Multiple sequence alignment - TraesCS1A01G167600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G167600 chr1A 100.000 2462 0 0 1 2462 300397097 300394636 0.000000e+00 4547.0
1 TraesCS1A01G167600 chr3A 95.405 740 30 4 1 739 571325150 571324414 0.000000e+00 1175.0
2 TraesCS1A01G167600 chr3A 94.324 740 27 4 1 739 587409883 587410608 0.000000e+00 1120.0
3 TraesCS1A01G167600 chr3A 92.617 745 36 7 2 742 430781914 430782643 0.000000e+00 1053.0
4 TraesCS1A01G167600 chr3A 98.113 53 1 0 2410 2462 27292177 27292229 2.610000e-15 93.5
5 TraesCS1A01G167600 chr3A 98.077 52 1 0 2411 2462 738125064 738125013 9.380000e-15 91.6
6 TraesCS1A01G167600 chr1D 96.195 657 16 5 887 1537 247241206 247241859 0.000000e+00 1066.0
7 TraesCS1A01G167600 chr1D 96.498 257 8 1 1543 1798 247241939 247242195 8.140000e-115 424.0
8 TraesCS1A01G167600 chr1D 84.706 170 13 4 2256 2413 247242835 247243003 9.110000e-35 158.0
9 TraesCS1A01G167600 chr1D 83.133 166 12 7 1951 2104 247242191 247242352 1.190000e-28 137.0
10 TraesCS1A01G167600 chr1D 82.317 164 21 7 1807 1964 273820796 273820957 4.270000e-28 135.0
11 TraesCS1A01G167600 chr6A 92.091 746 45 8 1 742 151486959 151487694 0.000000e+00 1038.0
12 TraesCS1A01G167600 chr6A 82.390 159 26 1 1795 1951 520357138 520357296 1.190000e-28 137.0
13 TraesCS1A01G167600 chr2B 92.183 742 41 6 1 739 648643821 648643094 0.000000e+00 1033.0
14 TraesCS1A01G167600 chr2B 91.622 752 43 9 1 746 753010936 753011673 0.000000e+00 1022.0
15 TraesCS1A01G167600 chr2B 86.184 152 14 4 1807 1951 43427285 43427134 9.110000e-35 158.0
16 TraesCS1A01G167600 chr2B 100.000 50 0 0 2413 2462 384033844 384033893 2.610000e-15 93.5
17 TraesCS1A01G167600 chr1B 95.253 653 22 8 834 1482 330625937 330625290 0.000000e+00 1026.0
18 TraesCS1A01G167600 chr1B 88.519 270 22 3 1537 1797 330625290 330625021 3.950000e-83 318.0
19 TraesCS1A01G167600 chr1B 89.216 102 10 1 2313 2413 330602156 330602055 2.570000e-25 126.0
20 TraesCS1A01G167600 chrUn 91.722 749 40 13 1 742 434245500 434244767 0.000000e+00 1020.0
21 TraesCS1A01G167600 chrUn 91.722 749 40 13 1 742 445487690 445486957 0.000000e+00 1020.0
22 TraesCS1A01G167600 chr5B 91.333 750 44 10 1 743 313960732 313959997 0.000000e+00 1005.0
23 TraesCS1A01G167600 chr5B 91.375 742 45 8 1 736 459464677 459465405 0.000000e+00 998.0
24 TraesCS1A01G167600 chr3B 91.409 745 44 9 1 739 741226412 741225682 0.000000e+00 1003.0
25 TraesCS1A01G167600 chr3B 100.000 51 0 0 2412 2462 540449431 540449381 7.250000e-16 95.3
26 TraesCS1A01G167600 chr3B 100.000 50 0 0 2413 2462 258718984 258718935 2.610000e-15 93.5
27 TraesCS1A01G167600 chr2A 93.023 559 37 2 185 743 36195322 36194766 0.000000e+00 815.0
28 TraesCS1A01G167600 chr2A 90.423 355 32 2 392 745 749343094 749343447 1.330000e-127 466.0
29 TraesCS1A01G167600 chr2A 84.564 149 21 2 1807 1953 568397990 568397842 1.970000e-31 147.0
30 TraesCS1A01G167600 chr4A 89.216 612 45 13 864 1468 29079749 29080346 0.000000e+00 745.0
31 TraesCS1A01G167600 chr4A 83.590 195 22 6 1608 1798 29080361 29080549 9.050000e-40 174.0
32 TraesCS1A01G167600 chr4A 83.133 166 19 8 1795 1953 75354829 75354992 2.550000e-30 143.0
33 TraesCS1A01G167600 chr4A 83.333 162 20 6 1795 1950 93977127 93977287 2.550000e-30 143.0
34 TraesCS1A01G167600 chr4A 100.000 50 0 0 2413 2462 499001878 499001927 2.610000e-15 93.5
35 TraesCS1A01G167600 chr4B 89.052 612 43 13 864 1468 544602788 544603382 0.000000e+00 737.0
36 TraesCS1A01G167600 chr4D 88.889 594 40 15 864 1437 439784643 439785230 0.000000e+00 708.0
37 TraesCS1A01G167600 chr4D 83.230 161 22 3 1795 1950 62231381 62231221 2.550000e-30 143.0
38 TraesCS1A01G167600 chr2D 85.093 161 20 3 1795 1952 145374438 145374597 7.050000e-36 161.0
