Multiple sequence alignment - TraesCS1A01G167900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G167900 chr1A 100.000 2534 0 0 1 2534 300671635 300674168 0.000000e+00 4680
1 TraesCS1A01G167900 chr1A 87.701 1431 104 32 419 1841 300576465 300577831 0.000000e+00 1602
2 TraesCS1A01G167900 chr1A 90.548 529 44 1 1023 1551 300944104 300944626 0.000000e+00 695
3 TraesCS1A01G167900 chr1A 95.547 247 8 1 1 244 42526138 42525892 2.360000e-105 392
4 TraesCS1A01G167900 chr1B 93.544 1580 51 24 292 1841 331083328 331084886 0.000000e+00 2305
5 TraesCS1A01G167900 chr1B 90.430 1024 70 13 832 1841 330991305 330992314 0.000000e+00 1323
6 TraesCS1A01G167900 chr1B 91.731 520 36 4 1032 1550 331363528 331364041 0.000000e+00 715
7 TraesCS1A01G167900 chr1B 94.332 247 11 1 1 244 639053828 639054074 2.380000e-100 375
8 TraesCS1A01G167900 chr1B 93.522 247 13 1 1 244 623682597 623682843 5.150000e-97 364
9 TraesCS1A01G167900 chr1B 85.251 339 33 9 419 756 330990948 330991270 1.450000e-87 333
10 TraesCS1A01G167900 chr1B 90.650 246 20 3 1 244 340977017 340977261 8.740000e-85 324
11 TraesCS1A01G167900 chr1B 91.304 138 9 1 1940 2077 331084958 331085092 4.300000e-43 185
12 TraesCS1A01G167900 chr1B 95.385 65 3 0 243 307 331072448 331072512 1.240000e-18 104
13 TraesCS1A01G167900 chr1D 92.905 1494 44 9 243 1728 246971382 246969943 0.000000e+00 2115
14 TraesCS1A01G167900 chr1D 87.282 1431 112 30 419 1844 247123878 247122513 0.000000e+00 1570
15 TraesCS1A01G167900 chr1D 91.154 520 39 4 1032 1550 246679934 246679421 0.000000e+00 699
16 TraesCS1A01G167900 chr1D 87.654 324 17 10 1889 2210 246969816 246969514 3.100000e-94 355
17 TraesCS1A01G167900 chr1D 86.822 258 25 5 2282 2534 246969301 246969048 1.920000e-71 279
18 TraesCS1A01G167900 chr1D 94.574 129 4 2 1713 1841 246969927 246969802 1.990000e-46 196
19 TraesCS1A01G167900 chr5A 81.077 687 79 23 893 1553 491301796 491302457 3.760000e-138 501
20 TraesCS1A01G167900 chr5D 80.630 635 77 24 935 1553 388109727 388110331 1.380000e-122 449
21 TraesCS1A01G167900 chr2A 96.356 247 6 1 1 244 209203520 209203766 1.090000e-108 403
22 TraesCS1A01G167900 chr6B 90.625 256 12 3 1 244 30805801 30806056 1.880000e-86 329
23 TraesCS1A01G167900 chr6B 90.588 255 13 2 1 244 30639097 30639351 6.760000e-86 327
24 TraesCS1A01G167900 chr6B 90.234 256 13 3 1 244 30726833 30727088 8.740000e-85 324
25 TraesCS1A01G167900 chr6B 90.234 256 13 3 1 244 30871149 30871404 8.740000e-85 324
26 TraesCS1A01G167900 chr6B 78.947 228 36 6 500 718 116106832 116107056 7.310000e-31 145
27 TraesCS1A01G167900 chr6D 78.696 230 37 6 498 718 46860966 46861192 2.630000e-30 143
28 TraesCS1A01G167900 chr6A 78.919 185 34 4 498 680 60492453 60492634 1.230000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G167900 chr1A 300671635 300674168 2533 False 4680.00 4680 100.00000 1 2534 1 chr1A.!!$F2 2533
1 TraesCS1A01G167900 chr1A 300576465 300577831 1366 False 1602.00 1602 87.70100 419 1841 1 chr1A.!!$F1 1422
2 TraesCS1A01G167900 chr1A 300944104 300944626 522 False 695.00 695 90.54800 1023 1551 1 chr1A.!!$F3 528
3 TraesCS1A01G167900 chr1B 331083328 331085092 1764 False 1245.00 2305 92.42400 292 2077 2 chr1B.!!$F7 1785
4 TraesCS1A01G167900 chr1B 330990948 330992314 1366 False 828.00 1323 87.84050 419 1841 2 chr1B.!!$F6 1422
5 TraesCS1A01G167900 chr1B 331363528 331364041 513 False 715.00 715 91.73100 1032 1550 1 chr1B.!!$F2 518
6 TraesCS1A01G167900 chr1D 247122513 247123878 1365 True 1570.00 1570 87.28200 419 1844 1 chr1D.!!$R2 1425
7 TraesCS1A01G167900 chr1D 246969048 246971382 2334 True 736.25 2115 90.48875 243 2534 4 chr1D.!!$R3 2291
8 TraesCS1A01G167900 chr1D 246679421 246679934 513 True 699.00 699 91.15400 1032 1550 1 chr1D.!!$R1 518
9 TraesCS1A01G167900 chr5A 491301796 491302457 661 False 501.00 501 81.07700 893 1553 1 chr5A.!!$F1 660
10 TraesCS1A01G167900 chr5D 388109727 388110331 604 False 449.00 449 80.63000 935 1553 1 chr5D.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.042431 AATGCCCCACCAAATAGCCA 59.958 50.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2025 0.249657 CAGGCCTGGTTAGCGATCTC 60.25 60.0 26.14 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.366671 CAAAAAGTGCTAGTTACAGAGTTACT 57.633 34.615 0.00 0.00 30.49 2.24
36 37 3.111853 CAGAGTTACTGTGCAAGGTGA 57.888 47.619 0.00 0.00 41.30 4.02
37 38 3.466836 CAGAGTTACTGTGCAAGGTGAA 58.533 45.455 0.00 0.00 41.30 3.18
38 39 3.876914 CAGAGTTACTGTGCAAGGTGAAA 59.123 43.478 0.00 0.00 41.30 2.69
39 40 4.024556 CAGAGTTACTGTGCAAGGTGAAAG 60.025 45.833 0.00 0.00 41.30 2.62
40 41 4.127171 GAGTTACTGTGCAAGGTGAAAGA 58.873 43.478 0.00 0.00 0.00 2.52
41 42 4.523083 AGTTACTGTGCAAGGTGAAAGAA 58.477 39.130 0.00 0.00 0.00 2.52
42 43 4.947388 AGTTACTGTGCAAGGTGAAAGAAA 59.053 37.500 0.00 0.00 0.00 2.52
43 44 5.066505 AGTTACTGTGCAAGGTGAAAGAAAG 59.933 40.000 0.00 0.00 0.00 2.62
44 45 2.689983 ACTGTGCAAGGTGAAAGAAAGG 59.310 45.455 0.00 0.00 0.00 3.11
45 46 2.951642 CTGTGCAAGGTGAAAGAAAGGA 59.048 45.455 0.00 0.00 0.00 3.36
46 47 3.360867 TGTGCAAGGTGAAAGAAAGGAA 58.639 40.909 0.00 0.00 0.00 3.36
47 48 3.766591 TGTGCAAGGTGAAAGAAAGGAAA 59.233 39.130 0.00 0.00 0.00 3.13
48 49 4.142182 TGTGCAAGGTGAAAGAAAGGAAAG 60.142 41.667 0.00 0.00 0.00 2.62
49 50 4.097892 GTGCAAGGTGAAAGAAAGGAAAGA 59.902 41.667 0.00 0.00 0.00 2.52
50 51 4.339247 TGCAAGGTGAAAGAAAGGAAAGAG 59.661 41.667 0.00 0.00 0.00 2.85
51 52 4.580580 GCAAGGTGAAAGAAAGGAAAGAGA 59.419 41.667 0.00 0.00 0.00 3.10
52 53 5.067805 GCAAGGTGAAAGAAAGGAAAGAGAA 59.932 40.000 0.00 0.00 0.00 2.87
53 54 6.405842 GCAAGGTGAAAGAAAGGAAAGAGAAA 60.406 38.462 0.00 0.00 0.00 2.52
54 55 7.547227 CAAGGTGAAAGAAAGGAAAGAGAAAA 58.453 34.615 0.00 0.00 0.00 2.29
55 56 7.718334 AGGTGAAAGAAAGGAAAGAGAAAAA 57.282 32.000 0.00 0.00 0.00 1.94
56 57 7.776107 AGGTGAAAGAAAGGAAAGAGAAAAAG 58.224 34.615 0.00 0.00 0.00 2.27
57 58 6.980978 GGTGAAAGAAAGGAAAGAGAAAAAGG 59.019 38.462 0.00 0.00 0.00 3.11
58 59 7.147897 GGTGAAAGAAAGGAAAGAGAAAAAGGA 60.148 37.037 0.00 0.00 0.00 3.36
59 60 8.251026 GTGAAAGAAAGGAAAGAGAAAAAGGAA 58.749 33.333 0.00 0.00 0.00 3.36
60 61 8.811994 TGAAAGAAAGGAAAGAGAAAAAGGAAA 58.188 29.630 0.00 0.00 0.00 3.13
61 62 9.823647 GAAAGAAAGGAAAGAGAAAAAGGAAAT 57.176 29.630 0.00 0.00 0.00 2.17
68 69 9.987272 AGGAAAGAGAAAAAGGAAATTACATTG 57.013 29.630 0.00 0.00 0.00 2.82
69 70 8.712363 GGAAAGAGAAAAAGGAAATTACATTGC 58.288 33.333 0.00 0.00 0.00 3.56
70 71 8.607441 AAAGAGAAAAAGGAAATTACATTGCC 57.393 30.769 0.00 0.00 38.34 4.52
71 72 7.301868 AGAGAAAAAGGAAATTACATTGCCA 57.698 32.000 0.00 0.00 40.74 4.92
72 73 7.381323 AGAGAAAAAGGAAATTACATTGCCAG 58.619 34.615 0.00 0.00 40.74 4.85
