929808 GGTTATCTTTGCAAGTCTCTTCGA 59.070 41.667 0.00 0.00 0.00 3.71
243 244 5.408604 GGTTATCTTTGCAAGTCTCTTCGAA 59.591 40.000 0.00 0.00 0.00 3.71
244 245 6.092807 GGTTATCTTTGCAAGTCTCTTCGAAT 59.907 38.462 0.00 0.00 0.00 3.34
245 246 7.361286 GGTTATCTTTGCAAGTCTCTTCGAATT 60.361 37.037 0.00 0.00 0.00 2.17
246 247 8.656849 GTTATCTTTGCAAGTCTCTTCGAATTA 58.343 33.333 0.00 0.00 0.00 1.40
247 248 7.856145 ATCTTTGCAAGTCTCTTCGAATTAT 57.144 32.000 0.00 0.00 0.00 1.28
248 249 7.295952 TCTTTGCAAGTCTCTTCGAATTATC 57.704 36.000 0.00 0.00 0.00 1.75
249 250 6.313905 TCTTTGCAAGTCTCTTCGAATTATCC 59.686 38.462 0.00 0.00 0.00 2.59
250 251 4.112634 TGCAAGTCTCTTCGAATTATCCG 58.887 43.478 0.00 0.00 0.00 4.18
251 252 4.113354 GCAAGTCTCTTCGAATTATCCGT 58.887 43.478 0.00 0.00 0.00 4.69
252 253 4.567159 GCAAGTCTCTTCGAATTATCCGTT 59.433 41.667 0.00 0.00 0.00 4.44
253 254 5.063564 GCAAGTCTCTTCGAATTATCCGTTT 59.936 40.000 0.00 0.00 0.00 3.60
254 255 6.470160 CAAGTCTCTTCGAATTATCCGTTTG 58.530 40.000 0.00 0.00 0.00 2.93
255 256 5.109903 AGTCTCTTCGAATTATCCGTTTGG 58.890 41.667 0.00 0.00 0.00 3.28
256 257 4.868734 GTCTCTTCGAATTATCCGTTTGGT 59.131 41.667 0.00 0.00 36.30 3.67
257 258 5.350640 GTCTCTTCGAATTATCCGTTTGGTT 59.649 40.000 0.00 0.00 36.30 3.67
258 259 5.935789 TCTCTTCGAATTATCCGTTTGGTTT 59.064 36.000 0.00 0.00 36.30 3.27
259 260 5.933790 TCTTCGAATTATCCGTTTGGTTTG 58.066 37.500 0.00 0.00 36.30 2.93
260 261 4.688511 TCGAATTATCCGTTTGGTTTGG 57.311 40.909 0.00 0.00 36.30 3.28
261 262 3.119779 TCGAATTATCCGTTTGGTTTGGC 60.120 43.478 0.00 0.00 36.30 4.52
262 263 3.517602 GAATTATCCGTTTGGTTTGGCC 58.482 45.455 0.00 0.00 36.30 5.36
284 285 5.803020 CAACTAGATTGGTAGTTCTTGCC 57.197 43.478 0.00 0.00 40.57 4.52
285 286 5.245531 CAACTAGATTGGTAGTTCTTGCCA 58.754 41.667 0.00 0.00 40.57 4.92
286 287 5.700402 ACTAGATTGGTAGTTCTTGCCAT 57.300 39.130 0.00 0.00 41.54 4.40
287 288 5.431765 ACTAGATTGGTAGTTCTTGCCATG 58.568 41.667 0.00 0.00 41.54 3.66
288 289 3.624777 AGATTGGTAGTTCTTGCCATGG 58.375 45.455 7.63 7.63 41.54 3.66
289 290 2.214376 TTGGTAGTTCTTGCCATGGG 57.786 50.000 15.13 0.00 41.54 4.00
290 291 1.367346 TGGTAGTTCTTGCCATGGGA 58.633 50.000 15.13 8.24 36.55 4.37
291 292 1.281867 TGGTAGTTCTTGCCATGGGAG 59.718 52.381 15.13 5.11 36.55 4.30
292 293 1.559682 GGTAGTTCTTGCCATGGGAGA 59.440 52.381 15.13 7.58 0.00 3.71
293 294 2.026262 GGTAGTTCTTGCCATGGGAGAA 60.026 50.000 15.13 13.23 0.00 2.87
294 295 2.503895 AGTTCTTGCCATGGGAGAAG 57.496 50.000 15.13 6.21 30.66 2.85
295 296 1.707427 AGTTCTTGCCATGGGAGAAGT 59.293 47.619 15.13 15.24 30.66 3.01
296 297 1.815003 GTTCTTGCCATGGGAGAAGTG 59.185 52.381 15.13 0.13 30.66 3.16
297 298 0.322816 TCTTGCCATGGGAGAAGTGC 60.323 55.000 15.13 0.00 0.00 4.40
298 299 0.323178 CTTGCCATGGGAGAAGTGCT 60.323 55.000 15.13 0.00 0.00 4.40
299 300 0.112995 TTGCCATGGGAGAAGTGCTT 59.887 50.000 15.13 0.00 0.00 3.91
300 301 0.991146 TGCCATGGGAGAAGTGCTTA 59.009 50.000 15.13 0.00 0.00 3.09
301 302 1.065199 TGCCATGGGAGAAGTGCTTAG 60.065 52.381 15.13 0.00 0.00 2.18
302 303 1.673168 CCATGGGAGAAGTGCTTAGC 58.327 55.000 2.85 0.00 0.00 3.09
303 304 1.211457 CCATGGGAGAAGTGCTTAGCT 59.789 52.381 2.85 0.00 0.00 3.32
304 305 2.356535 CCATGGGAGAAGTGCTTAGCTT 60.357 50.000 2.85 0.00 0.00 3.74
305 306 3.350833 CATGGGAGAAGTGCTTAGCTTT 58.649 45.455 5.60 0.00 0.00 3.51
306 307 2.783135 TGGGAGAAGTGCTTAGCTTTG 58.217 47.619 5.60 0.00 0.00 2.77
307 308 2.087646 GGGAGAAGTGCTTAGCTTTGG 58.912 52.381 5.60 0.00 0.00 3.28
308 309 2.087646 GGAGAAGTGCTTAGCTTTGGG 58.912 52.381 5.60 0.00 0.00 4.12
309 310 2.553247 GGAGAAGTGCTTAGCTTTGGGT 60.553 50.000 5.60 0.00 0.00 4.51
310 311 3.149981 GAGAAGTGCTTAGCTTTGGGTT 58.850 45.455 5.60 0.00 0.00 4.11
311 312 3.149981 AGAAGTGCTTAGCTTTGGGTTC 58.850 45.455 5.60 0.00 0.00 3.62
312 313 1.523758 AGTGCTTAGCTTTGGGTTCG 58.476 50.000 5.60 0.00 0.00 3.95
313 314 1.071699 AGTGCTTAGCTTTGGGTTCGA 59.928 47.619 5.60 0.00 0.00 3.71
314 315 2.084546 GTGCTTAGCTTTGGGTTCGAT 58.915 47.619 5.60 0.00 0.00 3.59
315 316 2.096013 GTGCTTAGCTTTGGGTTCGATC 59.904 50.000 5.60 0.00 0.00 3.69
316 317 2.027192 TGCTTAGCTTTGGGTTCGATCT 60.027 45.455 5.60 0.00 0.00 2.75
317 318 3.010420 GCTTAGCTTTGGGTTCGATCTT 58.990 45.455 0.00 0.00 0.00 2.40