39 TraesCS1A01G167600 chr2D 84.146 164 18 6 1795 1952 22200812 22200973 4.240000e-33 152.0
40 TraesCS1A01G167600 chr5A 100.000 51 0 0 2412 2462 591484316 591484366 7.250000e-16 95.3
41 TraesCS1A01G167600 chr7B 98.077 52 1 0 2411 2462 657556410 657556359 9.380000e-15 91.6
42 TraesCS1A01G167600 chr7A 98.077 52 1 0 2411 2462 371395851 371395800 9.380000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G167600 chr1A 300394636 300397097 2461 True 4547.00 4547 100.000 1 2462 1 chr1A.!!$R1 2461
1 TraesCS1A01G167600 chr3A 571324414 571325150 736 True 1175.00 1175 95.405 1 739 1 chr3A.!!$R1 738
2 TraesCS1A01G167600 chr3A 587409883 587410608 725 False 1120.00 1120 94.324 1 739 1 chr3A.!!$F3 738
3 TraesCS1A01G167600 chr3A 430781914 430782643 729 False 1053.00 1053 92.617 2 742 1 chr3A.!!$F2 740
4 TraesCS1A01G167600 chr1D 247241206 247243003 1797 False 446.25 1066 90.133 887 2413 4 chr1D.!!$F2 1526
5 TraesCS1A01G167600 chr6A 151486959 151487694 735 False 1038.00 1038 92.091 1 742 1 chr6A.!!$F1 741
6 TraesCS1A01G167600 chr2B 648643094 648643821 727 True 1033.00 1033 92.183 1 739 1 chr2B.!!$R2 738
7 TraesCS1A01G167600 chr2B 753010936 753011673 737 False 1022.00 1022 91.622 1 746 1 chr2B.!!$F2 745
8 TraesCS1A01G167600 chr1B 330625021 330625937 916 True 672.00 1026 91.886 834 1797 2 chr1B.!!$R2 963
9 TraesCS1A01G167600 chrUn 434244767 434245500 733 True 1020.00 1020 91.722 1 742 1 chrUn.!!$R1 741
10 TraesCS1A01G167600 chrUn 445486957 445487690 733 True 1020.00 1020 91.722 1 742 1 chrUn.!!$R2 741
11 TraesCS1A01G167600 chr5B 313959997 313960732 735 True 1005.00 1005 91.333 1 743 1 chr5B.!!$R1 742
12 TraesCS1A01G167600 chr5B 459464677 459465405 728 False 998.00 998 91.375 1 736 1 chr5B.!!$F1 735
13 TraesCS1A01G167600 chr3B 741225682 741226412 730 True 1003.00 1003 91.409 1 739 1 chr3B.!!$R3 738
14 TraesCS1A01G167600 chr2A 36194766 36195322 556 True 815.00 815 93.023 185 743 1 chr2A.!!$R1 558
15 TraesCS1A01G167600 chr4A 29079749 29080549 800 False 459.50 745 86.403 864 1798 2 chr4A.!!$F4 934
16 TraesCS1A01G167600 chr4B 544602788 544603382 594 False 737.00 737 89.052 864 1468 1 chr4B.!!$F1 604
17 TraesCS1A01G167600 chr4D 439784643 439785230 587 False 708.00 708 88.889 864 1437 1 chr4D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 408 0.676782 GCCATGGAAGCTACAACCGT 60.677 55.0 18.4 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2137 0.035439 ATTTGAATCGACGGTGGCCT 60.035 50.0 3.32 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 5.856156 TCTATCACCGGTTGTAACTTTTCA 58.144 37.500 2.97 0.00 0.00 2.69
370 377 4.351938 CAGTCGTCGCCACCGGAA 62.352 66.667 9.46 0.00 34.56 4.30
401 408 0.676782 GCCATGGAAGCTACAACCGT 60.677 55.000 18.40 0.00 0.00 4.83
531 540 1.081277 GACCAGGGAAGAGGAGGGT 59.919 63.158 0.00 0.00 0.00 4.34
711 724 3.417224 GACCGGCCGAAACGTTCC 61.417 66.667 30.73 0.48 0.00 3.62
712 725 4.994471 ACCGGCCGAAACGTTCCC 62.994 66.667 30.73 0.00 0.00 3.97
716 729 4.685467 GCCGAAACGTTCCCCCGA 62.685 66.667 0.00 0.00 0.00 5.14
739 752 4.271816 CGACGCCTAGCATCGCCT 62.272 66.667 0.00 0.00 37.45 5.52
746 759 2.494059 GCCTAGCATCGCCTTTATTGA 58.506 47.619 0.00 0.00 0.00 2.57
747 760 2.878406 GCCTAGCATCGCCTTTATTGAA 59.122 45.455 0.00 0.00 0.00 2.69
748 761 3.315191 GCCTAGCATCGCCTTTATTGAAA 59.685 43.478 0.00 0.00 0.00 2.69
749 762 4.789802 GCCTAGCATCGCCTTTATTGAAAC 60.790 45.833 0.00 0.00 0.00 2.78
750 763 3.782889 AGCATCGCCTTTATTGAAACC 57.217 42.857 0.00 0.00 0.00 3.27
751 764 2.427095 AGCATCGCCTTTATTGAAACCC 59.573 45.455 0.00 0.00 0.00 4.11
752 765 2.427095 GCATCGCCTTTATTGAAACCCT 59.573 45.455 0.00 0.00 0.00 4.34
753 766 3.119137 GCATCGCCTTTATTGAAACCCTT 60.119 43.478 0.00 0.00 0.00 3.95
754 767 4.672409 CATCGCCTTTATTGAAACCCTTC 58.328 43.478 0.00 0.00 0.00 3.46