73 74 7.233348 AGAGAAAAAGGAAATTACATTGCCAGA 59.767 33.333 0.00 0.00 40.74 3.86
74 75 7.734942 AGAAAAAGGAAATTACATTGCCAGAA 58.265 30.769 0.00 0.00 40.74 3.02
75 76 8.210265 AGAAAAAGGAAATTACATTGCCAGAAA 58.790 29.630 0.00 0.00 40.74 2.52
76 77 7.728847 AAAAGGAAATTACATTGCCAGAAAC 57.271 32.000 0.00 0.00 40.74 2.78
77 78 6.418057 AAGGAAATTACATTGCCAGAAACA 57.582 33.333 0.00 0.00 40.74 2.83
78 79 5.783111 AGGAAATTACATTGCCAGAAACAC 58.217 37.500 0.00 0.00 40.74 3.32
79 80 5.539955 AGGAAATTACATTGCCAGAAACACT 59.460 36.000 0.00 0.00 40.74 3.55
80 81 5.863935 GGAAATTACATTGCCAGAAACACTC 59.136 40.000 0.00 0.00 37.93 3.51
81 82 6.294731 GGAAATTACATTGCCAGAAACACTCT 60.295 38.462 0.00 0.00 37.93 3.24
82 83 5.886960 ATTACATTGCCAGAAACACTCTC 57.113 39.130 0.00 0.00 29.07 3.20
83 84 3.498774 ACATTGCCAGAAACACTCTCT 57.501 42.857 0.00 0.00 29.07 3.10
84 85 3.825328 ACATTGCCAGAAACACTCTCTT 58.175 40.909 0.00 0.00 29.07 2.85
85 86 4.973168 ACATTGCCAGAAACACTCTCTTA 58.027 39.130 0.00 0.00 29.07 2.10
86 87 5.376625 ACATTGCCAGAAACACTCTCTTAA 58.623 37.500 0.00 0.00 29.07 1.85
87 88 5.239525 ACATTGCCAGAAACACTCTCTTAAC 59.760 40.000 0.00 0.00 29.07 2.01
88 89 3.740115 TGCCAGAAACACTCTCTTAACC 58.260 45.455 0.00 0.00 29.07 2.85
89 90 3.135712 TGCCAGAAACACTCTCTTAACCA 59.864 43.478 0.00 0.00 29.07 3.67
90 91 4.202461 TGCCAGAAACACTCTCTTAACCAT 60.202 41.667 0.00 0.00 29.07 3.55
91 92 4.154918 GCCAGAAACACTCTCTTAACCATG 59.845 45.833 0.00 0.00 29.07 3.66
92 93 5.551233 CCAGAAACACTCTCTTAACCATGA 58.449 41.667 0.00 0.00 29.07 3.07
93 94 6.176183 CCAGAAACACTCTCTTAACCATGAT 58.824 40.000 0.00 0.00 29.07 2.45
94 95 6.314896 CCAGAAACACTCTCTTAACCATGATC 59.685 42.308 0.00 0.00 29.07 2.92
95 96 7.102346 CAGAAACACTCTCTTAACCATGATCT 58.898 38.462 0.00 0.00 29.07 2.75
96 97 7.277539 CAGAAACACTCTCTTAACCATGATCTC 59.722 40.741 0.00 0.00 29.07 2.75
97 98 5.606348 ACACTCTCTTAACCATGATCTCC 57.394 43.478 0.00 0.00 0.00 3.71
98 99 4.407296 ACACTCTCTTAACCATGATCTCCC 59.593 45.833 0.00 0.00 0.00 4.30
99 100 4.406972 CACTCTCTTAACCATGATCTCCCA 59.593 45.833 0.00 0.00 0.00 4.37
100 101 4.653341 ACTCTCTTAACCATGATCTCCCAG 59.347 45.833 0.00 0.00 0.00 4.45
101 102 3.389329 TCTCTTAACCATGATCTCCCAGC 59.611 47.826 0.00 0.00 0.00 4.85
102 103 2.439507 TCTTAACCATGATCTCCCAGCC 59.560 50.000 0.00 0.00 0.00 4.85
103 104 1.891933 TAACCATGATCTCCCAGCCA 58.108 50.000 0.00 0.00 0.00 4.75
104 105 1.229131 AACCATGATCTCCCAGCCAT 58.771 50.000 0.00 0.00 0.00 4.40
105 106 1.229131 ACCATGATCTCCCAGCCATT 58.771 50.000 0.00 0.00 0.00 3.16
106 107 1.133575 ACCATGATCTCCCAGCCATTG 60.134 52.381 0.00 0.00 0.00 2.82
107 108 1.133575 CCATGATCTCCCAGCCATTGT 60.134 52.381 0.00 0.00 0.00 2.71
108 109 1.954382 CATGATCTCCCAGCCATTGTG 59.046 52.381 0.00 0.00 0.00 3.33
109 110 0.394762 TGATCTCCCAGCCATTGTGC 60.395 55.000 0.00 0.00 0.00 4.57
110 111 0.394762 GATCTCCCAGCCATTGTGCA 60.395 55.000 0.00 0.00 0.00 4.57
111 112 0.682209 ATCTCCCAGCCATTGTGCAC 60.682 55.000 10.75 10.75 0.00 4.57
112 113 2.283101 TCCCAGCCATTGTGCACC 60.283 61.111 15.69 0.00 0.00 5.01
113 114 3.384532 CCCAGCCATTGTGCACCC 61.385 66.667 15.69 0.00 0.00 4.61
114 115 2.283388 CCAGCCATTGTGCACCCT 60.283 61.111 15.69 0.00 0.00 4.34
115 116 1.909781 CCAGCCATTGTGCACCCTT 60.910 57.895 15.69 0.00 0.00 3.95
116 117 1.290955 CAGCCATTGTGCACCCTTG 59.709 57.895 15.69 8.99 0.00 3.61
117 118 1.153524 AGCCATTGTGCACCCTTGA 59.846 52.632 15.69 0.00 0.00 3.02
118 119 0.896940 AGCCATTGTGCACCCTTGAG 60.897 55.000 15.69 4.95 0.00 3.02
119 120 1.880819 GCCATTGTGCACCCTTGAGG 61.881 60.000 15.69 8.77 43.78 3.86
120 121 1.588082 CATTGTGCACCCTTGAGGC 59.412 57.895 15.69 0.00 40.58 4.70
121 122 1.607467 ATTGTGCACCCTTGAGGCC 60.607 57.895 15.69 0.00 40.58 5.19
122 123 2.370459 ATTGTGCACCCTTGAGGCCA 62.370 55.000 15.69 0.00 40.58 5.36
123 124 2.674380 GTGCACCCTTGAGGCCAG 60.674 66.667 5.22 0.00 40.58 4.85
124 125 4.666253 TGCACCCTTGAGGCCAGC 62.666 66.667 5.01 0.00 40.58 4.85
125 126 4.666253 GCACCCTTGAGGCCAGCA 62.666 66.667 5.01 0.00 40.58 4.41
126 127 2.360852 CACCCTTGAGGCCAGCAG 60.361 66.667 5.01 0.00 40.58 4.24
127 128 2.856000 ACCCTTGAGGCCAGCAGT 60.856 61.111 5.01 0.00 40.58 4.40
128 129 2.045536 CCCTTGAGGCCAGCAGTC 60.046 66.667 5.01 0.00 0.00 3.51
129 130 2.045536 CCTTGAGGCCAGCAGTCC 60.046 66.667 5.01 0.00 0.00 3.85
130 131 2.752358 CTTGAGGCCAGCAGTCCA 59.248 61.111 5.01 0.00 0.00 4.02
131 132 1.673665 CTTGAGGCCAGCAGTCCAC 60.674 63.158 5.01 0.00 0.00 4.02
132 133 3.196207 TTGAGGCCAGCAGTCCACC 62.196 63.158 5.01 0.00 0.00 4.61
133 134 3.640407 GAGGCCAGCAGTCCACCA 61.640 66.667 5.01 0.00 0.00 4.17
134 135 3.177884 AGGCCAGCAGTCCACCAA 61.178 61.111 5.01 0.00 0.00 3.67
135 136 2.674380 GGCCAGCAGTCCACCAAG 60.674 66.667 0.00 0.00 0.00 3.61
136 137 2.113986 GCCAGCAGTCCACCAAGT 59.886 61.111 0.00 0.00 0.00 3.16
137 138 2.263741 GCCAGCAGTCCACCAAGTG 61.264 63.158 0.00 0.00 0.00 3.16
138 139 2.263741 CCAGCAGTCCACCAAGTGC 61.264 63.158 0.00 0.00 44.35 4.40
140 141 4.030452 GCAGTCCACCAAGTGCGC 62.030 66.667 0.00 0.00 35.99 6.09
141 142 2.591429 CAGTCCACCAAGTGCGCA 60.591 61.111 5.66 5.66 31.34 6.09
142 143 2.281070 AGTCCACCAAGTGCGCAG 60.281 61.111 12.22 0.12 31.34 5.18
157 158 0.567968 CGCAGCTCGAGTACAATTCG 59.432 55.000 15.13 4.84 41.67 3.34
158 159 1.794076 CGCAGCTCGAGTACAATTCGA 60.794 52.381 15.13 5.69 44.05 3.71
159 160 2.464865 GCAGCTCGAGTACAATTCGAT 58.535 47.619 15.13 0.00 45.00 3.59
160 161 2.469516 GCAGCTCGAGTACAATTCGATC 59.530 50.000 15.13 3.04 45.00 3.69
161 162 3.695816 CAGCTCGAGTACAATTCGATCA 58.304 45.455 15.13 0.00 45.00 2.92
162 163 3.483922 CAGCTCGAGTACAATTCGATCAC 59.516 47.826 15.13 1.00 45.00 3.06
163 164 3.128764 AGCTCGAGTACAATTCGATCACA 59.871 43.478 15.13 0.00 45.00 3.58
164 165 3.857665 GCTCGAGTACAATTCGATCACAA 59.142 43.478 15.13 0.00 45.00 3.33
165 166 4.326278 GCTCGAGTACAATTCGATCACAAA 59.674 41.667 15.13 0.00 45.00 2.83
166 167 5.005779 GCTCGAGTACAATTCGATCACAAAT 59.994 40.000 15.13 0.00 45.00 2.32
167 168 6.198403 GCTCGAGTACAATTCGATCACAAATA 59.802 38.462 15.13 0.00 45.00 1.40
168 169 7.096023 GCTCGAGTACAATTCGATCACAAATAT 60.096 37.037 15.13 0.00 45.00 1.28
169 170 8.642908 TCGAGTACAATTCGATCACAAATATT 57.357 30.769 1.90 0.00 41.68 1.28
170 171 9.093970 TCGAGTACAATTCGATCACAAATATTT 57.906 29.630 1.90 0.00 41.68 1.40
179 180 7.801716 TCGATCACAAATATTTAGAAAGGGG 57.198 36.000 0.00 0.00 0.00 4.79
180 181 7.570132 TCGATCACAAATATTTAGAAAGGGGA 58.430 34.615 0.00 0.00 0.00 4.81
181 182 8.050325 TCGATCACAAATATTTAGAAAGGGGAA 58.950 33.333 0.00 0.00 0.00 3.97
182 183 8.682710 CGATCACAAATATTTAGAAAGGGGAAA 58.317 33.333 0.00 0.00 0.00 3.13
197 198 9.948964 AGAAAGGGGAAAAATTTATGATTGAAG 57.051 29.630 0.00 0.00 0.00 3.02