318 319 3.181506 GCTTAGCTTTGGGTTCGATCTTG 60.182 47.826 0.00 0.00 0.00 3.02
319 320 1.168714 AGCTTTGGGTTCGATCTTGC 58.831 50.000 0.00 0.00 0.00 4.01
320 321 0.179189 GCTTTGGGTTCGATCTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
321 322 0.447801 CTTTGGGTTCGATCTTGCGG 59.552 55.000 0.00 0.00 0.00 5.69
322 323 0.250553 TTTGGGTTCGATCTTGCGGT 60.251 50.000 0.00 0.00 0.00 5.68
323 324 0.953471 TTGGGTTCGATCTTGCGGTG 60.953 55.000 0.00 0.00 0.00 4.94
324 325 1.375523 GGGTTCGATCTTGCGGTGT 60.376 57.895 0.00 0.00 0.00 4.16
325 326 0.953960 GGGTTCGATCTTGCGGTGTT 60.954 55.000 0.00 0.00 0.00 3.32
326 327 0.442699 GGTTCGATCTTGCGGTGTTC 59.557 55.000 0.00 0.00 0.00 3.18
327 328 1.429463 GTTCGATCTTGCGGTGTTCT 58.571 50.000 0.00 0.00 0.00 3.01
328 329 1.798813 GTTCGATCTTGCGGTGTTCTT 59.201 47.619 0.00 0.00 0.00 2.52
329 330 2.163818 TCGATCTTGCGGTGTTCTTT 57.836 45.000 0.00 0.00 0.00 2.52
330 331 2.066262 TCGATCTTGCGGTGTTCTTTC 58.934 47.619 0.00 0.00 0.00 2.62
331 332 1.128692 CGATCTTGCGGTGTTCTTTCC 59.871 52.381 0.00 0.00 0.00 3.13
332 333 1.468914 GATCTTGCGGTGTTCTTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
333 334 0.472471 TCTTGCGGTGTTCTTTCCCT 59.528 50.000 0.00 0.00 0.00 4.20
334 335 0.593128 CTTGCGGTGTTCTTTCCCTG 59.407 55.000 0.00 0.00 0.00 4.45
335 336 0.106918 TTGCGGTGTTCTTTCCCTGT 60.107 50.000 0.00 0.00 0.00 4.00
336 337 0.817634 TGCGGTGTTCTTTCCCTGTG 60.818 55.000 0.00 0.00 0.00 3.66
337 338 0.534203 GCGGTGTTCTTTCCCTGTGA 60.534 55.000 0.00 0.00 0.00 3.58
338 339 1.226746 CGGTGTTCTTTCCCTGTGAC 58.773 55.000 0.00 0.00 0.00 3.67
339 340 1.474320 CGGTGTTCTTTCCCTGTGACA 60.474 52.381 0.00 0.00 0.00 3.58
340 341 2.222027 GGTGTTCTTTCCCTGTGACAG 58.778 52.381 5.42 5.42 0.00 3.51
341 342 2.158813 GGTGTTCTTTCCCTGTGACAGA 60.159 50.000 15.33 0.00 32.44 3.41
342 343 3.541632 GTGTTCTTTCCCTGTGACAGAA 58.458 45.455 15.33 0.00 37.43 3.02
343 344 3.561725 GTGTTCTTTCCCTGTGACAGAAG 59.438 47.826 15.33 10.01 39.75 2.85
344 345 3.142174 GTTCTTTCCCTGTGACAGAAGG 58.858 50.000 15.33 7.89 39.75 3.46
348 349 3.160585 CCTGTGACAGAAGGGGCA 58.839 61.111 15.33 0.00 32.44 5.36
349 350 1.002868 CCTGTGACAGAAGGGGCAG 60.003 63.158 15.33 0.00 32.44 4.85
350 351 1.673665 CTGTGACAGAAGGGGCAGC 60.674 63.158 6.79 0.00 32.44 5.25
351 352 2.401699 CTGTGACAGAAGGGGCAGCA 62.402 60.000 6.79 0.00 32.44 4.41
352 353 1.228245 GTGACAGAAGGGGCAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
353 354 1.073722 TGACAGAAGGGGCAGCAAG 59.926 57.895 0.00 0.00 0.00 4.01
354 355 1.676967 GACAGAAGGGGCAGCAAGG 60.677 63.158 0.00 0.00 0.00 3.61
355 356 3.066814 CAGAAGGGGCAGCAAGGC 61.067 66.667 0.00 0.00 43.27 4.35
356 357 3.583380 AGAAGGGGCAGCAAGGCA 61.583 61.111 0.00 0.00 46.44 4.75
360 361 4.715523 GGGGCAGCAAGGCACGTA 62.716 66.667 0.00 0.00 46.44 3.57
361 362 2.438434 GGGCAGCAAGGCACGTAT 60.438 61.111 0.00 0.00 46.44 3.06
362 363 2.046285 GGGCAGCAAGGCACGTATT 61.046 57.895 0.00 0.00 46.44 1.89
363 364 1.137404 GGCAGCAAGGCACGTATTG 59.863 57.895 0.00 0.00 43.51 1.90
381 382 3.011085 GCATCATTGCCATCGAGGA 57.989 52.632 0.00 0.00 43.38 3.71
382 383 1.531423 GCATCATTGCCATCGAGGAT 58.469 50.000 0.00 0.00 43.38 3.24
383 384 2.703416 GCATCATTGCCATCGAGGATA 58.297 47.619 0.00 0.00 43.38 2.59
384 385 3.076621 GCATCATTGCCATCGAGGATAA 58.923 45.455 0.00 0.00 43.38 1.75
385 386 3.120060 GCATCATTGCCATCGAGGATAAC 60.120 47.826 0.00 0.00 43.38 1.89
386 387 3.836365 TCATTGCCATCGAGGATAACA 57.164 42.857 0.00 0.00 41.22 2.41
387 388 4.149511 TCATTGCCATCGAGGATAACAA 57.850 40.909 0.00 0.00 41.22 2.83
388 389 4.129380 TCATTGCCATCGAGGATAACAAG 58.871 43.478 0.00 0.00 41.22 3.16
389 390 3.904800 TTGCCATCGAGGATAACAAGA 57.095 42.857 0.00 0.00 41.22 3.02
390 391 4.422073 TTGCCATCGAGGATAACAAGAT 57.578 40.909 0.00 0.00 41.22 2.40
391 392 3.732212 TGCCATCGAGGATAACAAGATG 58.268 45.455 0.00 0.00 41.22 2.90
394 395 3.668447 CATCGAGGATAACAAGATGGGG 58.332 50.000 0.00 0.00 36.13 4.96
395 396 2.759355 TCGAGGATAACAAGATGGGGT 58.241 47.619 0.00 0.00 0.00 4.95
396 397 3.112263 TCGAGGATAACAAGATGGGGTT 58.888 45.455 0.00 0.00 0.00 4.11
397 398 3.521937 TCGAGGATAACAAGATGGGGTTT 59.478 43.478 0.00 0.00 0.00 3.27
398 399 4.717778 TCGAGGATAACAAGATGGGGTTTA 59.282 41.667 0.00 0.00 0.00 2.01
399 400 5.368523 TCGAGGATAACAAGATGGGGTTTAT 59.631 40.000 0.00 0.00 0.00 1.40