755 768 3.086282 TCGCCTTTATTGAAACCCTTCC 58.914 45.455 0.00 0.00 0.00 3.46
756 769 2.823154 CGCCTTTATTGAAACCCTTCCA 59.177 45.455 0.00 0.00 0.00 3.53
757 770 3.257127 CGCCTTTATTGAAACCCTTCCAA 59.743 43.478 0.00 0.00 0.00 3.53
758 771 4.566004 GCCTTTATTGAAACCCTTCCAAC 58.434 43.478 0.00 0.00 0.00 3.77
759 772 4.562757 GCCTTTATTGAAACCCTTCCAACC 60.563 45.833 0.00 0.00 0.00 3.77
760 773 4.591072 CCTTTATTGAAACCCTTCCAACCA 59.409 41.667 0.00 0.00 0.00 3.67
761 774 5.071115 CCTTTATTGAAACCCTTCCAACCAA 59.929 40.000 0.00 0.00 0.00 3.67
762 775 6.408662 CCTTTATTGAAACCCTTCCAACCAAA 60.409 38.462 0.00 0.00 0.00 3.28
763 776 3.897141 TTGAAACCCTTCCAACCAAAC 57.103 42.857 0.00 0.00 0.00 2.93
764 777 2.821437 TGAAACCCTTCCAACCAAACA 58.179 42.857 0.00 0.00 0.00 2.83
765 778 3.379452 TGAAACCCTTCCAACCAAACAT 58.621 40.909 0.00 0.00 0.00 2.71
766 779 4.547671 TGAAACCCTTCCAACCAAACATA 58.452 39.130 0.00 0.00 0.00 2.29
767 780 4.962995 TGAAACCCTTCCAACCAAACATAA 59.037 37.500 0.00 0.00 0.00 1.90
768 781 5.425539 TGAAACCCTTCCAACCAAACATAAA 59.574 36.000 0.00 0.00 0.00 1.40
769 782 4.948341 ACCCTTCCAACCAAACATAAAC 57.052 40.909 0.00 0.00 0.00 2.01
770 783 4.552674 ACCCTTCCAACCAAACATAAACT 58.447 39.130 0.00 0.00 0.00 2.66
771 784 5.707495 ACCCTTCCAACCAAACATAAACTA 58.293 37.500 0.00 0.00 0.00 2.24
772 785 6.137559 ACCCTTCCAACCAAACATAAACTAA 58.862 36.000 0.00 0.00 0.00 2.24
773 786 6.612049 ACCCTTCCAACCAAACATAAACTAAA 59.388 34.615 0.00 0.00 0.00 1.85
774 787 7.125963 ACCCTTCCAACCAAACATAAACTAAAA 59.874 33.333 0.00 0.00 0.00 1.52
775 788 7.988028 CCCTTCCAACCAAACATAAACTAAAAA 59.012 33.333 0.00 0.00 0.00 1.94
831 844 9.668497 AAATACTCCCTTCAGTAAGATGTAAAC 57.332 33.333 0.00 0.00 34.37 2.01
832 845 5.721232 ACTCCCTTCAGTAAGATGTAAACG 58.279 41.667 0.00 0.00 34.37 3.60
855 868 8.203681 ACGCTCTTATATTTATTTAGAGGGGT 57.796 34.615 19.20 10.14 45.08 4.95
903 916 4.321008 CCATCCAACGATACGCTACTGTAT 60.321 45.833 0.00 0.00 37.74 2.29
909 922 6.694411 CCAACGATACGCTACTGTATTAAAGT 59.306 38.462 0.00 0.00 35.24 2.66
968 988 1.453155 CAGGTCGGACCCAATCAAAG 58.547 55.000 23.21 0.53 39.75 2.77
1209 1248 1.811679 GTGCGAGTTCCTGCTAGCC 60.812 63.158 13.29 0.00 36.49 3.93
1363 1402 1.186200 ACGCCTCAGCTTCTACATCA 58.814 50.000 0.00 0.00 36.60 3.07
1514 1562 2.423185 CGGTGATTTGCCTTGCTATTCA 59.577 45.455 0.00 0.00 0.00 2.57
1519 1567 6.698766 GGTGATTTGCCTTGCTATTCAATTAG 59.301 38.462 0.00 0.00 33.57 1.73
1540 1588 4.597004 AGTGCCAGTGTTAGCTACTACTA 58.403 43.478 8.35 0.00 0.00 1.82
1706 1837 5.028549 ACGATTCCAGTTTAGCATGAGAT 57.971 39.130 0.00 0.00 0.00 2.75
1751 1884 6.124088 AGCCAGCGTTTATCTAGAATTTTG 57.876 37.500 0.00 0.00 0.00 2.44
1770 1903 3.173668 TGTTGAGATGTACCGGTATGC 57.826 47.619 19.19 10.21 0.00 3.14
1785 1918 4.097135 CCGGTATGCATTTATTGGTCACAA 59.903 41.667 3.54 0.00 41.59 3.33
1798 1931 9.853555 TTTATTGGTCACAAATTAGCTTATGTG 57.146 29.630 1.24 1.24 43.42 3.21
1799 1932 5.895636 TGGTCACAAATTAGCTTATGTGG 57.104 39.130 7.75 0.00 42.56 4.17
1800 1933 5.321102 TGGTCACAAATTAGCTTATGTGGT 58.679 37.500 7.75 0.00 42.56 4.16
1801 1934 5.414454 TGGTCACAAATTAGCTTATGTGGTC 59.586 40.000 7.75 7.65 42.56 4.02
1802 1935 5.648092 GGTCACAAATTAGCTTATGTGGTCT 59.352 40.000 7.75 0.00 42.56 3.85
1803 1936 6.403636 GGTCACAAATTAGCTTATGTGGTCTG 60.404 42.308 7.75 0.00 42.56 3.51
1804 1937 6.149474 GTCACAAATTAGCTTATGTGGTCTGT 59.851 38.462 7.75 0.00 42.56 3.41
1805 1938 6.371548 TCACAAATTAGCTTATGTGGTCTGTC 59.628 38.462 7.75 0.00 42.56 3.51
1806 1939 6.372659 CACAAATTAGCTTATGTGGTCTGTCT 59.627 38.462 7.75 0.00 39.51 3.41
1807 1940 7.549134 CACAAATTAGCTTATGTGGTCTGTCTA 59.451 37.037 7.75 0.00 39.51 2.59
1808 1941 8.267894 ACAAATTAGCTTATGTGGTCTGTCTAT 58.732 33.333 7.75 0.00 0.00 1.98
1809 1942 9.764363 CAAATTAGCTTATGTGGTCTGTCTATA 57.236 33.333 0.00 0.00 0.00 1.31