198 199 9.942850 GAAAGGGGAAAAATTTATGATTGAAGA 57.057 29.630 0.00 0.00 0.00 2.87
200 201 9.895138 AAGGGGAAAAATTTATGATTGAAGATG 57.105 29.630 0.00 0.00 0.00 2.90
201 202 7.989170 AGGGGAAAAATTTATGATTGAAGATGC 59.011 33.333 0.00 0.00 0.00 3.91
202 203 7.042523 GGGGAAAAATTTATGATTGAAGATGCG 60.043 37.037 0.00 0.00 0.00 4.73
203 204 7.706179 GGGAAAAATTTATGATTGAAGATGCGA 59.294 33.333 0.00 0.00 0.00 5.10
204 205 9.252962 GGAAAAATTTATGATTGAAGATGCGAT 57.747 29.630 0.00 0.00 0.00 4.58
206 207 9.806203 AAAAATTTATGATTGAAGATGCGATCA 57.194 25.926 0.00 0.00 41.57 2.92
207 208 9.459640 AAAATTTATGATTGAAGATGCGATCAG 57.540 29.630 0.00 0.00 40.88 2.90
208 209 7.741027 ATTTATGATTGAAGATGCGATCAGT 57.259 32.000 0.00 0.00 40.88 3.41
209 210 7.558161 TTTATGATTGAAGATGCGATCAGTT 57.442 32.000 0.00 0.00 40.88 3.16
210 211 5.670149 ATGATTGAAGATGCGATCAGTTC 57.330 39.130 0.00 0.00 40.88 3.01
222 223 4.725556 CGATCAGTTCGTTCTTTCCAAA 57.274 40.909 0.00 0.00 43.01 3.28
223 224 5.283060 CGATCAGTTCGTTCTTTCCAAAT 57.717 39.130 0.00 0.00 43.01 2.32
224 225 5.082059 CGATCAGTTCGTTCTTTCCAAATG 58.918 41.667 0.00 0.00 43.01 2.32
225 226 4.223320 TCAGTTCGTTCTTTCCAAATGC 57.777 40.909 0.00 0.00 0.00 3.56
226 227 3.004315 TCAGTTCGTTCTTTCCAAATGCC 59.996 43.478 0.00 0.00 0.00 4.40
227 228 2.296190 AGTTCGTTCTTTCCAAATGCCC 59.704 45.455 0.00 0.00 0.00 5.36
228 229 1.253100 TCGTTCTTTCCAAATGCCCC 58.747 50.000 0.00 0.00 0.00 5.80
229 230 0.965439 CGTTCTTTCCAAATGCCCCA 59.035 50.000 0.00 0.00 0.00 4.96
230 231 1.336795 CGTTCTTTCCAAATGCCCCAC 60.337 52.381 0.00 0.00 0.00 4.61
231 232 1.001974 GTTCTTTCCAAATGCCCCACC 59.998 52.381 0.00 0.00 0.00 4.61
232 233 0.189574 TCTTTCCAAATGCCCCACCA 59.810 50.000 0.00 0.00 0.00 4.17
233 234 1.055040 CTTTCCAAATGCCCCACCAA 58.945 50.000 0.00 0.00 0.00 3.67
234 235 1.419387 CTTTCCAAATGCCCCACCAAA 59.581 47.619 0.00 0.00 0.00 3.28
235 236 1.739750 TTCCAAATGCCCCACCAAAT 58.260 45.000 0.00 0.00 0.00 2.32
236 237 2.630889 TCCAAATGCCCCACCAAATA 57.369 45.000 0.00 0.00 0.00 1.40
237 238 2.465813 TCCAAATGCCCCACCAAATAG 58.534 47.619 0.00 0.00 0.00 1.73
238 239 1.134431 CCAAATGCCCCACCAAATAGC 60.134 52.381 0.00 0.00 0.00 2.97
239 240 1.134431 CAAATGCCCCACCAAATAGCC 60.134 52.381 0.00 0.00 0.00 3.93
240 241 0.042431 AATGCCCCACCAAATAGCCA 59.958 50.000 0.00 0.00 0.00 4.75
241 242 0.265553 ATGCCCCACCAAATAGCCAT 59.734 50.000 0.00 0.00 0.00 4.40
543 568 3.947834 CGCTTGGATCCTGTAATTTCCTT 59.052 43.478 14.23 0.00 0.00 3.36
544 569 4.399303 CGCTTGGATCCTGTAATTTCCTTT 59.601 41.667 14.23 0.00 0.00 3.11
545 570 5.449177 CGCTTGGATCCTGTAATTTCCTTTC 60.449 44.000 14.23 0.00 0.00 2.62
546 571 5.163509 GCTTGGATCCTGTAATTTCCTTTCC 60.164 44.000 14.23 0.00 0.00 3.13
547 572 4.867086 TGGATCCTGTAATTTCCTTTCCC 58.133 43.478 14.23 0.00 0.00 3.97
548 573 4.544152 TGGATCCTGTAATTTCCTTTCCCT 59.456 41.667 14.23 0.00 0.00 4.20
549 574 4.889995 GGATCCTGTAATTTCCTTTCCCTG 59.110 45.833 3.84 0.00 0.00 4.45
550 575 4.316025 TCCTGTAATTTCCTTTCCCTGG 57.684 45.455 0.00 0.00 0.00 4.45
551 576 3.920197 TCCTGTAATTTCCTTTCCCTGGA 59.080 43.478 0.00 0.00 0.00 3.86
552 577 4.018415 TCCTGTAATTTCCTTTCCCTGGAG 60.018 45.833 0.00 0.00 34.76 3.86
553 578 4.018415 CCTGTAATTTCCTTTCCCTGGAGA 60.018 45.833 0.00 0.00 34.76 3.71
554 579 5.516591 CCTGTAATTTCCTTTCCCTGGAGAA 60.517 44.000 0.00 0.00 34.76 2.87
555 580 5.570320 TGTAATTTCCTTTCCCTGGAGAAG 58.430 41.667 0.00 0.00 34.76 2.85
556 581 4.749048 AATTTCCTTTCCCTGGAGAAGT 57.251 40.909 0.00 0.00 34.76 3.01
557 582 5.860648 AATTTCCTTTCCCTGGAGAAGTA 57.139 39.130 0.00 0.00 34.76 2.24
558 583 5.860648 ATTTCCTTTCCCTGGAGAAGTAA 57.139 39.130 0.00 0.00 34.76 2.24
559 584 5.656549 TTTCCTTTCCCTGGAGAAGTAAA 57.343 39.130 0.00 0.00 34.76 2.01
560 585 5.656549 TTCCTTTCCCTGGAGAAGTAAAA 57.343 39.130 0.00 0.00 34.76 1.52
561 586 5.860648 TCCTTTCCCTGGAGAAGTAAAAT 57.139 39.130 0.00 0.00 0.00 1.82
562 587 6.214177 TCCTTTCCCTGGAGAAGTAAAATT 57.786 37.500 0.00 0.00 0.00 1.82
699 724 6.430000 GTCCTCTAACTCAGCCATTTTTGTTA 59.570 38.462 0.00 0.00 0.00 2.41
742 776 5.346181 AGTATCCTACTCAGCAAAACTCC 57.654 43.478 0.00 0.00 32.47 3.85
743 777 5.026790 AGTATCCTACTCAGCAAAACTCCT 58.973 41.667 0.00 0.00 32.47 3.69
744 778 4.917906 ATCCTACTCAGCAAAACTCCTT 57.082 40.909 0.00 0.00 0.00 3.36
745 779 4.008074 TCCTACTCAGCAAAACTCCTTG 57.992 45.455 0.00 0.00 0.00 3.61
746 780 9.887964 AGTATCCTACTCAGCAAAACTCCTTGC 62.888 44.444 0.03 0.03 42.69 4.01
770 805 6.237595 GCACTCATCTATCTACACAAAACGAC 60.238 42.308 0.00 0.00 0.00 4.34
772 807 7.008719 CACTCATCTATCTACACAAAACGACTG 59.991 40.741 0.00 0.00 0.00 3.51
805 840 4.035843 CCCGACAGGTTAGGAGCT 57.964 61.111 0.00 0.00 35.12 4.09
823 858 0.526096 CTACACAAATGCCGCCATGC 60.526 55.000 0.00 0.00 0.00 4.06
824 859 1.943116 TACACAAATGCCGCCATGCC 61.943 55.000 0.00 0.00 0.00 4.40
825 860 3.773404 ACAAATGCCGCCATGCCC 61.773 61.111 0.00 0.00 0.00 5.36
826 861 3.772281 CAAATGCCGCCATGCCCA 61.772 61.111 0.00 0.00 0.00 5.36
827 862 2.764967 AAATGCCGCCATGCCCAT 60.765 55.556 0.00 0.00 0.00 4.00
828 863 3.096633 AAATGCCGCCATGCCCATG 62.097 57.895 1.28 1.28 38.51 3.66
887 936 1.153489 TCCTGCAGCTGATTCTCGC 60.153 57.895 20.43 0.00 0.00 5.03
1302 1417 3.675775 GCAAGTTTCACAGCAACAAGGAA 60.676 43.478 0.00 0.00 0.00 3.36
1534 1649 2.509336 CATGGTCCGACGCCTGAC 60.509 66.667 0.00 0.00 0.00 3.51
1620 1735 4.932799 GGAAAGTTCTCTAGCTGTTTCCTC 59.067 45.833 0.00 0.00 39.80 3.71
1677 1798 0.874607 AGTGTCGTTGTCAACCTCGC 60.875 55.000 10.12 9.51 0.00 5.03
1761 1921 0.935196 GTAGCGCGGGTTTATCTTGG 59.065 55.000 8.83 0.00 0.00 3.61
1841 2001 4.672542 CGCTGTTTCCTGTTGTGGAATATG 60.673 45.833 0.00 0.00 44.55 1.78
1842 2002 4.737054 CTGTTTCCTGTTGTGGAATATGC 58.263 43.478 0.00 0.00 44.55 3.14
1843 2003 4.406456 TGTTTCCTGTTGTGGAATATGCT 58.594 39.130 0.00 0.00 44.55 3.79
1844 2004 5.565509 TGTTTCCTGTTGTGGAATATGCTA 58.434 37.500 0.00 0.00 44.55 3.49
1845 2005 6.186957 TGTTTCCTGTTGTGGAATATGCTAT 58.813 36.000 0.00 0.00 44.55 2.97
1846 2006 7.342581 TGTTTCCTGTTGTGGAATATGCTATA 58.657 34.615 0.00 0.00 44.55 1.31
1847 2007 7.998383 TGTTTCCTGTTGTGGAATATGCTATAT 59.002 33.333 0.00 0.00 44.55 0.86
1848 2008 8.507249 GTTTCCTGTTGTGGAATATGCTATATC 58.493 37.037 0.00 0.00 44.55 1.63
1849 2009 6.711277 TCCTGTTGTGGAATATGCTATATCC 58.289 40.000 0.00 0.00 32.39 2.59
1850 2010 5.882557 CCTGTTGTGGAATATGCTATATCCC 59.117 44.000 0.00 0.00 0.00 3.85
1851 2011 6.446909 TGTTGTGGAATATGCTATATCCCA 57.553 37.500 0.00 0.00 0.00 4.37
1852 2012 7.031415 TGTTGTGGAATATGCTATATCCCAT 57.969 36.000 0.00 0.00 0.00 4.00
1853 2013 8.156822 TGTTGTGGAATATGCTATATCCCATA 57.843 34.615 0.00 0.00 0.00 2.74