400 401 6.062095 CGAGGATAACAAGATGGGGTTTATT 58.938 40.000 0.00 0.00 0.00 1.40
401 402 6.546034 CGAGGATAACAAGATGGGGTTTATTT 59.454 38.462 0.00 0.00 0.00 1.40
402 403 7.255139 CGAGGATAACAAGATGGGGTTTATTTC 60.255 40.741 0.00 0.00 0.00 2.17
403 404 7.418378 AGGATAACAAGATGGGGTTTATTTCA 58.582 34.615 0.00 0.00 0.00 2.69
404 405 8.067488 AGGATAACAAGATGGGGTTTATTTCAT 58.933 33.333 0.00 0.00 0.00 2.57
405 406 9.362151 GGATAACAAGATGGGGTTTATTTCATA 57.638 33.333 0.00 0.00 0.00 2.15
626 632 3.379650 CCGGTTCGGTGCATAGAAT 57.620 52.632 9.50 0.00 42.73 2.40
950 970 2.158740 TCGAATTGTGAGTTGGGGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
963 983 3.715287 TGGGGTTCATAGTAGTAGTGCA 58.285 45.455 0.00 0.00 0.00 4.57
1378 1414 7.222161 TGAAAATGATGAGATGATGGAGGTAG 58.778 38.462 0.00 0.00 0.00 3.18
1466 3138 6.205464 ACTGGTGTGATCACTCAAGTAATTTG 59.795 38.462 28.43 14.24 43.41 2.32
1467 3139 5.048782 TGGTGTGATCACTCAAGTAATTTGC 60.049 40.000 25.55 6.91 43.41 3.68
1468 3140 5.048782 GGTGTGATCACTCAAGTAATTTGCA 60.049 40.000 25.55 0.00 43.41 4.08
1469 3141 6.082338 GTGTGATCACTCAAGTAATTTGCAG 58.918 40.000 25.55 0.00 40.98 4.41
1470 3142 5.764686 TGTGATCACTCAAGTAATTTGCAGT 59.235 36.000 25.55 0.00 36.70 4.40
1471 3143 6.073058 TGTGATCACTCAAGTAATTTGCAGTC 60.073 38.462 25.55 0.00 36.70 3.51
1472 3144 5.412594 TGATCACTCAAGTAATTTGCAGTCC 59.587 40.000 0.00 0.00 36.70 3.85
1473 3145 4.713553 TCACTCAAGTAATTTGCAGTCCA 58.286 39.130 0.00 0.00 36.70 4.02
1474 3146 4.756642 TCACTCAAGTAATTTGCAGTCCAG 59.243 41.667 0.00 0.00 36.70 3.86
1475 3147 4.516698 CACTCAAGTAATTTGCAGTCCAGT 59.483 41.667 0.00 0.00 36.70 4.00
1476 3148 5.009010 CACTCAAGTAATTTGCAGTCCAGTT 59.991 40.000 0.00 0.00 36.70 3.16
1477 3149 6.204688 CACTCAAGTAATTTGCAGTCCAGTTA 59.795 38.462 0.00 0.00 36.70 2.24
1478 3150 6.770785 ACTCAAGTAATTTGCAGTCCAGTTAA 59.229 34.615 0.00 0.00 36.70 2.01
1490 3175 3.327757 AGTCCAGTTAAGCCAGTTCATGA 59.672 43.478 0.00 0.00 0.00 3.07
1518 3203 2.260247 GCAAGTGGATGCAGAGCAA 58.740 52.632 0.00 0.00 43.62 3.91
1519 3204 0.170561 GCAAGTGGATGCAGAGCAAG 59.829 55.000 0.00 0.00 43.62 4.01
1520 3205 1.531423 CAAGTGGATGCAGAGCAAGT 58.469 50.000 0.00 0.00 43.62 3.16
1521 3206 1.199327 CAAGTGGATGCAGAGCAAGTG 59.801 52.381 0.00 0.00 43.62 3.16
1522 3207 0.322277 AGTGGATGCAGAGCAAGTGG 60.322 55.000 0.00 0.00 43.62 4.00
1523 3208 0.321919 GTGGATGCAGAGCAAGTGGA 60.322 55.000 0.00 0.00 43.62 4.02
1524 3209 0.622136 TGGATGCAGAGCAAGTGGAT 59.378 50.000 0.00 0.00 43.62 3.41
1525 3210 1.022735 GGATGCAGAGCAAGTGGATG 58.977 55.000 0.00 0.00 43.62 3.51
1526 3211 0.381089 GATGCAGAGCAAGTGGATGC 59.619 55.000 0.00 0.00 43.62 3.91
1532 3217 3.991999 GCAAGTGGATGCAGAGCA 58.008 55.556 0.00 0.00 45.70 4.26
1613 3352 3.817084 CCAACTCAAGCATCAAGTGAAGA 59.183 43.478 0.00 0.00 0.00 2.87
2397 7088 4.567116 GGATCATCATGCCACTCCACATAT 60.567 45.833 0.00 0.00 0.00 1.78
2660 7352 1.313812 CCTGTAAGCGACCGGAGACT 61.314 60.000 9.46 0.00 34.39 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.326880 AGGTAATAACTATGGCCCCGAAG 59.673 47.826 0.00 0.00 0.00 3.79
18 19 3.320129 AGGTAATAACTATGGCCCCGAA 58.680 45.455 0.00 0.00 0.00 4.30
19 20 2.980548 AGGTAATAACTATGGCCCCGA 58.019 47.619 0.00 0.00 0.00 5.14
20 21 4.091549 TCTAGGTAATAACTATGGCCCCG 58.908 47.826 0.00 0.00 0.00 5.73
21 22 5.104485 CCATCTAGGTAATAACTATGGCCCC 60.104 48.000 0.00 0.00 0.00 5.80
22 23 5.629366 GCCATCTAGGTAATAACTATGGCCC 60.629 48.000 17.33 0.00 39.21 5.80
23 24 5.189934 AGCCATCTAGGTAATAACTATGGCC 59.810 44.000 22.10 9.64 43.05 5.36
24 25 6.301169 AGCCATCTAGGTAATAACTATGGC 57.699 41.667 19.49 19.49 42.67 4.40
25 26 8.140112 AGAAGCCATCTAGGTAATAACTATGG 57.860 38.462 3.31 3.31 40.61 2.74
26 27 9.646427 GAAGAAGCCATCTAGGTAATAACTATG 57.354 37.037 0.00 0.00 37.42 2.23
27 28 9.608718 AGAAGAAGCCATCTAGGTAATAACTAT 57.391 33.333 0.00 0.00 37.42 2.12
28 29 9.080097 GAGAAGAAGCCATCTAGGTAATAACTA 57.920 37.037 0.00 0.00 37.42 2.24
29 30 7.787424 AGAGAAGAAGCCATCTAGGTAATAACT 59.213 37.037 0.00 0.00 37.42 2.24
30 31 7.958088 AGAGAAGAAGCCATCTAGGTAATAAC 58.042 38.462 0.00 0.00 37.42 1.89
31 32 8.007742 AGAGAGAAGAAGCCATCTAGGTAATAA 58.992 37.037 0.00 0.00 37.42 1.40
32 33 7.531317 AGAGAGAAGAAGCCATCTAGGTAATA 58.469 38.462 0.00 0.00 37.42 0.98