1810 1943 9.988815 AAATTAGCTTATGTGGTCTGTCTATAG 57.011 33.333 0.00 0.00 0.00 1.31
1811 1944 5.461032 AGCTTATGTGGTCTGTCTATAGC 57.539 43.478 0.00 0.00 0.00 2.97
1812 1945 4.895889 AGCTTATGTGGTCTGTCTATAGCA 59.104 41.667 0.00 0.00 0.00 3.49
1813 1946 4.985409 GCTTATGTGGTCTGTCTATAGCAC 59.015 45.833 0.00 0.00 42.86 4.40
1816 1949 4.655762 TGTGGTCTGTCTATAGCACATC 57.344 45.455 3.45 3.44 46.05 3.06
1817 1950 4.281657 TGTGGTCTGTCTATAGCACATCT 58.718 43.478 3.45 0.00 46.05 2.90
1818 1951 5.445964 TGTGGTCTGTCTATAGCACATCTA 58.554 41.667 3.45 0.18 46.05 1.98
1819 1952 5.891551 TGTGGTCTGTCTATAGCACATCTAA 59.108 40.000 3.45 0.00 46.05 2.10
1820 1953 6.039829 TGTGGTCTGTCTATAGCACATCTAAG 59.960 42.308 3.45 0.00 46.05 2.18
1821 1954 6.039941 GTGGTCTGTCTATAGCACATCTAAGT 59.960 42.308 0.00 0.00 42.28 2.24
1822 1955 6.039829 TGGTCTGTCTATAGCACATCTAAGTG 59.960 42.308 0.00 0.00 42.37 3.16
1823 1956 6.263392 GGTCTGTCTATAGCACATCTAAGTGA 59.737 42.308 0.00 0.00 42.05 3.41
1824 1957 7.040062 GGTCTGTCTATAGCACATCTAAGTGAT 60.040 40.741 0.00 0.00 42.05 3.06
1825 1958 8.356657 GTCTGTCTATAGCACATCTAAGTGATT 58.643 37.037 0.00 0.00 42.05 2.57
1826 1959 8.572185 TCTGTCTATAGCACATCTAAGTGATTC 58.428 37.037 0.00 0.00 42.05 2.52
1827 1960 8.237811 TGTCTATAGCACATCTAAGTGATTCA 57.762 34.615 0.00 0.00 42.05 2.57
1828 1961 8.695456 TGTCTATAGCACATCTAAGTGATTCAA 58.305 33.333 0.00 0.00 42.05 2.69
1829 1962 9.703892 GTCTATAGCACATCTAAGTGATTCAAT 57.296 33.333 0.00 0.00 42.05 2.57
1830 1963 9.920133 TCTATAGCACATCTAAGTGATTCAATC 57.080 33.333 0.00 0.00 42.05 2.67
1831 1964 9.702494 CTATAGCACATCTAAGTGATTCAATCA 57.298 33.333 0.00 0.00 42.05 2.57
1832 1965 8.969260 ATAGCACATCTAAGTGATTCAATCAA 57.031 30.769 0.29 0.00 41.69 2.57
1833 1966 7.692460 AGCACATCTAAGTGATTCAATCAAA 57.308 32.000 0.29 0.00 41.69 2.69
1834 1967 8.289939 AGCACATCTAAGTGATTCAATCAAAT 57.710 30.769 0.29 0.00 41.69 2.32
1835 1968 9.399797 AGCACATCTAAGTGATTCAATCAAATA 57.600 29.630 0.29 0.00 41.69 1.40
1875 2008 9.927081 AGGAAAAGAAAATATCCACACATATCT 57.073 29.630 0.00 0.00 34.30 1.98
1881 2014 9.857656 AGAAAATATCCACACATATCTTCATGT 57.142 29.630 0.00 0.00 39.76 3.21
1911 2044 9.797642 ATTAATGACATAGGATTTAGATGTGCA 57.202 29.630 0.00 0.00 33.99 4.57
1912 2045 9.625747 TTAATGACATAGGATTTAGATGTGCAA 57.374 29.630 0.00 0.00 33.99 4.08
1913 2046 8.701908 AATGACATAGGATTTAGATGTGCAAT 57.298 30.769 0.00 0.00 33.99 3.56
1914 2047 9.797642 AATGACATAGGATTTAGATGTGCAATA 57.202 29.630 0.00 0.00 33.99 1.90
1915 2048 8.607441 TGACATAGGATTTAGATGTGCAATAC 57.393 34.615 0.00 0.00 33.99 1.89
1916 2049 8.432013 TGACATAGGATTTAGATGTGCAATACT 58.568 33.333 0.00 0.00 33.99 2.12
1917 2050 9.277783 GACATAGGATTTAGATGTGCAATACTT 57.722 33.333 0.00 0.00 33.99 2.24
1918 2051 9.060347 ACATAGGATTTAGATGTGCAATACTTG 57.940 33.333 0.00 0.00 32.62 3.16
1919 2052 9.060347 CATAGGATTTAGATGTGCAATACTTGT 57.940 33.333 0.00 0.00 0.00 3.16
1920 2053 7.944729 AGGATTTAGATGTGCAATACTTGTT 57.055 32.000 0.00 0.00 0.00 2.83
1921 2054 7.765307 AGGATTTAGATGTGCAATACTTGTTG 58.235 34.615 0.00 0.00 0.00 3.33
1936 2069 8.961092 CAATACTTGTTGCATATCTAAATGTGC 58.039 33.333 0.00 0.78 46.81 4.57
1937 2070 6.764308 ACTTGTTGCATATCTAAATGTGCT 57.236 33.333 8.30 0.00 46.77 4.40
1938 2071 7.161773 ACTTGTTGCATATCTAAATGTGCTT 57.838 32.000 8.30 0.00 46.77 3.91
1939 2072 7.605449 ACTTGTTGCATATCTAAATGTGCTTT 58.395 30.769 8.30 0.00 46.77 3.51
1940 2073 8.739039 ACTTGTTGCATATCTAAATGTGCTTTA 58.261 29.630 8.30 0.00 46.77 1.85
1941 2074 9.571810 CTTGTTGCATATCTAAATGTGCTTTAA 57.428 29.630 8.30 1.57 46.77 1.52
1942 2075 8.909708 TGTTGCATATCTAAATGTGCTTTAAC 57.090 30.769 8.30 5.65 46.77 2.01
1943 2076 8.518702 TGTTGCATATCTAAATGTGCTTTAACA 58.481 29.630 8.30 7.65 46.77 2.41