1854 2014 8.780977 TGTTGTGGAATATGCTATATCCCATAT 58.219 33.333 0.00 3.42 36.48 1.78
1855 2015 9.632638 GTTGTGGAATATGCTATATCCCATATT 57.367 33.333 15.35 15.35 43.56 1.28
1857 2017 9.851686 TGTGGAATATGCTATATCCCATATTTC 57.148 33.333 16.04 15.11 41.94 2.17
1858 2018 9.851686 GTGGAATATGCTATATCCCATATTTCA 57.148 33.333 17.31 17.31 42.96 2.69
1859 2019 9.851686 TGGAATATGCTATATCCCATATTTCAC 57.148 33.333 17.31 12.83 41.52 3.18
1860 2020 8.993121 GGAATATGCTATATCCCATATTTCACG 58.007 37.037 16.04 0.00 41.94 4.35
1861 2021 8.908786 AATATGCTATATCCCATATTTCACGG 57.091 34.615 11.91 0.00 40.07 4.94
1862 2022 5.755409 TGCTATATCCCATATTTCACGGT 57.245 39.130 0.00 0.00 0.00 4.83
1863 2023 6.860790 TGCTATATCCCATATTTCACGGTA 57.139 37.500 0.00 0.00 0.00 4.02
1864 2024 7.247456 TGCTATATCCCATATTTCACGGTAA 57.753 36.000 0.00 0.00 0.00 2.85
1865 2025 7.327975 TGCTATATCCCATATTTCACGGTAAG 58.672 38.462 0.00 0.00 0.00 2.34
1866 2026 7.179516 TGCTATATCCCATATTTCACGGTAAGA 59.820 37.037 0.00 0.00 0.00 2.10
1867 2027 7.707035 GCTATATCCCATATTTCACGGTAAGAG 59.293 40.741 0.00 0.00 0.00 2.85
1868 2028 7.792364 ATATCCCATATTTCACGGTAAGAGA 57.208 36.000 0.00 0.00 0.00 3.10
1869 2029 6.688073 ATCCCATATTTCACGGTAAGAGAT 57.312 37.500 0.00 0.00 0.00 2.75
1870 2030 6.097915 TCCCATATTTCACGGTAAGAGATC 57.902 41.667 0.00 0.00 0.00 2.75
1871 2031 4.923871 CCCATATTTCACGGTAAGAGATCG 59.076 45.833 0.00 0.00 0.00 3.69
1872 2032 4.386049 CCATATTTCACGGTAAGAGATCGC 59.614 45.833 0.00 0.00 0.00 4.58
1873 2033 3.802948 ATTTCACGGTAAGAGATCGCT 57.197 42.857 0.00 0.00 0.00 4.93
1874 2034 4.913335 ATTTCACGGTAAGAGATCGCTA 57.087 40.909 0.00 0.00 0.00 4.26
1875 2035 4.707030 TTTCACGGTAAGAGATCGCTAA 57.293 40.909 0.00 0.00 0.00 3.09
1876 2036 3.687572 TCACGGTAAGAGATCGCTAAC 57.312 47.619 0.00 0.00 0.00 2.34
1877 2037 2.357009 TCACGGTAAGAGATCGCTAACC 59.643 50.000 0.00 0.00 0.00 2.85
1878 2038 2.098607 CACGGTAAGAGATCGCTAACCA 59.901 50.000 0.00 0.00 0.00 3.67
1879 2039 2.358267 ACGGTAAGAGATCGCTAACCAG 59.642 50.000 0.00 1.13 0.00 4.00
1880 2040 2.287668 CGGTAAGAGATCGCTAACCAGG 60.288 54.545 0.00 0.00 0.00 4.45
1881 2041 2.546162 GGTAAGAGATCGCTAACCAGGC 60.546 54.545 0.00 0.00 0.00 4.85
1882 2042 0.466124 AAGAGATCGCTAACCAGGCC 59.534 55.000 0.00 0.00 0.00 5.19
1883 2043 0.397816 AGAGATCGCTAACCAGGCCT 60.398 55.000 0.00 0.00 0.00 5.19
1884 2044 0.249657 GAGATCGCTAACCAGGCCTG 60.250 60.000 26.87 26.87 0.00 4.85
1885 2045 0.978146 AGATCGCTAACCAGGCCTGT 60.978 55.000 30.63 16.39 0.00 4.00
1886 2046 0.530870 GATCGCTAACCAGGCCTGTC 60.531 60.000 30.63 15.36 0.00 3.51
1887 2047 2.298158 ATCGCTAACCAGGCCTGTCG 62.298 60.000 30.63 22.62 0.00 4.35
1888 2048 2.820037 GCTAACCAGGCCTGTCGC 60.820 66.667 30.63 21.50 0.00 5.19
1897 2057 2.203070 GCCTGTCGCCTGGTATGG 60.203 66.667 0.00 0.00 32.49 2.74
1898 2058 2.731571 GCCTGTCGCCTGGTATGGA 61.732 63.158 0.00 0.00 32.49 3.41
1899 2059 1.904771 CCTGTCGCCTGGTATGGAA 59.095 57.895 0.00 0.00 0.00 3.53
1900 2060 0.469917 CCTGTCGCCTGGTATGGAAT 59.530 55.000 0.00 0.00 0.00 3.01
1901 2061 1.691976 CCTGTCGCCTGGTATGGAATA 59.308 52.381 0.00 0.00 0.00 1.75
1902 2062 2.303022 CCTGTCGCCTGGTATGGAATAT 59.697 50.000 0.00 0.00 0.00 1.28
1903 2063 3.329386 CTGTCGCCTGGTATGGAATATG 58.671 50.000 0.00 0.00 0.00 1.78
1904 2064 2.076863 GTCGCCTGGTATGGAATATGC 58.923 52.381 0.00 0.00 0.00 3.14
1905 2065 1.977854 TCGCCTGGTATGGAATATGCT 59.022 47.619 0.00 0.00 0.00 3.79
2005 2208 8.798859 AAATAATGTTGCAGTATCTGTCTTCT 57.201 30.769 0.00 0.00 33.43 2.85
2006 2209 8.798859 AATAATGTTGCAGTATCTGTCTTCTT 57.201 30.769 0.00 0.00 33.43 2.52
2032 2235 3.138798 GCGAGAGTACCCTCCGCA 61.139 66.667 13.41 0.00 46.97 5.69
2039 2242 2.043752 TACCCTCCGCATCGTCCA 60.044 61.111 0.00 0.00 0.00 4.02
2046 2249 1.062587 CTCCGCATCGTCCATTTTCAC 59.937 52.381 0.00 0.00 0.00 3.18
2078 2281 1.867363 GAGGTCTTTCAGGGGCTCTA 58.133 55.000 0.00 0.00 0.00 2.43
2091 2294 3.207677 GCTCTATGTGCCATCCGAG 57.792 57.895 0.00 8.65 0.00 4.63
2187 2390 3.131478 CCGTCATGGGCCGGTTTC 61.131 66.667 1.90 0.00 39.38 2.78
2239 2442 3.775654 CCCCCTCTCACGCTGGAC 61.776 72.222 0.00 0.00 0.00 4.02
2240 2443 2.997315 CCCCTCTCACGCTGGACA 60.997 66.667 0.00 0.00 0.00 4.02
2241 2444 2.583441 CCCCTCTCACGCTGGACAA 61.583 63.158 0.00 0.00 0.00 3.18
2242 2445 1.079543 CCCTCTCACGCTGGACAAG 60.080 63.158 0.00 0.00 0.00 3.16
2252 2455 4.268720 TGGACAAGCCAACCCAAC 57.731 55.556 0.00 0.00 45.87 3.77
2253 2456 1.456705 TGGACAAGCCAACCCAACC 60.457 57.895 0.00 0.00 45.87 3.77
2254 2457 2.207229 GGACAAGCCAACCCAACCC 61.207 63.158 0.00 0.00 36.34 4.11
2255 2458 2.520741 ACAAGCCAACCCAACCCG 60.521 61.111 0.00 0.00 0.00 5.28
2256 2459 2.520741 CAAGCCAACCCAACCCGT 60.521 61.111 0.00 0.00 0.00 5.28
2257 2460 2.203437 AAGCCAACCCAACCCGTC 60.203 61.111 0.00 0.00 0.00 4.79
2258 2461 2.763645 AAGCCAACCCAACCCGTCT 61.764 57.895 0.00 0.00 0.00 4.18
2259 2462 2.976494 AAGCCAACCCAACCCGTCTG 62.976 60.000 0.00 0.00 0.00 3.51
2260 2463 2.513895 CCAACCCAACCCGTCTGT 59.486 61.111 0.00 0.00 0.00 3.41
2261 2464 1.599797 CCAACCCAACCCGTCTGTC 60.600 63.158 0.00 0.00 0.00 3.51
2262 2465 1.959226 CAACCCAACCCGTCTGTCG 60.959 63.158 0.00 0.00 39.52 4.35
2271 2474 2.254350 CGTCTGTCGGCGTCTTCA 59.746 61.111 6.85 1.85 35.71 3.02
2272 2475 1.371267 CGTCTGTCGGCGTCTTCAA 60.371 57.895 6.85 0.00 35.71 2.69
2273 2476 1.606350 CGTCTGTCGGCGTCTTCAAC 61.606 60.000 6.85 0.00 35.71 3.18
2274 2477 1.006571 TCTGTCGGCGTCTTCAACC 60.007 57.895 6.85 0.00 0.00 3.77
2275 2478 1.006102 CTGTCGGCGTCTTCAACCT 60.006 57.895 6.85 0.00 0.00 3.50
2276 2479 0.242825 CTGTCGGCGTCTTCAACCTA 59.757 55.000 6.85 0.00 0.00 3.08
2277 2480 0.038892 TGTCGGCGTCTTCAACCTAC 60.039 55.000 6.85 0.00 0.00 3.18
2278 2481 1.069378 GTCGGCGTCTTCAACCTACG 61.069 60.000 6.85 0.00 39.55 3.51
2279 2482 1.080974 CGGCGTCTTCAACCTACGT 60.081 57.895 0.00 0.00 38.81 3.57
2280 2483 1.069378 CGGCGTCTTCAACCTACGTC 61.069 60.000 0.00 0.00 38.81 4.34
2286 2630 0.736325 CTTCAACCTACGTCGGGCAG 60.736 60.000 11.27 0.00 0.00 4.85
2290 2634 2.183555 CCTACGTCGGGCAGGTTC 59.816 66.667 0.00 0.00 0.00 3.62
2321 2665 2.629763 GGGTCGCGTGTGTGTTTC 59.370 61.111 5.77 0.00 0.00 2.78
2351 2695 0.605319 GCCAGGACCAAATGTCGACA 60.605 55.000 22.48 22.48 45.46 4.35
2378 2722 0.806102 TTGCGCCGATCTAGTTCAGC 60.806 55.000 4.18 0.77 0.00 4.26
2382 2726 1.437573 CCGATCTAGTTCAGCCGCA 59.562 57.895 1.89 0.00 0.00 5.69
2391 2735 0.107654 GTTCAGCCGCAATAGGAGGT 60.108 55.000 0.00 0.00 38.95 3.85
2394 2738 1.995626 AGCCGCAATAGGAGGTGGT 60.996 57.895 0.00 0.00 38.95 4.16
2396 2740 1.819632 CCGCAATAGGAGGTGGTGC 60.820 63.158 0.00 0.00 0.00 5.01
2400 2744 0.249120 CAATAGGAGGTGGTGCGTCA 59.751 55.000 0.00 0.00 33.92 4.35