33 34 6.381250 AGAGAGAAGAAGCCATCTAGGTAAT 58.619 40.000 0.00 0.00 37.42 1.89
34 35 5.772004 AGAGAGAAGAAGCCATCTAGGTAA 58.228 41.667 0.00 0.00 37.42 2.85
35 36 5.396057 AGAGAGAAGAAGCCATCTAGGTA 57.604 43.478 0.00 0.00 37.42 3.08
36 37 4.264373 AGAGAGAAGAAGCCATCTAGGT 57.736 45.455 0.00 0.00 37.42 3.08
37 38 5.612725 AAAGAGAGAAGAAGCCATCTAGG 57.387 43.478 0.00 0.00 37.42 3.02
38 39 6.315891 CCAAAAAGAGAGAAGAAGCCATCTAG 59.684 42.308 0.00 0.00 37.42 2.43
39 40 6.013379 TCCAAAAAGAGAGAAGAAGCCATCTA 60.013 38.462 0.00 0.00 37.42 1.98
40 41 5.008980 CCAAAAAGAGAGAAGAAGCCATCT 58.991 41.667 0.00 0.00 41.32 2.90
41 42 5.006386 TCCAAAAAGAGAGAAGAAGCCATC 58.994 41.667 0.00 0.00 0.00 3.51
42 43 4.990526 TCCAAAAAGAGAGAAGAAGCCAT 58.009 39.130 0.00 0.00 0.00 4.40
43 44 4.437682 TCCAAAAAGAGAGAAGAAGCCA 57.562 40.909 0.00 0.00 0.00 4.75
44 45 5.252547 AGATCCAAAAAGAGAGAAGAAGCC 58.747 41.667 0.00 0.00 0.00 4.35
45 46 5.936956 TGAGATCCAAAAAGAGAGAAGAAGC 59.063 40.000 0.00 0.00 0.00 3.86
46 47 7.976135 TTGAGATCCAAAAAGAGAGAAGAAG 57.024 36.000 0.00 0.00 0.00 2.85
47 48 9.442047 GTATTGAGATCCAAAAAGAGAGAAGAA 57.558 33.333 1.49 0.00 38.43 2.52
48 49 8.597167 TGTATTGAGATCCAAAAAGAGAGAAGA 58.403 33.333 1.49 0.00 38.43 2.87
49 50 8.783833 TGTATTGAGATCCAAAAAGAGAGAAG 57.216 34.615 1.49 0.00 38.43 2.85
50 51 9.573166 TTTGTATTGAGATCCAAAAAGAGAGAA 57.427 29.630 1.49 0.00 38.43 2.87
51 52 9.224267 CTTTGTATTGAGATCCAAAAAGAGAGA 57.776 33.333 10.77 0.00 38.43 3.10
52 53 9.007901 ACTTTGTATTGAGATCCAAAAAGAGAG 57.992 33.333 17.36 9.12 38.43 3.20
53 54 8.924511 ACTTTGTATTGAGATCCAAAAAGAGA 57.075 30.769 17.36 0.00 38.43 3.10
54 55 9.617975 GAACTTTGTATTGAGATCCAAAAAGAG 57.382 33.333 17.36 9.24 38.43 2.85
55 56 9.354673 AGAACTTTGTATTGAGATCCAAAAAGA 57.645 29.630 17.36 3.11 38.43 2.52
56 57 9.617975 GAGAACTTTGTATTGAGATCCAAAAAG 57.382 33.333 12.87 12.87 38.43 2.27
57 58 8.576442 GGAGAACTTTGTATTGAGATCCAAAAA 58.424 33.333 1.49 0.00 38.43 1.94
58 59 7.176690 GGGAGAACTTTGTATTGAGATCCAAAA 59.823 37.037 1.49 0.00 38.43 2.44
59 60 6.659242 GGGAGAACTTTGTATTGAGATCCAAA 59.341 38.462 1.49 0.00 38.43 3.28
60 61 6.180472 GGGAGAACTTTGTATTGAGATCCAA 58.820 40.000 0.00 0.00 39.41 3.53
61 62 5.339200 GGGGAGAACTTTGTATTGAGATCCA 60.339 44.000 0.00 0.00 0.00 3.41
62 63 5.126779 GGGGAGAACTTTGTATTGAGATCC 58.873 45.833 0.00 0.00 0.00 3.36
63 64 5.104318 AGGGGGAGAACTTTGTATTGAGATC 60.104 44.000 0.00 0.00 0.00 2.75
64 65 4.790790 AGGGGGAGAACTTTGTATTGAGAT 59.209 41.667 0.00 0.00 0.00 2.75
65 66 4.175962 AGGGGGAGAACTTTGTATTGAGA 58.824 43.478 0.00 0.00 0.00 3.27
66 67 4.226168 AGAGGGGGAGAACTTTGTATTGAG 59.774 45.833 0.00 0.00 0.00 3.02
67 68 4.175962 AGAGGGGGAGAACTTTGTATTGA 58.824 43.478 0.00 0.00 0.00 2.57
68 69 4.226168 AGAGAGGGGGAGAACTTTGTATTG 59.774 45.833 0.00 0.00 0.00 1.90
69 70 4.439860 AGAGAGGGGGAGAACTTTGTATT 58.560 43.478 0.00 0.00 0.00 1.89
70 71 4.034410 GAGAGAGGGGGAGAACTTTGTAT 58.966 47.826 0.00 0.00 0.00 2.29
71 72 3.442076 GAGAGAGGGGGAGAACTTTGTA 58.558 50.000 0.00 0.00 0.00 2.41
72 73 2.261729 GAGAGAGGGGGAGAACTTTGT 58.738 52.381 0.00 0.00 0.00 2.83
73 74 1.205893 CGAGAGAGGGGGAGAACTTTG 59.794 57.143 0.00 0.00 0.00 2.77
74 75 1.203199 ACGAGAGAGGGGGAGAACTTT 60.203 52.381 0.00 0.00 0.00 2.66
75 76 0.410270 ACGAGAGAGGGGGAGAACTT 59.590 55.000 0.00 0.00 0.00 2.66
76 77 0.323908 CACGAGAGAGGGGGAGAACT 60.324 60.000 0.00 0.00 0.00 3.01
77 78 1.324005 CCACGAGAGAGGGGGAGAAC 61.324 65.000 0.00 0.00 38.28 3.01
78 79 1.000486 CCACGAGAGAGGGGGAGAA 60.000 63.158 0.00 0.00 38.28 2.87
79 80 1.927569 CTCCACGAGAGAGGGGGAGA 61.928 65.000 4.03 0.00 46.38 3.71
80 81 1.454847 CTCCACGAGAGAGGGGGAG 60.455 68.421 0.00 0.00 46.50 4.30
81 82 2.684104 CTCCACGAGAGAGGGGGA 59.316 66.667 0.00 0.00 46.50 4.81
88 89 3.562141 ACACGAATAGATCTCCACGAGAG 59.438 47.826 17.64 0.00 42.26 3.20
89 90 3.542648 ACACGAATAGATCTCCACGAGA 58.457 45.455 17.64 0.00 43.20 4.04
90 91 3.972950 ACACGAATAGATCTCCACGAG 57.027 47.619 17.64 13.53 0.00 4.18
91 92 5.763698 AGATTACACGAATAGATCTCCACGA 59.236 40.000 17.64 0.00 0.00 4.35
92 93 6.003234 AGATTACACGAATAGATCTCCACG 57.997 41.667 0.00 6.16 0.00 4.94
93 94 7.653647 AGAAGATTACACGAATAGATCTCCAC 58.346 38.462 0.00 0.00 0.00 4.02