1944 2077 9.352784 GTTGCATATCTAAATGTGCTTTAACAA 57.647 29.630 8.30 0.00 46.77 2.83
1945 2078 9.920133 TTGCATATCTAAATGTGCTTTAACAAA 57.080 25.926 8.30 0.00 46.77 2.83
1946 2079 9.920133 TGCATATCTAAATGTGCTTTAACAAAA 57.080 25.926 8.30 0.00 46.77 2.44
1954 2087 8.940768 AAATGTGCTTTAACAAAACTGTATGT 57.059 26.923 0.00 0.00 32.81 2.29
1972 2105 8.322091 ACTGTATGTTAATTGTCTAGAAAGCCT 58.678 33.333 0.00 0.00 0.00 4.58
1977 2110 1.064003 TTGTCTAGAAAGCCTGGCCA 58.936 50.000 16.57 4.71 0.00 5.36
1982 2115 2.511218 TCTAGAAAGCCTGGCCAATCAT 59.489 45.455 16.57 0.00 0.00 2.45
1986 2119 2.761786 AAGCCTGGCCAATCATATGT 57.238 45.000 16.57 0.00 0.00 2.29
1987 2120 3.882102 AAGCCTGGCCAATCATATGTA 57.118 42.857 16.57 0.00 0.00 2.29
1988 2121 4.393239 AAGCCTGGCCAATCATATGTAT 57.607 40.909 16.57 0.00 0.00 2.29
1989 2122 3.693807 AGCCTGGCCAATCATATGTATG 58.306 45.455 16.57 3.31 35.04 2.39
1990 2123 2.756760 GCCTGGCCAATCATATGTATGG 59.243 50.000 19.09 19.09 34.50 2.74
1995 2128 4.012374 GGCCAATCATATGTATGGTCAGG 58.988 47.826 21.41 8.44 37.50 3.86
2004 2137 2.112190 TGTATGGTCAGGGTCGCAATA 58.888 47.619 0.00 0.00 0.00 1.90
2005 2138 2.102420 TGTATGGTCAGGGTCGCAATAG 59.898 50.000 0.00 0.00 0.00 1.73
2006 2139 0.469917 ATGGTCAGGGTCGCAATAGG 59.530 55.000 0.00 0.00 0.00 2.57
2007 2140 1.523938 GGTCAGGGTCGCAATAGGC 60.524 63.158 0.00 0.00 39.90 3.93
2008 2141 1.523938 GTCAGGGTCGCAATAGGCC 60.524 63.158 0.00 0.00 40.31 5.19
2043 2182 7.097192 TCAAATCGATAGCTATGGACCATAAC 58.903 38.462 19.27 10.91 0.00 1.89
2069 2214 2.034001 GGACTTTGATAATCGGCGAACG 60.034 50.000 15.93 0.00 46.11 3.95
2092 2237 5.061311 CGTCAGAATTTTTAAGCATGGCAAG 59.939 40.000 0.00 0.00 0.00 4.01
2094 2239 6.646240 GTCAGAATTTTTAAGCATGGCAAGAA 59.354 34.615 0.00 0.00 0.00 2.52
2158 2303 7.936847 AGAGTACAAATTATGTTGTCACAAGGA 59.063 33.333 0.00 0.00 43.63 3.36
2159 2304 7.871853 AGTACAAATTATGTTGTCACAAGGAC 58.128 34.615 0.00 0.00 44.05 3.85
2170 2315 4.813296 GTCACAAGGACGTCAATTTTCT 57.187 40.909 18.91 0.38 36.65 2.52
2174 2319 7.360361 GTCACAAGGACGTCAATTTTCTTTAT 58.640 34.615 18.91 0.00 36.65 1.40
2185 2330 9.352784 CGTCAATTTTCTTTATTAAGAATGGCA 57.647 29.630 7.67 0.00 46.73 4.92
2228 2373 2.096442 GCGGATTTGCCTTGCTTGC 61.096 57.895 0.00 0.00 0.00 4.01
2250 2755 6.397272 TGCTAAATGAAATTGTCATCCCAAC 58.603 36.000 0.00 0.00 46.80 3.77
2253 2758 8.196771 GCTAAATGAAATTGTCATCCCAACATA 58.803 33.333 0.00 0.00 46.80 2.29
2290 2795 7.654022 TGTAAGAAAGGATTTTGTTCCACTT 57.346 32.000 0.00 0.00 39.27 3.16
2295 2800 3.837355 AGGATTTTGTTCCACTTGAGCT 58.163 40.909 0.00 0.00 38.32 4.09
2304 2809 1.273606 TCCACTTGAGCTGACACTAGC 59.726 52.381 0.00 0.00 44.01 3.42
2306 2811 2.354503 CCACTTGAGCTGACACTAGCAT 60.355 50.000 0.00 0.00 46.07 3.79
2309 2814 1.560505 TGAGCTGACACTAGCATCCA 58.439 50.000 0.00 0.00 46.07 3.41
2329 2834 7.680588 GCATCCAAGTTCTTGTTATCTTGATCC 60.681 40.741 10.93 0.00 39.39 3.36
2332 2837 7.391554 TCCAAGTTCTTGTTATCTTGATCCAAG 59.608 37.037 10.93 12.73 42.25 3.61
2353 2858 3.709567 GAGCGTACTCAACCCCCT 58.290 61.111 0.00 0.00 42.93 4.79
2355 2860 1.535687 AGCGTACTCAACCCCCTGT 60.536 57.895 0.00 0.00 0.00 4.00
2384 2901 2.522193 GGACCCCTCTCGGCCTAG 60.522 72.222 0.00 0.00 0.00 3.02
2413 2930 0.982852 CTCAGACATGCCCAGGGGTA 60.983 60.000 7.91 2.07 37.65 3.69
2414 2931 0.982852 TCAGACATGCCCAGGGGTAG 60.983 60.000 7.91 0.00 37.65 3.18
2415 2932 0.982852 CAGACATGCCCAGGGGTAGA 60.983 60.000 7.91 0.00 37.65 2.59
2416 2933 0.983378 AGACATGCCCAGGGGTAGAC 60.983 60.000 7.91 0.00 37.65 2.59
2417 2934 1.984288 GACATGCCCAGGGGTAGACC 61.984 65.000 7.91 0.00 37.65 3.85
2418 2935 1.694169 CATGCCCAGGGGTAGACCT 60.694 63.158 7.91 0.00 43.08 3.85
2424 2941 2.795147 AGGGGTAGACCTGGCCAT 59.205 61.111 5.51 0.00 40.04 4.40
2425 2942 1.384643 AGGGGTAGACCTGGCCATC 60.385 63.158 5.51 0.76 40.04 3.51