2420 2769 2.343758 CCTGCCTACGCCGCATAT 59.656 61.111 0.00 0.00 35.25 1.78
2421 2770 2.029288 CCTGCCTACGCCGCATATG 61.029 63.158 0.00 0.00 35.25 1.78
2423 2772 2.742372 GCCTACGCCGCATATGGG 60.742 66.667 12.66 12.66 0.00 4.00
2434 2783 2.032528 ATATGGGGGCGTGCATCG 59.967 61.111 0.00 0.00 43.12 3.84
2480 2829 0.863144 TTTCGTTGTCCTGTAAGCGC 59.137 50.000 0.00 0.00 0.00 5.92
2485 2834 1.607148 GTTGTCCTGTAAGCGCCTTTT 59.393 47.619 2.29 0.00 0.00 2.27
2486 2835 1.234821 TGTCCTGTAAGCGCCTTTTG 58.765 50.000 2.29 0.00 0.00 2.44
2487 2836 1.235724 GTCCTGTAAGCGCCTTTTGT 58.764 50.000 2.29 0.00 0.00 2.83
2488 2837 1.197036 GTCCTGTAAGCGCCTTTTGTC 59.803 52.381 2.29 0.00 0.00 3.18
2489 2838 1.071699 TCCTGTAAGCGCCTTTTGTCT 59.928 47.619 2.29 0.00 0.00 3.41
2490 2839 1.464997 CCTGTAAGCGCCTTTTGTCTC 59.535 52.381 2.29 0.00 0.00 3.36
2491 2840 2.417719 CTGTAAGCGCCTTTTGTCTCT 58.582 47.619 2.29 0.00 0.00 3.10
2493 2842 1.464997 GTAAGCGCCTTTTGTCTCTGG 59.535 52.381 2.29 0.00 0.00 3.86
2495 2844 0.179018 AGCGCCTTTTGTCTCTGGTT 60.179 50.000 2.29 0.00 0.00 3.67
2496 2845 0.040067 GCGCCTTTTGTCTCTGGTTG 60.040 55.000 0.00 0.00 0.00 3.77
2525 2874 0.967380 CTCATGGACCTTGGGTTGGC 60.967 60.000 7.48 0.00 35.25 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.276325 CAGTAACTCTGTAACTAGCACTTTTTG 58.724 37.037 0.00 0.00 39.17 2.44
1 2 8.366671 CAGTAACTCTGTAACTAGCACTTTTT 57.633 34.615 0.00 0.00 39.17 1.94
2 3 7.948278 CAGTAACTCTGTAACTAGCACTTTT 57.052 36.000 0.00 0.00 39.17 2.27
17 18 3.838244 TTCACCTTGCACAGTAACTCT 57.162 42.857 0.00 0.00 0.00 3.24
18 19 4.127171 TCTTTCACCTTGCACAGTAACTC 58.873 43.478 0.00 0.00 0.00 3.01
19 20 4.150897 TCTTTCACCTTGCACAGTAACT 57.849 40.909 0.00 0.00 0.00 2.24
20 21 4.893424 TTCTTTCACCTTGCACAGTAAC 57.107 40.909 0.00 0.00 0.00 2.50
21 22 4.338118 CCTTTCTTTCACCTTGCACAGTAA 59.662 41.667 0.00 0.00 0.00 2.24
22 23 3.882888 CCTTTCTTTCACCTTGCACAGTA 59.117 43.478 0.00 0.00 0.00 2.74
23 24 2.689983 CCTTTCTTTCACCTTGCACAGT 59.310 45.455 0.00 0.00 0.00 3.55
24 25 2.951642 TCCTTTCTTTCACCTTGCACAG 59.048 45.455 0.00 0.00 0.00 3.66
25 26 3.011566 TCCTTTCTTTCACCTTGCACA 57.988 42.857 0.00 0.00 0.00 4.57
26 27 4.097892 TCTTTCCTTTCTTTCACCTTGCAC 59.902 41.667 0.00 0.00 0.00 4.57
27 28 4.277476 TCTTTCCTTTCTTTCACCTTGCA 58.723 39.130 0.00 0.00 0.00 4.08
28 29 4.580580 TCTCTTTCCTTTCTTTCACCTTGC 59.419 41.667 0.00 0.00 0.00 4.01
29 30 6.699575 TTCTCTTTCCTTTCTTTCACCTTG 57.300 37.500 0.00 0.00 0.00 3.61
30 31 7.718334 TTTTCTCTTTCCTTTCTTTCACCTT 57.282 32.000 0.00 0.00 0.00 3.50
31 32 7.147828 CCTTTTTCTCTTTCCTTTCTTTCACCT 60.148 37.037 0.00 0.00 0.00 4.00
32 33 6.980978 CCTTTTTCTCTTTCCTTTCTTTCACC 59.019 38.462 0.00 0.00 0.00 4.02
33 34 7.772166 TCCTTTTTCTCTTTCCTTTCTTTCAC 58.228 34.615 0.00 0.00 0.00 3.18
34 35 7.954666 TCCTTTTTCTCTTTCCTTTCTTTCA 57.045 32.000 0.00 0.00 0.00 2.69
35 36 9.823647 ATTTCCTTTTTCTCTTTCCTTTCTTTC 57.176 29.630 0.00 0.00 0.00 2.62
42 43 9.987272 CAATGTAATTTCCTTTTTCTCTTTCCT 57.013 29.630 0.00 0.00 31.22 3.36
43 44 8.712363 GCAATGTAATTTCCTTTTTCTCTTTCC 58.288 33.333 0.00 0.00 31.22 3.13
44 45 8.712363 GGCAATGTAATTTCCTTTTTCTCTTTC 58.288 33.333 0.00 0.00 36.63 2.62
45 46 8.210265 TGGCAATGTAATTTCCTTTTTCTCTTT 58.790 29.630 0.00 0.00 40.51 2.52
46 47 7.734942 TGGCAATGTAATTTCCTTTTTCTCTT 58.265 30.769 0.00 0.00 40.51 2.85
47 48 7.233348 TCTGGCAATGTAATTTCCTTTTTCTCT 59.767 33.333 0.00 0.00 40.51 3.10
48 49 7.378181 TCTGGCAATGTAATTTCCTTTTTCTC 58.622 34.615 0.00 0.00 40.51 2.87
49 50 7.301868 TCTGGCAATGTAATTTCCTTTTTCT 57.698 32.000 0.00 0.00 40.51 2.52
50 51 7.961325 TTCTGGCAATGTAATTTCCTTTTTC 57.039 32.000 0.00 0.00 40.51 2.29
51 52 7.772757 TGTTTCTGGCAATGTAATTTCCTTTTT 59.227 29.630 0.00 0.00 40.51 1.94
52 53 7.226523 GTGTTTCTGGCAATGTAATTTCCTTTT 59.773 33.333 0.00 0.00 40.51 2.27
53 54 6.705825 GTGTTTCTGGCAATGTAATTTCCTTT 59.294 34.615 0.00 0.00 40.51 3.11
54 55 6.041979 AGTGTTTCTGGCAATGTAATTTCCTT 59.958 34.615 0.00 0.00 40.51 3.36
55 56 5.539955 AGTGTTTCTGGCAATGTAATTTCCT 59.460 36.000 0.00 0.00 40.51 3.36
56 57 5.783111 AGTGTTTCTGGCAATGTAATTTCC 58.217 37.500 0.00 0.00 40.26 3.13
57 58 6.681777 AGAGTGTTTCTGGCAATGTAATTTC 58.318 36.000 0.00 0.00 30.83 2.17
58 59 6.491403 AGAGAGTGTTTCTGGCAATGTAATTT 59.509 34.615 0.00 0.00 35.87 1.82
59 60 6.006449 AGAGAGTGTTTCTGGCAATGTAATT 58.994 36.000 0.00 0.00 35.87 1.40
60 61 5.564550 AGAGAGTGTTTCTGGCAATGTAAT 58.435 37.500 0.00 0.00 35.87 1.89
61 62 4.973168 AGAGAGTGTTTCTGGCAATGTAA 58.027 39.130 0.00 0.00 35.87 2.41
62 63 4.623932 AGAGAGTGTTTCTGGCAATGTA 57.376 40.909 0.00 0.00 35.87 2.29
63 64 3.498774 AGAGAGTGTTTCTGGCAATGT 57.501 42.857 0.00 0.00 35.87 2.71
64 65 5.335191 GGTTAAGAGAGTGTTTCTGGCAATG 60.335 44.000 0.00 0.00 35.87 2.82
65 66 4.762251 GGTTAAGAGAGTGTTTCTGGCAAT 59.238 41.667 0.00 0.00 35.87 3.56
66 67 4.134563 GGTTAAGAGAGTGTTTCTGGCAA 58.865 43.478 0.00 0.00 35.87 4.52
67 68 3.135712 TGGTTAAGAGAGTGTTTCTGGCA 59.864 43.478 0.00 0.00 35.87 4.92
68 69 3.740115 TGGTTAAGAGAGTGTTTCTGGC 58.260 45.455 0.00 0.00 35.87 4.85
69 70 5.551233 TCATGGTTAAGAGAGTGTTTCTGG 58.449 41.667 0.00 0.00 35.87 3.86
70 71 7.102346 AGATCATGGTTAAGAGAGTGTTTCTG 58.898 38.462 0.00 0.00 35.87 3.02
71 72 7.251321 AGATCATGGTTAAGAGAGTGTTTCT 57.749 36.000 0.00 0.00 39.43 2.52
72 73 6.536941 GGAGATCATGGTTAAGAGAGTGTTTC 59.463 42.308 0.00 0.00 0.00 2.78
73 74 6.410540 GGAGATCATGGTTAAGAGAGTGTTT 58.589 40.000 0.00 0.00 0.00 2.83
74 75 5.104735 GGGAGATCATGGTTAAGAGAGTGTT 60.105 44.000 0.00 0.00 0.00 3.32
75 76 4.407296 GGGAGATCATGGTTAAGAGAGTGT 59.593 45.833 0.00 0.00 0.00 3.55
76 77 4.406972 TGGGAGATCATGGTTAAGAGAGTG 59.593 45.833 0.00 0.00 0.00 3.51
77 78 4.624913 TGGGAGATCATGGTTAAGAGAGT 58.375 43.478 0.00 0.00 0.00 3.24
78 79 4.502950 GCTGGGAGATCATGGTTAAGAGAG 60.503 50.000 0.00 0.00 0.00 3.20
79 80 3.389329 GCTGGGAGATCATGGTTAAGAGA 59.611 47.826 0.00 0.00 0.00 3.10
80 81 3.495806 GGCTGGGAGATCATGGTTAAGAG 60.496 52.174 0.00 0.00 0.00 2.85
81 82 2.439507 GGCTGGGAGATCATGGTTAAGA 59.560 50.000 0.00 0.00 0.00 2.10
82 83 2.173356 TGGCTGGGAGATCATGGTTAAG 59.827 50.000 0.00 0.00 0.00 1.85
83 84 2.204463 TGGCTGGGAGATCATGGTTAA 58.796 47.619 0.00 0.00 0.00 2.01
84 85 1.891933 TGGCTGGGAGATCATGGTTA 58.108 50.000 0.00 0.00 0.00 2.85
85 86 1.229131 ATGGCTGGGAGATCATGGTT 58.771 50.000 0.00 0.00 0.00 3.67
86 87 1.133575 CAATGGCTGGGAGATCATGGT 60.134 52.381 0.00 0.00 0.00 3.55
87 88 1.133575 ACAATGGCTGGGAGATCATGG 60.134 52.381 0.00 0.00 0.00 3.66
88 89 1.954382 CACAATGGCTGGGAGATCATG 59.046 52.381 0.00 0.00 0.00 3.07
89 90 1.753141 GCACAATGGCTGGGAGATCAT 60.753 52.381 0.00 0.00 0.00 2.45
90 91 0.394762 GCACAATGGCTGGGAGATCA 60.395 55.000 0.00 0.00 0.00 2.92