94 95 7.825331 AGAAGATTACACGAATAGATCTCCA 57.175 36.000 0.00 0.00 0.00 3.86
95 96 9.535878 AAAAGAAGATTACACGAATAGATCTCC 57.464 33.333 0.00 0.00 0.00 3.71
98 99 9.427127 GCAAAAAGAAGATTACACGAATAGATC 57.573 33.333 0.00 0.00 0.00 2.75
99 100 8.116753 CGCAAAAAGAAGATTACACGAATAGAT 58.883 33.333 0.00 0.00 0.00 1.98
100 101 7.412563 CCGCAAAAAGAAGATTACACGAATAGA 60.413 37.037 0.00 0.00 0.00 1.98
101 102 6.682863 CCGCAAAAAGAAGATTACACGAATAG 59.317 38.462 0.00 0.00 0.00 1.73
102 103 6.148150 ACCGCAAAAAGAAGATTACACGAATA 59.852 34.615 0.00 0.00 0.00 1.75
103 104 5.048991 ACCGCAAAAAGAAGATTACACGAAT 60.049 36.000 0.00 0.00 0.00 3.34
104 105 4.273969 ACCGCAAAAAGAAGATTACACGAA 59.726 37.500 0.00 0.00 0.00 3.85
105 106 3.810941 ACCGCAAAAAGAAGATTACACGA 59.189 39.130 0.00 0.00 0.00 4.35
106 107 3.906008 CACCGCAAAAAGAAGATTACACG 59.094 43.478 0.00 0.00 0.00 4.49
107 108 4.675114 CACACCGCAAAAAGAAGATTACAC 59.325 41.667 0.00 0.00 0.00 2.90
108 109 4.336993 ACACACCGCAAAAAGAAGATTACA 59.663 37.500 0.00 0.00 0.00 2.41
109 110 4.855531 ACACACCGCAAAAAGAAGATTAC 58.144 39.130 0.00 0.00 0.00 1.89
110 111 5.508200 AACACACCGCAAAAAGAAGATTA 57.492 34.783 0.00 0.00 0.00 1.75
111 112 4.385358 AACACACCGCAAAAAGAAGATT 57.615 36.364 0.00 0.00 0.00 2.40
112 113 4.111916 CAAACACACCGCAAAAAGAAGAT 58.888 39.130 0.00 0.00 0.00 2.40
113 114 3.057174 ACAAACACACCGCAAAAAGAAGA 60.057 39.130 0.00 0.00 0.00 2.87
114 115 3.249917 ACAAACACACCGCAAAAAGAAG 58.750 40.909 0.00 0.00 0.00 2.85
115 116 3.305398 ACAAACACACCGCAAAAAGAA 57.695 38.095 0.00 0.00 0.00 2.52
116 117 2.989840 CAACAAACACACCGCAAAAAGA 59.010 40.909 0.00 0.00 0.00 2.52
117 118 2.989840 TCAACAAACACACCGCAAAAAG 59.010 40.909 0.00 0.00 0.00 2.27
118 119 2.989840 CTCAACAAACACACCGCAAAAA 59.010 40.909 0.00 0.00 0.00 1.94
119 120 2.229062 TCTCAACAAACACACCGCAAAA 59.771 40.909 0.00 0.00 0.00 2.44
120 121 1.813178 TCTCAACAAACACACCGCAAA 59.187 42.857 0.00 0.00 0.00 3.68
121 122 1.131504 GTCTCAACAAACACACCGCAA 59.868 47.619 0.00 0.00 0.00 4.85
122 123 0.730265 GTCTCAACAAACACACCGCA 59.270 50.000 0.00 0.00 0.00 5.69
123 124 0.028902 GGTCTCAACAAACACACCGC 59.971 55.000 0.00 0.00 0.00 5.68
124 125 0.303493 CGGTCTCAACAAACACACCG 59.697 55.000 0.00 0.00 40.73 4.94
125 126 1.658994 TCGGTCTCAACAAACACACC 58.341 50.000 0.00 0.00 0.00 4.16
126 127 2.869801 TCATCGGTCTCAACAAACACAC 59.130 45.455 0.00 0.00 0.00 3.82
127 128 3.186702 TCATCGGTCTCAACAAACACA 57.813 42.857 0.00 0.00 0.00 3.72
128 129 4.749245 ATTCATCGGTCTCAACAAACAC 57.251 40.909 0.00 0.00 0.00 3.32
129 130 4.578516 ACAATTCATCGGTCTCAACAAACA 59.421 37.500 0.00 0.00 0.00 2.83
130 131 4.911610 CACAATTCATCGGTCTCAACAAAC 59.088 41.667 0.00 0.00 0.00 2.93
131 132 4.023279 CCACAATTCATCGGTCTCAACAAA 60.023 41.667 0.00 0.00 0.00 2.83
132 133 3.501828 CCACAATTCATCGGTCTCAACAA 59.498 43.478 0.00 0.00 0.00 2.83
133 134 3.073678 CCACAATTCATCGGTCTCAACA 58.926 45.455 0.00 0.00 0.00 3.33
134 135 2.420022 CCCACAATTCATCGGTCTCAAC 59.580 50.000 0.00 0.00 0.00 3.18
135 136 2.039746 ACCCACAATTCATCGGTCTCAA 59.960 45.455 0.00 0.00 0.00 3.02
136 137 1.628340 ACCCACAATTCATCGGTCTCA 59.372 47.619 0.00 0.00 0.00 3.27
137 138 2.403252 ACCCACAATTCATCGGTCTC 57.597 50.000 0.00 0.00 0.00 3.36
138 139 2.879103 AACCCACAATTCATCGGTCT 57.121 45.000 0.00 0.00 0.00 3.85
139 140 4.638421 TCATAAACCCACAATTCATCGGTC 59.362 41.667 0.00 0.00 0.00 4.79
140 141 4.594970 TCATAAACCCACAATTCATCGGT 58.405 39.130 0.00 0.00 0.00 4.69
141 142 5.299028 TGATCATAAACCCACAATTCATCGG 59.701 40.000 0.00 0.00 0.00 4.18
142 143 6.375945 TGATCATAAACCCACAATTCATCG 57.624 37.500 0.00 0.00 0.00 3.84
143 144 7.775120 ACTTGATCATAAACCCACAATTCATC 58.225 34.615 0.00 0.00 0.00 2.92
144 145 7.616935 AGACTTGATCATAAACCCACAATTCAT 59.383 33.333 0.00 0.00 0.00 2.57
145 146 6.947733 AGACTTGATCATAAACCCACAATTCA 59.052 34.615 0.00 0.00 0.00 2.57
146 147 7.396540 AGACTTGATCATAAACCCACAATTC 57.603 36.000 0.00 0.00 0.00 2.17
147 148 9.125026 GATAGACTTGATCATAAACCCACAATT 57.875 33.333 0.00 0.00 0.00 2.32
148 149 8.497745 AGATAGACTTGATCATAAACCCACAAT 58.502 33.333 0.00 0.00 0.00 2.71
149 150 7.861629 AGATAGACTTGATCATAAACCCACAA 58.138 34.615 0.00 0.00 0.00 3.33
150 151 7.437713 AGATAGACTTGATCATAAACCCACA 57.562 36.000 0.00 0.00 0.00 4.17
151 152 9.429359 CATAGATAGACTTGATCATAAACCCAC 57.571 37.037 0.00 0.00 0.00 4.61