2426 2943 2.452937 GGGGTAGACCTGGCCATCC 61.453 68.421 5.51 2.24 40.03 3.51
2427 2944 1.384643 GGGTAGACCTGGCCATCCT 60.385 63.158 5.51 6.39 35.85 3.24
2428 2945 1.411651 GGGTAGACCTGGCCATCCTC 61.412 65.000 5.51 0.39 35.85 3.71
2429 2946 1.411651 GGTAGACCTGGCCATCCTCC 61.412 65.000 5.51 3.74 0.00 4.30
2430 2947 1.457643 TAGACCTGGCCATCCTCCG 60.458 63.158 5.51 0.00 0.00 4.63
2431 2948 2.946988 TAGACCTGGCCATCCTCCGG 62.947 65.000 5.51 5.16 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 7.416890 CCGGTGATAGAGAAAGTTTCATCTAGT 60.417 40.741 17.65 10.57 0.00 2.57
29 31 5.245526 AGTTACAACCGGTGATAGAGAAAGT 59.754 40.000 8.52 0.00 0.00 2.66
34 36 5.929992 TGAAAAGTTACAACCGGTGATAGAG 59.070 40.000 8.52 0.00 0.00 2.43
38 40 4.457949 GGATGAAAAGTTACAACCGGTGAT 59.542 41.667 8.52 0.88 0.00 3.06
58 60 1.683011 CCGTGGAAAGAAGGCATGGAT 60.683 52.381 0.00 0.00 0.00 3.41
344 351 2.983930 GCGACGACTGGAGCTCACT 61.984 63.158 17.19 0.00 0.00 3.41
370 377 2.985282 CATGGCCACCGTTGCAGT 60.985 61.111 8.16 0.00 0.00 4.40
522 531 2.604152 CCTCGCCTACCCTCCTCT 59.396 66.667 0.00 0.00 0.00 3.69
531 540 4.896829 CCGCTCCTCCCTCGCCTA 62.897 72.222 0.00 0.00 0.00 3.93
614 627 2.746671 TCTTCCTCTCGCGAGCGT 60.747 61.111 30.97 0.00 40.74 5.07
739 752 6.070194 TGTTTGGTTGGAAGGGTTTCAATAAA 60.070 34.615 0.00 0.00 34.90 1.40
746 759 5.427157 AGTTTATGTTTGGTTGGAAGGGTTT 59.573 36.000 0.00 0.00 0.00 3.27
747 760 4.966168 AGTTTATGTTTGGTTGGAAGGGTT 59.034 37.500 0.00 0.00 0.00 4.11
748 761 4.552674 AGTTTATGTTTGGTTGGAAGGGT 58.447 39.130 0.00 0.00 0.00 4.34
749 762 6.658188 TTAGTTTATGTTTGGTTGGAAGGG 57.342 37.500 0.00 0.00 0.00 3.95
750 763 8.950208 TTTTTAGTTTATGTTTGGTTGGAAGG 57.050 30.769 0.00 0.00 0.00 3.46
805 818 9.668497 GTTTACATCTTACTGAAGGGAGTATTT 57.332 33.333 0.00 0.00 33.09 1.40
806 819 7.980099 CGTTTACATCTTACTGAAGGGAGTATT 59.020 37.037 0.00 0.00 33.09 1.89
807 820 7.490000 CGTTTACATCTTACTGAAGGGAGTAT 58.510 38.462 0.00 0.00 33.09 2.12
808 821 6.626623 GCGTTTACATCTTACTGAAGGGAGTA 60.627 42.308 0.00 0.00 33.09 2.59
809 822 5.721232 CGTTTACATCTTACTGAAGGGAGT 58.279 41.667 0.00 0.00 33.09 3.85
810 823 4.567159 GCGTTTACATCTTACTGAAGGGAG 59.433 45.833 0.00 0.00 33.09 4.30
811 824 4.222145 AGCGTTTACATCTTACTGAAGGGA 59.778 41.667 0.00 0.00 33.09 4.20
812 825 4.504858 AGCGTTTACATCTTACTGAAGGG 58.495 43.478 0.00 0.00 33.09 3.95
813 826 5.411781 AGAGCGTTTACATCTTACTGAAGG 58.588 41.667 0.00 0.00 33.09 3.46
814 827 6.952935 AAGAGCGTTTACATCTTACTGAAG 57.047 37.500 0.00 0.00 31.63 3.02
828 841 9.503399 CCCCTCTAAATAAATATAAGAGCGTTT 57.497 33.333 0.00 0.00 33.80 3.60
829 842 8.657712 ACCCCTCTAAATAAATATAAGAGCGTT 58.342 33.333 0.00 0.00 33.80 4.84
830 843 8.203681 ACCCCTCTAAATAAATATAAGAGCGT 57.796 34.615 0.00 0.00 33.80 5.07
831 844 9.804758 CTACCCCTCTAAATAAATATAAGAGCG 57.195 37.037 0.00 0.00 33.80 5.03
855 868 4.589798 TGCTCACTTGTTTGTAGGGTACTA 59.410 41.667 0.00 0.00 0.00 1.82
858 871 4.564821 GGATGCTCACTTGTTTGTAGGGTA 60.565 45.833 0.00 0.00 0.00 3.69
859 872 3.412386 GATGCTCACTTGTTTGTAGGGT 58.588 45.455 0.00 0.00 0.00 4.34
860 873 2.749621 GGATGCTCACTTGTTTGTAGGG 59.250 50.000 0.00 0.00 0.00 3.53
861 874 3.411446 TGGATGCTCACTTGTTTGTAGG 58.589 45.455 0.00 0.00 0.00 3.18
862 875 4.095483 GGATGGATGCTCACTTGTTTGTAG 59.905 45.833 0.00 0.00 0.00 2.74
868 881 2.440409 GTTGGATGGATGCTCACTTGT 58.560 47.619 0.00 0.00 0.00 3.16
903 916 7.581213 ATGACAATGAAGGTGTTGACTTTAA 57.419 32.000 0.00 0.00 0.00 1.52
909 922 5.359292 TGACAAATGACAATGAAGGTGTTGA 59.641 36.000 0.00 0.00 0.00 3.18
968 988 3.384668 GGAAGTTCTTGCTTTCTTTGGC 58.615 45.455 2.25 0.00 0.00 4.52
1344 1383 1.135915 CTGATGTAGAAGCTGAGGCGT 59.864 52.381 0.00 0.00 44.37 5.68
1514 1562 5.422214 AGTAGCTAACACTGGCACTAATT 57.578 39.130 0.00 0.00 0.00 1.40