91 92 0.394762 TGCACAATGGCTGGGAGATC 60.395 55.000 0.00 0.00 34.04 2.75
92 93 0.682209 GTGCACAATGGCTGGGAGAT 60.682 55.000 13.17 0.00 34.04 2.75
93 94 1.303561 GTGCACAATGGCTGGGAGA 60.304 57.895 13.17 0.00 34.04 3.71
94 95 2.345760 GGTGCACAATGGCTGGGAG 61.346 63.158 20.43 0.00 34.04 4.30
95 96 2.283101 GGTGCACAATGGCTGGGA 60.283 61.111 20.43 0.00 34.04 4.37
96 97 3.384532 GGGTGCACAATGGCTGGG 61.385 66.667 20.43 0.00 34.04 4.45
97 98 1.909781 AAGGGTGCACAATGGCTGG 60.910 57.895 20.43 0.00 34.04 4.85
98 99 1.180456 TCAAGGGTGCACAATGGCTG 61.180 55.000 20.43 6.71 34.04 4.85
99 100 0.896940 CTCAAGGGTGCACAATGGCT 60.897 55.000 20.43 0.00 34.04 4.75
100 101 1.588082 CTCAAGGGTGCACAATGGC 59.412 57.895 20.43 0.00 0.00 4.40
101 102 1.880819 GCCTCAAGGGTGCACAATGG 61.881 60.000 20.43 11.96 37.43 3.16
102 103 1.588082 GCCTCAAGGGTGCACAATG 59.412 57.895 20.43 13.77 37.43 2.82
103 104 1.607467 GGCCTCAAGGGTGCACAAT 60.607 57.895 20.43 2.74 37.43 2.71
104 105 2.203480 GGCCTCAAGGGTGCACAA 60.203 61.111 20.43 0.00 37.43 3.33
105 106 3.496309 CTGGCCTCAAGGGTGCACA 62.496 63.158 20.43 0.00 37.43 4.57
106 107 2.674380 CTGGCCTCAAGGGTGCAC 60.674 66.667 8.80 8.80 37.43 4.57
107 108 4.666253 GCTGGCCTCAAGGGTGCA 62.666 66.667 3.32 0.00 37.43 4.57
108 109 4.666253 TGCTGGCCTCAAGGGTGC 62.666 66.667 3.32 0.00 37.43 5.01
109 110 2.360852 CTGCTGGCCTCAAGGGTG 60.361 66.667 3.32 0.00 37.43 4.61
110 111 2.856000 ACTGCTGGCCTCAAGGGT 60.856 61.111 3.32 0.00 37.43 4.34
111 112 2.045536 GACTGCTGGCCTCAAGGG 60.046 66.667 3.32 0.00 35.18 3.95
112 113 2.045536 GGACTGCTGGCCTCAAGG 60.046 66.667 8.52 0.00 38.53 3.61
113 114 1.673665 GTGGACTGCTGGCCTCAAG 60.674 63.158 17.44 0.34 0.00 3.02
114 115 2.431683 GTGGACTGCTGGCCTCAA 59.568 61.111 17.44 0.00 0.00 3.02
115 116 3.640407 GGTGGACTGCTGGCCTCA 61.640 66.667 17.44 0.49 0.00 3.86
116 117 3.196207 TTGGTGGACTGCTGGCCTC 62.196 63.158 17.44 13.07 0.00 4.70
117 118 3.177884 TTGGTGGACTGCTGGCCT 61.178 61.111 17.44 0.00 0.00 5.19
118 119 2.674380 CTTGGTGGACTGCTGGCC 60.674 66.667 8.91 8.91 0.00 5.36
119 120 2.113986 ACTTGGTGGACTGCTGGC 59.886 61.111 0.00 0.00 0.00 4.85
120 121 2.263741 GCACTTGGTGGACTGCTGG 61.264 63.158 0.00 0.00 33.64 4.85
121 122 2.610694 CGCACTTGGTGGACTGCTG 61.611 63.158 0.00 0.00 33.64 4.41
122 123 2.281070 CGCACTTGGTGGACTGCT 60.281 61.111 0.00 0.00 33.64 4.24
123 124 4.030452 GCGCACTTGGTGGACTGC 62.030 66.667 0.30 0.00 33.64 4.40
124 125 2.591429 TGCGCACTTGGTGGACTG 60.591 61.111 5.66 0.00 33.64 3.51
125 126 2.281070 CTGCGCACTTGGTGGACT 60.281 61.111 5.66 0.00 33.64 3.85
126 127 4.030452 GCTGCGCACTTGGTGGAC 62.030 66.667 5.66 0.00 33.64 4.02
127 128 4.254709 AGCTGCGCACTTGGTGGA 62.255 61.111 5.66 0.00 33.64 4.02
128 129 3.730761 GAGCTGCGCACTTGGTGG 61.731 66.667 5.66 0.00 33.64 4.61
129 130 4.081030 CGAGCTGCGCACTTGGTG 62.081 66.667 5.66 0.00 36.51 4.17
130 131 4.299547 TCGAGCTGCGCACTTGGT 62.300 61.111 5.66 1.68 40.61 3.67
131 132 2.819117 TACTCGAGCTGCGCACTTGG 62.819 60.000 13.61 9.48 40.61 3.61
132 133 1.444383 TACTCGAGCTGCGCACTTG 60.444 57.895 13.61 13.17 40.61 3.16
133 134 1.444553 GTACTCGAGCTGCGCACTT 60.445 57.895 13.61 0.00 40.61 3.16
134 135 2.142357 TTGTACTCGAGCTGCGCACT 62.142 55.000 13.61 9.38 40.61 4.40
135 136 1.078759 ATTGTACTCGAGCTGCGCAC 61.079 55.000 13.61 3.54 40.61 5.34
136 137 0.389817 AATTGTACTCGAGCTGCGCA 60.390 50.000 13.61 10.98 40.61 6.09
137 138 0.299003 GAATTGTACTCGAGCTGCGC 59.701 55.000 13.61 0.00 40.61 6.09
138 139 0.567968 CGAATTGTACTCGAGCTGCG 59.432 55.000 13.61 3.27 38.61 5.18
139 140 1.909376 TCGAATTGTACTCGAGCTGC 58.091 50.000 13.61 4.29 40.25 5.25
153 154 8.850156 CCCCTTTCTAAATATTTGTGATCGAAT 58.150 33.333 11.05 0.00 0.00 3.34
154 155 8.050325 TCCCCTTTCTAAATATTTGTGATCGAA 58.950 33.333 11.05 2.00 0.00 3.71
155 156 7.570132 TCCCCTTTCTAAATATTTGTGATCGA 58.430 34.615 11.05 0.00 0.00 3.59
156 157 7.801716 TCCCCTTTCTAAATATTTGTGATCG 57.198 36.000 11.05 3.95 0.00 3.69
171 172 9.948964 CTTCAATCATAAATTTTTCCCCTTTCT 57.051 29.630 0.00 0.00 0.00 2.52
172 173 9.942850 TCTTCAATCATAAATTTTTCCCCTTTC 57.057 29.630 0.00 0.00 0.00 2.62
174 175 9.895138 CATCTTCAATCATAAATTTTTCCCCTT 57.105 29.630 0.00 0.00 0.00 3.95
175 176 7.989170 GCATCTTCAATCATAAATTTTTCCCCT 59.011 33.333 0.00 0.00 0.00 4.79
176 177 7.042523 CGCATCTTCAATCATAAATTTTTCCCC 60.043 37.037 0.00 0.00 0.00 4.81
177 178 7.706179 TCGCATCTTCAATCATAAATTTTTCCC 59.294 33.333 0.00 0.00 0.00 3.97
178 179 8.633075 TCGCATCTTCAATCATAAATTTTTCC 57.367 30.769 0.00 0.00 0.00 3.13
180 181 9.806203 TGATCGCATCTTCAATCATAAATTTTT 57.194 25.926 0.00 0.00 0.00 1.94
181 182 9.459640 CTGATCGCATCTTCAATCATAAATTTT 57.540 29.630 0.00 0.00 0.00 1.82
182 183 8.627403 ACTGATCGCATCTTCAATCATAAATTT 58.373 29.630 0.00 0.00 0.00 1.82
183 184 8.162878 ACTGATCGCATCTTCAATCATAAATT 57.837 30.769 0.00 0.00 0.00 1.82
184 185 7.741027 ACTGATCGCATCTTCAATCATAAAT 57.259 32.000 0.00 0.00 0.00 1.40
185 186 7.517259 CGAACTGATCGCATCTTCAATCATAAA 60.517 37.037 0.00 0.00 45.89 1.40
186 187 6.074142 CGAACTGATCGCATCTTCAATCATAA 60.074 38.462 0.00 0.00 45.89 1.90
187 188 5.403466 CGAACTGATCGCATCTTCAATCATA 59.597 40.000 0.00 0.00 45.89 2.15
188 189 4.210746 CGAACTGATCGCATCTTCAATCAT 59.789 41.667 0.00 0.00 45.89 2.45
189 190 3.553105 CGAACTGATCGCATCTTCAATCA 59.447 43.478 0.00 0.00 45.89 2.57
190 191 4.112793 CGAACTGATCGCATCTTCAATC 57.887 45.455 0.00 0.00 45.89 2.67
202 203 4.853743 GCATTTGGAAAGAACGAACTGATC 59.146 41.667 0.00 0.00 0.00 2.92
203 204 4.321230 GGCATTTGGAAAGAACGAACTGAT 60.321 41.667 0.00 0.00 0.00 2.90
204 205 3.004315 GGCATTTGGAAAGAACGAACTGA 59.996 43.478 0.00 0.00 0.00 3.41
205 206 3.308530 GGCATTTGGAAAGAACGAACTG 58.691 45.455 0.00 0.00 0.00 3.16
206 207 2.296190 GGGCATTTGGAAAGAACGAACT 59.704 45.455 0.00 0.00 0.00 3.01
207 208 2.609491 GGGGCATTTGGAAAGAACGAAC 60.609 50.000 0.00 0.00 0.00 3.95
208 209 1.616374 GGGGCATTTGGAAAGAACGAA 59.384 47.619 0.00 0.00 0.00 3.85
209 210 1.253100 GGGGCATTTGGAAAGAACGA 58.747 50.000 0.00 0.00 0.00 3.85
210 211 0.965439 TGGGGCATTTGGAAAGAACG 59.035 50.000 0.00 0.00 0.00 3.95
211 212 1.001974 GGTGGGGCATTTGGAAAGAAC 59.998 52.381 0.00 0.00 0.00 3.01
212 213 1.347062 GGTGGGGCATTTGGAAAGAA 58.653 50.000 0.00 0.00 0.00 2.52
213 214 0.189574 TGGTGGGGCATTTGGAAAGA 59.810 50.000 0.00 0.00 0.00 2.52
214 215 1.055040 TTGGTGGGGCATTTGGAAAG 58.945 50.000 0.00 0.00 0.00 2.62
215 216 1.511613 TTTGGTGGGGCATTTGGAAA 58.488 45.000 0.00 0.00 0.00 3.13
216 217 1.739750 ATTTGGTGGGGCATTTGGAA 58.260 45.000 0.00 0.00 0.00 3.53
217 218 2.465813 CTATTTGGTGGGGCATTTGGA 58.534 47.619 0.00 0.00 0.00 3.53
218 219 1.134431 GCTATTTGGTGGGGCATTTGG 60.134 52.381 0.00 0.00 0.00 3.28