152 153 9.379770 TCATAGATAGACTTGATCATAAACCCA 57.620 33.333 0.00 0.00 0.00 4.51
217 218 8.381207 TTCGAAGAGACTTGCAAAGATAACCAA 61.381 37.037 0.00 0.00 43.32 3.67
218 219 6.962567 TTCGAAGAGACTTGCAAAGATAACCA 60.963 38.462 0.00 0.00 43.32 3.67
219 220 5.408604 TTCGAAGAGACTTGCAAAGATAACC 59.591 40.000 0.00 0.00 43.32 2.85
220 221 6.467723 TTCGAAGAGACTTGCAAAGATAAC 57.532 37.500 0.00 0.00 43.32 1.89
221 222 7.672983 AATTCGAAGAGACTTGCAAAGATAA 57.327 32.000 3.35 0.00 43.32 1.75
222 223 8.948631 ATAATTCGAAGAGACTTGCAAAGATA 57.051 30.769 3.35 0.00 43.32 1.98
223 224 7.011857 GGATAATTCGAAGAGACTTGCAAAGAT 59.988 37.037 3.35 0.00 43.32 2.40
224 225 6.313905 GGATAATTCGAAGAGACTTGCAAAGA 59.686 38.462 3.35 0.00 43.32 2.52
225 226 6.481984 GGATAATTCGAAGAGACTTGCAAAG 58.518 40.000 3.35 0.00 45.61 2.77
226 227 5.063438 CGGATAATTCGAAGAGACTTGCAAA 59.937 40.000 3.35 0.00 38.43 3.68
227 228 4.566759 CGGATAATTCGAAGAGACTTGCAA 59.433 41.667 3.35 0.00 38.43 4.08
228 229 4.112634 CGGATAATTCGAAGAGACTTGCA 58.887 43.478 3.35 0.00 38.43 4.08
229 230 4.113354 ACGGATAATTCGAAGAGACTTGC 58.887 43.478 3.35 0.00 38.43 4.01
230 231 6.455646 CCAAACGGATAATTCGAAGAGACTTG 60.456 42.308 3.35 0.26 38.43 3.16
231 232 5.581085 CCAAACGGATAATTCGAAGAGACTT 59.419 40.000 3.35 0.00 38.43 3.01
232 233 5.109903 CCAAACGGATAATTCGAAGAGACT 58.890 41.667 3.35 0.00 38.43 3.24
233 234 4.868734 ACCAAACGGATAATTCGAAGAGAC 59.131 41.667 3.35 0.00 38.43 3.36
234 235 5.080969 ACCAAACGGATAATTCGAAGAGA 57.919 39.130 3.35 0.00 38.43 3.10
235 236 5.796350 AACCAAACGGATAATTCGAAGAG 57.204 39.130 3.35 0.00 38.43 2.85
236 237 5.106475 CCAAACCAAACGGATAATTCGAAGA 60.106 40.000 3.35 0.00 0.00 2.87
237 238 5.092781 CCAAACCAAACGGATAATTCGAAG 58.907 41.667 3.35 0.00 0.00 3.79
238 239 4.616373 GCCAAACCAAACGGATAATTCGAA 60.616 41.667 0.00 0.00 0.00 3.71
239 240 3.119779 GCCAAACCAAACGGATAATTCGA 60.120 43.478 0.00 0.00 0.00 3.71
240 241 3.175929 GCCAAACCAAACGGATAATTCG 58.824 45.455 0.00 0.00 0.00 3.34
241 242 3.517602 GGCCAAACCAAACGGATAATTC 58.482 45.455 0.00 0.00 38.86 2.17
242 243 3.603158 GGCCAAACCAAACGGATAATT 57.397 42.857 0.00 0.00 38.86 1.40
262 263 5.245531 TGGCAAGAACTACCAATCTAGTTG 58.754 41.667 0.00 0.00 37.13 3.16
263 264 5.499004 TGGCAAGAACTACCAATCTAGTT 57.501 39.130 0.00 0.00 39.26 2.24
264 265 5.431765 CATGGCAAGAACTACCAATCTAGT 58.568 41.667 0.00 0.00 36.94 2.57
265 266 4.818546 CCATGGCAAGAACTACCAATCTAG 59.181 45.833 0.00 0.00 36.94 2.43
266 267 4.385199 CCCATGGCAAGAACTACCAATCTA 60.385 45.833 6.09 0.00 36.94 1.98
267 268 3.624777 CCATGGCAAGAACTACCAATCT 58.375 45.455 0.00 0.00 36.94 2.40
268 269 2.689983 CCCATGGCAAGAACTACCAATC 59.310 50.000 6.09 0.00 36.94 2.67
269 270 2.311542 TCCCATGGCAAGAACTACCAAT 59.688 45.455 6.09 0.00 36.94 3.16
270 271 1.707989 TCCCATGGCAAGAACTACCAA 59.292 47.619 6.09 0.00 36.94 3.67
271 272 1.281867 CTCCCATGGCAAGAACTACCA 59.718 52.381 6.09 0.00 37.99 3.25
272 273 1.559682 TCTCCCATGGCAAGAACTACC 59.440 52.381 6.09 0.00 0.00 3.18
273 274 3.274288 CTTCTCCCATGGCAAGAACTAC 58.726 50.000 18.81 0.00 0.00 2.73
274 275 2.912956 ACTTCTCCCATGGCAAGAACTA 59.087 45.455 18.81 4.96 0.00 2.24
275 276 1.707427 ACTTCTCCCATGGCAAGAACT 59.293 47.619 18.81 10.75 0.00 3.01
276 277 1.815003 CACTTCTCCCATGGCAAGAAC 59.185 52.381 18.81 0.00 0.00 3.01
277 278 1.887956 GCACTTCTCCCATGGCAAGAA 60.888 52.381 20.51 20.51 0.00 2.52
278 279 0.322816 GCACTTCTCCCATGGCAAGA 60.323 55.000 18.42 14.64 0.00 3.02
279 280 0.323178 AGCACTTCTCCCATGGCAAG 60.323 55.000 6.09 10.26 0.00 4.01
280 281 0.112995 AAGCACTTCTCCCATGGCAA 59.887 50.000 6.09 0.00 0.00 4.52
281 282 0.991146 TAAGCACTTCTCCCATGGCA 59.009 50.000 6.09 0.00 0.00 4.92
282 283 1.673168 CTAAGCACTTCTCCCATGGC 58.327 55.000 6.09 0.00 0.00 4.40
283 284 1.211457 AGCTAAGCACTTCTCCCATGG 59.789 52.381 4.14 4.14 0.00 3.66
284 285 2.706339 AGCTAAGCACTTCTCCCATG 57.294 50.000 0.00 0.00 0.00 3.66
285 286 3.350833 CAAAGCTAAGCACTTCTCCCAT 58.649 45.455 0.00 0.00 0.00 4.00
286 287 2.553028 CCAAAGCTAAGCACTTCTCCCA 60.553 50.000 0.00 0.00 0.00 4.37
287 288 2.087646 CCAAAGCTAAGCACTTCTCCC 58.912 52.381 0.00 0.00 0.00 4.30
288 289 2.087646 CCCAAAGCTAAGCACTTCTCC 58.912 52.381 0.00 0.00 0.00 3.71