1519 1567 3.870633 AGTAGTAGCTAACACTGGCAC 57.129 47.619 7.52 0.00 0.00 5.01
1751 1884 3.173668 TGCATACCGGTACATCTCAAC 57.826 47.619 18.55 0.97 0.00 3.18
1763 1896 4.891627 TGTGACCAATAAATGCATACCG 57.108 40.909 0.00 0.00 0.00 4.02
1785 1918 8.091449 GCTATAGACAGACCACATAAGCTAATT 58.909 37.037 3.21 0.00 0.00 1.40
1798 1931 6.263392 TCACTTAGATGTGCTATAGACAGACC 59.737 42.308 3.21 0.00 37.81 3.85
1799 1932 7.265647 TCACTTAGATGTGCTATAGACAGAC 57.734 40.000 3.21 4.61 37.81 3.51
1800 1933 8.470657 AATCACTTAGATGTGCTATAGACAGA 57.529 34.615 3.21 0.22 36.96 3.41
1801 1934 8.355913 TGAATCACTTAGATGTGCTATAGACAG 58.644 37.037 3.21 0.00 36.96 3.51
1802 1935 8.237811 TGAATCACTTAGATGTGCTATAGACA 57.762 34.615 3.21 5.76 36.96 3.41
1803 1936 9.703892 ATTGAATCACTTAGATGTGCTATAGAC 57.296 33.333 3.21 0.00 36.96 2.59
1804 1937 9.920133 GATTGAATCACTTAGATGTGCTATAGA 57.080 33.333 3.21 0.00 36.96 1.98
1805 1938 9.702494 TGATTGAATCACTTAGATGTGCTATAG 57.298 33.333 3.29 0.00 36.96 1.31
1807 1940 8.969260 TTGATTGAATCACTTAGATGTGCTAT 57.031 30.769 7.48 0.00 39.39 2.97
1808 1941 8.791327 TTTGATTGAATCACTTAGATGTGCTA 57.209 30.769 7.48 0.00 39.39 3.49
1809 1942 7.692460 TTTGATTGAATCACTTAGATGTGCT 57.308 32.000 7.48 0.00 39.39 4.40
1849 1982 9.927081 AGATATGTGTGGATATTTTCTTTTCCT 57.073 29.630 0.00 0.00 0.00 3.36
1855 1988 9.857656 ACATGAAGATATGTGTGGATATTTTCT 57.142 29.630 0.00 0.00 39.68 2.52
1885 2018 9.797642 TGCACATCTAAATCCTATGTCATTAAT 57.202 29.630 0.00 0.00 31.60 1.40
1886 2019 9.625747 TTGCACATCTAAATCCTATGTCATTAA 57.374 29.630 0.00 0.00 31.60 1.40
1887 2020 9.797642 ATTGCACATCTAAATCCTATGTCATTA 57.202 29.630 0.00 0.00 31.60 1.90
1888 2021 8.701908 ATTGCACATCTAAATCCTATGTCATT 57.298 30.769 0.00 0.00 31.60 2.57
1889 2022 9.224267 GTATTGCACATCTAAATCCTATGTCAT 57.776 33.333 0.00 0.00 31.60 3.06
1890 2023 8.432013 AGTATTGCACATCTAAATCCTATGTCA 58.568 33.333 0.00 0.00 31.60 3.58
1891 2024 8.839310 AGTATTGCACATCTAAATCCTATGTC 57.161 34.615 0.00 0.00 31.60 3.06
1892 2025 9.060347 CAAGTATTGCACATCTAAATCCTATGT 57.940 33.333 0.00 0.00 40.39 2.29
1910 2043 8.961092 GCACATTTAGATATGCAACAAGTATTG 58.039 33.333 0.00 0.00 42.84 1.90
1911 2044 8.906867 AGCACATTTAGATATGCAACAAGTATT 58.093 29.630 0.00 0.00 38.16 1.89
1912 2045 8.455903 AGCACATTTAGATATGCAACAAGTAT 57.544 30.769 0.00 0.00 38.16 2.12
1913 2046 7.864108 AGCACATTTAGATATGCAACAAGTA 57.136 32.000 0.00 0.00 38.16 2.24
1914 2047 6.764308 AGCACATTTAGATATGCAACAAGT 57.236 33.333 0.00 0.00 38.16 3.16
1915 2048 9.571810 TTAAAGCACATTTAGATATGCAACAAG 57.428 29.630 0.00 0.00 38.16 3.16
1916 2049 9.352784 GTTAAAGCACATTTAGATATGCAACAA 57.647 29.630 0.00 0.00 38.16 2.83
1917 2050 8.518702 TGTTAAAGCACATTTAGATATGCAACA 58.481 29.630 0.00 0.00 38.16 3.33
1918 2051 8.909708 TGTTAAAGCACATTTAGATATGCAAC 57.090 30.769 0.00 0.00 38.16 4.17
1919 2052 9.920133 TTTGTTAAAGCACATTTAGATATGCAA 57.080 25.926 0.00 0.00 38.16 4.08
1920 2053 9.920133 TTTTGTTAAAGCACATTTAGATATGCA 57.080 25.926 0.00 0.00 38.16 3.96
1929 2062 8.940768 ACATACAGTTTTGTTAAAGCACATTT 57.059 26.923 0.00 0.00 38.76 2.32
1930 2063 8.940768 AACATACAGTTTTGTTAAAGCACATT 57.059 26.923 0.81 0.00 37.03 2.71
1945 2078 8.947115 GGCTTTCTAGACAATTAACATACAGTT 58.053 33.333 0.00 0.00 44.27 3.16
1946 2079 8.322091 AGGCTTTCTAGACAATTAACATACAGT 58.678 33.333 0.00 0.00 0.00 3.55
1947 2080 8.607459 CAGGCTTTCTAGACAATTAACATACAG 58.393 37.037 0.00 0.00 0.00 2.74
1948 2081 7.552687 CCAGGCTTTCTAGACAATTAACATACA 59.447 37.037 0.00 0.00 0.00 2.29
1949 2082 7.467403 GCCAGGCTTTCTAGACAATTAACATAC 60.467 40.741 3.29 0.00 0.00 2.39
1950 2083 6.542370 GCCAGGCTTTCTAGACAATTAACATA 59.458 38.462 3.29 0.00 0.00 2.29
1951 2084 5.358160 GCCAGGCTTTCTAGACAATTAACAT 59.642 40.000 3.29 0.00 0.00 2.71