219 220 1.134431 GGCTATTTGGTGGGGCATTTG 60.134 52.381 0.00 0.00 0.00 2.32
220 221 1.203237 GGCTATTTGGTGGGGCATTT 58.797 50.000 0.00 0.00 0.00 2.32
221 222 0.042431 TGGCTATTTGGTGGGGCATT 59.958 50.000 0.00 0.00 0.00 3.56
222 223 0.265553 ATGGCTATTTGGTGGGGCAT 59.734 50.000 0.00 0.00 39.53 4.40
223 224 0.396974 GATGGCTATTTGGTGGGGCA 60.397 55.000 0.00 0.00 38.52 5.36
224 225 0.396974 TGATGGCTATTTGGTGGGGC 60.397 55.000 0.00 0.00 0.00 5.80
225 226 2.386829 ATGATGGCTATTTGGTGGGG 57.613 50.000 0.00 0.00 0.00 4.96
226 227 4.444536 CAAAATGATGGCTATTTGGTGGG 58.555 43.478 0.00 0.00 0.00 4.61
227 228 4.444536 CCAAAATGATGGCTATTTGGTGG 58.555 43.478 7.74 0.00 44.25 4.61
231 232 7.338800 ACTACTCCAAAATGATGGCTATTTG 57.661 36.000 0.00 0.00 40.46 2.32
232 233 7.961326 AACTACTCCAAAATGATGGCTATTT 57.039 32.000 0.00 0.00 40.46 1.40
233 234 7.397192 ACAAACTACTCCAAAATGATGGCTATT 59.603 33.333 0.00 0.00 40.46 1.73
234 235 6.891908 ACAAACTACTCCAAAATGATGGCTAT 59.108 34.615 0.00 0.00 40.46 2.97
235 236 6.245408 ACAAACTACTCCAAAATGATGGCTA 58.755 36.000 0.00 0.00 40.46 3.93
236 237 5.079643 ACAAACTACTCCAAAATGATGGCT 58.920 37.500 0.00 0.00 40.46 4.75
237 238 5.391312 ACAAACTACTCCAAAATGATGGC 57.609 39.130 0.00 0.00 40.46 4.40
238 239 8.143835 AGAAAACAAACTACTCCAAAATGATGG 58.856 33.333 0.00 0.00 42.12 3.51
239 240 9.533253 AAGAAAACAAACTACTCCAAAATGATG 57.467 29.630 0.00 0.00 0.00 3.07
240 241 9.533253 CAAGAAAACAAACTACTCCAAAATGAT 57.467 29.630 0.00 0.00 0.00 2.45
241 242 7.491048 GCAAGAAAACAAACTACTCCAAAATGA 59.509 33.333 0.00 0.00 0.00 2.57
342 345 2.470196 CGAGAGCTTGCAATTCATGG 57.530 50.000 0.00 0.00 0.00 3.66
543 568 5.711698 ACCAAATTTTACTTCTCCAGGGAA 58.288 37.500 0.00 0.00 0.00 3.97
544 569 5.333566 ACCAAATTTTACTTCTCCAGGGA 57.666 39.130 0.00 0.00 0.00 4.20
545 570 5.123344 CGTACCAAATTTTACTTCTCCAGGG 59.877 44.000 0.00 0.00 0.00 4.45
546 571 5.935789 TCGTACCAAATTTTACTTCTCCAGG 59.064 40.000 0.00 0.00 0.00 4.45
547 572 7.549488 AGATCGTACCAAATTTTACTTCTCCAG 59.451 37.037 0.00 0.00 0.00 3.86
548 573 7.391620 AGATCGTACCAAATTTTACTTCTCCA 58.608 34.615 0.00 0.00 0.00 3.86
549 574 7.764901 AGAGATCGTACCAAATTTTACTTCTCC 59.235 37.037 16.58 7.67 31.70 3.71
550 575 8.705048 AGAGATCGTACCAAATTTTACTTCTC 57.295 34.615 14.56 14.56 31.60 2.87
551 576 8.532819 AGAGAGATCGTACCAAATTTTACTTCT 58.467 33.333 0.00 0.00 0.00 2.85
552 577 8.596380 CAGAGAGATCGTACCAAATTTTACTTC 58.404 37.037 0.00 0.00 0.00 3.01
553 578 7.064728 GCAGAGAGATCGTACCAAATTTTACTT 59.935 37.037 0.00 0.00 0.00 2.24
554 579 6.535508 GCAGAGAGATCGTACCAAATTTTACT 59.464 38.462 0.00 0.00 0.00 2.24
555 580 6.238130 GGCAGAGAGATCGTACCAAATTTTAC 60.238 42.308 0.00 0.00 0.00 2.01
556 581 5.815740 GGCAGAGAGATCGTACCAAATTTTA 59.184 40.000 0.00 0.00 0.00 1.52
557 582 4.636206 GGCAGAGAGATCGTACCAAATTTT 59.364 41.667 0.00 0.00 0.00 1.82
558 583 4.192317 GGCAGAGAGATCGTACCAAATTT 58.808 43.478 0.00 0.00 0.00 1.82
559 584 3.197766 TGGCAGAGAGATCGTACCAAATT 59.802 43.478 0.00 0.00 0.00 1.82
560 585 2.766263 TGGCAGAGAGATCGTACCAAAT 59.234 45.455 0.00 0.00 0.00 2.32
561 586 2.176045 TGGCAGAGAGATCGTACCAAA 58.824 47.619 0.00 0.00 0.00 3.28
562 587 1.847328 TGGCAGAGAGATCGTACCAA 58.153 50.000 0.00 0.00 0.00 3.67
677 702 7.820648 ACATAACAAAAATGGCTGAGTTAGAG 58.179 34.615 0.00 0.00 0.00 2.43
684 709 6.597672 ACTCGATACATAACAAAAATGGCTGA 59.402 34.615 0.00 0.00 0.00 4.26
699 724 1.263484 CGCTCGGTGTACTCGATACAT 59.737 52.381 11.13 0.00 45.59 2.29
742 776 7.459486 GTTTTGTGTAGATAGATGAGTGCAAG 58.541 38.462 0.00 0.00 0.00 4.01
743 777 6.090763 CGTTTTGTGTAGATAGATGAGTGCAA 59.909 38.462 0.00 0.00 0.00 4.08
744 778 5.576774 CGTTTTGTGTAGATAGATGAGTGCA 59.423 40.000 0.00 0.00 0.00 4.57
745 779 5.805486 TCGTTTTGTGTAGATAGATGAGTGC 59.195 40.000 0.00 0.00 0.00 4.40
746 780 7.008719 CAGTCGTTTTGTGTAGATAGATGAGTG 59.991 40.741 0.00 0.00 0.00 3.51
747 781 7.030165 CAGTCGTTTTGTGTAGATAGATGAGT 58.970 38.462 0.00 0.00 0.00 3.41
748 782 7.030165 ACAGTCGTTTTGTGTAGATAGATGAG 58.970 38.462 0.00 0.00 0.00 2.90
749 783 6.920817 ACAGTCGTTTTGTGTAGATAGATGA 58.079 36.000 0.00 0.00 0.00 2.92
750 784 7.582435 AACAGTCGTTTTGTGTAGATAGATG 57.418 36.000 0.00 0.00 28.09 2.90
805 840 1.510383 GCATGGCGGCATTTGTGTA 59.490 52.632 23.47 0.00 0.00 2.90
823 858 0.320334 TAGTCACACGTGTGCATGGG 60.320 55.000 37.70 18.21 45.25 4.00
824 859 1.507562 TTAGTCACACGTGTGCATGG 58.492 50.000 37.70 18.92 45.25 3.66
825 860 3.811722 AATTAGTCACACGTGTGCATG 57.188 42.857 37.70 19.34 45.25 4.06
826 861 4.994852 ACTTAATTAGTCACACGTGTGCAT 59.005 37.500 37.70 29.67 45.25 3.96
827 862 4.373527 ACTTAATTAGTCACACGTGTGCA 58.626 39.130 37.70 25.36 45.25 4.57
828 863 4.985044 ACTTAATTAGTCACACGTGTGC 57.015 40.909 37.70 31.04 45.25 4.57
869 918 1.153489 GCGAGAATCAGCTGCAGGA 60.153 57.895 17.12 5.39 33.14 3.86
897 946 7.704578 AGCTGCTTCGAGGAGTTTATATATA 57.295 36.000 0.00 0.00 35.94 0.86
898 947 6.597832 AGCTGCTTCGAGGAGTTTATATAT 57.402 37.500 0.00 0.00 35.94 0.86
1007 1077 0.666274 CACGACTACAAGCTTGGCGA 60.666 55.000 29.18 13.66 0.00 5.54
1302 1417 2.167219 CGACAGCGCCACGATCATT 61.167 57.895 2.29 0.00 0.00 2.57
1534 1649 1.528309 GGCCGGGGAATACATGGTG 60.528 63.158 2.18 0.00 0.00 4.17
1620 1735 1.447317 ATACGTACGTACCCAGGGCG 61.447 60.000 28.99 4.40 33.01 6.13
1654 1772 1.198397 GTTGACAACGACACTCGCG 59.802 57.895 0.00 0.00 45.12 5.87
1677 1798 1.033746 TCGACAAGCTACCTACCCGG 61.034 60.000 0.00 0.00 39.35 5.73
1746 1906 2.199236 GAGTACCAAGATAAACCCGCG 58.801 52.381 0.00 0.00 0.00 6.46
1761 1921 3.059051 CGCGTGGATCTTAGTAGGAGTAC 60.059 52.174 0.00 0.00 0.00 2.73
1841 2001 7.553334 TCTTACCGTGAAATATGGGATATAGC 58.447 38.462 0.00 0.00 39.98 2.97
1842 2002 8.967918 TCTCTTACCGTGAAATATGGGATATAG 58.032 37.037 0.00 0.00 39.98 1.31
1843 2003 8.888836 TCTCTTACCGTGAAATATGGGATATA 57.111 34.615 0.00 0.00 39.98 0.86
1844 2004 7.792364 TCTCTTACCGTGAAATATGGGATAT 57.208 36.000 0.00 0.00 39.98 1.63
1845 2005 7.362660 CGATCTCTTACCGTGAAATATGGGATA 60.363 40.741 0.00 0.00 39.98 2.59
1846 2006 6.572509 CGATCTCTTACCGTGAAATATGGGAT 60.573 42.308 0.00 0.00 39.98 3.85
1847 2007 5.278808 CGATCTCTTACCGTGAAATATGGGA 60.279 44.000 0.00 0.00 39.98 4.37
1848 2008 4.923871 CGATCTCTTACCGTGAAATATGGG 59.076 45.833 0.00 0.00 39.98 4.00
1849 2009 4.386049 GCGATCTCTTACCGTGAAATATGG 59.614 45.833 0.00 0.00 41.55 2.74
1850 2010 5.223382 AGCGATCTCTTACCGTGAAATATG 58.777 41.667 0.00 0.00 0.00 1.78
1851 2011 5.455056 AGCGATCTCTTACCGTGAAATAT 57.545 39.130 0.00 0.00 0.00 1.28
1852 2012 4.913335 AGCGATCTCTTACCGTGAAATA 57.087 40.909 0.00 0.00 0.00 1.40
1853 2013 3.802948 AGCGATCTCTTACCGTGAAAT 57.197 42.857 0.00 0.00 0.00 2.17