289 290 2.784347 ACCCAAAGCTAAGCACTTCTC 58.216 47.619 0.00 0.00 0.00 2.87
290 291 2.959465 ACCCAAAGCTAAGCACTTCT 57.041 45.000 0.00 0.00 0.00 2.85
291 292 2.095718 CGAACCCAAAGCTAAGCACTTC 60.096 50.000 0.00 0.00 0.00 3.01
292 293 1.880027 CGAACCCAAAGCTAAGCACTT 59.120 47.619 0.00 0.00 0.00 3.16
293 294 1.071699 TCGAACCCAAAGCTAAGCACT 59.928 47.619 0.00 0.00 0.00 4.40
294 295 1.519408 TCGAACCCAAAGCTAAGCAC 58.481 50.000 0.00 0.00 0.00 4.40
295 296 2.027192 AGATCGAACCCAAAGCTAAGCA 60.027 45.455 0.00 0.00 0.00 3.91
296 297 2.633488 AGATCGAACCCAAAGCTAAGC 58.367 47.619 0.00 0.00 0.00 3.09
297 298 3.181506 GCAAGATCGAACCCAAAGCTAAG 60.182 47.826 0.00 0.00 0.00 2.18
298 299 2.747446 GCAAGATCGAACCCAAAGCTAA 59.253 45.455 0.00 0.00 0.00 3.09
299 300 2.356135 GCAAGATCGAACCCAAAGCTA 58.644 47.619 0.00 0.00 0.00 3.32
300 301 1.168714 GCAAGATCGAACCCAAAGCT 58.831 50.000 0.00 0.00 0.00 3.74
301 302 0.179189 CGCAAGATCGAACCCAAAGC 60.179 55.000 0.00 0.00 43.02 3.51
302 303 0.447801 CCGCAAGATCGAACCCAAAG 59.552 55.000 0.00 0.00 43.02 2.77
303 304 0.250553 ACCGCAAGATCGAACCCAAA 60.251 50.000 0.00 0.00 43.02 3.28
304 305 0.953471 CACCGCAAGATCGAACCCAA 60.953 55.000 0.00 0.00 43.02 4.12
305 306 1.375396 CACCGCAAGATCGAACCCA 60.375 57.895 0.00 0.00 43.02 4.51
306 307 0.953960 AACACCGCAAGATCGAACCC 60.954 55.000 0.00 0.00 43.02 4.11
307 308 0.442699 GAACACCGCAAGATCGAACC 59.557 55.000 0.00 0.00 43.02 3.62
308 309 1.429463 AGAACACCGCAAGATCGAAC 58.571 50.000 0.00 0.00 43.02 3.95
309 310 2.163818 AAGAACACCGCAAGATCGAA 57.836 45.000 0.00 0.00 43.02 3.71
310 311 2.066262 GAAAGAACACCGCAAGATCGA 58.934 47.619 0.00 0.00 43.02 3.59
311 312 1.128692 GGAAAGAACACCGCAAGATCG 59.871 52.381 0.00 0.00 43.02 3.69
312 313 1.468914 GGGAAAGAACACCGCAAGATC 59.531 52.381 0.00 0.00 43.02 2.75
313 314 1.073923 AGGGAAAGAACACCGCAAGAT 59.926 47.619 0.00 0.00 43.02 2.40
314 315 0.472471 AGGGAAAGAACACCGCAAGA 59.528 50.000 0.00 0.00 43.02 3.02
315 316 0.593128 CAGGGAAAGAACACCGCAAG 59.407 55.000 0.00 0.00 0.00 4.01
316 317 0.106918 ACAGGGAAAGAACACCGCAA 60.107 50.000 0.00 0.00 0.00 4.85
317 318 0.817634 CACAGGGAAAGAACACCGCA 60.818 55.000 0.00 0.00 0.00 5.69
318 319 0.534203 TCACAGGGAAAGAACACCGC 60.534 55.000 0.00 0.00 0.00 5.68
319 320 1.226746 GTCACAGGGAAAGAACACCG 58.773 55.000 0.00 0.00 0.00 4.94
320 321 2.158813 TCTGTCACAGGGAAAGAACACC 60.159 50.000 4.57 0.00 36.92 4.16
321 322 3.194005 TCTGTCACAGGGAAAGAACAC 57.806 47.619 4.57 0.00 36.92 3.32
322 323 3.433598 CCTTCTGTCACAGGGAAAGAACA 60.434 47.826 4.57 0.00 43.48 3.18
323 324 3.142174 CCTTCTGTCACAGGGAAAGAAC 58.858 50.000 4.57 0.00 43.48 3.01
324 325 3.492102 CCTTCTGTCACAGGGAAAGAA 57.508 47.619 4.57 5.11 45.62 2.52
331 332 1.002868 CTGCCCCTTCTGTCACAGG 60.003 63.158 4.57 0.00 31.51 4.00
332 333 1.673665 GCTGCCCCTTCTGTCACAG 60.674 63.158 0.00 0.00 0.00 3.66
333 334 1.993701 TTGCTGCCCCTTCTGTCACA 61.994 55.000 0.00 0.00 0.00 3.58
334 335 1.228245 TTGCTGCCCCTTCTGTCAC 60.228 57.895 0.00 0.00 0.00 3.67
335 336 1.073722 CTTGCTGCCCCTTCTGTCA 59.926 57.895 0.00 0.00 0.00 3.58
336 337 1.676967 CCTTGCTGCCCCTTCTGTC 60.677 63.158 0.00 0.00 0.00 3.51
337 338 2.437897 CCTTGCTGCCCCTTCTGT 59.562 61.111 0.00 0.00 0.00 3.41
338 339 3.066814 GCCTTGCTGCCCCTTCTG 61.067 66.667 0.00 0.00 0.00 3.02
339 340 3.583380 TGCCTTGCTGCCCCTTCT 61.583 61.111 0.00 0.00 0.00 2.85
340 341 3.376918 GTGCCTTGCTGCCCCTTC 61.377 66.667 0.00 0.00 0.00 3.46
343 344 3.995506 ATACGTGCCTTGCTGCCCC 62.996 63.158 0.00 0.00 0.00 5.80
344 345 2.046285 AATACGTGCCTTGCTGCCC 61.046 57.895 0.00 0.00 0.00 5.36
345 346 1.137404 CAATACGTGCCTTGCTGCC 59.863 57.895 0.00 0.00 0.00 4.85
346 347 4.771684 CAATACGTGCCTTGCTGC 57.228 55.556 0.00 0.00 0.00 5.25
364 365 4.067192 TGTTATCCTCGATGGCAATGATG 58.933 43.478 0.00 0.00 35.26 3.07
365 366 4.356405 TGTTATCCTCGATGGCAATGAT 57.644 40.909 0.00 0.00 35.26 2.45
366 367 3.836365 TGTTATCCTCGATGGCAATGA 57.164 42.857 0.00 0.00 35.26 2.57
367 368 4.129380 TCTTGTTATCCTCGATGGCAATG 58.871 43.478 0.00 0.00 35.26 2.82
368 369 4.422073 TCTTGTTATCCTCGATGGCAAT 57.578 40.909 0.00 0.00 35.26 3.56
369 370 3.904800 TCTTGTTATCCTCGATGGCAA 57.095 42.857 0.00 0.00 35.26 4.52
370 371 3.494924 CCATCTTGTTATCCTCGATGGCA 60.495 47.826 0.00 0.00 43.05 4.92