1952 2085 4.700213 GCCAGGCTTTCTAGACAATTAACA 59.300 41.667 3.29 0.00 0.00 2.41
1953 2086 4.096532 GGCCAGGCTTTCTAGACAATTAAC 59.903 45.833 12.43 0.00 0.00 2.01
1954 2087 4.263727 TGGCCAGGCTTTCTAGACAATTAA 60.264 41.667 12.43 0.00 0.00 1.40
1964 2097 3.228453 CATATGATTGGCCAGGCTTTCT 58.772 45.455 12.43 0.00 0.00 2.52
1965 2098 2.961062 ACATATGATTGGCCAGGCTTTC 59.039 45.455 12.43 6.63 0.00 2.62
1972 2105 4.507157 CCTGACCATACATATGATTGGCCA 60.507 45.833 21.13 17.39 35.75 5.36
1977 2110 4.563580 GCGACCCTGACCATACATATGATT 60.564 45.833 10.38 0.00 35.75 2.57
1982 2115 1.783071 TGCGACCCTGACCATACATA 58.217 50.000 0.00 0.00 0.00 2.29
1986 2119 1.691976 CCTATTGCGACCCTGACCATA 59.308 52.381 0.00 0.00 0.00 2.74
1987 2120 0.469917 CCTATTGCGACCCTGACCAT 59.530 55.000 0.00 0.00 0.00 3.55
1988 2121 1.904771 CCTATTGCGACCCTGACCA 59.095 57.895 0.00 0.00 0.00 4.02
1989 2122 1.523938 GCCTATTGCGACCCTGACC 60.524 63.158 0.00 0.00 0.00 4.02
1990 2123 1.523938 GGCCTATTGCGACCCTGAC 60.524 63.158 0.00 0.00 42.61 3.51
2004 2137 0.035439 ATTTGAATCGACGGTGGCCT 60.035 50.000 3.32 0.00 0.00 5.19
2005 2138 0.377203 GATTTGAATCGACGGTGGCC 59.623 55.000 0.00 0.00 0.00 5.36
2006 2139 3.897819 GATTTGAATCGACGGTGGC 57.102 52.632 0.00 0.00 0.00 5.01
2043 2182 4.988540 TCGCCGATTATCAAAGTCCATTAG 59.011 41.667 0.00 0.00 0.00 1.73
2054 2193 1.402613 TCTGACGTTCGCCGATTATCA 59.597 47.619 0.00 0.00 40.70 2.15
2055 2194 2.115348 TCTGACGTTCGCCGATTATC 57.885 50.000 0.00 0.00 40.70 1.75
2056 2195 2.572191 TTCTGACGTTCGCCGATTAT 57.428 45.000 0.00 0.00 40.70 1.28
2058 2197 1.722011 AATTCTGACGTTCGCCGATT 58.278 45.000 0.00 0.00 40.70 3.34
2059 2198 1.722011 AAATTCTGACGTTCGCCGAT 58.278 45.000 0.00 0.00 40.70 4.18
2060 2199 1.504359 AAAATTCTGACGTTCGCCGA 58.496 45.000 0.00 0.00 40.70 5.54
2061 2200 2.309898 AAAAATTCTGACGTTCGCCG 57.690 45.000 0.00 0.00 44.03 6.46
2062 2201 3.602489 GCTTAAAAATTCTGACGTTCGCC 59.398 43.478 0.00 0.00 0.00 5.54
2069 2214 6.158598 TCTTGCCATGCTTAAAAATTCTGAC 58.841 36.000 0.00 0.00 0.00 3.51
2128 2273 9.549078 TGTGACAACATAATTTGTACTCTAACA 57.451 29.630 0.00 0.00 39.88 2.41
2131 2276 9.214957 CCTTGTGACAACATAATTTGTACTCTA 57.785 33.333 0.00 0.00 39.88 2.43
2132 2277 7.936847 TCCTTGTGACAACATAATTTGTACTCT 59.063 33.333 0.00 0.00 39.88 3.24
2133 2278 8.015658 GTCCTTGTGACAACATAATTTGTACTC 58.984 37.037 0.00 0.00 43.85 2.59
2134 2279 7.307751 CGTCCTTGTGACAACATAATTTGTACT 60.308 37.037 0.00 0.00 44.71 2.73
2135 2280 6.795114 CGTCCTTGTGACAACATAATTTGTAC 59.205 38.462 0.00 0.00 44.71 2.90
2139 2284 5.529430 TGACGTCCTTGTGACAACATAATTT 59.471 36.000 14.12 0.00 44.71 1.82
2141 2286 4.637276 TGACGTCCTTGTGACAACATAAT 58.363 39.130 14.12 0.00 44.71 1.28
2152 2297 9.893305 CTTAATAAAGAAAATTGACGTCCTTGT 57.107 29.630 14.12 1.42 34.37 3.16
2197 2342 3.993736 GCAAATCCGCCATGTTTAGTTTT 59.006 39.130 0.00 0.00 0.00 2.43
2210 2355 2.096442 GCAAGCAAGGCAAATCCGC 61.096 57.895 0.00 0.00 40.77 5.54
2215 2360 4.333913 TTCATTTAGCAAGCAAGGCAAA 57.666 36.364 0.00 0.00 0.00 3.68
2271 2776 4.984785 GCTCAAGTGGAACAAAATCCTTTC 59.015 41.667 0.00 0.00 44.16 2.62
2281 2786 1.486310 AGTGTCAGCTCAAGTGGAACA 59.514 47.619 0.00 0.00 41.43 3.18
2290 2795 1.560505 TGGATGCTAGTGTCAGCTCA 58.439 50.000 0.00 0.00 42.30 4.26
2295 2800 4.202357 ACAAGAACTTGGATGCTAGTGTCA 60.202 41.667 17.05 0.00 44.45 3.58
2304 2809 7.337689 TGGATCAAGATAACAAGAACTTGGATG 59.662 37.037 17.05 7.82 44.45 3.51
2306 2811 6.778821 TGGATCAAGATAACAAGAACTTGGA 58.221 36.000 17.05 6.68 44.45 3.53
2377 2894 2.296471 CTGAGGTAATGGTACTAGGCCG 59.704 54.545 0.00 0.00 0.00 6.13
2384 2901 3.467803 GGCATGTCTGAGGTAATGGTAC 58.532 50.000 0.00 0.00 0.00 3.34
2413 2930 2.765807 CGGAGGATGGCCAGGTCT 60.766 66.667 13.05 8.39 36.29 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.