1854 2014 4.418392 GTTAGCGATCTCTTACCGTGAAA 58.582 43.478 0.00 0.00 0.00 2.69
1855 2015 3.181493 GGTTAGCGATCTCTTACCGTGAA 60.181 47.826 5.21 0.00 0.00 3.18
1856 2016 2.357009 GGTTAGCGATCTCTTACCGTGA 59.643 50.000 5.21 0.00 0.00 4.35
1857 2017 2.098607 TGGTTAGCGATCTCTTACCGTG 59.901 50.000 14.37 0.00 0.00 4.94
1858 2018 2.358267 CTGGTTAGCGATCTCTTACCGT 59.642 50.000 14.37 0.00 0.00 4.83
1859 2019 2.287668 CCTGGTTAGCGATCTCTTACCG 60.288 54.545 14.37 9.84 0.00 4.02
1860 2020 2.546162 GCCTGGTTAGCGATCTCTTACC 60.546 54.545 12.86 12.86 0.00 2.85
1861 2021 2.546162 GGCCTGGTTAGCGATCTCTTAC 60.546 54.545 0.00 0.00 0.00 2.34
1862 2022 1.687123 GGCCTGGTTAGCGATCTCTTA 59.313 52.381 0.00 0.00 0.00 2.10
1863 2023 0.466124 GGCCTGGTTAGCGATCTCTT 59.534 55.000 0.00 0.00 0.00 2.85
1864 2024 0.397816 AGGCCTGGTTAGCGATCTCT 60.398 55.000 3.11 0.00 0.00 3.10
1865 2025 0.249657 CAGGCCTGGTTAGCGATCTC 60.250 60.000 26.14 0.00 0.00 2.75
1866 2026 0.978146 ACAGGCCTGGTTAGCGATCT 60.978 55.000 35.42 8.61 34.19 2.75
1867 2027 0.530870 GACAGGCCTGGTTAGCGATC 60.531 60.000 35.42 17.90 34.19 3.69
1868 2028 1.522569 GACAGGCCTGGTTAGCGAT 59.477 57.895 35.42 13.06 34.19 4.58
1869 2029 2.978824 GACAGGCCTGGTTAGCGA 59.021 61.111 35.42 0.00 34.19 4.93
1870 2030 2.509336 CGACAGGCCTGGTTAGCG 60.509 66.667 35.42 24.31 34.19 4.26
1871 2031 2.820037 GCGACAGGCCTGGTTAGC 60.820 66.667 35.42 27.70 34.80 3.09
1880 2040 2.203070 CCATACCAGGCGACAGGC 60.203 66.667 0.00 0.00 41.60 4.85
1881 2041 0.469917 ATTCCATACCAGGCGACAGG 59.530 55.000 0.00 0.00 43.96 4.00
1882 2042 3.329386 CATATTCCATACCAGGCGACAG 58.671 50.000 0.00 0.00 0.00 3.51
1883 2043 2.549992 GCATATTCCATACCAGGCGACA 60.550 50.000 0.00 0.00 0.00 4.35
1884 2044 2.076863 GCATATTCCATACCAGGCGAC 58.923 52.381 0.00 0.00 0.00 5.19
1885 2045 1.977854 AGCATATTCCATACCAGGCGA 59.022 47.619 0.00 0.00 0.00 5.54
1886 2046 2.479566 AGCATATTCCATACCAGGCG 57.520 50.000 0.00 0.00 0.00 5.52
1887 2047 6.830912 TGATATAGCATATTCCATACCAGGC 58.169 40.000 0.00 0.00 0.00 4.85
1996 2199 2.099263 CGCCCTCGAATAAGAAGACAGA 59.901 50.000 0.00 0.00 38.10 3.41
2004 2207 2.030981 GGTACTCTCGCCCTCGAATAAG 60.031 54.545 0.00 0.00 44.98 1.73
2005 2208 1.952296 GGTACTCTCGCCCTCGAATAA 59.048 52.381 0.00 0.00 44.98 1.40
2006 2209 1.602311 GGTACTCTCGCCCTCGAATA 58.398 55.000 0.00 0.00 44.98 1.75
2032 2235 0.802494 GCCACGTGAAAATGGACGAT 59.198 50.000 19.30 0.00 38.34 3.73
2124 2327 2.105128 CCGTCATGGAGCTCCGAC 59.895 66.667 27.43 25.29 42.00 4.79
2165 2368 3.131478 CGGCCCATGACGGTTTCC 61.131 66.667 0.00 0.00 0.00 3.13
2166 2369 3.131478 CCGGCCCATGACGGTTTC 61.131 66.667 13.19 0.00 44.85 2.78
2222 2425 3.775654 GTCCAGCGTGAGAGGGGG 61.776 72.222 0.00 0.00 0.00 5.40
2223 2426 2.513026 CTTGTCCAGCGTGAGAGGGG 62.513 65.000 0.00 0.00 0.00 4.79
2224 2427 1.079543 CTTGTCCAGCGTGAGAGGG 60.080 63.158 0.00 0.00 0.00 4.30
2225 2428 1.739562 GCTTGTCCAGCGTGAGAGG 60.740 63.158 0.00 0.00 39.29 3.69
2226 2429 3.867771 GCTTGTCCAGCGTGAGAG 58.132 61.111 0.00 0.00 39.29 3.20
2235 2438 1.456705 GGTTGGGTTGGCTTGTCCA 60.457 57.895 0.00 0.00 44.85 4.02
2236 2439 2.207229 GGGTTGGGTTGGCTTGTCC 61.207 63.158 0.00 0.00 0.00 4.02
2237 2440 2.561037 CGGGTTGGGTTGGCTTGTC 61.561 63.158 0.00 0.00 0.00 3.18
2238 2441 2.520741 CGGGTTGGGTTGGCTTGT 60.521 61.111 0.00 0.00 0.00 3.16
2239 2442 2.520741 ACGGGTTGGGTTGGCTTG 60.521 61.111 0.00 0.00 0.00 4.01
2240 2443 2.203437 GACGGGTTGGGTTGGCTT 60.203 61.111 0.00 0.00 0.00 4.35
2241 2444 3.175710 AGACGGGTTGGGTTGGCT 61.176 61.111 0.00 0.00 0.00 4.75
2242 2445 2.983592 CAGACGGGTTGGGTTGGC 60.984 66.667 0.00 0.00 0.00 4.52
2243 2446 1.599797 GACAGACGGGTTGGGTTGG 60.600 63.158 0.00 0.00 0.00 3.77
2244 2447 1.959226 CGACAGACGGGTTGGGTTG 60.959 63.158 0.00 0.00 38.46 3.77
2245 2448 2.424302 CGACAGACGGGTTGGGTT 59.576 61.111 0.00 0.00 38.46 4.11
2254 2457 1.371267 TTGAAGACGCCGACAGACG 60.371 57.895 0.00 0.00 42.18 4.18
2255 2458 1.282930 GGTTGAAGACGCCGACAGAC 61.283 60.000 0.00 0.00 0.00 3.51
2256 2459 1.006571 GGTTGAAGACGCCGACAGA 60.007 57.895 0.00 0.00 0.00 3.41
2257 2460 0.242825 TAGGTTGAAGACGCCGACAG 59.757 55.000 0.00 0.00 0.00 3.51
2258 2461 0.038892 GTAGGTTGAAGACGCCGACA 60.039 55.000 0.00 0.00 0.00 4.35
2259 2462 1.069378 CGTAGGTTGAAGACGCCGAC 61.069 60.000 0.00 0.00 0.00 4.79
2260 2463 1.210931 CGTAGGTTGAAGACGCCGA 59.789 57.895 0.00 0.00 0.00 5.54
2261 2464 1.069378 GACGTAGGTTGAAGACGCCG 61.069 60.000 0.00 0.00 40.19 6.46
2262 2465 1.069378 CGACGTAGGTTGAAGACGCC 61.069 60.000 0.00 0.00 40.19 5.68
2263 2466 1.069378 CCGACGTAGGTTGAAGACGC 61.069 60.000 6.53 0.00 40.19 5.19
2264 2467 0.455633 CCCGACGTAGGTTGAAGACG 60.456 60.000 14.00 0.00 42.22 4.18
2265 2468 0.735287 GCCCGACGTAGGTTGAAGAC 60.735 60.000 14.00 0.00 0.00 3.01
2266 2469 1.180456 TGCCCGACGTAGGTTGAAGA 61.180 55.000 14.00 0.00 0.00 2.87
2267 2470 0.736325 CTGCCCGACGTAGGTTGAAG 60.736 60.000 14.00 0.00 0.00 3.02
2268 2471 1.290955 CTGCCCGACGTAGGTTGAA 59.709 57.895 14.00 0.00 0.00 2.69
2269 2472 2.642254 CCTGCCCGACGTAGGTTGA 61.642 63.158 14.00 0.00 39.43 3.18
2270 2473 2.125673 CCTGCCCGACGTAGGTTG 60.126 66.667 14.00 0.20 39.43 3.77
2274 2477 2.001361 ATCGAACCTGCCCGACGTAG 62.001 60.000 0.00 0.00 37.64 3.51
2275 2478 1.996786 GATCGAACCTGCCCGACGTA 61.997 60.000 0.00 0.00 37.64 3.57
2276 2479 3.352338 GATCGAACCTGCCCGACGT 62.352 63.158 0.00 0.00 37.64 4.34
2277 2480 2.582498 GATCGAACCTGCCCGACG 60.582 66.667 0.00 0.00 37.64 5.12
2278 2481 2.582498 CGATCGAACCTGCCCGAC 60.582 66.667 10.26 0.00 37.64 4.79
2279 2482 4.508128 GCGATCGAACCTGCCCGA 62.508 66.667 21.57 0.00 39.25 5.14
2303 2647 3.218209 GAAACACACACGCGACCCG 62.218 63.158 15.93 0.00 44.21 5.28
2312 2656 2.593148 ATGCGGGCGAAACACACA 60.593 55.556 0.00 0.00 0.00 3.72
2378 2722 1.819632 GCACCACCTCCTATTGCGG 60.820 63.158 0.00 0.00 0.00 5.69
2382 2726 0.249398 GTGACGCACCACCTCCTATT 59.751 55.000 0.00 0.00 0.00 1.73
2394 2738 2.342279 GTAGGCAGGTGTGACGCA 59.658 61.111 0.00 0.00 36.45 5.24
2396 2740 2.809601 GCGTAGGCAGGTGTGACG 60.810 66.667 1.75 0.00 36.45 4.35
2449 2798 1.597027 AACGAAACCTGACCGCCTG 60.597 57.895 0.00 0.00 0.00 4.85
2453 2802 0.249741 AGGACAACGAAACCTGACCG 60.250 55.000 0.00 0.00 33.34 4.79
2480 2829 1.620822 CCCCAACCAGAGACAAAAGG 58.379 55.000 0.00 0.00 0.00 3.11
2485 2834 1.846124 GGACCCCCAACCAGAGACA 60.846 63.158 0.00 0.00 0.00 3.41
2486 2835 1.423794 TTGGACCCCCAACCAGAGAC 61.424 60.000 0.00 0.00 46.94 3.36
2487 2836 1.073319 TTGGACCCCCAACCAGAGA 60.073 57.895 0.00 0.00 46.94 3.10
2488 2837 3.587840 TTGGACCCCCAACCAGAG 58.412 61.111 0.00 0.00 46.94 3.35
2513 2862 2.604382 GCCATGCCAACCCAAGGT 60.604 61.111 0.00 0.00 37.65 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.