371 372 3.070018 CCATCTTGTTATCCTCGATGGC 58.930 50.000 0.00 0.00 43.05 4.40
372 373 3.557898 CCCCATCTTGTTATCCTCGATGG 60.558 52.174 9.11 9.11 46.69 3.51
373 374 3.071602 ACCCCATCTTGTTATCCTCGATG 59.928 47.826 0.00 0.00 33.16 3.84
374 375 3.318313 ACCCCATCTTGTTATCCTCGAT 58.682 45.455 0.00 0.00 0.00 3.59
375 376 2.759355 ACCCCATCTTGTTATCCTCGA 58.241 47.619 0.00 0.00 0.00 4.04
376 377 3.560636 AACCCCATCTTGTTATCCTCG 57.439 47.619 0.00 0.00 0.00 4.63
377 378 7.559897 TGAAATAAACCCCATCTTGTTATCCTC 59.440 37.037 0.00 0.00 0.00 3.71
378 379 7.418378 TGAAATAAACCCCATCTTGTTATCCT 58.582 34.615 0.00 0.00 0.00 3.24
379 380 7.654022 TGAAATAAACCCCATCTTGTTATCC 57.346 36.000 0.00 0.00 0.00 2.59
383 384 8.485392 CCAATATGAAATAAACCCCATCTTGTT 58.515 33.333 0.00 0.00 29.06 2.83
384 385 7.843760 TCCAATATGAAATAAACCCCATCTTGT 59.156 33.333 0.00 0.00 29.06 3.16
385 386 8.248904 TCCAATATGAAATAAACCCCATCTTG 57.751 34.615 0.00 0.00 29.06 3.02
386 387 8.852671 TTCCAATATGAAATAAACCCCATCTT 57.147 30.769 0.00 0.00 29.06 2.40
387 388 8.852671 TTTCCAATATGAAATAAACCCCATCT 57.147 30.769 0.00 0.00 29.06 2.90
388 389 9.898152 TTTTTCCAATATGAAATAAACCCCATC 57.102 29.630 0.00 0.00 34.41 3.51
389 390 9.904198 CTTTTTCCAATATGAAATAAACCCCAT 57.096 29.630 0.00 0.00 34.41 4.00
390 391 8.885346 ACTTTTTCCAATATGAAATAAACCCCA 58.115 29.630 0.00 0.00 34.41 4.96
391 392 9.378551 GACTTTTTCCAATATGAAATAAACCCC 57.621 33.333 0.00 0.00 34.41 4.95
392 393 9.378551 GGACTTTTTCCAATATGAAATAAACCC 57.621 33.333 0.00 0.00 45.10 4.11
950 970 4.023980 TCACTTGCCTGCACTACTACTAT 58.976 43.478 0.00 0.00 0.00 2.12
1378 1414 3.943381 TCAGGTTCATCATCAGCATCAAC 59.057 43.478 0.00 0.00 0.00 3.18
1466 3138 1.807142 GAACTGGCTTAACTGGACTGC 59.193 52.381 0.00 0.00 0.00 4.40
1467 3139 3.126001 TGAACTGGCTTAACTGGACTG 57.874 47.619 0.00 0.00 0.00 3.51
1468 3140 3.327757 TCATGAACTGGCTTAACTGGACT 59.672 43.478 0.00 0.00 0.00 3.85
1469 3141 3.674997 TCATGAACTGGCTTAACTGGAC 58.325 45.455 0.00 0.00 0.00 4.02
1470 3142 4.365514 TTCATGAACTGGCTTAACTGGA 57.634 40.909 3.38 0.00 0.00 3.86
1471 3143 4.761739 TCTTTCATGAACTGGCTTAACTGG 59.238 41.667 7.89 0.00 0.00 4.00
1472 3144 5.947228 TCTTTCATGAACTGGCTTAACTG 57.053 39.130 7.89 0.00 0.00 3.16
1473 3145 6.299141 TCTTCTTTCATGAACTGGCTTAACT 58.701 36.000 7.89 0.00 0.00 2.24
1474 3146 6.560253 TCTTCTTTCATGAACTGGCTTAAC 57.440 37.500 7.89 0.00 0.00 2.01
1475 3147 6.207417 CCTTCTTCTTTCATGAACTGGCTTAA 59.793 38.462 7.89 0.00 0.00 1.85
1476 3148 5.707298 CCTTCTTCTTTCATGAACTGGCTTA 59.293 40.000 7.89 0.00 0.00 3.09
1477 3149 4.522022 CCTTCTTCTTTCATGAACTGGCTT 59.478 41.667 7.89 0.00 0.00 4.35
1478 3150 4.077822 CCTTCTTCTTTCATGAACTGGCT 58.922 43.478 7.89 0.00 0.00 4.75
1490 3175 2.560105 GCATCCACTTGCCTTCTTCTTT 59.440 45.455 0.00 0.00 36.60 2.52
1518 3203 0.322277 CCACTTGCTCTGCATCCACT 60.322 55.000 0.00 0.00 38.76 4.00
1519 3204 0.321919 TCCACTTGCTCTGCATCCAC 60.322 55.000 0.00 0.00 38.76 4.02
1520 3205 0.401356 TTCCACTTGCTCTGCATCCA 59.599 50.000 0.00 0.00 38.76 3.41
1521 3206 1.093159 CTTCCACTTGCTCTGCATCC 58.907 55.000 0.00 0.00 38.76 3.51
1522 3207 0.450983 GCTTCCACTTGCTCTGCATC 59.549 55.000 0.00 0.00 38.76 3.91
1523 3208 0.251033 TGCTTCCACTTGCTCTGCAT 60.251 50.000 0.00 0.00 38.76 3.96
1524 3209 0.887836 CTGCTTCCACTTGCTCTGCA 60.888 55.000 0.00 0.00 36.47 4.41
1525 3210 0.604780 TCTGCTTCCACTTGCTCTGC 60.605 55.000 0.00 0.00 0.00 4.26
1526 3211 1.440708 CTCTGCTTCCACTTGCTCTG 58.559 55.000 0.00 0.00 0.00 3.35
1527 3212 0.321475 GCTCTGCTTCCACTTGCTCT 60.321 55.000 0.00 0.00 0.00 4.09
1528 3213 0.604780 TGCTCTGCTTCCACTTGCTC 60.605 55.000 0.00 0.00 0.00 4.26
1529 3214 0.179009 TTGCTCTGCTTCCACTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
1530 3215 0.240411 CTTGCTCTGCTTCCACTTGC 59.760 55.000 0.00 0.00 0.00 4.01
1531 3216 1.266175 CACTTGCTCTGCTTCCACTTG 59.734 52.381 0.00 0.00 0.00 3.16
1532 3217 1.602311 CACTTGCTCTGCTTCCACTT 58.398 50.000 0.00 0.00 0.00 3.16
1984 6665 4.019792 ACATGTGTTCTGGCAGTCAATA 57.980 40.909 15.27 8.34 0.00 1.90
2308 6998 0.391263 GTGTGGAGGCTAAAGGGTCG 60.391 60.000 0.00 0.00 0.00 4.79
2397 7088 2.509131 TGAATAGCATGGTGGATGTGGA 59.491 45.455 7.89 0.00 34.14 4.02
2660 7352 1.879575 AGGAGGGACATGGATTCGAA 58.120 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.